Query psy13629
Match_columns 395
No_of_seqs 324 out of 2365
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 16:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 2.8E-38 6.1E-43 317.4 21.2 261 91-386 978-1251(1289)
2 KOG0881|consensus 99.9 3.5E-29 7.6E-34 200.0 1.5 97 299-395 14-110 (164)
3 KOG0883|consensus 99.9 1.2E-28 2.6E-33 230.9 2.6 109 287-395 270-378 (518)
4 KOG1214|consensus 99.9 5.9E-25 1.3E-29 221.9 15.5 201 91-300 1030-1232(1289)
5 KOG0546|consensus 99.9 1.5E-25 3.3E-30 210.5 3.7 93 302-395 21-125 (372)
6 KOG0882|consensus 99.9 4.8E-25 1E-29 210.7 4.6 95 301-395 411-505 (558)
7 COG0652 PpiB Peptidyl-prolyl c 99.9 1.5E-24 3.3E-29 185.9 5.6 93 299-395 4-100 (158)
8 KOG1215|consensus 99.9 5.7E-22 1.2E-26 216.6 22.5 207 108-320 417-628 (877)
9 KOG0880|consensus 99.9 8.5E-24 1.8E-28 182.5 4.7 94 301-395 51-149 (217)
10 KOG0884|consensus 99.9 5.9E-24 1.3E-28 169.1 2.3 96 300-395 6-101 (161)
11 cd01927 cyclophilin_WD40 cyclo 99.9 1.5E-22 3.3E-27 174.4 6.9 96 300-395 3-98 (148)
12 cd01928 Cyclophilin_PPIL3_like 99.9 1.9E-22 4.1E-27 174.8 6.6 98 298-395 4-101 (153)
13 KOG0879|consensus 99.9 5.1E-23 1.1E-27 166.6 2.1 94 301-395 22-124 (177)
14 KOG0885|consensus 99.9 7.1E-23 1.5E-27 191.7 3.2 102 294-395 12-113 (439)
15 cd01922 cyclophilin_SpCYP2_lik 99.9 3.4E-22 7.4E-27 171.8 6.3 96 300-395 3-98 (146)
16 cd01923 cyclophilin_RING cyclo 99.9 6.7E-22 1.4E-26 172.5 6.9 98 298-395 3-100 (159)
17 cd01925 cyclophilin_CeCYP16-li 99.8 9.4E-22 2E-26 173.5 6.6 101 295-395 6-106 (171)
18 cd01921 cyclophilin_RRM cyclop 99.8 3.1E-21 6.7E-26 169.6 6.3 96 300-395 3-105 (166)
19 KOG0111|consensus 99.8 2.7E-21 5.9E-26 169.3 2.8 94 301-395 148-245 (298)
20 PRK10791 peptidyl-prolyl cis-t 99.8 1.8E-19 4E-24 157.6 6.9 94 299-395 4-98 (164)
21 PRK10903 peptidyl-prolyl cis-t 99.8 3.2E-19 6.8E-24 159.6 6.8 95 298-395 32-127 (190)
22 cd01920 cyclophilin_EcCYP_like 99.8 3.6E-19 7.8E-24 154.6 6.2 93 300-395 3-96 (155)
23 cd01924 cyclophilin_TLP40_like 99.8 4.4E-19 9.5E-24 156.9 5.6 95 301-395 4-125 (176)
24 PLN03149 peptidyl-prolyl isome 99.8 5.8E-19 1.3E-23 157.5 5.6 93 302-395 31-132 (186)
25 cd01926 cyclophilin_ABH_like c 99.8 1.2E-18 2.6E-23 153.0 6.6 94 301-395 12-114 (164)
26 PTZ00060 cyclophilin; Provisio 99.7 2E-18 4.3E-23 153.9 6.6 94 301-395 27-130 (183)
27 PTZ00221 cyclophilin; Provisio 99.7 7.9E-18 1.7E-22 155.0 6.4 90 302-395 65-166 (249)
28 KOG0415|consensus 99.7 1.9E-17 4.1E-22 154.3 4.2 98 298-395 4-108 (479)
29 cd00317 cyclophilin cyclophili 99.7 8.2E-17 1.8E-21 138.7 6.2 95 300-395 3-97 (146)
30 PF08450 SGL: SMP-30/Gluconola 99.6 1.1E-13 2.3E-18 129.5 22.8 179 109-300 23-219 (246)
31 KOG0865|consensus 99.6 2.4E-16 5.2E-21 136.4 2.8 94 301-395 15-115 (167)
32 PLN02919 haloacid dehalogenase 99.6 2.8E-13 6E-18 149.9 26.0 184 108-299 590-838 (1057)
33 PF08450 SGL: SMP-30/Gluconola 99.6 1.9E-13 4E-18 127.8 20.5 153 131-296 2-166 (246)
34 PLN02919 haloacid dehalogenase 99.6 2.4E-13 5.3E-18 150.3 24.5 169 123-297 562-773 (1057)
35 PF00160 Pro_isomerase: Cyclop 99.5 1.1E-14 2.3E-19 126.8 5.3 95 300-395 5-105 (155)
36 KOG1215|consensus 99.5 1.9E-12 4E-17 142.1 17.8 177 111-294 462-639 (877)
37 PF10282 Lactonase: Lactonase, 99.4 2.1E-10 4.5E-15 112.8 24.7 169 126-295 141-323 (345)
38 COG3386 Gluconolactonase [Carb 99.3 3.7E-10 8E-15 108.6 18.6 171 126-300 22-249 (307)
39 PRK11028 6-phosphogluconolacto 99.2 2E-08 4.3E-13 97.9 26.1 167 127-294 78-258 (330)
40 PRK11028 6-phosphogluconolacto 99.1 1.6E-08 3.5E-13 98.5 22.3 183 109-294 13-205 (330)
41 PF10282 Lactonase: Lactonase, 99.1 4.5E-08 9.7E-13 96.3 24.9 184 109-294 14-222 (345)
42 COG3391 Uncharacterized conser 99.1 2.5E-08 5.4E-13 99.4 21.5 184 108-300 96-289 (381)
43 PF00058 Ldl_recept_b: Low-den 99.0 1.9E-09 4.2E-14 72.1 6.1 42 230-273 1-42 (42)
44 COG3391 Uncharacterized conser 98.9 1.2E-07 2.7E-12 94.4 20.6 182 110-299 13-195 (381)
45 COG2706 3-carboxymuconate cycl 98.9 2.3E-07 5E-12 88.2 20.9 166 128-296 144-323 (346)
46 PF00058 Ldl_recept_b: Low-den 98.9 7E-09 1.5E-13 69.4 7.0 41 187-227 1-42 (42)
47 KOG4659|consensus 98.9 5.3E-08 1.1E-12 104.3 16.8 156 129-300 365-567 (1899)
48 TIGR02604 Piru_Ver_Nterm putat 98.9 1.8E-07 3.8E-12 92.9 19.7 161 121-291 4-210 (367)
49 KOG1520|consensus 98.8 2.3E-08 5E-13 96.4 11.1 149 125-282 111-281 (376)
50 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 5.7E-06 1.2E-10 78.0 23.8 179 109-297 12-190 (300)
51 KOG1520|consensus 98.7 8.5E-07 1.8E-11 85.8 16.6 204 125-338 61-286 (376)
52 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 1.5E-05 3.3E-10 75.1 25.2 183 109-300 96-285 (300)
53 KOG4659|consensus 98.7 7.4E-07 1.6E-11 95.8 17.1 179 109-297 385-628 (1899)
54 PF06977 SdiA-regulated: SdiA- 98.6 2.6E-05 5.6E-10 72.9 23.4 168 127-300 20-207 (248)
55 TIGR02604 Piru_Ver_Nterm putat 98.6 4.8E-06 1E-10 82.6 18.8 166 121-294 64-300 (367)
56 COG3386 Gluconolactonase [Carb 98.5 8.6E-06 1.9E-10 78.5 19.2 148 129-286 111-278 (307)
57 PF03088 Str_synth: Strictosid 98.5 6.1E-07 1.3E-11 70.0 8.5 71 178-250 1-88 (89)
58 PF07995 GSDH: Glucose / Sorbo 98.5 3.5E-06 7.7E-11 82.4 14.8 155 128-288 1-205 (331)
59 PF06977 SdiA-regulated: SdiA- 98.5 2.8E-05 6.1E-10 72.6 19.8 172 109-283 45-240 (248)
60 TIGR03606 non_repeat_PQQ dehyd 98.4 2.4E-05 5.1E-10 79.0 19.5 163 119-285 20-250 (454)
61 smart00135 LY Low-density lipo 98.4 7.9E-07 1.7E-11 59.2 6.1 41 168-208 2-42 (43)
62 COG2706 3-carboxymuconate cycl 98.4 7.7E-05 1.7E-09 71.3 21.6 186 108-296 16-223 (346)
63 smart00135 LY Low-density lipo 98.4 6E-07 1.3E-11 59.8 4.7 41 257-297 2-42 (43)
64 PF02239 Cytochrom_D1: Cytochr 98.3 0.0002 4.4E-09 71.1 21.9 183 109-299 17-207 (369)
65 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00024 5.1E-09 69.7 21.9 114 183-300 202-336 (352)
66 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00051 1.1E-08 67.4 23.3 197 108-314 27-310 (352)
67 PF03022 MRJP: Major royal jel 98.2 0.0003 6.6E-09 67.4 20.8 161 130-295 2-216 (287)
68 PRK03629 tolB translocation pr 98.2 0.00053 1.2E-08 69.5 23.7 185 105-298 176-367 (429)
69 PRK04792 tolB translocation pr 98.2 0.00036 7.9E-09 71.1 22.4 183 108-299 198-387 (448)
70 KOG4499|consensus 98.2 0.0001 2.2E-09 66.9 15.9 84 215-300 155-247 (310)
71 KOG4499|consensus 98.1 0.00012 2.6E-09 66.4 15.4 117 119-236 148-273 (310)
72 PRK04922 tolB translocation pr 98.1 0.00059 1.3E-08 69.3 22.3 182 108-298 184-372 (433)
73 PF03088 Str_synth: Strictosid 98.1 2E-05 4.3E-10 61.5 8.6 72 221-295 1-88 (89)
74 PRK04792 tolB translocation pr 98.1 0.00069 1.5E-08 69.1 22.0 182 109-300 243-431 (448)
75 PRK05137 tolB translocation pr 98.1 0.0013 2.8E-08 66.8 23.8 184 108-300 182-372 (435)
76 PRK00178 tolB translocation pr 98.0 0.0018 3.9E-08 65.5 23.7 182 109-299 180-368 (430)
77 PRK05137 tolB translocation pr 98.0 0.001 2.2E-08 67.5 21.9 182 109-300 227-418 (435)
78 TIGR02800 propeller_TolB tol-p 98.0 0.0019 4.2E-08 64.7 23.2 181 109-298 171-358 (417)
79 PRK02889 tolB translocation pr 98.0 0.0015 3.2E-08 66.2 22.3 181 109-298 177-364 (427)
80 PRK04922 tolB translocation pr 98.0 0.0013 2.8E-08 66.7 21.8 182 109-300 229-417 (433)
81 PRK04043 tolB translocation pr 98.0 0.0026 5.7E-08 64.3 23.3 180 109-300 214-406 (419)
82 PRK04043 tolB translocation pr 98.0 0.0029 6.3E-08 64.0 23.5 181 108-300 169-363 (419)
83 TIGR02800 propeller_TolB tol-p 98.0 0.0023 5.1E-08 64.1 22.9 183 108-300 214-403 (417)
84 PRK03629 tolB translocation pr 97.9 0.0038 8.3E-08 63.3 23.2 182 109-300 224-412 (429)
85 PRK01742 tolB translocation pr 97.8 0.004 8.8E-08 63.1 22.2 175 108-296 184-363 (429)
86 PRK00178 tolB translocation pr 97.8 0.0047 1E-07 62.4 22.7 182 109-300 224-412 (430)
87 PF03022 MRJP: Major royal jel 97.8 0.0021 4.5E-08 61.6 18.8 156 127-288 59-259 (287)
88 PRK02889 tolB translocation pr 97.8 0.005 1.1E-07 62.4 22.5 182 109-300 221-409 (427)
89 PRK01029 tolB translocation pr 97.8 0.009 2E-07 60.6 23.8 188 109-300 212-409 (428)
90 PF07995 GSDH: Glucose / Sorbo 97.8 0.0004 8.6E-09 68.0 13.5 160 128-290 113-331 (331)
91 cd00200 WD40 WD40 domain, foun 97.7 0.025 5.4E-07 51.4 23.3 177 109-295 32-208 (289)
92 cd00200 WD40 WD40 domain, foun 97.7 0.02 4.2E-07 52.1 22.0 177 109-295 74-250 (289)
93 COG4257 Vgb Streptogramin lyas 97.6 0.008 1.7E-07 56.1 18.2 131 98-236 67-206 (353)
94 PF02239 Cytochrom_D1: Cytochr 97.6 0.0044 9.5E-08 61.6 17.2 150 140-296 5-160 (369)
95 COG4257 Vgb Streptogramin lyas 97.5 0.0045 9.8E-08 57.7 15.5 164 120-295 53-220 (353)
96 COG3204 Uncharacterized protei 97.5 0.0092 2E-07 56.2 17.4 171 109-282 109-301 (316)
97 PRK01029 tolB translocation pr 97.4 0.042 9.1E-07 55.7 22.5 188 107-300 164-365 (428)
98 PF05096 Glu_cyclase_2: Glutam 97.4 0.062 1.3E-06 50.4 21.5 172 108-294 68-261 (264)
99 COG3204 Uncharacterized protei 97.4 0.019 4.1E-07 54.1 17.3 164 127-299 84-268 (316)
100 PRK01742 tolB translocation pr 97.3 0.048 1E-06 55.3 21.5 176 109-300 229-410 (429)
101 PRK02888 nitrous-oxide reducta 97.3 0.0064 1.4E-07 63.3 14.7 154 138-297 139-354 (635)
102 PF01436 NHL: NHL repeat; Int 97.2 0.00084 1.8E-08 40.5 4.6 28 174-202 1-28 (28)
103 PRK02888 nitrous-oxide reducta 97.1 0.035 7.5E-07 58.0 18.1 189 99-294 136-404 (635)
104 PF01436 NHL: NHL repeat; Int 97.1 0.0009 2E-08 40.4 3.9 26 264-290 2-27 (28)
105 TIGR03606 non_repeat_PQQ dehyd 97.1 0.052 1.1E-06 55.2 18.6 113 167-281 22-162 (454)
106 PF05096 Glu_cyclase_2: Glutam 97.0 0.27 5.9E-06 46.2 21.6 158 131-300 47-209 (264)
107 COG4946 Uncharacterized protei 96.4 0.086 1.9E-06 52.6 14.0 122 109-236 383-507 (668)
108 PF13449 Phytase-like: Esteras 96.4 0.49 1.1E-05 46.1 19.6 110 126-236 17-165 (326)
109 COG2133 Glucose/sorbosone dehy 96.4 0.12 2.7E-06 51.4 15.2 164 129-295 177-398 (399)
110 KOG0291|consensus 96.3 0.67 1.5E-05 48.9 20.1 167 109-283 373-540 (893)
111 PF02333 Phytase: Phytase; In 96.3 1.4 3E-05 43.8 22.5 183 109-297 79-293 (381)
112 KOG0266|consensus 96.0 1 2.3E-05 46.0 20.4 133 109-249 226-364 (456)
113 KOG0279|consensus 96.0 1.4 3E-05 41.5 21.7 190 99-300 70-268 (315)
114 PTZ00421 coronin; Provisional 96.0 2.4 5.2E-05 43.9 25.3 183 109-296 99-292 (493)
115 COG4946 Uncharacterized protei 95.9 1.3 2.8E-05 44.6 19.2 133 142-282 373-507 (668)
116 TIGR03118 PEPCTERM_chp_1 conse 95.9 1.1 2.4E-05 42.9 17.9 168 121-300 15-236 (336)
117 KOG0310|consensus 95.9 0.88 1.9E-05 45.6 17.9 195 109-313 91-290 (487)
118 COG2133 Glucose/sorbosone dehy 95.7 0.24 5.2E-06 49.3 13.6 138 110-250 221-398 (399)
119 KOG0315|consensus 95.4 2.2 4.8E-05 39.6 18.7 135 108-250 61-198 (311)
120 KOG0291|consensus 95.3 3.7 8.1E-05 43.6 20.6 174 109-292 331-506 (893)
121 PF06433 Me-amine-dh_H: Methyl 95.1 0.39 8.4E-06 46.7 12.3 138 186-330 2-158 (342)
122 KOG1984|consensus 95.0 0.014 3.1E-07 61.9 2.5 62 46-107 831-895 (1007)
123 PF01731 Arylesterase: Arylest 94.9 0.13 2.9E-06 39.8 7.1 39 167-205 46-84 (86)
124 PF02333 Phytase: Phytase; In 94.9 1.9 4.1E-05 42.8 16.7 149 138-294 66-237 (381)
125 KOG1446|consensus 94.7 4.1 8.9E-05 38.8 20.4 173 109-293 81-261 (311)
126 PLN00181 protein SPA1-RELATED; 94.5 7 0.00015 42.9 22.2 163 127-294 482-648 (793)
127 TIGR03032 conserved hypothetic 94.5 4.3 9.3E-05 39.1 17.3 193 110-311 30-251 (335)
128 PF05694 SBP56: 56kDa selenium 94.4 1.5 3.2E-05 44.1 14.8 63 219-283 313-393 (461)
129 PF01731 Arylesterase: Arylest 94.4 0.14 3.1E-06 39.7 6.2 40 206-247 43-82 (86)
130 TIGR02276 beta_rpt_yvtn 40-res 94.4 0.23 4.9E-06 32.3 6.3 41 185-226 2-42 (42)
131 KOG0273|consensus 94.3 4.4 9.5E-05 40.8 17.6 120 109-236 258-377 (524)
132 COG0823 TolB Periplasmic compo 94.2 2.4 5.2E-05 43.0 16.3 166 108-282 173-344 (425)
133 PTZ00421 coronin; Provisional 93.9 9.1 0.0002 39.6 21.4 124 124-249 71-198 (493)
134 PF05787 DUF839: Bacterial pro 93.8 0.82 1.8E-05 47.6 12.3 63 173-236 348-453 (524)
135 PLN00181 protein SPA1-RELATED; 93.7 13 0.00028 40.9 23.1 176 109-292 556-736 (793)
136 KOG0289|consensus 93.6 8.6 0.00019 38.4 19.5 165 109-281 284-450 (506)
137 KOG0285|consensus 93.5 4.9 0.00011 39.2 15.8 120 123-249 146-265 (460)
138 PTZ00420 coronin; Provisional 93.5 12 0.00025 39.5 24.9 163 126-295 123-294 (568)
139 COG3823 Glutamine cyclotransfe 93.5 1.7 3.6E-05 39.4 11.8 68 182-250 181-260 (262)
140 KOG1407|consensus 93.4 4 8.6E-05 38.2 14.4 171 109-293 88-260 (313)
141 KOG0285|consensus 93.1 9.4 0.0002 37.3 17.1 177 108-296 173-350 (460)
142 KOG0318|consensus 93.0 12 0.00026 38.3 19.2 189 110-315 302-500 (603)
143 KOG0318|consensus 92.9 12 0.00027 38.2 19.7 163 126-297 233-395 (603)
144 PF05787 DUF839: Bacterial pro 92.6 1.7 3.7E-05 45.3 12.4 110 126-236 347-520 (524)
145 KOG0315|consensus 92.6 8.9 0.00019 35.7 21.5 177 108-293 20-196 (311)
146 KOG0263|consensus 92.4 9.2 0.0002 40.6 17.3 173 109-292 474-647 (707)
147 TIGR03118 PEPCTERM_chp_1 conse 92.2 4.6 9.9E-05 38.8 13.5 123 168-294 16-170 (336)
148 KOG0272|consensus 92.1 4.4 9.5E-05 40.2 13.6 176 109-295 242-419 (459)
149 PF06433 Me-amine-dh_H: Methyl 91.8 14 0.0003 36.2 21.0 189 99-298 101-325 (342)
150 KOG0272|consensus 91.8 3.2 7E-05 41.1 12.3 119 111-233 328-446 (459)
151 PTZ00420 coronin; Provisional 91.7 20 0.00043 37.9 23.9 125 123-250 69-198 (568)
152 KOG0266|consensus 91.4 18 0.0004 36.9 23.1 162 125-296 200-366 (456)
153 PF02191 OLF: Olfactomedin-lik 91.1 13 0.00029 34.8 16.9 146 140-291 78-246 (250)
154 KOG4378|consensus 91.1 9.5 0.0002 38.8 14.9 138 109-250 102-240 (673)
155 smart00284 OLF Olfactomedin-li 91.0 14 0.0003 34.8 17.0 142 140-286 83-246 (255)
156 KOG0641|consensus 90.9 13 0.00027 34.2 16.7 126 120-252 175-306 (350)
157 PTZ00395 Sec24-related protein 90.9 0.15 3.3E-06 57.0 2.6 64 45-108 1376-1449(1560)
158 KOG0294|consensus 90.8 16 0.00035 35.1 18.5 134 108-250 63-198 (362)
159 TIGR02276 beta_rpt_yvtn 40-res 90.2 1.9 4E-05 27.8 6.6 42 138-183 1-42 (42)
160 KOG1446|consensus 90.2 18 0.00039 34.6 18.0 156 127-293 13-169 (311)
161 COG0823 TolB Periplasmic compo 89.8 20 0.00043 36.4 16.6 135 109-249 219-358 (425)
162 KOG0270|consensus 89.6 18 0.00039 36.2 15.3 151 132-299 247-409 (463)
163 KOG0646|consensus 89.4 26 0.00056 35.4 19.5 184 109-298 104-311 (476)
164 PF13449 Phytase-like: Esteras 89.3 4.6 0.0001 39.3 11.3 106 173-282 18-165 (326)
165 KOG0268|consensus 88.8 13 0.00029 36.3 13.5 173 109-297 90-262 (433)
166 KOG1274|consensus 88.8 17 0.00037 39.6 15.5 154 130-294 15-168 (933)
167 COG5276 Uncharacterized conser 88.2 25 0.00054 33.7 20.4 164 109-285 107-277 (370)
168 KOG0279|consensus 87.9 25 0.00054 33.3 19.4 169 128-301 15-187 (315)
169 PF00930 DPPIV_N: Dipeptidyl p 87.7 14 0.00031 36.2 13.8 99 133-236 239-346 (353)
170 TIGR03032 conserved hypothetic 87.6 3.9 8.5E-05 39.4 9.1 62 169-236 197-259 (335)
171 PF14583 Pectate_lyase22: Olig 87.0 35 0.00076 34.0 17.4 158 136-300 43-230 (386)
172 PF08662 eIF2A: Eukaryotic tra 85.9 25 0.00054 31.3 18.7 122 151-282 39-162 (194)
173 PF00930 DPPIV_N: Dipeptidyl p 85.6 38 0.00083 33.2 19.5 166 108-279 158-343 (353)
174 KOG2919|consensus 85.5 17 0.00036 35.2 12.0 164 125-300 155-324 (406)
175 PF02897 Peptidase_S9_N: Proly 85.1 43 0.00094 33.4 22.8 186 108-300 150-364 (414)
176 KOG0310|consensus 85.1 34 0.00074 34.7 14.4 181 109-298 49-229 (487)
177 PF05694 SBP56: 56kDa selenium 84.3 28 0.0006 35.3 13.5 130 106-236 220-392 (461)
178 PF08662 eIF2A: Eukaryotic tra 84.1 30 0.00066 30.8 18.0 120 109-236 40-162 (194)
179 KOG0292|consensus 83.9 74 0.0016 35.1 17.5 103 128-235 206-309 (1202)
180 KOG0292|consensus 83.8 41 0.0009 36.9 15.1 162 127-298 8-169 (1202)
181 KOG2055|consensus 83.2 29 0.00064 35.0 13.0 150 126-283 342-502 (514)
182 KOG0286|consensus 82.5 47 0.001 31.8 18.7 122 109-234 167-290 (343)
183 KOG0269|consensus 82.3 36 0.00078 36.6 13.9 169 109-292 111-283 (839)
184 KOG4328|consensus 82.2 28 0.00061 35.1 12.4 158 122-283 180-342 (498)
185 KOG0276|consensus 81.9 74 0.0016 33.6 17.5 154 127-288 12-165 (794)
186 KOG1274|consensus 81.8 87 0.0019 34.4 18.2 161 127-298 55-222 (933)
187 KOG0293|consensus 80.8 65 0.0014 32.3 15.8 186 98-294 230-425 (519)
188 KOG0281|consensus 80.7 12 0.00025 36.5 9.0 169 108-295 217-389 (499)
189 KOG4441|consensus 80.6 68 0.0015 33.9 15.8 180 104-297 297-502 (571)
190 KOG2111|consensus 79.4 62 0.0013 31.3 17.5 119 178-300 98-219 (346)
191 KOG1539|consensus 79.0 66 0.0014 35.0 14.6 149 93-249 449-606 (910)
192 KOG4328|consensus 78.6 18 0.00038 36.5 9.8 176 109-292 211-397 (498)
193 PF02897 Peptidase_S9_N: Proly 78.4 75 0.0016 31.6 17.2 140 108-250 252-405 (414)
194 PRK11138 outer membrane biogen 77.8 77 0.0017 31.4 18.2 97 140-249 256-353 (394)
195 KOG2110|consensus 77.4 77 0.0017 31.2 14.2 114 131-250 132-249 (391)
196 KOG0270|consensus 77.4 84 0.0018 31.7 18.4 172 108-286 266-441 (463)
197 KOG2048|consensus 76.7 1.1E+02 0.0023 32.5 19.5 165 130-298 430-605 (691)
198 KOG2139|consensus 76.5 82 0.0018 31.1 17.0 167 127-299 139-316 (445)
199 KOG4441|consensus 76.5 1.1E+02 0.0023 32.5 15.7 166 106-283 347-530 (571)
200 KOG0918|consensus 75.9 79 0.0017 31.6 13.2 28 220-248 314-341 (476)
201 KOG0299|consensus 75.8 95 0.002 31.5 15.1 142 98-249 208-356 (479)
202 KOG3914|consensus 75.8 88 0.0019 31.0 13.7 155 131-293 65-222 (390)
203 COG3211 PhoX Predicted phospha 75.3 35 0.00076 35.6 11.1 113 125-237 413-573 (616)
204 KOG0645|consensus 75.1 77 0.0017 30.1 19.1 161 128-292 14-178 (312)
205 KOG0268|consensus 74.3 32 0.0007 33.8 10.0 163 109-279 168-331 (433)
206 COG3823 Glutamine cyclotransfe 74.2 71 0.0015 29.3 14.7 180 132-327 49-238 (262)
207 PRK13616 lipoprotein LpqB; Pro 74.1 1.3E+02 0.0027 32.1 18.8 141 131-284 399-559 (591)
208 KOG4378|consensus 74.0 1.1E+02 0.0024 31.4 14.5 135 109-250 144-281 (673)
209 KOG0264|consensus 73.8 1E+02 0.0022 30.9 16.2 122 128-250 177-304 (422)
210 KOG0303|consensus 72.9 1.1E+02 0.0023 30.7 13.9 109 121-236 124-234 (472)
211 COG5276 Uncharacterized conser 72.1 97 0.0021 29.9 14.2 134 139-286 222-362 (370)
212 KOG1407|consensus 71.3 94 0.002 29.4 16.5 183 127-320 19-207 (313)
213 PF08053 Tna_leader: Tryptopha 69.7 2.5 5.5E-05 23.3 0.9 14 1-14 1-14 (24)
214 KOG0282|consensus 69.5 60 0.0013 33.0 11.0 178 109-294 281-462 (503)
215 KOG0286|consensus 69.2 1.1E+02 0.0024 29.4 17.3 151 131-292 148-301 (343)
216 KOG0308|consensus 69.0 1.3E+02 0.0028 32.0 13.5 126 128-261 171-296 (735)
217 KOG0306|consensus 68.9 1.8E+02 0.0038 31.6 15.1 156 126-292 506-662 (888)
218 KOG4532|consensus 68.6 1.1E+02 0.0024 29.1 15.0 143 108-258 138-290 (344)
219 PF13360 PQQ_2: PQQ-like domai 68.3 89 0.0019 27.9 20.8 144 139-299 75-235 (238)
220 KOG0306|consensus 67.5 62 0.0013 34.8 11.1 135 96-235 512-652 (888)
221 KOG0289|consensus 67.0 1.5E+02 0.0032 30.0 16.7 159 128-296 261-421 (506)
222 PRK09806 tryptophanase leader 66.1 3.3 7E-05 23.3 0.9 13 1-13 1-13 (26)
223 KOG0307|consensus 65.8 31 0.00066 38.5 8.8 170 126-300 114-290 (1049)
224 KOG0293|consensus 65.4 70 0.0015 32.1 10.4 121 109-236 292-413 (519)
225 KOG0649|consensus 65.3 1.2E+02 0.0026 28.4 17.4 156 127-300 113-280 (325)
226 KOG0294|consensus 65.1 1.4E+02 0.003 29.0 18.4 143 128-282 43-187 (362)
227 KOG0299|consensus 64.9 1.7E+02 0.0036 29.8 15.3 171 109-288 267-450 (479)
228 PF07433 DUF1513: Protein of u 61.6 1.6E+02 0.0034 28.5 14.3 58 181-238 57-119 (305)
229 KOG3545|consensus 60.9 1.4E+02 0.0031 27.8 11.7 140 140-284 77-238 (249)
230 COG3211 PhoX Predicted phospha 60.5 93 0.002 32.6 10.7 63 174-236 416-518 (616)
231 KOG0277|consensus 59.6 1.6E+02 0.0034 27.8 16.6 157 129-295 61-222 (311)
232 KOG0882|consensus 59.1 14 0.0003 37.2 4.4 75 262-351 85-159 (558)
233 KOG0277|consensus 58.9 1.6E+02 0.0035 27.7 14.1 94 109-205 84-178 (311)
234 KOG0284|consensus 58.7 64 0.0014 32.2 8.8 115 127-248 137-251 (464)
235 PF06739 SBBP: Beta-propeller 57.6 8.5 0.00018 24.7 1.9 18 265-283 14-31 (38)
236 KOG0322|consensus 55.9 59 0.0013 30.7 7.7 105 125-232 202-308 (323)
237 KOG0973|consensus 55.7 2.8E+02 0.0061 31.0 13.9 87 124-215 125-211 (942)
238 KOG0646|consensus 54.5 1.3E+02 0.0029 30.4 10.4 99 108-209 198-311 (476)
239 TIGR03300 assembly_YfgL outer 53.8 2.2E+02 0.0048 27.7 18.0 97 140-249 241-338 (377)
240 KOG1445|consensus 53.6 1.9E+02 0.004 30.9 11.4 52 109-161 701-752 (1012)
241 KOG0650|consensus 53.4 37 0.0008 35.5 6.4 96 195-296 544-639 (733)
242 KOG3881|consensus 53.3 1.4E+02 0.0031 29.7 10.1 114 108-227 226-341 (412)
243 KOG0269|consensus 52.4 71 0.0015 34.5 8.5 138 143-284 102-239 (839)
244 KOG0288|consensus 51.6 2.7E+02 0.0058 28.0 13.7 121 109-235 323-449 (459)
245 KOG0271|consensus 51.3 2.6E+02 0.0057 27.9 15.0 156 108-272 137-297 (480)
246 KOG0282|consensus 51.3 1.2E+02 0.0026 30.9 9.5 148 127-282 213-360 (503)
247 KOG0278|consensus 51.2 2.2E+02 0.0047 26.9 13.1 118 109-236 166-285 (334)
248 TIGR02171 Fb_sc_TIGR02171 Fibr 50.9 1.4E+02 0.003 33.2 10.7 99 186-287 319-424 (912)
249 KOG4649|consensus 50.7 2.2E+02 0.0049 27.0 10.5 23 178-200 34-56 (354)
250 KOG1985|consensus 48.2 11 0.00024 40.7 1.9 47 40-86 702-748 (887)
251 PF13360 PQQ_2: PQQ-like domai 48.1 2E+02 0.0043 25.5 20.3 99 139-249 35-140 (238)
252 KOG0271|consensus 47.8 2.3E+02 0.0051 28.3 10.6 112 109-226 180-297 (480)
253 KOG0313|consensus 47.7 3E+02 0.0064 27.4 12.7 128 108-248 281-408 (423)
254 PRK13616 lipoprotein LpqB; Pro 47.0 3.8E+02 0.0083 28.5 17.4 157 129-300 350-533 (591)
255 KOG2321|consensus 46.8 3.7E+02 0.0081 28.3 14.7 114 90-210 92-210 (703)
256 KOG0973|consensus 46.1 3.3E+02 0.0071 30.6 12.5 110 122-233 63-187 (942)
257 KOG2096|consensus 44.6 3.1E+02 0.0068 26.8 17.1 140 98-238 92-249 (420)
258 KOG1408|consensus 43.3 3.6E+02 0.0078 29.3 11.8 100 175-279 38-138 (1080)
259 PHA02713 hypothetical protein; 43.1 4.2E+02 0.0091 27.8 18.7 91 139-236 302-405 (557)
260 KOG0308|consensus 42.6 4.5E+02 0.0099 28.1 16.9 181 109-295 96-286 (735)
261 KOG3914|consensus 42.1 3.6E+02 0.0079 26.9 13.6 150 176-341 64-223 (390)
262 PLN00162 transport protein sec 41.1 18 0.00039 39.6 2.4 63 40-107 587-649 (761)
263 KOG1036|consensus 40.5 3.5E+02 0.0076 26.1 16.7 100 177-283 180-294 (323)
264 PF10313 DUF2415: Uncharacteri 40.4 1.1E+02 0.0024 20.4 5.1 36 220-257 3-41 (43)
265 KOG2055|consensus 39.7 4.3E+02 0.0094 27.0 15.1 161 127-296 212-376 (514)
266 PF14339 DUF4394: Domain of un 38.9 1.7E+02 0.0037 27.1 8.0 33 128-161 26-58 (236)
267 KOG1445|consensus 38.8 5.2E+02 0.011 27.7 12.3 176 109-297 604-788 (1012)
268 KOG2048|consensus 38.8 5.2E+02 0.011 27.7 25.1 120 100-235 8-128 (691)
269 KOG0650|consensus 38.6 1.7E+02 0.0036 30.9 8.5 121 122-250 515-638 (733)
270 KOG0640|consensus 38.5 3.8E+02 0.0083 26.1 11.3 165 124-300 212-389 (430)
271 KOG2110|consensus 37.7 4.2E+02 0.0091 26.3 14.4 117 180-300 91-211 (391)
272 KOG0281|consensus 37.0 3.3E+02 0.0072 26.9 9.7 131 109-249 258-388 (499)
273 KOG0263|consensus 36.8 5.8E+02 0.013 27.6 16.6 168 119-298 442-611 (707)
274 KOG0319|consensus 36.8 3.2E+02 0.0069 29.5 10.3 121 180-306 25-147 (775)
275 PF14583 Pectate_lyase22: Olig 36.7 4.5E+02 0.0097 26.4 17.0 143 108-258 60-231 (386)
276 PF09910 DUF2139: Uncharacteri 36.4 2.9E+02 0.0063 26.7 9.2 50 149-207 18-68 (339)
277 KOG0772|consensus 35.9 5.3E+02 0.011 26.9 12.4 116 119-236 158-287 (641)
278 KOG0319|consensus 35.7 6.1E+02 0.013 27.6 16.7 149 94-247 328-493 (775)
279 COG4247 Phy 3-phytase (myo-ino 35.1 4E+02 0.0087 25.3 13.6 78 125-205 149-234 (364)
280 KOG0772|consensus 33.5 5.8E+02 0.013 26.6 13.9 150 109-262 292-468 (641)
281 KOG0639|consensus 33.3 5.4E+02 0.012 26.8 10.9 156 131-297 422-584 (705)
282 PHA02713 hypothetical protein; 33.1 6E+02 0.013 26.7 16.5 131 139-284 350-521 (557)
283 KOG4227|consensus 32.5 5.3E+02 0.011 25.9 12.8 104 128-236 105-213 (609)
284 KOG1034|consensus 32.3 3.2E+02 0.0069 26.8 8.8 114 89-206 89-212 (385)
285 KOG4649|consensus 32.2 4.5E+02 0.0098 25.0 14.6 56 132-203 34-90 (354)
286 COG4247 Phy 3-phytase (myo-ino 30.7 4.8E+02 0.01 24.8 14.0 101 191-292 118-232 (364)
287 smart00284 OLF Olfactomedin-li 30.2 4.7E+02 0.01 24.6 14.9 102 132-236 131-242 (255)
288 KOG3881|consensus 29.8 4.9E+02 0.011 26.0 9.8 88 142-233 217-306 (412)
289 KOG3567|consensus 29.1 78 0.0017 32.2 4.3 54 241-296 445-498 (501)
290 KOG1963|consensus 28.9 5.6E+02 0.012 28.1 10.8 112 127-248 250-374 (792)
291 KOG2139|consensus 28.8 5.9E+02 0.013 25.4 17.0 181 108-294 218-431 (445)
292 KOG0639|consensus 28.7 6.9E+02 0.015 26.0 12.4 228 43-286 401-655 (705)
293 PRK11138 outer membrane biogen 28.6 5.7E+02 0.012 25.1 16.9 96 186-294 256-353 (394)
294 KOG0264|consensus 28.5 6.3E+02 0.014 25.5 15.6 125 124-250 223-348 (422)
295 TIGR03268 methan_mark_3 putati 28.2 97 0.0021 31.8 4.9 72 306-387 377-450 (503)
296 KOG0305|consensus 28.0 7E+02 0.015 25.9 15.9 151 124-282 297-450 (484)
297 KOG0273|consensus 27.9 6.8E+02 0.015 25.7 14.8 140 127-278 234-374 (524)
298 PF07433 DUF1513: Protein of u 27.1 5.8E+02 0.013 24.7 23.3 181 109-295 29-248 (305)
299 KOG4283|consensus 27.0 5.9E+02 0.013 24.7 15.8 139 108-250 25-177 (397)
300 KOG0640|consensus 26.9 6E+02 0.013 24.8 13.7 159 122-290 105-287 (430)
301 PF09910 DUF2139: Uncharacteri 26.5 4.2E+02 0.0091 25.7 8.4 79 195-282 18-96 (339)
302 COG1520 FOG: WD40-like repeat 25.6 6.3E+02 0.014 24.6 15.2 63 140-209 68-134 (370)
303 KOG2919|consensus 25.5 6.5E+02 0.014 24.7 10.9 150 143-298 125-285 (406)
304 TIGR03075 PQQ_enz_alc_DH PQQ-d 24.9 8.1E+02 0.017 25.6 14.7 51 178-236 237-287 (527)
305 KOG0276|consensus 24.8 8.9E+02 0.019 26.0 18.2 126 105-236 32-159 (794)
306 PF14251 DUF4346: Domain of un 24.7 1.9E+02 0.0041 23.8 5.0 60 134-206 12-71 (119)
307 KOG0290|consensus 24.6 6.2E+02 0.013 24.5 9.1 128 191-328 158-298 (364)
308 PF02191 OLF: Olfactomedin-lik 23.6 6E+02 0.013 23.7 17.1 102 132-236 126-237 (250)
309 COG1520 FOG: WD40-like repeat 23.6 6.9E+02 0.015 24.3 11.0 100 186-298 68-176 (370)
310 KOG0265|consensus 23.5 6.8E+02 0.015 24.2 16.7 175 108-292 69-244 (338)
311 PRK00969 hypothetical protein; 23.5 1.3E+02 0.0029 31.0 4.8 71 306-386 380-452 (508)
312 KOG0284|consensus 23.3 7.8E+02 0.017 24.9 10.5 152 91-249 181-337 (464)
313 TIGR03074 PQQ_membr_DH membran 23.2 1E+03 0.022 26.2 12.3 53 178-236 378-430 (764)
314 PRK10115 protease 2; Provision 21.0 1.1E+03 0.023 25.6 27.1 178 109-296 154-348 (686)
315 KOG4497|consensus 20.4 8.3E+02 0.018 24.1 11.6 105 128-236 48-152 (447)
No 1
>KOG1214|consensus
Probab=100.00 E-value=2.8e-38 Score=317.38 Aligned_cols=261 Identities=29% Similarity=0.513 Sum_probs=219.2
Q ss_pred ccCcccccccCCC--CceeE--EEEEeeCCCC-----CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC
Q psy13629 91 VQERCSFEKLQPD--GAYLL--DIRIANLSRP-----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 161 (395)
Q Consensus 91 ~~~~C~~~~~~~~--~~~~~--~I~~~~l~~~-----~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~ 161 (395)
+..+|+.+.+.+. ++|.+ .|....+.+. ...+++.-..+-++|||||..+++|||+|.....|.|+.++|.
T Consensus 978 p~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~ 1057 (1289)
T KOG1214|consen 978 PTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGA 1057 (1289)
T ss_pred CCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCC
Confidence 4456666544443 55555 4555555551 1223355556779999999999999999999999999999998
Q ss_pred CCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CC
Q psy13629 162 NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EV 240 (395)
Q Consensus 162 ~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~ 240 (395)
+.++++..++.+|+||||||+.+++||||+.+.+|+|+.|||+.+++|+.+++.+|++|++|+.+|.||||||. ++
T Consensus 1058 ---Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRen 1134 (1289)
T KOG1214|consen 1058 ---EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNREN 1134 (1289)
T ss_pred ---CCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred CeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeeccCCc
Q psy13629 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCNVFPK 317 (395)
Q Consensus 241 ~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d~ap~ 317 (395)
++|++.+||| .+++++++++++.||||++|++.+.|.|+|+++++++.+.++|..|++ .++..+ ++.-|
T Consensus 1135 PkIets~mDG--~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy------ 1206 (1289)
T KOG1214|consen 1135 PKIETSSMDG--ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSY------ 1206 (1289)
T ss_pred CcceeeccCC--ccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceeeeec------
Confidence 9999999999 999999999999999999999999999999999999999999999887 667776 77755
Q ss_pred cccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeEEEeecC
Q psy13629 318 TCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANS 386 (395)
Q Consensus 318 t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~l~ma~~ 386 (395)
....||++|+...|...++- ++.+.+++.+.......|+++.-..
T Consensus 1207 --------------~~~fY~TDWk~n~vvsv~~~----------~~~~td~~~p~~~s~lyGItav~~~ 1251 (1289)
T KOG1214|consen 1207 --------------ADHFYHTDWKRNGVVSVNKH----------SGQFTDEYLPEQRSHLYGITAVYPY 1251 (1289)
T ss_pred --------------cccceeeccccCceEEeecc----------ccccccccccccccceEEEEecccc
Confidence 45589999999888876543 3446666554444445788877654
No 2
>KOG0881|consensus
Probab=99.95 E-value=3.5e-29 Score=200.01 Aligned_cols=97 Identities=62% Similarity=1.081 Sum_probs=94.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.++..|.+.++||..++|.||.||..|+++|||+|..|||++++|+||||||+++|.||.+|+|..|+||...+|+|.+.
T Consensus 14 LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dLkhTGA 93 (164)
T KOG0881|consen 14 LETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDLKHTGA 93 (164)
T ss_pred EeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhhcccch
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCCCCC
Q psy13629 379 GVLSMANSGPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~~~~~~~sqf 395 (395)
|+|+|||+|||||||||
T Consensus 94 GILsMANaGPnTNgSQF 110 (164)
T KOG0881|consen 94 GILSMANAGPNTNGSQF 110 (164)
T ss_pred hhhhhhccCCCCCCceE
Confidence 99999999999999998
No 3
>KOG0883|consensus
Probab=99.94 E-value=1.2e-28 Score=230.91 Aligned_cols=109 Identities=70% Similarity=1.190 Sum_probs=105.0
Q ss_pred eeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCC
Q psy13629 287 FIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFE 366 (395)
Q Consensus 287 ~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~ 366 (395)
+-.++.-.|-.|.+|+.|.+.++|+-|.+|.+|+||+++|++|||+|+.|||.+++|+||||||+|+|.||++|||++|.
T Consensus 270 ry~rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFk 349 (518)
T KOG0883|consen 270 RYTRVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 349 (518)
T ss_pred hhccccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccc
Confidence 33566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 367 DEFKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 367 ~e~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
||+.+.|+|+.||+|||||.|||||||||
T Consensus 350 DEf~~~l~H~gRGvlSMANsGpnTNgSQF 378 (518)
T KOG0883|consen 350 DEFCSNLSHDGRGVLSMANSGPNTNGSQF 378 (518)
T ss_pred cccCCCCCcCCcceEeeccCCCCCCCceE
Confidence 99999999999999999999999999998
No 4
>KOG1214|consensus
Probab=99.92 E-value=5.9e-25 Score=221.88 Aligned_cols=201 Identities=22% Similarity=0.342 Sum_probs=177.5
Q ss_pred ccCcccccccCCCCceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE
Q psy13629 91 VQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 170 (395)
Q Consensus 91 ~~~~C~~~~~~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~ 170 (395)
+...|+.+-.-|..+.-+.|++..|.|.+..+++...+.+|.|||+|+..+.+||+|....+|.++.+||+ .+++++
T Consensus 1030 idfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~---~rkvLf 1106 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS---ERKVLF 1106 (1289)
T ss_pred eecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCc---eeeEEE
Confidence 34556655444545555788999999977788889999999999999999999999999999999999998 788999
Q ss_pred eCCCCCcceEEEecCCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 171 TNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 171 ~~~~~~p~glAVD~~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
..++.+|++|++|.+.++|||||+ ++..|++.+|||+++++++.+++.-|+||.+||-++.|.|.|.| ..|++....
T Consensus 1107 ~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG-t~rleC~~p 1185 (1289)
T KOG1214|consen 1107 YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG-TKRLECTLP 1185 (1289)
T ss_pred eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC-CcceeEecC
Confidence 999999999999999999999996 47799999999999999999999999999999999999999965 889999999
Q ss_pred CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 249 dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+| ..|+++. +++++|.+|+-+ ++.+||+||+.|.|.++++.+...+.
T Consensus 1186 ~g--~gRR~i~-~~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~~~td 1232 (1289)
T KOG1214|consen 1186 DG--TGRRVIQ-NNLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSGQFTD 1232 (1289)
T ss_pred CC--Ccchhhh-hcccCceeeeec--cccceeeccccCceEEeecccccccc
Confidence 99 6777655 468899999887 56699999999999999988877665
No 5
>KOG0546|consensus
Probab=99.91 E-value=1.5e-25 Score=210.46 Aligned_cols=93 Identities=55% Similarity=0.909 Sum_probs=88.5
Q ss_pred eeceeeeeeeeccCCccccceeeeeccc-----------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENG-----------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g-----------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~ 369 (395)
..|+|.++||.|.+|+|++||++||++. .|+|+.||||+++|||||||++ ++|+||.+|||..|+||
T Consensus 21 ~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDE- 99 (372)
T KOG0546|consen 21 PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDE- 99 (372)
T ss_pred ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccccccc-
Confidence 6788999999999999999999999852 5999999999999999999986 89999999999999999
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.+.++|+++|+|||||.|||||||||
T Consensus 100 nF~lKHdrpflLSMAN~GpNTNgSQF 125 (372)
T KOG0546|consen 100 NFELKHDRPFLLSMANRGPNTNGSQF 125 (372)
T ss_pred cceeccCcchhhhhhcCCCCCCCcce
Confidence 78999999999999999999999999
No 6
>KOG0882|consensus
Probab=99.90 E-value=4.8e-25 Score=210.72 Aligned_cols=95 Identities=60% Similarity=1.015 Sum_probs=94.0
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeE
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGV 380 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~ 380 (395)
|..|.+.+-||++.+|+|++||-..|++|||+|..|||++++|+||+|||.|.|+||++|||+.|+||+.+.|+|+++-+
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrhdrpft 490 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFT 490 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccccCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCC
Q psy13629 381 LSMANSGPNTNTSQL 395 (395)
Q Consensus 381 l~ma~~~~~~~~sqf 395 (395)
|||||+|||||||||
T Consensus 491 ~smanag~ntngsqf 505 (558)
T KOG0882|consen 491 VSMANAGPNTNGSQF 505 (558)
T ss_pred EEecccCCCCCCceE
Confidence 999999999999998
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-24 Score=185.86 Aligned_cols=93 Identities=54% Similarity=0.883 Sum_probs=83.3
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCC-CCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGT-GTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~-g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..++.|++.++||++.||+|++||++||+.+||+|+.|||++++|+|||||+.+. |++++. .+|++|+... .|.+
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~-~~~~ 79 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFAL-NGDR 79 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccc-cccc
Confidence 3478899999999999999999999999999999999999999999999999876 888874 8899995433 3444
Q ss_pred --CeEEEeecCC-CCCCCCCC
Q psy13629 378 --RGVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 378 --~G~l~ma~~~-~~~~~sqf 395 (395)
+|+|||||++ ||||||||
T Consensus 80 ~~~G~lsMA~~g~P~t~~SQF 100 (158)
T COG0652 80 HKRGTLSMARAGDPNSNGSQF 100 (158)
T ss_pred CCcceEeEcccCCcCCccCeE
Confidence 9999999999 99999998
No 8
>KOG1215|consensus
Probab=99.89 E-value=5.7e-22 Score=216.64 Aligned_cols=207 Identities=37% Similarity=0.729 Sum_probs=183.0
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
++|+.+.++.. .+....+....+.++++|..++.+||+|....+|.+...++.. ...+...+.-.+.++|+||+.+
T Consensus 417 ~~ir~~~~~~~-~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~---~~~~~~~g~~~~~~lavD~~~~ 492 (877)
T KOG1215|consen 417 HDIRRISLDCS-DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS---ECELCGDGLCIPEGLAVDWIGD 492 (877)
T ss_pred ccceecccCCC-cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCc---cceEeccCccccCcEEEEeccC
Confidence 48888888773 5666777778999999999999999999999999999999973 3446777889999999999999
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
++||+|.....|.+.+++|..+.+++...+..|+.++++|..+++||+||+..++|+|+.||| ..+..++..++.||+
T Consensus 493 ~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg--~~~~~l~~~~~~~p~ 570 (877)
T KOG1215|consen 493 NIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDG--SERAVLVTNGILWPN 570 (877)
T ss_pred CceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCC--CCceEEEeCCccCCC
Confidence 999999999999999999999999998888999999999999999999999767999999999 899999999999999
Q ss_pred eEEEeccccEEEEecccee-eeeeeccccceee-e--eeecee-eeeeeeccCCcccc
Q psy13629 268 GIAIDFNNRLLYWIDGRLT-FIEVMDYDGYVRL-V--TSLGHI-NLELYCNVFPKTCE 320 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~-~I~~~~~dG~~~~-~--t~~g~~-~i~Lf~d~ap~t~~ 320 (395)
||++|...+++||+|.... .|++++.+|..++ . ..+.++ .+++|++...++..
T Consensus 571 glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~ 628 (877)
T KOG1215|consen 571 GLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDW 628 (877)
T ss_pred cceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeec
Confidence 9999999999999999999 7999999999996 3 445566 88988554444433
No 9
>KOG0880|consensus
Probab=99.89 E-value=8.5e-24 Score=182.46 Aligned_cols=94 Identities=54% Similarity=0.870 Sum_probs=87.7
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc---c-eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN---G-YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTH 375 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~---g-~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~ 375 (395)
...+++.+.||...+|+|++||.+||.+ + -|.++.|||++++|+|||||.+ +.|.|+.+|+|++|+|| .+.|+|
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DE-Nf~LkH 129 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDE-NFKLKH 129 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCc-cceeec
Confidence 4678899999999999999999999983 2 3999999999999999999987 67999999999999999 579999
Q ss_pred CCCeEEEeecCCCCCCCCCC
Q psy13629 376 TGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~~~~~~sqf 395 (395)
+++|.|||||.|||||||||
T Consensus 130 ~rpG~lSMAn~GpDtNGsQF 149 (217)
T KOG0880|consen 130 DRPGRLSMANAGPDTNGSQF 149 (217)
T ss_pred CCCceEeeeccCCCCCCceE
Confidence 99999999999999999998
No 10
>KOG0884|consensus
Probab=99.88 E-value=5.9e-24 Score=169.12 Aligned_cols=96 Identities=58% Similarity=1.081 Sum_probs=93.4
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
.+..|.+.|++|-+.+|++|+||+++|...||+++.|||-+++|++|+|+++.+|+||.+|+|++|+||+..-|+|+.||
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh~~rg 85 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKHNVRG 85 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhhccce
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
.|+|||.|||+|||||
T Consensus 86 ~vsmanngp~tn~sqf 101 (161)
T KOG0884|consen 86 VVSMANNGPNTNGSQF 101 (161)
T ss_pred eEEcccCCCCCCCceE
Confidence 9999999999999998
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.87 E-value=1.5e-22 Score=174.43 Aligned_cols=96 Identities=61% Similarity=1.005 Sum_probs=91.7
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|++|+||+.++|.++.++++..+++|..+.++|.++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~~G 82 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDRPY 82 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCCCe
Confidence 46789999999999999999999999999999999999999999999999998999999999999999988889999899
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+||||+.+||+++|||
T Consensus 83 ~l~ma~~~~~s~~SqF 98 (148)
T cd01927 83 TLSMANAGPNTNGSQF 98 (148)
T ss_pred EEEEeeCCCCCCCceE
Confidence 9999999999999998
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.86 E-value=1.9e-22 Score=174.77 Aligned_cols=98 Identities=63% Similarity=1.180 Sum_probs=92.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+|+.|||++++|++|+||+.++|+++.++++..+++|..+.++|+.
T Consensus 4 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~~ 83 (153)
T cd01928 4 TLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKHDS 83 (153)
T ss_pred EEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCcCC
Confidence 34578999999999999999999999999999999999999999999999999989999999999999999877888988
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+||||+++||++||||
T Consensus 84 ~G~v~ma~~~~~~~~SqF 101 (153)
T cd01928 84 RGVVSMANNGPNTNGSQF 101 (153)
T ss_pred CcEEEEeeCCCCCcccEE
Confidence 999999999999999998
No 13
>KOG0879|consensus
Probab=99.86 E-value=5.1e-23 Score=166.64 Aligned_cols=94 Identities=50% Similarity=0.913 Sum_probs=88.4
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCC-CCCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDP-TGTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~-~~~g~~~~~~~~~~~~~e~~~ 371 (395)
...|++.++||.|.+|+|++||.++|+..| |+++.|||++++|+|||||+ .+.|+|..+|+|.+|+|| .+
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DE-NF 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDE-NF 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCc-ce
Confidence 467889999999999999999999999876 99999999999999999997 488999999999999999 67
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|.++|+|||||+|++|||+||
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQF 124 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQF 124 (177)
T ss_pred eeecCCCceeeccccCCCCCCceE
Confidence 899999999999999999999998
No 14
>KOG0885|consensus
Probab=99.86 E-value=7.1e-23 Score=191.67 Aligned_cols=102 Identities=52% Similarity=1.008 Sum_probs=97.7
Q ss_pred ccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCC
Q psy13629 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 294 dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
.|.....|..|.|.|+|....+|.+|.||++||-.|||+|+.|||++|+|.+|||||+++|+||.+|+|.+|++|++++|
T Consensus 12 tgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rl 91 (439)
T KOG0885|consen 12 TGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRL 91 (439)
T ss_pred cceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCcce
Confidence 35555668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++.+||+|+|||++.+.|||||
T Consensus 92 rf~rrGlvgmana~~~~ngsqF 113 (439)
T KOG0885|consen 92 RFNRRGLVGMANAGNDDNGSQF 113 (439)
T ss_pred eeeccceeeecccCCCCCCceE
Confidence 9999999999999999999998
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.86 E-value=3.4e-22 Score=171.78 Aligned_cols=96 Identities=66% Similarity=1.127 Sum_probs=91.5
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|++|+||+.++|.++.++++.++++|..+.++|+++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~~G 82 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTGAG 82 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCCCe
Confidence 46789999999999999999999999999999999999999999999999988889999999999999977889999999
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+||||+.+||+++|||
T Consensus 83 ~l~ma~~~~~s~~sqF 98 (146)
T cd01922 83 ILSMANAGPNTNGSQF 98 (146)
T ss_pred EEEEeeCCCCCCccEE
Confidence 9999999999999998
No 16
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.85 E-value=6.7e-22 Score=172.50 Aligned_cols=98 Identities=77% Similarity=1.328 Sum_probs=92.9
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||+||+.++|.++.++++..+++|..+.++|+.
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~~ 82 (159)
T cd01923 3 RLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHDG 82 (159)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcCC
Confidence 34578999999999999999999999999999999999999999999999999989999999999999999878888999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+||||+.+||++||||
T Consensus 83 ~G~v~ma~~~~~s~~sqF 100 (159)
T cd01923 83 RGVLSMANSGPNTNGSQF 100 (159)
T ss_pred CcEEEEeeCCCCCcccEE
Confidence 999999999999999998
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.85 E-value=9.4e-22 Score=173.52 Aligned_cols=101 Identities=52% Similarity=0.990 Sum_probs=94.6
Q ss_pred cceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy13629 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYT 374 (395)
Q Consensus 295 G~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~ 374 (395)
|+....|+.|.+.++||.+.+|.+++||+.||+.+||+++.|||++++|+||+||+.++|.++.+++|..+++|..+.++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 44455689999999999999999999999999999999999999999999999999989999999999999999877888
Q ss_pred CCCCeEEEeecCCCCCCCCCC
Q psy13629 375 HTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 375 ~~~~G~l~ma~~~~~~~~sqf 395 (395)
|+++|+||||+.++++++|||
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqF 106 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQF 106 (171)
T ss_pred CCCCcEEEECcCCCCCcccEE
Confidence 889999999999999999998
No 18
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.83 E-value=3.1e-21 Score=169.59 Aligned_cols=96 Identities=44% Similarity=0.773 Sum_probs=88.3
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCC-------CCCCCCCCCC
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWG-------KPFEDEFKPN 372 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~-------~~~~~e~~~~ 372 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||+||+.++|.++.++++ ..+++|..+.
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~ 82 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILPL 82 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccCCc
Confidence 467899999999999999999999999999999999999999999999999888888887764 3577887778
Q ss_pred CCCCCCeEEEeecCCCCCCCCCC
Q psy13629 373 YTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 373 ~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++|+.+|+||||+.++|+++|||
T Consensus 83 ~~h~~~G~l~ma~~~~~~~~SQF 105 (166)
T cd01921 83 LKHSKKGTVSMVNAGDNLNGSQF 105 (166)
T ss_pred cccCCceEEEEeECCCCCccceE
Confidence 89989999999999999999998
No 19
>KOG0111|consensus
Probab=99.82 E-value=2.7e-21 Score=169.28 Aligned_cols=94 Identities=54% Similarity=0.850 Sum_probs=87.8
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--ce-ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--GY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--g~-y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
...|++.+.|..|..|.|++||.+||.. || |+|+.|||++|.|++||||++ ++|+||.+|||..|.|| .+.|+|.
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdde-nf~lkht 226 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDE-NFTLKHT 226 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccc-ceeeecC
Confidence 3567789999999999999999999974 55 999999999999999999987 89999999999999999 6789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+|+|||+|+|||||||
T Consensus 227 ~pgtlsmansgantngsqf 245 (298)
T KOG0111|consen 227 MPGTLSMANSGANTNGSQF 245 (298)
T ss_pred CCceeeccccCCCCCCceE
Confidence 9999999999999999998
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.78 E-value=1.8e-19 Score=157.60 Aligned_cols=94 Identities=35% Similarity=0.635 Sum_probs=79.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|..|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||||++. .+.+. ..++..+.+|....++| .+
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~-~~~~~-~~~~~~~~~e~~~~~~~-~~ 80 (164)
T PRK10791 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE-PGMKQ-KATKEPIKNEANNGLKN-TR 80 (164)
T ss_pred EEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC-CCCCc-CCCCCCcCCcccccccC-CC
Confidence 44789999999999999999999999999999999999999999999999864 22221 22356778886666666 59
Q ss_pred eEEEeecCC-CCCCCCCC
Q psy13629 379 GVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~~-~~~~~sqf 395 (395)
|+||||+.+ ||+|||||
T Consensus 81 G~lsma~~~~p~s~~SQF 98 (164)
T PRK10791 81 GTLAMARTQAPHSATAQF 98 (164)
T ss_pred cEEEECCCCCcCCccceE
Confidence 999999985 99999998
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.77 E-value=3.2e-19 Score=159.63 Aligned_cols=95 Identities=37% Similarity=0.561 Sum_probs=80.2
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|..|.+.++||.+.+|.+++||++||+.+||+|+.|||++++|+||||++.+...+ ..++..+.+|....++| .
T Consensus 32 ~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~~~l~~-~ 108 (190)
T PRK10903 32 LLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADNGLRN-T 108 (190)
T ss_pred EEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCcccccCcC-C
Confidence 34588999999999999999999999999999999999999999999999997643222 22356788886556654 5
Q ss_pred CeEEEeecCC-CCCCCCCC
Q psy13629 378 RGVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~-~~~~~sqf 395 (395)
+|+|||||.+ ||+|||||
T Consensus 109 ~G~lama~~~~~~sn~SQF 127 (190)
T PRK10903 109 RGTIAMARTADKDSATSQF 127 (190)
T ss_pred CcEEEeCCCCCCCCcccEE
Confidence 9999999875 99999998
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.77 E-value=3.6e-19 Score=154.64 Aligned_cols=93 Identities=40% Similarity=0.592 Sum_probs=78.9
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|..|.+.++||.+.+|.+++||+.||+.+||+++.|||++++|+||+|++...+.+. .++..+.+|....++ +.+|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~--~~~~~~~~e~~~~~~-~~~G 79 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK--ETLKPIKNEAGNGLS-NTRG 79 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc--ccCCcccCccccccc-CCce
Confidence 3678899999999999999999999999999999999999999999999987444332 235667778555554 5699
Q ss_pred EEEeecCC-CCCCCCCC
Q psy13629 380 VLSMANSG-PNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~-~~~~~sqf 395 (395)
+||||+.+ ||+|+|||
T Consensus 80 ~v~ma~~~~~~s~~SqF 96 (155)
T cd01920 80 TIAMARTNAPDSATSQF 96 (155)
T ss_pred EEEECCCCCCCCccceE
Confidence 99999875 99999998
No 23
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.76 E-value=4.4e-19 Score=156.90 Aligned_cols=95 Identities=35% Similarity=0.632 Sum_probs=78.3
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCC---------------------Ccc
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG---------------------GES 359 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~---------------------~~~ 359 (395)
|+.|.+.++||.+.+|.++.||+.||+.+||+++.|||++++|+||+||+.+.+.+ +.+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~ 83 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQP 83 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCC
Confidence 57888999999999999999999999999999999999999999999998755433 223
Q ss_pred cCCCCCC----CCCCCCCCCCCCeEEEeecCC--CCCCCCCC
Q psy13629 360 IWGKPFE----DEFKPNYTHTGRGVLSMANSG--PNTNTSQL 395 (395)
Q Consensus 360 ~~~~~~~----~e~~~~~~~~~~G~l~ma~~~--~~~~~sqf 395 (395)
+++..+. ++..+...|+.+|+|||||.+ ||+++|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQF 125 (176)
T cd01924 84 VYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQF 125 (176)
T ss_pred ccCcccccccccccccccccCCCCeEEEccCCCCCCCccceE
Confidence 4444432 232345567779999999987 79999998
No 24
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.76 E-value=5.8e-19 Score=157.51 Aligned_cols=93 Identities=55% Similarity=0.930 Sum_probs=84.6
Q ss_pred eeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCC-CCCCCCCcccCCCCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDP-TGTGTGGESIWGKPFEDEFKPN 372 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~-~~~g~~~~~~~~~~~~~e~~~~ 372 (395)
..|++.++||.+.+|.+++||+.||+.++ |+++.|||++++|+||+||+ .+.|+|+.++++..|++|. ..
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~-~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDEN-FI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCcc-cc
Confidence 57889999999999999999999997654 99999999999999999996 4778888899999999885 45
Q ss_pred CCCCCCeEEEeecCCCCCCCCCC
Q psy13629 373 YTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 373 ~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++|+.+|+||||+.+||+++|||
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqF 132 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQF 132 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEE
Confidence 67888999999999999999998
No 25
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.75 E-value=1.2e-18 Score=152.96 Aligned_cols=94 Identities=57% Similarity=0.969 Sum_probs=85.6
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cc------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NG------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+..|.+.++||.+.+|.+++||++||+ .+ +|+++.|||++++|+||+||+. ++|.++.++++..+++| ..
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e-~~ 90 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDE-NF 90 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCC-Cc
Confidence 368889999999999999999999998 35 8999999999999999999974 67888889999999988 45
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|+.+|+||||+.+||+++|||
T Consensus 91 ~~~h~~~G~lsma~~~~~~~~sqF 114 (164)
T cd01926 91 KLKHTGPGLLSMANAGPNTNGSQF 114 (164)
T ss_pred cccCCCccEEEeeECCCCCcccEE
Confidence 788988999999999999999998
No 26
>PTZ00060 cyclophilin; Provisional
Probab=99.74 E-value=2e-18 Score=153.86 Aligned_cols=94 Identities=54% Similarity=0.850 Sum_probs=85.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeec---------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE---------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFK 370 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~---------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~ 370 (395)
+..|.+.++||.+.+|.+++||++||+ .++|+++.|||++++++||+||+. ++|.++.+++|..+++| .
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e-~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDE-N 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCc-c
Confidence 357889999999999999999999996 569999999999999999999975 57888888999999888 4
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..++|..+|+||||+.++|+++|||
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqF 130 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQF 130 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceE
Confidence 5778988999999999999999998
No 27
>PTZ00221 cyclophilin; Provisional
Probab=99.71 E-value=7.9e-18 Score=155.02 Aligned_cols=90 Identities=34% Similarity=0.431 Sum_probs=78.9
Q ss_pred eeceeeeeeeeccCCccccceeeeeccc-----------eecceeEEEEecC-cEEEecCCCCCCCCCcccCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENG-----------YYNGTKFHRSIRN-FMIQGGDPTGTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g-----------~y~~~~~~r~~~~-~~iq~g~~~~~g~~~~~~~~~~~~~e~ 369 (395)
..|++.++||.+.+|.|++||+.||++. +|+++.|||++++ |+||+||+.+. +.+++|..|++|.
T Consensus 65 ~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g~s~~G~~f~dE~ 141 (249)
T PTZ00221 65 LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---NVSSTGTPIADEG 141 (249)
T ss_pred ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---CccCCCCcccCcc
Confidence 5678999999999999999999999743 3999999999986 89999998643 3456788999994
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|+++|+||||+.+||+|||||
T Consensus 142 -~~~~h~~~G~LsMan~GpntngSQF 166 (249)
T PTZ00221 142 -YRHRHTERGLLTMISEGPHTSGSVF 166 (249)
T ss_pred -ccccCCCCCEEEeCcCCCCCccceE
Confidence 5778999999999999999999999
No 28
>KOG0415|consensus
Probab=99.68 E-value=1.9e-17 Score=154.32 Aligned_cols=98 Identities=47% Similarity=0.809 Sum_probs=92.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCC-------CCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGK-------PFEDEFK 370 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~-------~~~~e~~ 370 (395)
.++|.+|.+.|.||-+..|.+|-||++||+-.||+.+.||.+.++|.+|.|||+|+|.||.+|||. .|..|+.
T Consensus 4 lieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE~~ 83 (479)
T KOG0415|consen 4 LIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAEFL 83 (479)
T ss_pred EEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhhhc
Confidence 345889999999999999999999999999999999999999999999999999999999999853 3788999
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|.+.|+|||++.|.|-+||||
T Consensus 84 p~l~Hsk~G~vsmvs~g~n~~gSQF 108 (479)
T KOG0415|consen 84 PKLKHSKMGTVSMVSAGENLNGSQF 108 (479)
T ss_pred ccccccccceEEeecCCcccccceE
Confidence 9999999999999999999999998
No 29
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.66 E-value=8.2e-17 Score=138.75 Aligned_cols=95 Identities=58% Similarity=0.865 Sum_probs=84.0
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.++|+++.|||+++++++|+|++...+.++ +.++..+++|..+...|+.+|
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~~G 81 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHRRG 81 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCCCc
Confidence 3567889999999999999999999999999999999999999999999987554432 455778999988777677899
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+|+|++.++++++|||
T Consensus 82 ~v~~~~~~~~~~~sqF 97 (146)
T cd00317 82 TLSMANAGPNTNGSQF 97 (146)
T ss_pred EEEEeeCCCCCcccEE
Confidence 9999999999999998
No 30
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.62 E-value=1.1e-13 Score=129.51 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=129.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-----CCCCcceEEEe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-----GLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~glAVD 183 (395)
.|.+++.++ ......... .+.|++++..++.||+++... +.+++.+.. ..+.+... ....|+++++|
T Consensus 23 ~i~~~~~~~-~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 23 RIYRVDPDT-GEVEVIDLP--GPNGMAFDRPDGRLYVADSGG--IAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVD 94 (246)
T ss_dssp EEEEEETTT-TEEEEEESS--SEEEEEEECTTSEEEEEETTC--EEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-
T ss_pred EEEEEECCC-CeEEEEecC--CCceEEEEccCCEEEEEEcCc--eEEEecCCC---cEEEEeeccCCCcccCCCceEEEc
Confidence 567788776 333332222 299999997779999999543 344466654 33444432 56789999999
Q ss_pred cCCCeEEEEeCCC--------CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC---C
Q psy13629 184 WLTEKLYWTDSET--------NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD---P 252 (395)
Q Consensus 184 ~~~~~LYwtd~~~--------~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~---~ 252 (395)
+ .|+||+++... ++|++++.+++ ...+. ..+..|+||+++|+++.||++| ....+|.+++++.. .
T Consensus 95 ~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~d-s~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 95 P-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVAD-SFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEE-TTTTEEEEEEEETTTCCE
T ss_pred C-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecc-cccceeEEEeccccccce
Confidence 8 67799999543 67999999944 33444 6789999999999999999999 44788999999742 1
Q ss_pred cceEEEEecC--CcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 253 RHRKVIVDST--IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 253 ~~~~~lv~~~--~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.+++.+.... .+.|.||++| .+++||+++...++|.+++.+|.....
T Consensus 171 ~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 171 SNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLRE 219 (246)
T ss_dssp EEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEE
T ss_pred eeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEE
Confidence 2345554433 2359999999 577999999999999999999886654
No 31
>KOG0865|consensus
Probab=99.60 E-value=2.4e-16 Score=136.43 Aligned_cols=94 Identities=54% Similarity=0.912 Sum_probs=84.0
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc--e-ecceeEEE---EecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG--Y-YNGTKFHR---SIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g--~-y~~~~~~r---~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
..++++.++||.|..|.|++||.+++... + |++..||| .+++|++|+||.+ ++|+|+.+|+++.|+|| .+.+
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~De-nFil 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDE-NFIL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCc-CcEE
Confidence 35566889999999999999999999742 2 89999999 4457999999986 78999999999999999 6799
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+|..+|+|+|||.+||+|||||
T Consensus 94 khtgpGiLSmaNagpntngsqf 115 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQF 115 (167)
T ss_pred ecCCCCeeehhhcCCCccccEE
Confidence 9999999999999999999998
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=2.8e-13 Score=149.85 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=138.3
Q ss_pred EEEEEeeCCCCCccEEecC--------------CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-
Q psy13629 108 LDIRIANLSRPLKPVTIIK--------------DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN- 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~--------------~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~- 172 (395)
+.|++++.++ .....+-. .+..|.||++|..++.||++|..+++|+++++.+. ...++...
T Consensus 590 ~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G 665 (1057)
T PLN02919 590 NRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNG 665 (1057)
T ss_pred CeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccC
Confidence 4678888876 22222211 24579999999999999999999999999998764 22333211
Q ss_pred ---------------CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe--------------cCCCCceeE
Q psy13629 173 ---------------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW--------------EDIDQPRAI 223 (395)
Q Consensus 173 ---------------~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~--------------~~~~~P~~i 223 (395)
.+..|.++++|+.++.||++|..+++|.+.+..+....++.. ..+..|.||
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI 745 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI 745 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE
Confidence 156899999999899999999999999999987665544321 135789999
Q ss_pred EEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe---------------------cCCcCceeEEEeccccEEEEec
Q psy13629 224 ALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD---------------------STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 224 avdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~---------------------~~~~~P~glalD~~~~rLYwaD 282 (395)
+++|..++||++|.+ ..+|.++++++ ....++.. ..+..|.|+++|. +++||++|
T Consensus 746 avspdG~~LYVADs~-n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVAD 821 (1057)
T PLN02919 746 SLSPDLKELYIADSE-SSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVAD 821 (1057)
T ss_pred EEeCCCCEEEEEECC-CCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEE
Confidence 999999999999954 78999999975 23333321 1245799999994 45799999
Q ss_pred cceeeeeeeccccceee
Q psy13629 283 GRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 283 ~~~~~I~~~~~dG~~~~ 299 (395)
..+++|.+++.++....
T Consensus 822 s~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCEEEEEECCCCeEE
Confidence 99999999998765544
No 33
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.58 E-value=1.9e-13 Score=127.82 Aligned_cols=153 Identities=27% Similarity=0.319 Sum_probs=120.8
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
+.|..||..++.|||+|...++|++++.++. . ..++.. ..|.|++++..++.||+++. ..+.+.+++....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~-~~~~~~--~~~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG---E-VEVIDL--PGPNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTT---E-EEEEES--SSEEEEEEECTTSEEEEEET--TCEEEEETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCC---e-EEEEec--CCCceEEEEccCCEEEEEEc--CceEEEecCCCcEE
Confidence 5789999999999999999999999999985 2 222222 23999999977899999996 44555598887777
Q ss_pred EEEec-----CCCCceeEEEeCCCCeEEEEeeCCC-------CeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEE
Q psy13629 211 VLYWE-----DIDQPRAIALVPQDSIMFWTDWGEV-------PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 211 ~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~-------~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rL 278 (395)
.+... ....|+++++|+ .|.||+|+.+.. .+|++++.+| . . ..+...+..||||+++++++.|
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--~-~-~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG--K-V-TVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS--E-E-EEEEEEESSEEEEEEETTSSEE
T ss_pred EEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC--e-E-EEEecCcccccceEECCcchhe
Confidence 76653 578899999998 567999996521 5699999997 3 2 2334457889999999999999
Q ss_pred EEeccceeeeeeeccccc
Q psy13629 279 YWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~ 296 (395)
||+|...++|.+++++..
T Consensus 149 yv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEETTTTEEEEEEEETT
T ss_pred eecccccceeEEEecccc
Confidence 999999999999998743
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=2.4e-13 Score=150.29 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=133.4
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-------------CCCCCcceEEEecCCCeE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-------------NGLITPDGLAIDWLTEKL 189 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-------------~~~~~p~glAVD~~~~~L 189 (395)
.+...+..|.++++|..++.||++|..+++|.+++.+|. ....+.. ..+..|.||++|..++.|
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 445677889999999999999999999999999999885 1111211 125679999999988889
Q ss_pred EEEeCCCCeEEEEECCCCceEEEEec----------------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 190 YWTDSETNKLEVSSLDGKKRKVLYWE----------------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~~~l~~~----------------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
|++|..+++|.++++.+...+++... .+..|.+++++|.++.||++|++ ..+|.+.+..+ .
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~--g 715 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISD--G 715 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCC--C
Confidence 99999999999999988776666421 15689999999999999999965 77888888754 2
Q ss_pred ceEEEEe--------------cCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 254 HRKVIVD--------------STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 254 ~~~~lv~--------------~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
...++.. ..+..|+||+++.++++||++|..+++|.++++++..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 2222211 1356899999998888999999999999999987543
No 35
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.52 E-value=1.1e-14 Score=126.84 Aligned_cols=95 Identities=56% Similarity=0.942 Sum_probs=78.3
Q ss_pred eee-eceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCC-C-cccCCCCCCCCCC-CCCCC
Q psy13629 300 VTS-LGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG-G-ESIWGKPFEDEFK-PNYTH 375 (395)
Q Consensus 300 ~t~-~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~-~-~~~~~~~~~~e~~-~~~~~ 375 (395)
+++ .|++.++||.+.+|.+++||++||+.++|+++.|||++++++||+|++...+.. . ....+..+++|.. ..+.|
T Consensus 5 ~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~ 84 (155)
T PF00160_consen 5 ETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKH 84 (155)
T ss_dssp EETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSS
T ss_pred EeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccccccc
Confidence 354 899999999999999999999999999999999999999999999998754431 1 1223446888865 34556
Q ss_pred CCCeEEEeecCC--CCCCCCCC
Q psy13629 376 TGRGVLSMANSG--PNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~--~~~~~sqf 395 (395)
.+|+|+|++.+ +|+++|||
T Consensus 85 -~~G~v~~~~~~~~~~~~~sqF 105 (155)
T PF00160_consen 85 -RRGLVSMARSGKDPNSNGSQF 105 (155)
T ss_dssp -STTEEEEEBSSSSTTEBSSEE
T ss_pred -cceeeeecccccCCCCCCceE
Confidence 69999999986 89999998
No 36
>KOG1215|consensus
Probab=99.45 E-value=1.9e-12 Score=142.10 Aligned_cols=177 Identities=23% Similarity=0.377 Sum_probs=146.5
Q ss_pred EEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEE
Q psy13629 111 RIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LY 190 (395)
-....++.........+.-.+.++++|+..+.+||+|.....|.+..++|+ .+.+++...+..|+.+++|+..+.+|
T Consensus 462 ~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~~l~~~r~~~v~p~~g~~~ 538 (877)
T KOG1215|consen 462 CRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSKDLDLPRSIAVDPEKGLMF 538 (877)
T ss_pred eeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEecCCCCccceeeccccCeeE
Confidence 334444433333456678889999999999999999999999999999997 56777777779999999999999999
Q ss_pred EEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 191 WTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 191 wtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
|+|.. ..+|.++.+||..+.+++..+...|+|+++|-..+.+||.|......|+.++++| ..++.........|.++
T Consensus 539 wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g--~~r~~~~~~~~~~p~~~ 616 (877)
T KOG1215|consen 539 WTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDG--QNRRVVDSEDLPHPFGL 616 (877)
T ss_pred EecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCC--CceEEeccccCCCceEE
Confidence 99987 5589999999999999998889999999999999999999955444799999999 77774444556566666
Q ss_pred EEeccccEEEEeccceeeeeeeccc
Q psy13629 270 AIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 270 alD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
++ .++++||+|+....+......
T Consensus 617 ~~--~~~~iyw~d~~~~~~~~~~~~ 639 (877)
T KOG1215|consen 617 SV--FEDYIYWTDWSNRAISRAEKH 639 (877)
T ss_pred EE--ecceeEEeeccccceEeeecc
Confidence 65 589999999998877666643
No 37
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=2.1e-10 Score=112.85 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=124.9
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC--CCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN--VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~--~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+...++..+.++++++.||++|.+.++|+.++++... +.....+.......|+.|++++.++.+|+++...+.|.+++
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 3567899999999999999999999999999998753 22233444566688999999999999999999999999999
Q ss_pred CCC-CceEEE---Eec---C---CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc--ceEEEEecCCcCceeEEE
Q psy13629 204 LDG-KKRKVL---YWE---D---IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR--HRKVIVDSTIFWPNGIAI 271 (395)
Q Consensus 204 ldg-~~~~~l---~~~---~---~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~--~~~~lv~~~~~~P~glal 271 (395)
++. ...... +.. . ...|.+|+++|+.++||+++.+ ...|...++|.... .....+...-.+|.+|++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 882 222111 111 1 2379999999999999999955 77888888854211 122223334567999999
Q ss_pred eccccEEEEeccceeeeeeecccc
Q psy13629 272 DFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 272 D~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
|++++.||+++...+.|.+++.|.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCEEEEEecCCCeEEEEEEeC
Confidence 999999999999999998887653
No 38
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=3.7e-10 Score=108.60 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=122.1
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-----------------------------------CceEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-----------------------------------GSKHNVI 170 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-----------------------------------~~~~~i~ 170 (395)
....-..|-.|+++.+.|||+|...++|++.+.+.... ....+++
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLL 101 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEe
Confidence 33344566678888888888888888888887752210 0000111
Q ss_pred e-----CCCCCcceEEEecCCCeEEEEeCC-----------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEE
Q psy13629 171 T-----NGLITPDGLAIDWLTEKLYWTDSE-----------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW 234 (395)
Q Consensus 171 ~-----~~~~~p~glAVD~~~~~LYwtd~~-----------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYw 234 (395)
. ....+|+++.||+ .|.+|+++.. .+.+++++++|...+.+. ..+..|||||++|+++.||+
T Consensus 102 ~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence 1 1236899999998 5899999865 246888888655554443 56999999999999999999
Q ss_pred EeeCCCCeEEEEecC---CCCcceEEEEec--CCcCceeEEEeccccEEE-Eeccceeeeeeeccccceeee
Q psy13629 235 TDWGEVPKIERGAMN---GDPRHRKVIVDS--TIFWPNGIAIDFNNRLLY-WIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 235 td~~~~~~I~~~~~d---G~~~~~~~lv~~--~~~~P~glalD~~~~rLY-waD~~~~~I~~~~~dG~~~~~ 300 (395)
+|.. ..+|++++++ |...++...+.. .-+.|.|+++| .+++|| ++-+...+|.+.+.+|....+
T Consensus 180 aDT~-~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 180 ADTP-ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred EeCC-CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEE
Confidence 9944 7899999998 554455434443 35799999999 667777 555555699999999877665
No 39
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.17 E-value=2e-08 Score=97.87 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=119.6
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....|.++++++.++.||.++...+.|..++++.........-.......|.++++++.++.+|.++...++|.+++++.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 34578999999999999999988899988888632110111111234467999999999999999999999999999975
Q ss_pred CceE------EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE--e---c---CCcCceeEEEe
Q psy13629 207 KKRK------VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV--D---S---TIFWPNGIAID 272 (395)
Q Consensus 207 ~~~~------~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv--~---~---~~~~P~glalD 272 (395)
.... ..-......|++++++|..++||+++.. ...|...+++......+.+. . . .-.+|.+++++
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 3211 1111345779999999999999999954 57788888762101111111 1 1 12356679999
Q ss_pred ccccEEEEeccceeeeeeeccc
Q psy13629 273 FNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 273 ~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++++||+++...+.|..++++
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEe
Confidence 9999999999888999888774
No 40
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.11 E-value=1.6e-08 Score=98.50 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=127.2
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~~~~~p~glAVD~~ 185 (395)
.|..++++.... .....+..+.+..|+++++++.||++....+.|..+++++.. ....+ .......|.+|++++.
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESPLPGSPTHISTDHQ 90 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeecCCCCceEEEECCC
Confidence 466666642122 223334456788999999999999998888889888876321 11111 1122347999999999
Q ss_pred CCeEEEEeCCCCeEEEEECCC--CceEEEE-ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce----EEE
Q psy13629 186 TEKLYWTDSETNKLEVSSLDG--KKRKVLY-WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR----KVI 258 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg--~~~~~l~-~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~----~~l 258 (395)
++.||.++...+.|.+++++. ...+.+- ......|.+++++|.++++|+++.+ ..+|...+++....-. ...
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-EDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-CCEEEEEEECCCCcccccCCCce
Confidence 999999998889999998863 2211111 1345679999999999999999965 6778888886411110 001
Q ss_pred EecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
-...-..|+++++++++++||+++...+.|...+++
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 111123699999999999999999989999988886
No 41
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=4.5e-08 Score=96.30 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=129.9
Q ss_pred EEEEeeCCC-CCccE--EecCCCCCeEEEEEEcCCCEEEEEEC---CCCeEEEEEccCC--CCCceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSR-PLKPV--TIIKDLEEGAAIDYYYKKSMVCWTDH---GTEMISCCTFDGN--NVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~--~~~~~~~~~~gl~~d~~~~~lywsd~---~~~~I~~~~~dg~--~~~~~~~i~~~~~~~p~gl 180 (395)
.|..++++. ..... .......+|..|++|+.++.||.++. ..+.|..+.++.. .+..... .......|..|
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~~~g~~p~~i 92 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VPSGGSSPCHI 92 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EEESSSCEEEE
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee-eccCCCCcEEE
Confidence 455555533 13332 22446788999999999999999997 4678888877753 2211111 22256789999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEECCCCce--EE--EEe----------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 181 AIDWLTEKLYWTDSETNKLEVSSLDGKKR--KV--LYW----------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~~I~v~~ldg~~~--~~--l~~----------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
++|+.++.||+++...+.|.+++++.... .. ++. ....+|..+.++|++++||++|.+ ..+|...
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-~D~v~~~ 171 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-ADRVYVY 171 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-TTEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-CCEEEEE
Confidence 99999999999999999999999876422 22 221 235789999999999999999976 7889999
Q ss_pred ecCCCCcce---EEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 247 AMNGDPRHR---KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 247 ~~dG~~~~~---~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++.....- ..+.-..-..|..|+++++++++|+++...+.|.+++++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 998631111 112122345799999999999999999999999999887
No 42
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.5e-08 Score=99.39 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=139.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|.+++... .........-..|.++++++.++.+|++|. .+++|..++..... ..........|.++++|+.
T Consensus 96 ~~v~vid~~~-~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----~~~~~~vG~~P~~~a~~p~ 170 (381)
T COG3391 96 NTVSVIDTAT-NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----VTATIPVGNTPTGVAVDPD 170 (381)
T ss_pred CeEEEEcCcc-cceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----EEEEEecCCCcceEEECCC
Confidence 3677788655 444444444448999999999999999998 46899999888652 1111222337899999999
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEE-----EEecCCCCceeEEEeCCCCeEEEEeeCC-CCeEEEEecCCCCcceEE--
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKV-----LYWEDIDQPRAIALVPQDSIMFWTDWGE-VPKIERGAMNGDPRHRKV-- 257 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~-----l~~~~~~~P~~iavdp~~g~LYwtd~~~-~~~I~~~~~dG~~~~~~~-- 257 (395)
+.++|.++...+.|.+.+.++..... .+ .....|.+++++|...++|+++... ...+.+.+... .....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~~~~ 247 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVTATD 247 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEEEec
Confidence 99999999999999999988876553 12 4578999999999999999999652 25787777765 22222
Q ss_pred EEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
...... +|.++++++.++.+|+++...+.++.++.....+..
T Consensus 248 ~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 248 LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 222334 799999999999999999888999999887765554
No 43
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.96 E-value=1.9e-09 Score=72.15 Aligned_cols=42 Identities=36% Similarity=0.955 Sum_probs=38.4
Q ss_pred CeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEec
Q psy13629 230 SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDF 273 (395)
Q Consensus 230 g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~ 273 (395)
++||||||+..++|+++++|| +++++++..++.+|.|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dG--s~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDG--SNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTS--TSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCC--CCeEEEEECCCCCcCEEEECC
Confidence 589999988556999999999 889999999999999999994
No 44
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.2e-07 Score=94.40 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=135.1
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeE
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~L 189 (395)
+.+++..+ ............|.++++++.+.++|+++...+.+..++.. .. ........+...|.+++++..+.++
T Consensus 13 ~~v~~~~~-~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGT-NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecc-cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeE
Confidence 44444433 44555555556899999999999999999877766655554 21 1122222333789999999999999
Q ss_pred EEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 190 YWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|.++...+.|.+.+.+.......+ .-...|.+++++|..+.+|+++.+ ....|..++-+......++.+. ..|.+
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---~~P~~ 164 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSI-PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---NTPTG 164 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEe-eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---CCcce
Confidence 999999999999997776665444 233499999999999999999975 4788988888762222222222 25999
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
+++|+.++++|++|...++|..++..+....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 9999999999999999999999998776555
No 45
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.3e-07 Score=88.23 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=124.1
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
..++....+++.++.|+..|.+..+|..++++.+.+.............|+.|++.+..+..|....-+++|.++..++.
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 33477888999999999999999999999998655433333334566789999999999999999999999999998874
Q ss_pred c--eEEE--Ee------cCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEE---ecCCcCceeEEEec
Q psy13629 208 K--RKVL--YW------EDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIV---DSTIFWPNGIAIDF 273 (395)
Q Consensus 208 ~--~~~l--~~------~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv---~~~~~~P~glalD~ 273 (395)
. .+.+ +. .+-.+-.+|.++++.++||.++.+ +.-.+++++.+| +...++ .++.++|.++.++.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---GKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---CEEEEEEEeccCCcCCccceeCC
Confidence 1 1111 11 124566789999999999999966 333445555555 222232 34566899999999
Q ss_pred cccEEEEeccceeeeeeeccccc
Q psy13629 274 NNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 274 ~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.++.|+.+..+++.|.+...|..
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCC
Confidence 99999999998888876665543
No 46
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.90 E-value=7e-09 Score=69.42 Aligned_cols=41 Identities=34% Similarity=0.671 Sum_probs=39.2
Q ss_pred CeEEEEeCCCC-eEEEEECCCCceEEEEecCCCCceeEEEeC
Q psy13629 187 EKLYWTDSETN-KLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227 (395)
Q Consensus 187 ~~LYwtd~~~~-~I~v~~ldg~~~~~l~~~~~~~P~~iavdp 227 (395)
++|||||...+ +|.+++++|+.+++++.+++.+|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 68999999999 999999999999999999999999999996
No 47
>KOG4659|consensus
Probab=98.89 E-value=5.3e-08 Score=104.30 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=117.9
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCc---ceEEEecCCCeEEEEeCCCCeEEEEE-C
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP---DGLAIDWLTEKLYWTDSETNKLEVSS-L 204 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p---~glAVD~~~~~LYwtd~~~~~I~v~~-l 204 (395)
-.|+++++-+++ .||+.| -+-|.|+..+|. ..+++.-+...| --||||++.|.||++|....+|.+.. +
T Consensus 365 ~aPvala~a~DG-Sl~VGD--fNyIRRI~~dg~----v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl 437 (1899)
T KOG4659|consen 365 FAPVALAYAPDG-SLIVGD--FNYIRRISQDGQ----VSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSL 437 (1899)
T ss_pred eceeeEEEcCCC-cEEEcc--chheeeecCCCc----eEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccC
Confidence 368999998765 588877 468999999995 455555444444 46999999999999999988887764 4
Q ss_pred CCCc----eEEEEe--------------------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 205 DGKK----RKVLYW--------------------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 205 dg~~----~~~l~~--------------------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.++. -+++.. ..+..|+||++|. .|.||++| ..+|..++-+| .-. +++.
T Consensus 438 ~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD---~t~IR~iD~~g--iIs-tlig 510 (1899)
T KOG4659|consen 438 EPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFAD---GTRIRVIDTTG--IIS-TLIG 510 (1899)
T ss_pred CccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEec---ccEEEEeccCc--eEE-Eecc
Confidence 3321 112211 1367899999995 88999999 67899999888 333 2322
Q ss_pred c-------------------CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 261 S-------------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 261 ~-------------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+ .+.||..||+|+..+.||+.| +|.|.+++.++..+..
T Consensus 511 ~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii 567 (1899)
T KOG4659|consen 511 TTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRII 567 (1899)
T ss_pred CCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEE
Confidence 2 367999999999999999999 7899999999988865
No 48
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.88 E-value=1.8e-07 Score=92.86 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=110.7
Q ss_pred cEEecC--CCCCeEEEEEEcCCCEEEEEECC-----------C-CeEEEEEc-cCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 121 PVTIIK--DLEEGAAIDYYYKKSMVCWTDHG-----------T-EMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 121 ~~~~~~--~~~~~~gl~~d~~~~~lywsd~~-----------~-~~I~~~~~-dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.++++. .+.+|.+|++|.. ++||+++.. . ++|.+..- |+.......+++..++..|+||+++.
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~- 81 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV- 81 (367)
T ss_pred EEEEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-
Confidence 344444 4899999999976 558998742 2 37887764 33222234567778899999999986
Q ss_pred CCeEEEEeCCCCeEEEE-ECCCC-----ceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCC-------------
Q psy13629 186 TEKLYWTDSETNKLEVS-SLDGK-----KRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGE------------- 239 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~-~ldg~-----~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~------------- 239 (395)
++ ||+++. ..|.++ +.+|. .+++++..- ...+++++++| .|+||+++-..
T Consensus 82 ~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 82 GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccC
Confidence 45 999974 467777 55542 344554311 24488999998 57999988410
Q ss_pred -----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeee
Q psy13629 240 -----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVM 291 (395)
Q Consensus 240 -----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~ 291 (395)
...|.|++.+| +..+ ++...+..|+||++|. .++||++|........+
T Consensus 158 ~~~~~~g~i~r~~pdg--~~~e-~~a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDG--GKLR-VVAHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRV 210 (367)
T ss_pred cccccCceEEEEecCC--CeEE-EEecCcCCCccceECC-CCCEEEEccCCCceeEE
Confidence 14699999998 4544 4566789999999996 67899998754443333
No 49
>KOG1520|consensus
Probab=98.83 E-value=2.3e-08 Score=96.43 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=114.2
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEecCCCeEEEEeC------
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDWLTEKLYWTDS------ 194 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~~~~~LYwtd~------ 194 (395)
.+.-++|.||+|+..++.||++|..- -++.++..|.. .+.+... .+.-.+++.||. ++.+||||+
T Consensus 111 e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 111 EPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred ccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccccCeeeeecCceeEcC-CCeEEEeccccccch
Confidence 34458999999999999999999654 46777777752 2222222 335688999999 999999993
Q ss_pred -----------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce-EEEEecC
Q psy13629 195 -----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR-KVIVDST 262 (395)
Q Consensus 195 -----------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~-~~lv~~~ 262 (395)
.++++.++|...+..+++. +++.-|+||+++|+..++-+++.+ ..+|.|..+.|..... +++++.-
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~L 263 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGL 263 (376)
T ss_pred hheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcC
Confidence 3567888888888887887 889999999999999999999944 7899999999943322 5555545
Q ss_pred CcCceeEEEeccccEEEEec
Q psy13629 263 IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD 282 (395)
-+.|..|..|..++ ||.-
T Consensus 264 PG~PDNIR~~~~G~--fWVa 281 (376)
T KOG1520|consen 264 PGYPDNIRRDSTGH--FWVA 281 (376)
T ss_pred CCCCcceeECCCCC--EEEE
Confidence 67899999994444 5654
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.73 E-value=5.7e-06 Score=78.01 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=120.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+.+++++. .+..........+.++++++.++.+|.+....+.|..++.++.. ....+ .....+..+++++.++.
T Consensus 12 ~v~~~d~~t-~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 12 TISVIDTAT-LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTL-PSGPDPELFALHPNGKI 86 (300)
T ss_pred EEEEEECCC-CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEec-cCCCCccEEEECCCCCE
Confidence 567777765 33333334445678899999999999998788899999987642 11112 22345788999998888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+|.+....+.|.+.++........+ .....|.+++++|.+..++.+. .....+...+.+. ........ .-..|..
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~-~~~~~~~~~d~~~--~~~~~~~~-~~~~~~~ 161 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTS-ETTNMAHFIDTKT--YEIVDNVL-VDQRPRF 161 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEe-cCCCeEEEEeCCC--CeEEEEEE-cCCCccE
Confidence 9988877789999999875443333 3345689999999887777765 3233455556554 11111111 1235888
Q ss_pred EEEeccccEEEEeccceeeeeeeccccce
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
++++.+++.||++....+.|...++....
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 99998888888876666788888876543
No 51
>KOG1520|consensus
Probab=98.69 E-value=8.5e-07 Score=85.75 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=134.3
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-Cce----EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSK----HNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~----~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
......+--+.++ +++.|+|+....+.|-++....+.. ... ..-......+|-|||.|..++.||++|...+ +
T Consensus 61 fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L 138 (376)
T KOG1520|consen 61 FDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-L 138 (376)
T ss_pred ecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-e
Confidence 3333333334443 4677899987788887777632110 000 1122234589999999999999999997655 7
Q ss_pred EEEECCCCceEEEEecC----CCCceeEEEeCCCCeEEEEeeCC---CCeEEEEecCCCCcceEE----------EEecC
Q psy13629 200 EVSSLDGKKRKVLYWED----IDQPRAIALVPQDSIMFWTDWGE---VPKIERGAMNGDPRHRKV----------IVDST 262 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~----~~~P~~iavdp~~g~LYwtd~~~---~~~I~~~~~dG~~~~~~~----------lv~~~ 262 (395)
.+.++.|+..+.+..+. +.-.+++.|++ +|.+||||.+. ...+.-+-+.|..+.|-. ++-++
T Consensus 139 ~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~ 217 (376)
T KOG1520|consen 139 LKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG 217 (376)
T ss_pred EEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc
Confidence 78888887755554332 45568999999 99999999652 123444444443333322 23346
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEE
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHR 338 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r 338 (395)
+..|||+++..++..+.+++....+|.+.-+.|...- ..++|.+..|+-.+|...-.+++||=....+|
T Consensus 218 L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g-------t~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 218 LYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG-------TSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred ccccccccCCCCCCEEEEEeeccceeeeeEecCCccC-------chhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 8899999999999999999988888877666654332 22777777788888887776666665544333
No 52
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.68 E-value=1.5e-05 Score=75.07 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=123.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++.. .......+....+.++++++.++.++.+......+..++.+.. ...... .....|..+++++.++.
T Consensus 96 ~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 96 LVTVIDIET-RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY---EIVDNV-LVDQRPRFAEFTADGKE 170 (300)
T ss_pred eEEEEECCC-CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC---eEEEEE-EcCCCccEEEECCCCCE
Confidence 577778765 3333333333457889999998888877655556666666543 111111 12346889999998888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEe-c------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYW-E------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~-~------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
||++....+.|.+.++........+. . ....|.+++++|..+++|++. +...+|...+++.. .....+..
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~-~~~~~i~v~d~~~~-~~~~~~~~- 247 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL-GPANRVAVVDAKTY-EVLDYLLV- 247 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-CCCCeEEEEECCCC-cEEEEEEe-
Confidence 88876667899999998654432221 1 123578999999999999886 33567888887641 22222221
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
-..|.++++++.+++||.+....+.|.+.+.++...+.
T Consensus 248 -~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 248 -GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred -CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 23688999999999999998778889999988766544
No 53
>KOG4659|consensus
Probab=98.67 E-value=7.4e-07 Score=95.79 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=124.1
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE-ccCCCC-CceEEEEe-------------
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT-FDGNNV-GSKHNVIT------------- 171 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~-~dg~~~-~~~~~i~~------------- 171 (395)
=||++..+|... .++-.....+-+=||.||..+.||++|...++|+|+. +.+... .+.+++.-
T Consensus 385 yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCG 464 (1899)
T KOG4659|consen 385 YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCG 464 (1899)
T ss_pred heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccC
Confidence 578888887322 1222345667788999999999999999999999975 333221 12333332
Q ss_pred -------CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe------------------cCCCCceeEEEe
Q psy13629 172 -------NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW------------------EDIDQPRAIALV 226 (395)
Q Consensus 172 -------~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~------------------~~~~~P~~iavd 226 (395)
..+..|.|||||. .|+|||+|. -.|.+.|-+|-....+-. -.+.+|..|||+
T Consensus 465 DGalA~dA~L~~PkGIa~dk-~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~ 541 (1899)
T KOG4659|consen 465 DGALAQDAQLIFPKGIAFDK-MGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVD 541 (1899)
T ss_pred cchhcccceeccCCceeEcc-CCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeec
Confidence 1357899999995 899999996 468888887754433221 137899999999
Q ss_pred CCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--------------------CCcCceeEEEeccccEEEEeccce-
Q psy13629 227 PQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--------------------TIFWPNGIAIDFNNRLLYWIDGRL- 285 (395)
Q Consensus 227 p~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--------------------~~~~P~glalD~~~~rLYwaD~~~- 285 (395)
|..+-||+-| .+-|.++..++ ..+ ++... .+..|..|++. ..|-||+++...
T Consensus 542 Pmdnsl~Vld---~nvvlrit~~~--rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 542 PMDNSLLVLD---TNVVLRITVVH--RVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGALYVAESDGR 614 (1899)
T ss_pred CCCCeEEEee---cceEEEEccCc--cEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCceEEEEeccch
Confidence 9999999999 67888888887 222 33322 12346778888 457899998655
Q ss_pred --eeeeeeccccce
Q psy13629 286 --TFIEVMDYDGYV 297 (395)
Q Consensus 286 --~~I~~~~~dG~~ 297 (395)
|+|..+..||..
T Consensus 615 riNrvr~~~tdg~i 628 (1899)
T KOG4659|consen 615 RINRVRKLSTDGTI 628 (1899)
T ss_pred hhhheEEeccCceE
Confidence 455566666643
No 54
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=2.6e-05 Score=72.85 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=109.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.||+|+++++.||...-....|+..+++|. -.+.+...+...++||++- .++.+..++...+++.++.++.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~---vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK---VLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE--
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC---EEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEec
Confidence 45569999999999999999888999999999885 4566767788999999995 3556666777788898888733
Q ss_pred --Cce--EE--EEe---c--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec--CCCCcceEEEEec-------CCcCc
Q psy13629 207 --KKR--KV--LYW---E--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS-------TIFWP 266 (395)
Q Consensus 207 --~~~--~~--l~~---~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~-------~~~~P 266 (395)
... .. -+. . .-.---|||.|+.++.||+..-....+|+.++. .+ ......... ....|
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--FDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--S--EEEE-HHHH-HT--SS--
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--cceeeccccccccccceeccc
Confidence 211 11 111 1 112257999999999999987443446777776 22 222222111 24569
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.++++|+..+.||+....+.+|..++.+|.....
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~ 207 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS 207 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE
Confidence 9999999999999999999999999999986654
No 55
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.56 E-value=4.8e-06 Score=82.62 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=109.8
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE-ccCCCC-C-ceEEEEeCC-------CCCcceEEEecCCCeEE
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT-FDGNNV-G-SKHNVITNG-------LITPDGLAIDWLTEKLY 190 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~-~dg~~~-~-~~~~i~~~~-------~~~p~glAVD~~~~~LY 190 (395)
.+.++..+..+.||++...+ ||+++ ...|.++. .++... . .+++++..- ...++++++++ .++||
T Consensus 64 ~~vfa~~l~~p~Gi~~~~~G--lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LY 138 (367)
T TIGR02604 64 SNVFAEELSMVTGLAVAVGG--VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLY 138 (367)
T ss_pred eEEeecCCCCccceeEecCC--EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEE
Confidence 46778889999999998655 99986 34688774 443211 1 233343321 23488999997 68999
Q ss_pred EEeCCC-------------------CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC--
Q psy13629 191 WTDSET-------------------NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-- 249 (395)
Q Consensus 191 wtd~~~-------------------~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-- 249 (395)
+++... +.|.+++++|...+++. ..+.+|+|+++|+ .|.||++|-+ .....++..-
T Consensus 139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~tdn~-~~~~~~i~~~~~ 215 (367)
T TIGR02604 139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCDND-DPPLCRVTPVAE 215 (367)
T ss_pred EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEccC-CCceeEEccccc
Confidence 988621 57999999998876654 7899999999998 6889999843 2222222210
Q ss_pred ----------CC-----C--cceEE-----------EE-----ecCCcCceeEEEe-------ccccEEEEeccceeeee
Q psy13629 250 ----------GD-----P--RHRKV-----------IV-----DSTIFWPNGIAID-------FNNRLLYWIDGRLTFIE 289 (395)
Q Consensus 250 ----------G~-----~--~~~~~-----------lv-----~~~~~~P~glalD-------~~~~rLYwaD~~~~~I~ 289 (395)
|. . ...+. ++ -.....|.|+++- ...+.++++++..++|.
T Consensus 216 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~ 295 (367)
T TIGR02604 216 GGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIV 295 (367)
T ss_pred ccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEE
Confidence 00 0 00000 00 0011268999986 34578999999999998
Q ss_pred eeccc
Q psy13629 290 VMDYD 294 (395)
Q Consensus 290 ~~~~d 294 (395)
++.++
T Consensus 296 ~~~l~ 300 (367)
T TIGR02604 296 RYSLE 300 (367)
T ss_pred EEEee
Confidence 88876
No 56
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=8.6e-06 Score=78.53 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=105.8
Q ss_pred CCeEEEEEEcCCCEEEEEECC-----------CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHG-----------TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 197 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~-----------~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~ 197 (395)
.+++-...++. +.+|+++.. .+.++|++.+|. ...++...+..|+|||+++.+..||++|...+
T Consensus 111 ~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCC----EEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 46677778876 568888876 246899988663 45666666999999999999999999999999
Q ss_pred eEEEEECC---C----CceEEEEecCCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 198 KLEVSSLD---G----KKRKVLYWEDIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 198 ~I~v~~ld---g----~~~~~l~~~~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
+|.+++++ | +...+.....-..|-|+++|. +|.|| ++-|+ ..+|.+.+.+| .....+ .--..+|...
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~-g~~v~~~~pdG--~l~~~i-~lP~~~~t~~ 260 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG-GGRVVRFNPDG--KLLGEI-KLPVKRPTNP 260 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC-CceEEEECCCC--cEEEEE-ECCCCCCccc
Confidence 99999988 2 211233323457899999995 67777 44444 46899999998 322222 2222467777
Q ss_pred EEe-ccccEEEEecccee
Q psy13629 270 AID-FNNRLLYWIDGRLT 286 (395)
Q Consensus 270 alD-~~~~rLYwaD~~~~ 286 (395)
++- ...++||++-...+
T Consensus 261 ~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 261 AFGGPDLNTLYITSARSG 278 (307)
T ss_pred eEeCCCcCEEEEEecCCC
Confidence 765 34589999976553
No 57
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.51 E-value=6.1e-07 Score=69.99 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=58.3
Q ss_pred ceEEEecCCCeEEEEeC-----------------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC
Q psy13629 178 DGLAIDWLTEKLYWTDS-----------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV 240 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~-----------------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~ 240 (395)
++|+|+..+|.|||||+ .++++.++|+.++..++++ .++..|+||++++++..|.+++.. .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~-~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETG-R 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGG-G
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEecc-C
Confidence 47999988899999993 4689999999999988888 779999999999999999999955 7
Q ss_pred CeEEEEecCC
Q psy13629 241 PKIERGAMNG 250 (395)
Q Consensus 241 ~~I~~~~~dG 250 (395)
.+|.|..+.|
T Consensus 79 ~Ri~rywl~G 88 (89)
T PF03088_consen 79 YRILRYWLKG 88 (89)
T ss_dssp TEEEEEESSS
T ss_pred ceEEEEEEeC
Confidence 8999999987
No 58
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.47 E-value=3.5e-06 Score=82.40 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=104.2
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe------CCCCCcceEEEec---CCCeEEEEeCCC--
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT------NGLITPDGLAIDW---LTEKLYWTDSET-- 196 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~------~~~~~p~glAVD~---~~~~LYwtd~~~-- 196 (395)
+.+|.+|+|.++ ++||+++. .++|+++..+|.. ...+.. ......-|||+|+ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcC---cceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 367999999998 67899986 9999999977752 122211 2345678999998 368888876532
Q ss_pred ------CeEEEEECCCC-----ceEEEEe------cCCCCceeEEEeCCCCeEEEEeeC------------CCCeEEEEe
Q psy13629 197 ------NKLEVSSLDGK-----KRKVLYW------EDIDQPRAIALVPQDSIMFWTDWG------------EVPKIERGA 247 (395)
Q Consensus 197 ------~~I~v~~ldg~-----~~~~l~~------~~~~~P~~iavdp~~g~LYwtd~~------------~~~~I~~~~ 247 (395)
.+|.++.++.. ..++++. ...+.-.+|+++| .|+||++--. ...+|.|++
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEec
Confidence 57888887655 2334432 1356778899999 5599999611 136899999
Q ss_pred cCCCC----------cceEEEEecCCcCceeEEEeccccEEEEeccceeee
Q psy13629 248 MNGDP----------RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288 (395)
Q Consensus 248 ~dG~~----------~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I 288 (395)
.||+. .....++...+..|.+|++|...++||.+|...+..
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~ 205 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGW 205 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSS
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCC
Confidence 99931 012345677889999999998879999999655433
No 59
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.46 E-value=2.8e-05 Score=72.61 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=95.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC--CCCce--EEEEeC----CCCCcceE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN--NVGSK--HNVITN----GLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~--~~~~~--~~i~~~----~~~~p~gl 180 (395)
.|..++++|+--......+.+.+.||+|- .++.+..++...++++.+..+.. .+... +.+... .-..-+||
T Consensus 45 ~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl 123 (248)
T PF06977_consen 45 EIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL 123 (248)
T ss_dssp EEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred EEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence 45556665522233445567889999996 45566677767889998888432 11111 112111 22347999
Q ss_pred EEecCCCeEEEEeCCCC-eEEEEEC--CCCceEEEEe-------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 181 AIDWLTEKLYWTDSETN-KLEVSSL--DGKKRKVLYW-------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~-~I~v~~l--dg~~~~~l~~-------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
|.|+.++.||.+..... .|+..+. .+....+... .....|.+|++||..+.||+-. .++.+|...+.+|
T Consensus 124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es~~l~~~d~~G 202 (248)
T PF06977_consen 124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DESRLLLELDRQG 202 (248)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TTTTEEEEE-TT-
T ss_pred EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEE-CCCCeEEEECCCC
Confidence 99999999999864433 4666665 2222222221 1367899999999999999987 6789999999999
Q ss_pred CCcceEEEEe------cCCcCceeEEEeccccEEEEecc
Q psy13629 251 DPRHRKVIVD------STIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 251 ~~~~~~~lv~------~~~~~P~glalD~~~~rLYwaD~ 283 (395)
.......+.. ..+.+|-|||+| .+++||++..
T Consensus 203 ~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvsE 240 (248)
T PF06977_consen 203 RVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVSE 240 (248)
T ss_dssp -EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEET
T ss_pred CEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEcC
Confidence 3222223332 236789999999 5679999874
No 60
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.42 E-value=2.4e-05 Score=79.00 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=112.3
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc---eEEEEe-CCCCCcceEEEecC------CCe
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS---KHNVIT-NGLITPDGLAIDWL------TEK 188 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~---~~~i~~-~~~~~p~glAVD~~------~~~ 188 (395)
...+.++..+..|.+|+|.+++ .+|++....++|.++..++..... ...+.. .+...+-|||+++. ++.
T Consensus 20 f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 3456678889999999999864 788998657999998765431100 011221 24567899999954 568
Q ss_pred EEEEeC---------CCCeEEEEECCCC-----ceEEEEec----CCCCceeEEEeCCCCeEEEEeeCC-----------
Q psy13629 189 LYWTDS---------ETNKLEVSSLDGK-----KRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGE----------- 239 (395)
Q Consensus 189 LYwtd~---------~~~~I~v~~ldg~-----~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~----------- 239 (395)
||++-. ...+|.++.++.. ..++++.. ..+.-..|+++|+ |+||++- |+
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~-GD~g~~~~~n~~~ 176 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTI-GEQGRNQGANFFL 176 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEE-CCCCCCCcccccC
Confidence 998841 2568999988632 23445532 1355678999984 6899975 31
Q ss_pred ---------------------CCeEEEEecCCCC--------cceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 240 ---------------------VPKIERGAMNGDP--------RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 240 ---------------------~~~I~~~~~dG~~--------~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
..+|.|++.||+. ..+..+....+++|.||++|+ +++||.+|...
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp 250 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGP 250 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCC
Confidence 1279999999931 013457777889999999997 78999998654
No 61
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.42 E-value=7.9e-07 Score=59.22 Aligned_cols=41 Identities=44% Similarity=0.967 Sum_probs=37.1
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.++..++..|+|||+||.+++|||+|...+.|.+++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 35566788999999999999999999999999999999975
No 62
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.7e-05 Score=71.28 Aligned_cols=186 Identities=12% Similarity=0.165 Sum_probs=133.0
Q ss_pred EEEEEeeCCC---CCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeC---CCCCcce
Q psy13629 108 LDIRIANLSR---PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITN---GLITPDG 179 (395)
Q Consensus 108 ~~I~~~~l~~---~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~---~~~~p~g 179 (395)
..|.+++++. +-.....+....+|.=|+++++++.||..... .+.|-.+..|..+ ..-+.+.. ....|.-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--CeEEEeeccccCCCCCeE
Confidence 4566777663 23344566778899999999999999999866 6788888888642 12333333 2345699
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECC--CCceEE--EEecC---------CCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKV--LYWED---------IDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ld--g~~~~~--l~~~~---------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
+++|..++.||.++...+.|.|+.+. |.-..+ ++... -.++...-++|++++|+.+|.| ..+|...
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEE
Confidence 99999999999999999999998874 433322 22111 1236778899999999999988 5566555
Q ss_pred ec-CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 247 AM-NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 247 ~~-dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
++ ||.+.......-..-..|.-|++.+.++..|....-+++|.+..+++.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 55 453332222222334579999999999999999999999999998885
No 63
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.37 E-value=6e-07 Score=59.81 Aligned_cols=41 Identities=37% Similarity=0.646 Sum_probs=37.0
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+++...+..|+||++|+.+++|||+|...+.|++++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 35566788999999999999999999999999999999975
No 64
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.27 E-value=0.0002 Score=71.06 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=117.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCe-EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~-~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+.++|.+. .+..-..+....+ .++.+.++++.+|.++ .++.|..+++.... ....+ .....|.|+++.+.++
T Consensus 17 ~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~---~v~~i-~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 17 SVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGK---VVATI-KVGGNPRGIAVSPDGK 90 (369)
T ss_dssp EEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSS---EEEEE-E-SSEEEEEEE--TTT
T ss_pred EEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCccc---EEEEE-ecCCCcceEEEcCCCC
Confidence 678888766 4444444444444 5678999999999998 57899999998752 22222 2345799999999999
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.+|.++...+.+.+.|.........+... -..+.+|.-+|.+.. |+....+..+|..++.... ....+-.-
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-fVv~lkd~~~I~vVdy~d~-~~~~~~~i 168 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-FVVNLKDTGEIWVVDYSDP-KNLKVTTI 168 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-EEEEETTTTEEEEEETTTS-SCEEEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-EEEEEccCCeEEEEEeccc-cccceeee
Confidence 99999999999999998765544333221 123456766665554 4444456789999987652 22221111
Q ss_pred cCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
.--..|++..+|+++++++.+....+.|..++.......
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 123479999999999999998888899999997665444
No 65
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00024 Score=69.72 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=78.3
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-----c----CCCCcee---EEEeCCCCeEEEEeeC--------CCCe
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-----E----DIDQPRA---IALVPQDSIMFWTDWG--------EVPK 242 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-----~----~~~~P~~---iavdp~~g~LYwtd~~--------~~~~ 242 (395)
.+.+++.+|...+ +.|.++++.+........ . ..-.|-| +++++.+++||+..-+ ....
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 3435677777766 999999987754433221 1 1224555 9999999999995312 1267
Q ss_pred EEEEecCCCCcceEEEEecCCcCceeEEEecccc-EEEEeccceeeeeeeccccceeee
Q psy13629 243 IERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR-LLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 243 I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~-rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
|..++.......+++.+. ..|.+|+++.+++ +||.++...+.|+.+|........
T Consensus 281 V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 999888762222233333 3699999999999 999999999999999976554443
No 66
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.23 E-value=0.00051 Score=67.36 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=125.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeC------
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITN------ 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~------ 172 (395)
..|.++|.+. .++.-.++.-..|.++ ++++++.||.+.. .++.|..++..... ....+...
T Consensus 27 ~~v~ViD~~~-~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEA-GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCC-CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence 5677888877 5665666666788887 9999999999998 78899999988642 22223321
Q ss_pred CCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEEE--------------------------------------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLY-------------------------------------- 213 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~-------------------------------------- 213 (395)
....|..+++.+.++.||+++.. .+.+.+.|+.......-+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 13456699999999999999965 677777776543221100
Q ss_pred -ecC---------CCCceeEEEeC-CCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe---cCC----cCcee---EEEe
Q psy13629 214 -WED---------IDQPRAIALVP-QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD---STI----FWPNG---IAID 272 (395)
Q Consensus 214 -~~~---------~~~P~~iavdp-~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~---~~~----~~P~g---lalD 272 (395)
... +.+| .+.+ .++++|+|. ...|+.+++.+........+. ... -.|.| ++++
T Consensus 183 ~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred eeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 000 1334 3344 444555554 378999998763222222111 111 13555 9999
Q ss_pred ccccEEEEe-ccce--------eeeeeeccccceeee-eeece-e-eeeeeecc
Q psy13629 273 FNNRLLYWI-DGRL--------TFIEVMDYDGYVRLV-TSLGH-I-NLELYCNV 314 (395)
Q Consensus 273 ~~~~rLYwa-D~~~--------~~I~~~~~dG~~~~~-t~~g~-~-~i~Lf~d~ 314 (395)
..+++||++ .... +.|+.+|.....+.. ...+. + .+++-+|.
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg 310 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA 310 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence 999999995 3333 689999987766655 23333 3 67766553
No 67
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.20 E-value=0.0003 Score=67.36 Aligned_cols=161 Identities=20% Similarity=0.123 Sum_probs=101.5
Q ss_pred CeEEEEEEcCCCEEEEEECCC------------CeEEEEEccCCCCCceEEEEeC-----CCCCcceEEEecCC-----C
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGT------------EMISCCTFDGNNVGSKHNVITN-----GLITPDGLAIDWLT-----E 187 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~------------~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~glAVD~~~-----~ 187 (395)
++.++..|. .++|++.|.+. -+|..+++....+ ..++... .-...++|+||... +
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~l--i~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQL--IRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCE--EEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcE--EEEEECChHHcccccccceEEEEccCCCCcce
Confidence 356677774 56777777642 2677777776532 1222222 22456789999855 4
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEec-------------------CCCCceeEEEeC---CCCeEEEEeeCCCCeEEE
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWE-------------------DIDQPRAIALVP---QDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~-------------------~~~~P~~iavdp---~~g~LYwtd~~~~~~I~~ 245 (395)
.+|.+|.....|.|+|+.......+... ......|++++| .++.|||.-.. ..++++
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~ 157 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYR 157 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEE
T ss_pred EEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEE
Confidence 8999999999999999987543333311 012357788877 55689999854 567888
Q ss_pred Eec----CCCCcceE------EEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 246 GAM----NGDPRHRK------VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 246 ~~~----dG~~~~~~------~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.. +....... ..+........|+++|. ++.||+++...+.|.+.+.++
T Consensus 158 v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 158 VPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred EEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 776 22111111 23333234678999994 899999999999999999998
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00053 Score=69.51 Aligned_cols=185 Identities=11% Similarity=0.081 Sum_probs=122.1
Q ss_pred ceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 105 AYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 105 ~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
.+..+|.+++.++ .+...+..........+|++++++|.++.. ....|+..++++. ..+.+. .........++
T Consensus 176 ~~~~~l~~~d~dg-~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G---~~~~l~-~~~~~~~~~~~ 250 (429)
T PRK03629 176 QFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVA-SFPRHNGAPAF 250 (429)
T ss_pred CcceeEEEEcCCC-CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---CeEEcc-CCCCCcCCeEE
Confidence 4456888899988 444445555566788999999998887643 3457888888865 223332 21222345788
Q ss_pred ecCCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 183 DWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 183 D~~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
.+.++.|+++.. +...|++.++++...+.+. .........+.+|+++.|+ .++.+...+|++.+++| ...+.+.
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt 327 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRIT 327 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEee
Confidence 888889998743 3347999999987776665 3334566788999988774 45544567899999988 3444343
Q ss_pred ecCCcCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
.. ........+.++++.|+++... ...|..+++++...
T Consensus 328 ~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 328 WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred cC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 22 2233456778788888776533 24567777765543
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.19 E-value=0.00036 Score=71.13 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=118.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+++.++ .+...+...........|++++++|+|+... ...|+..++++. ....+. .........+..+.
T Consensus 198 ~~l~i~d~dG-~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~~lt-~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDG-YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---VREKVT-SFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCC-CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---CeEEec-CCCCCcCCeeECCC
Confidence 3566677777 4444455555556678999999999887543 346999998875 222232 21122345788888
Q ss_pred CCeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++... ...|++.++++...+.+. .........+.+|++++|+++.. +....|++.++++ ...+.+...
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt~~- 348 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALTRIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLTFE- 348 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEEecC-
Confidence 8889886433 346999999987766554 33334566789999888877643 3467899999986 333333222
Q ss_pred CcCceeEEEeccccEEEEeccc--eeeeeeeccccceee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRL 299 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~ 299 (395)
..+..+.+++++++.||++... ...|..+++++....
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 1233456788888899887543 346777887765543
No 70
>KOG4499|consensus
Probab=98.19 E-value=0.0001 Score=66.90 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=65.5
Q ss_pred cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe--cC-CCCcceEEEEec------CCcCceeEEEeccccEEEEeccce
Q psy13629 215 EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA--MN-GDPRHRKVIVDS------TIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 215 ~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~--~d-G~~~~~~~lv~~------~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
..+.-|+||+-|.+.+.+|++| .-+..|...+ .. |..++++.++.- +-..|.||+|| .++.||++..+.
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iD-sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng 232 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYID-SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNG 232 (310)
T ss_pred hhccCCccccccccCcEEEEEc-cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecC
Confidence 5677899999999999999999 4466674444 43 445788887763 24579999999 689999999999
Q ss_pred eeeeeeccccceeee
Q psy13629 286 TFIEVMDYDGYVRLV 300 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~ 300 (395)
.+|..+++....+..
T Consensus 233 ~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILL 247 (310)
T ss_pred cEEEEECCCCCcEEE
Confidence 999999976555543
No 71
>KOG4499|consensus
Probab=98.14 E-value=0.00012 Score=66.41 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=85.2
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE--ccCCCCCceEEEEeC------CCCCcceEEEecCCCeEE
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT--FDGNNVGSKHNVITN------GLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~--~dg~~~~~~~~i~~~------~~~~p~glAVD~~~~~LY 190 (395)
.+...+.....-++||+||.+.++.|+.|..+-.|-.++ ..+..++++..++.- ....|.|++||- .|+||
T Consensus 148 h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~ 226 (310)
T KOG4499|consen 148 HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLY 226 (310)
T ss_pred CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEE
Confidence 566777777888999999999999999999888996555 555555566655542 234699999996 99999
Q ss_pred EEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEe
Q psy13629 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTD 236 (395)
Q Consensus 191 wtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd 236 (395)
++....++|++.|+....+..-+.-...+...+++-- .-..||+|.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999999876554422222344555666542 234678776
No 72
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.00059 Score=69.25 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=119.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|.++|.++ .+...+........+.+|++++++|+++... ...|++.++++. ....+. .........++.+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~~l~-~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---QRELVA-SFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---CEEEec-cCCCCccCceECCC
Confidence 4677788877 4444455555567788999999999988643 346999999875 233332 21122346788888
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
+++|+++-. +...|++.++++...+.+. .........+++|++++|+++ +......|+..++++ ...+.+....
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~g 335 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQG 335 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeecCC
Confidence 888987642 3457999999987766554 333334567899988877765 433457899999987 3333333221
Q ss_pred CcCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......++.++++.|+++... ...|...++++...
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 234467888889999887533 34677888765543
No 73
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.11 E-value=2e-05 Score=61.51 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=55.0
Q ss_pred eeEEEeCCCCeEEEEeeCC----------------CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 221 RAIALVPQDSIMFWTDWGE----------------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 221 ~~iavdp~~g~LYwtd~~~----------------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
++++|++..|.+||||.+. ..++.+.++.. +...++-+++..|||++++.++..|++++..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 5789999889999999531 26899999986 4555566678999999999999999999999
Q ss_pred eeeeeeecccc
Q psy13629 285 LTFIEVMDYDG 295 (395)
Q Consensus 285 ~~~I~~~~~dG 295 (395)
..+|.+.-+.|
T Consensus 78 ~~Ri~rywl~G 88 (89)
T PF03088_consen 78 RYRILRYWLKG 88 (89)
T ss_dssp GTEEEEEESSS
T ss_pred CceEEEEEEeC
Confidence 99998877766
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00069 Score=69.12 Aligned_cols=182 Identities=9% Similarity=0.059 Sum_probs=116.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .+...+........+.+|+++++.|+++...+ ..|+.+++++. ....+.. ........+..+.+
T Consensus 243 ~L~~~dl~t-g~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg---~~~~lt~-~~~~~~~p~wSpDG 317 (448)
T PRK04792 243 EIFVQDIYT-QVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK---ALTRITR-HRAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCC-CCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC---CeEECcc-CCCCccceEECCCC
Confidence 577788876 33333433333345678999999998864333 36999998875 2333322 22334556777778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|+++++++...+.+.. ......+.+++|+.++||++... ...+|++.++++ ...+.+.....
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~lt~~~~ 394 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQVLTSTRL 394 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEEccCCCC
Confidence 88888753 34679999998766555542 22334456899999999888643 345789999987 44444433321
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
-...++.++++.|+++... ...++.++.+|...+.
T Consensus 395 --d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~ 431 (448)
T PRK04792 395 --DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKAR 431 (448)
T ss_pred --CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 1123577778888886533 3457788888876654
No 75
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.0013 Score=66.75 Aligned_cols=184 Identities=10% Similarity=-0.003 Sum_probs=121.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+++.++ .+...+...........|++++++|+++... ...|+..++++. ....+. .......+.++.+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~~l~-~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---QRELVG-NFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---cEEEee-cCCCcccCcEECCC
Confidence 4677788877 5555555666678889999999988877533 468999999865 333332 22223346678887
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++-. +...|++.++++...+.+. ...........+|+.++|+++ +......|++.+++| ...+.+....
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~~ 333 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFGG 333 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecCC
Confidence 888877643 3457999999988776655 333345567889988877655 434467899999998 4444443321
Q ss_pred CcCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
..-....+.++++.|+++.. ....|..++++|...+.
T Consensus 334 -~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 334 -GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred -CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 12234567778888887653 33578888887765443
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.0018 Score=65.53 Aligned_cols=182 Identities=10% Similarity=0.062 Sum_probs=116.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ .+...+...........|++++++|+++... ...|++.++++. ..+.+.. ........++.+.+
T Consensus 180 ~l~~~d~~g-~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~~l~~-~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDG-ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---RREQITN-FEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCC-CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---CEEEccC-CCCCcCCeEECCCC
Confidence 466777777 4445555555566788999999999776533 347999999865 2333322 11223357777878
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++-. +...|++.++++...+.+. ...........+|+.+.||++. ......|++.++++ ...+.+....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~~~- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTFVG- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecCC-
Confidence 88887653 3457999999988766554 3333345567899888877654 33467899999877 3333333221
Q ss_pred cCceeEEEeccccEEEEeccce--eeeeeeccccceee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRL--TFIEVMDYDGYVRL 299 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~--~~I~~~~~dG~~~~ 299 (395)
.......++++++.|+++.... ..|..+++++...+
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 1223456778888998886432 35777787765443
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.001 Score=67.51 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=118.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .....+....+...+.+|++++++|+++-.. ...|+.+++++. ....+. .........+..+.+
T Consensus 227 ~i~~~dl~~-g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~Lt-~~~~~~~~~~~spDG 301 (435)
T PRK05137 227 RVYLLDLET-GQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG---TTTRLT-DSPAIDTSPSYSPDG 301 (435)
T ss_pred EEEEEECCC-CcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC---ceEEcc-CCCCccCceeEcCCC
Confidence 678888876 3444444444455678999999998776433 346999998875 223332 222234456777777
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|++.+++|...+.+... ...-...+++|++++|+++... +..+|...+++| ...+.+....
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~~- 377 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSGF- 377 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCCC-
Confidence 88877653 345899999998877666532 2233457799999999887633 346899999887 4444443322
Q ss_pred cCceeEEEeccccEEEEeccce-----eeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~~~~ 300 (395)
.....++.++++.|+++-... ..++.++++|...+.
T Consensus 378 -~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 378 -LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred -CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE
Confidence 345667888888888764322 468888888865543
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.0019 Score=64.69 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=117.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.+.++ .....+..........+|++++++|+|+.... ..|+.+++++. .... +.........+++.+.+
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---QREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---CEEE-eecCCCCccceEECCCC
Confidence 466677766 44444555444577788999999999987543 57888888764 2222 22222234457788877
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.||++... ...|+..++++...+.+.. ........+++|+.++|+++. .+....|++.++++ ...+.+.. ..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~-~~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTF-RG 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeec-CC
Confidence 889887543 4579999998876655542 222233557888888887654 33456899999987 34333332 22
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......+++++++.|+++... ..+|..+++++...
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 345567888888899988653 24678888776433
No 79
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.0015 Score=66.20 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=115.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
+|.+++.++ .....+..........+|++++++|+++... ...|+..++++. ....+ ..........++.+.+
T Consensus 177 ~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 177 QLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEe-ecCCCCccceEECCCC
Confidence 567777776 4444444445566788999999999877543 346999999865 22323 2222234467888888
Q ss_pred CeEEEEe--CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTD--SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd--~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++- .+...|+++++++...+.+. ...........+|+.++|+++ +.+....|+..++++ ...+.+....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~g- 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFTG- 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecCC-
Confidence 8898763 33457999999887765554 222334557799988877654 434567899999887 3333333221
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......++.++++.|+++... ...|...++++...
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 122345678788888877533 24677777765443
No 80
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0013 Score=66.74 Aligned_cols=182 Identities=9% Similarity=0.051 Sum_probs=116.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++++ .....+........+.+|++++++|+++-.. ...|+.+++++. ....+. .........+..+.+
T Consensus 229 ~l~~~dl~~-g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g---~~~~lt-~~~~~~~~~~~spDG 303 (433)
T PRK04922 229 AIYVQDLAT-GQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR---QLTRLT-NHFGIDTEPTWAPDG 303 (433)
T ss_pred EEEEEECCC-CCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC---CeEECc-cCCCCccceEECCCC
Confidence 577888876 3433443333344578999999999876433 347999999875 223332 222233456778878
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++... ...|++.++++...+.+.. ........+++|+.++|+++... ....|+..++++ ...+.+....
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~~Lt~~~- 379 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVRTLTPGS- 379 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeEECCCCC-
Confidence 888877532 4579999998766555542 23345578999999999887632 234799999877 3444443321
Q ss_pred cCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.....++..+++.|+++.. ....+..++.+|...+.
T Consensus 380 -~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 380 -LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 2234567777888877753 34568888888876544
No 81
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0026 Score=64.25 Aligned_cols=180 Identities=6% Similarity=-0.044 Sum_probs=119.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
+|.++++.+ .+...+....+.....+|++++++|.++-.. +..|+.+++++. ..+.+..... .-..-...+.+
T Consensus 214 ~Iyv~dl~t-g~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~LT~~~~-~d~~p~~SPDG 288 (419)
T PRK04043 214 TLYKYNLYT-GKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQITNYPG-IDVNGNFVEDD 288 (419)
T ss_pred EEEEEECCC-CcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEEcccCCC-ccCccEECCCC
Confidence 678888876 4445555544445567899999988887543 457999998876 3333333221 11233577778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC-------CCeEEEEecCCCCcceEE
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-------VPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~-------~~~I~~~~~dG~~~~~~~ 257 (395)
+.|||+.. +...|++.+++|...+.+....... ..++|+.++|.++.... ...|+..+++| ...+.
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~~~~ 363 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--DYIRR 363 (419)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--CCeEE
Confidence 89998863 3458999999988776555333222 38999999887776332 15899999988 45555
Q ss_pred EEecCCcCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
+.... .-....+.++++.|+++.. ....+..++++|.....
T Consensus 364 LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 364 LTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred CCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 55432 1223567888888888753 34568899999976655
No 82
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0029 Score=63.97 Aligned_cols=181 Identities=10% Similarity=-0.010 Sum_probs=115.5
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCE-EEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM-VCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~-lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.+|.++|.+| .+...+... +......|++++++ +|++... ...|++.++++. ..+.+.. ........++.+
T Consensus 169 ~~l~~~d~dg-~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~-~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTL-TYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIAS-SQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCC-CceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEec-CCCcEEeeEECC
Confidence 4778888888 444444444 35667889999985 7775544 467999999875 3344432 111222345666
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEec
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
.+++|.++.. ++..|+++++++...+.+..... .-..-..+|+.+.||++.. ++.+.|++.+++| ...+.+...
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~ 319 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFH 319 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccC
Confidence 6778877753 35689999999887666653322 1223468998888877753 3567999999998 444334333
Q ss_pred CCcCceeEEEeccccEEEEeccce--------eeeeeeccccceeee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRL--------TFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~--------~~I~~~~~dG~~~~~ 300 (395)
... + ..+++++++|.++.... ..|..+++++...+.
T Consensus 320 g~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 320 GKN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 221 2 37788888887775332 467888877665443
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.96 E-value=0.0023 Score=64.10 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=116.1
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|.++++.+ .....+........+.+|+++++.|+++... ...|+..++++. ....+... .......+..+.
T Consensus 214 ~~i~v~d~~~-g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~~-~~~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLAT-GQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTNG-PGIDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCC-CCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCCC-CCCCCCEEECCC
Confidence 3678888876 3333444444455678999999999887543 346888888865 22333222 112234466666
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++.. ....|++.++++.....+. .........+++|..++|+++... ...+|..+++++ ...+.+....
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~ 365 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTDTG 365 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccCCC
Confidence 778887753 3457999999887665554 344556778899999999998744 245789999887 4444443321
Q ss_pred CcCceeEEEeccccEEEEeccce--eeeeeeccccceeee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRL--TFIEVMDYDGYVRLV 300 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~--~~I~~~~~dG~~~~~ 300 (395)
.....++.++++.|+++.... ..++..+.+|.....
T Consensus 366 --~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 366 --LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred --CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 223346777788888876433 446666667655443
No 84
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.0038 Score=63.28 Aligned_cols=182 Identities=10% Similarity=0.079 Sum_probs=117.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .+...+..........+|++++++|+++... ...|+.+++++. ....+. .........+..+.+
T Consensus 224 ~i~i~dl~~-G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~~lt-~~~~~~~~~~wSPDG 298 (429)
T PRK03629 224 ALVIQTLAN-GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVT-DGRSNNTEPTWFPDS 298 (429)
T ss_pred EEEEEECCC-CCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEcc-CCCCCcCceEECCCC
Confidence 567777766 4444444333445568999999999987443 346999999875 223332 222345667788878
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +..+|++.++++...+.+. .........+++|+.++|+++... ....|+..++++ ...+.+....
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~--g~~~~Lt~~~- 374 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVLTDTF- 374 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--CCeEEeCCCC-
Confidence 88866643 2458999999987666554 333445678899999888776532 346788899887 4444444321
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++... ...+..++++|...+.
T Consensus 375 -~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~ 412 (429)
T PRK03629 375 -LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 412 (429)
T ss_pred -CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence 11234577788888887532 3457888888877655
No 85
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.004 Score=63.08 Aligned_cols=175 Identities=11% Similarity=0.133 Sum_probs=113.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+.+.++ .+...+...........|++++++|.++... ...|+..++++. ..+.+ ......-..+++.+.
T Consensus 184 ~~i~i~d~dg-~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l-~~~~g~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDG-FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVV-ASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEEECCCC-CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEE-ecCCCccCceeECCC
Confidence 4677778887 3444444445567889999999999887543 347999998764 22222 221122335788888
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++-. +...|++.++++...+.+. .........+.+|+..+|+++. .....+|+..+.+| ...+.+ ...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEe-cCC
Confidence 888988743 2346888899887766655 3334566789999988777653 33567899998887 334333 221
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
. ....+.++++.|+.+.. +.+...++.+.
T Consensus 335 -~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 335 -G--YSAQISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred -C--CCccCCCCCCEEEEEcC--CCEEEEECCCC
Confidence 1 23567777888887754 45656676543
No 86
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0047 Score=62.43 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=115.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++++ .....+........+.+|++++++|+++-.. ...|+++++++. ....+. .........+..+.+
T Consensus 224 ~l~~~~l~~-g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt-~~~~~~~~~~~spDg 298 (430)
T PRK00178 224 RIFVQNLDT-GRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR---QLSRVT-NHPAIDTEPFWGKDG 298 (430)
T ss_pred EEEEEECCC-CCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEcc-cCCCCcCCeEECCCC
Confidence 577778876 3333333333344568899999999876433 347999999875 223232 222233455677778
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.||++... ...|++.++++...+.+... .......+++|++++|+++... ....|...++++ ...+.+....
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~~- 374 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDTS- 374 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCCC-
Confidence 888877532 45799999987766555422 2333456789999999988633 235689999987 4455554332
Q ss_pred cCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++.. +...+..++.+|...+.
T Consensus 375 -~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~ 412 (430)
T PRK00178 375 -LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLP 412 (430)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 2223467778888888753 33567888888876543
No 87
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.82 E-value=0.0021 Score=61.60 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=97.0
Q ss_pred CCCCeEEEEEEcCC-----CEEEEEECCCCeEEEEEccCCCCCceEEEEe--------------CC-----CCCcceEEE
Q psy13629 127 DLEEGAAIDYYYKK-----SMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--------------NG-----LITPDGLAI 182 (395)
Q Consensus 127 ~~~~~~gl~~d~~~-----~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--------------~~-----~~~p~glAV 182 (395)
.......+.+|... ..+|.+|.....|.++++.... ...+.. .+ .....|+|.
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial 135 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIAL 135 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCCcccccc
Confidence 34456777788744 5899999888888888887542 111111 11 123567888
Q ss_pred ec---CCCeEEEEeCCCCeEEEEECC----CC---------ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 183 DW---LTEKLYWTDSETNKLEVSSLD----GK---------KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 183 D~---~~~~LYwtd~~~~~I~v~~ld----g~---------~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
.+ .++.|||.--...++++...+ .. ..+.+- ....+.-|+++|+ +|.||+++.. ...|.+.
T Consensus 136 ~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w 212 (287)
T PF03022_consen 136 SPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCW 212 (287)
T ss_dssp -TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEET-TTEEEEEECC-CTEEEEE
T ss_pred CCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECC-CCcEEEecCC-CCeEEEE
Confidence 66 445899999777778877632 11 112222 2235678999998 9999999965 7899999
Q ss_pred ecCCCCc--ceEEEEec-C-CcCceeEEEec-cccEEEEeccceeee
Q psy13629 247 AMNGDPR--HRKVIVDS-T-IFWPNGIAIDF-NNRLLYWIDGRLTFI 288 (395)
Q Consensus 247 ~~dG~~~--~~~~lv~~-~-~~~P~glalD~-~~~rLYwaD~~~~~I 288 (395)
+.++... +.++++.. . +.||++|+++. .++.||+...+.++.
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 9997422 34455553 4 88999999994 268999998666654
No 88
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.005 Score=62.39 Aligned_cols=182 Identities=9% Similarity=0.086 Sum_probs=114.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .....+........+.+|++++++|+++-.. ...|+.+++++. ..+.+.. ........+..+.+
T Consensus 221 ~I~~~dl~~-g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpDG 295 (427)
T PRK02889 221 VVYVHDLAT-GRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---GLRRLTQ-SSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEEECCC-CCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC---CcEECCC-CCCCCcCeEEcCCC
Confidence 478888876 3334443333455678999999999876333 346888888765 2233322 22223456677778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|++.++++...+.+... .......+++|++++|+++... ....|+..++++ ...+.+....
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~lt~~~- 371 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTALTDTT- 371 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEEccCCC-
Confidence 88887642 355788888887665544422 2233457899999998877532 335799999887 4444444332
Q ss_pred cCceeEEEeccccEEEEec--cceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~~~~~ 300 (395)
......+.++++.|+++- .+...+..++.+|.....
T Consensus 372 -~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~ 409 (427)
T PRK02889 372 -RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQR 409 (427)
T ss_pred -CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence 234557787888887774 233457788888865544
No 89
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.009 Score=60.59 Aligned_cols=188 Identities=8% Similarity=0.037 Sum_probs=115.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEE--EccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCC--TFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~--~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
+|.++++++ +....+....+...+.+|++++++|.++-.. ...|+.. ++++........+...........++.+
T Consensus 212 ~I~~~~l~~-g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 212 KIFLGSLEN-PAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred eEEEEECCC-CCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 788888887 4444555444555678999999999887532 2346554 3332111122334433233344568888
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCc-eEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEe
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKK-RKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~-~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.++.|+|+.. +...|++.++++.. ....+..........+.+|++++|+++... ....|+..++++ ...+.+..
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~--g~~~~Lt~ 368 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT--GRDYQLTT 368 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC--CCeEEccC
Confidence 8888887753 34478888886432 222232333345677899999988877532 346899999988 44444543
Q ss_pred cCCcCceeEEEeccccEEEEec--cceeeeeeeccccceeee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~~~~~ 300 (395)
. .......+..++++.|+++- .+...|+.++++|...+.
T Consensus 369 ~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 369 S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred C-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 3 22345567777788888763 234668888887765443
No 90
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.79 E-value=0.0004 Score=67.99 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=98.9
Q ss_pred CCCeEEEEEEcCCCEEEEEECC-------------CCeEEEEEccCCCC---------CceEEEEeCCCCCcceEEEecC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHG-------------TEMISCCTFDGNNV---------GSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~-------------~~~I~~~~~dg~~~---------~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.....+|+|++++ +||++-.. .++|.|++.+|+-. .....+...++.+|.++++|+.
T Consensus 113 ~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~ 191 (331)
T PF07995_consen 113 NHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN 191 (331)
T ss_dssp SS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT
T ss_pred CCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECC
Confidence 4556789999876 99999432 26899999998510 0123466778999999999998
Q ss_pred CCeEEEEeCCC---CeEEEEECCCC-------------------------ceEEEE-ecCCCCceeEEEeCC------CC
Q psy13629 186 TEKLYWTDSET---NKLEVSSLDGK-------------------------KRKVLY-WEDIDQPRAIALVPQ------DS 230 (395)
Q Consensus 186 ~~~LYwtd~~~---~~I~v~~ldg~-------------------------~~~~l~-~~~~~~P~~iavdp~------~g 230 (395)
++.||.+|.+. ..|.+....+. ....++ -..-..|.|+++... .|
T Consensus 192 tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g 271 (331)
T PF07995_consen 192 TGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRG 271 (331)
T ss_dssp TTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTT
T ss_pred CCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccC
Confidence 89999999443 34444432110 001111 123467899998844 66
Q ss_pred eEEEEeeCCCCeEEEEecCCC--CcceEEEEecCCcCceeEEEeccccEEEEeccceeeeee
Q psy13629 231 IMFWTDWGEVPKIERGAMNGD--PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 231 ~LYwtd~~~~~~I~~~~~dG~--~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
.+|+++++ ..+|.++.++.. ....+.++...-..|.+|++++ ++.||++|...++|++
T Consensus 272 ~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 272 DLFVADYG-GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKIYR 331 (331)
T ss_dssp EEEEEETT-TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTEEE
T ss_pred cEEEecCC-CCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeEeC
Confidence 79999986 789999999741 1122333322222689999995 5889999877777754
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.70 E-value=0.025 Score=51.37 Aligned_cols=177 Identities=10% Similarity=0.023 Sum_probs=111.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++..................+.|.+.++.|+.+. .++.|..++++... ...........+..+++++. +.
T Consensus 32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~-~~ 106 (289)
T cd00200 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPD-GR 106 (289)
T ss_pred EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCccc---ceEEEeccCCcEEEEEEcCC-CC
Confidence 566677665222233333334445899998876666655 57889999988642 22223333346777888765 56
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
++++....+.|.+.++........+......+..++++|.+.+++.+. ....|...++.. ......+..+......
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~--~~~~~~~~~~~~~i~~ 182 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRT--GKCVATLTGHTGEVNS 182 (289)
T ss_pred EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccc--cccceeEecCccccce
Confidence 666666678999999985444444433455689999999866666554 245677777764 2222223333345778
Q ss_pred EEEeccccEEEEeccceeeeeeecccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.++..++.|+.+.. .+.|...++..
T Consensus 183 ~~~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 183 VAFSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred EEECCCcCEEEEecC-CCcEEEEECCC
Confidence 888877667777765 67777777654
No 92
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.66 E-value=0.02 Score=52.06 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=110.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++........+......+.++.+++.+ .++++...++.|..++++.. .....+......+..+++++.+..
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCCE
Confidence 66777776533333444445578899999874 45556556889999998843 222233333446788999886444
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+ ++....+.|.+.++........+.........++++|.+..|+.+. . ...|...++.. .........+...+..
T Consensus 150 l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-~~~i~i~d~~~--~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 150 V-ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-S-DGTIKLWDLST--GKCLGTLRGHENGVNS 224 (289)
T ss_pred E-EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-C-CCcEEEEECCC--CceecchhhcCCceEE
Confidence 4 4444578899999985544444434445788999999877777765 2 56677778764 2222222223335777
Q ss_pred EEEeccccEEEEeccceeeeeeecccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
++++.. +.++.+....+.|...+.+.
T Consensus 225 ~~~~~~-~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 225 VAFSPD-GYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEEcCC-CcEEEEEcCCCcEEEEEcCC
Confidence 888855 55555554566777666653
No 93
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.62 E-value=0.008 Score=56.06 Aligned_cols=131 Identities=14% Similarity=0.029 Sum_probs=79.5
Q ss_pred cccCCCC-cee-----EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe
Q psy13629 98 EKLQPDG-AYL-----LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 171 (395)
Q Consensus 98 ~~~~~~~-~~~-----~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~ 171 (395)
..+++|+ +++ +-|-++|....+..+..+..-.+|.|+-..++++ .+++|... .|.|++.+.- +.+....
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~---evt~f~l 141 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTL---EVTRFPL 141 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCccc---ceEEeec
Confidence 4677776 555 3566677666444556677778899999998765 56677544 8988887643 2233222
Q ss_pred C---CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 172 N---GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 172 ~---~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
. .-.+-+-..+|. .|+|+||.. .+.-.+.|......++.-.....-|+||++.| +|.+|++.
T Consensus 142 p~~~a~~nlet~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyas 206 (353)
T COG4257 142 PLEHADANLETAVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYAS 206 (353)
T ss_pred ccccCCCcccceeeCC-CccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEe
Confidence 2 224455677886 788888874 23333444444444444334455667777666 44555553
No 94
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.57 E-value=0.0044 Score=61.59 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=92.2
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 219 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~ 219 (395)
.+.+|+++..++.|..++.+.. +....+..+..-+.++++.+.++.+|.++. .+.|.+.|+.......-+ .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i-~~G~~ 79 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATI-KVGGN 79 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEE-E-SSE
T ss_pred ccEEEEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEE-ecCCC
Confidence 3566788888899998887754 223333333333566788888899999986 589999999887755445 45678
Q ss_pred ceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC----c--CceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 220 PRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI----F--WPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 220 P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~----~--~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
|++++++++.+++|++++. .+.+..++.... ...+.+-.... . .+.++.-.+.+...+++--..+.|..+++
T Consensus 80 ~~~i~~s~DG~~~~v~n~~-~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYE-PGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEE--TTTEEEEEEEE-TTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred cceEEEcCCCCEEEEEecC-CCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 9999999999999999966 567777776541 22222222111 1 12345444444444444455688888886
Q ss_pred ccc
Q psy13629 294 DGY 296 (395)
Q Consensus 294 dG~ 296 (395)
...
T Consensus 158 ~d~ 160 (369)
T PF02239_consen 158 SDP 160 (369)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
No 95
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.55 E-value=0.0045 Score=57.69 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=114.8
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
..+..++.-..+..++-+++ +.+++++...+.|-+.+.... +.+.+......+|.+|.+++ .+..++||..+ .|
T Consensus 53 ~~~fpvp~G~ap~dvapapd-G~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI 126 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AI 126 (353)
T ss_pred cceeccCCCCCccccccCCC-CceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECC-CCCeeEecCcc-ee
Confidence 34455666777888888865 568888888999998888765 66778888889999999998 78888999876 89
Q ss_pred EEEECCCCceEEEE---ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 200 EVSSLDGKKRKVLY---WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 200 ~v~~ldg~~~~~l~---~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
.|.+......+..- .....+-+..++|+ .|.|++|.... .--|.+... ...+++-...-.-|+||+.. .++
T Consensus 127 ~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G--~yGrLdPa~--~~i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 127 GRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQIG--AYGRLDPAR--NVISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEecCcccceEEeecccccCCCcccceeeCC-CccEEEeeccc--cceecCccc--CceeeeccCCCCCCcceEEC-CCC
Confidence 99887544433322 12345566788997 67888887321 112333322 23344433445579999999 456
Q ss_pred EEEEeccceeeeeeecc-cc
Q psy13629 277 LLYWIDGRLTFIEVMDY-DG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~-dG 295 (395)
.+|++.-..+.|.++|. +|
T Consensus 201 svwyaslagnaiaridp~~~ 220 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cEEEEeccccceEEcccccC
Confidence 79999888888888884 44
No 96
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0092 Score=56.22 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=109.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC---ceEEEEeC----CCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG---SKHNVITN----GLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~---~~~~i~~~----~~~~p~glA 181 (395)
.|-.++..|+---+...+..+.+.+|+|-. ++..-.+|...++++.+.++-.... ....+... .-..=+|+|
T Consensus 109 ~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA 187 (316)
T COG3204 109 AIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLA 187 (316)
T ss_pred eEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeee
Confidence 555566666333456677889999999974 4555567778888888888754210 00112221 123468999
Q ss_pred EecCCCeEEEEeCCC-CeEEEEECCCCceEEEEec----C----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 182 IDWLTEKLYWTDSET-NKLEVSSLDGKKRKVLYWE----D----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 182 VD~~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~----~----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.|+.++.+|++-..+ -.|+..+..-+....-+.. . +....|+.+|+.++.|++-. .++..+...+.+|..
T Consensus 188 ~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr~l~Evd~~G~~ 266 (316)
T COG3204 188 WDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESRRLLEVDLSGEV 266 (316)
T ss_pred cCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe-cCCceEEEEecCCCe
Confidence 999999999886432 3555555333222111111 1 34567899999999988765 467888999999942
Q ss_pred cceEEEEe------cCCcCceeEEEeccccEEEEec
Q psy13629 253 RHRKVIVD------STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 253 ~~~~~lv~------~~~~~P~glalD~~~~rLYwaD 282 (395)
...-.+.. .++.+|-|+|+| +++.||.+-
T Consensus 267 ~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS 301 (316)
T COG3204 267 IELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS 301 (316)
T ss_pred eeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence 22222222 147799999999 778899875
No 97
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.042 Score=55.75 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=112.1
Q ss_pred eEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCE---EEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 107 LLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM---VCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 107 ~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~---lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
..+|.+++.+| .+...+.........-.|+++++. +|.+... ...|+..++++. ..+.+.. ........++
T Consensus 164 ~~~l~~~d~dG-~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~-~~g~~~~p~w 238 (428)
T PRK01029 164 QGELWSVDYDG-QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILA-LQGNQLMPTF 238 (428)
T ss_pred cceEEEEcCCC-CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeec-CCCCccceEE
Confidence 45788888888 454445444444455689999875 3456533 357999999986 3333332 2223345678
Q ss_pred ecCCCeEEEEeC--CCCeEEEE--ECCC---CceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcc
Q psy13629 183 DWLTEKLYWTDS--ETNKLEVS--SLDG---KKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRH 254 (395)
Q Consensus 183 D~~~~~LYwtd~--~~~~I~v~--~ldg---~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~ 254 (395)
.+.++.|.|+-. +...|++. ++++ ...+.+...........+++|++++|+++. ..+...|++.++++....
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 888888888763 23356664 4442 233344423233345678999988777654 345678999988752122
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
.+.+... .......+..+++++|+++... ...|...++++...+.
T Consensus 319 ~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 319 PRLLTKK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred eEEeccC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 3333222 2233456778888888887432 3467888877665543
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.41 E-value=0.062 Score=50.41 Aligned_cols=172 Identities=13% Similarity=0.020 Sum_probs=108.6
Q ss_pred EEEEEeeCCCCCcc--EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKP--VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~--~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|+++++.. .+. ....+..--..|++.- +++||---+.++..++++.+.-. ...+... ...--||+-|
T Consensus 68 S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~--~~~~~~y--~~EGWGLt~d-- 138 (264)
T PF05096_consen 68 SSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK--KIGTFPY--PGEGWGLTSD-- 138 (264)
T ss_dssp EEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEE---SSS--EEEEC--
T ss_pred EEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce--EEEEEec--CCcceEEEcC--
Confidence 5889999987 333 3334444456778775 67899999999999999998531 2222322 2467789966
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE--Ee-c--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL--YW-E--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l--~~-~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
+..||.+|. +++|...|+..-..... +. . ....-+-|..- +|+||-.-|. ...|.++++.. ....-.++
T Consensus 139 g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~-td~I~~Idp~t--G~V~~~iD 212 (264)
T PF05096_consen 139 GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ-TDRIVRIDPET--GKVVGWID 212 (264)
T ss_dssp SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT-SSEEEEEETTT---BEEEEEE
T ss_pred CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC-CCeEEEEeCCC--CeEEEEEE
Confidence 678999985 68899999875433221 11 1 14455566664 8999988887 78999999975 23322222
Q ss_pred -cC--------------CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 -ST--------------IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 -~~--------------~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+. ..--||||.|...+++|++=-.=.+++.+.+.
T Consensus 213 ls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 213 LSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp -HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred hhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 11 12479999999999999997666677666554
No 99
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.019 Score=54.13 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=116.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEE-EeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYW-TDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYw-td~~~~~I~v~~ld 205 (395)
...+..+|.|+++.+.||.+-...-.|....++|. -..++...++..|++|++ ++++.|. +|....+++...++
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd---lirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD---LIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCc---eEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEc
Confidence 34568899999999999998777778999999997 567788888999999987 4566655 56667788877776
Q ss_pred CCceEEEEec------C----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc----------ceEEEEecCCcC
Q psy13629 206 GKKRKVLYWE------D----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR----------HRKVIVDSTIFW 265 (395)
Q Consensus 206 g~~~~~l~~~------~----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~----------~~~~lv~~~~~~ 265 (395)
.......+.. . -.--.|+|-||.++.||++--...-.|+.....-..- .+..++. -
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~----D 234 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL----D 234 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee----c
Confidence 5533222211 1 1123589999999999998744556677766432100 1112222 3
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
-.|+..|...+.|++.-..+..+..++.+|..+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~ 268 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIE 268 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCeee
Confidence 5788888888899998888888888888887643
No 100
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.31 E-value=0.048 Score=55.28 Aligned_cols=176 Identities=8% Similarity=0.069 Sum_probs=107.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.++.+ .....+..........+|++++++|+++-..++ .|+.+++++. ....+. .........+..+.+
T Consensus 229 ~i~i~dl~t-g~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~~~~lt-~~~~~~~~~~wSpDG 303 (429)
T PRK01742 229 QLVVHDLRS-GARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG---TPSQLT-SGAGNNTEPSWSPDG 303 (429)
T ss_pred EEEEEeCCC-CceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC---CeEeec-cCCCCcCCEEECCCC
Confidence 477788766 333333333334457899999999988743333 5778888765 223332 233345678888888
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCc
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~ 264 (395)
+.|+++.. +..+|+..+.++...+.+ .... ...+++|++++|+.+. ...|.+.++.+ ...+.+....
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~---~~~i~~~Dl~~--g~~~~lt~~~-- 372 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMIN---GDNVVKQDLTS--GSTEVLSSTF-- 372 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEc---CCCEEEEECCC--CCeEEecCCC--
Confidence 88887753 345788888877655443 2221 4567899999988775 24577788775 3333333221
Q ss_pred CceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 265 WPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++.. ....++.++.+|...+.
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 1234567777888887753 22334555677765544
No 101
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.28 E-value=0.0064 Score=63.26 Aligned_cols=154 Identities=11% Similarity=-0.016 Sum_probs=95.7
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe--cCCC-----------------eEEEEeCCCCe
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID--WLTE-----------------KLYWTDSETNK 198 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD--~~~~-----------------~LYwtd~~~~~ 198 (395)
++++.||.-|..+.+|-|++++--. ..+.+-........|+... +.++ .++-++...+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~--~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~ 216 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMK--CDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSL 216 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEe--eceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEE
Confidence 4578899999888999999998531 1123334445556666654 2333 34444444566
Q ss_pred EEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC-------------C-------------------------
Q psy13629 199 LEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-------------V------------------------- 240 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~-------------~------------------------- 240 (395)
+.+.|.+.....--+ ....+|+.++++++.+++|+|.... .
T Consensus 217 vSvID~etmeV~~qV-~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 217 FTAVDAETMEVAWQV-MVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEEECccceEEEEE-EeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 677766643332111 1244899999999999999995211 0
Q ss_pred CeEEEEecCC-----CCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 241 PKIERGAMNG-----DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 241 ~~I~~~~~dG-----~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.+|..++... ....+.+.+ -..|+|++++++++++|++...++.|+++++....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 1122222110 000111112 23799999999999999999999999999987644
No 102
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.22 E-value=0.00084 Score=40.52 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.8
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
+..|.|||+| .+|+||++|.++++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3579999999 699999999999999874
No 103
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.12 E-value=0.035 Score=57.95 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=112.1
Q ss_pred ccCCCCcee-------EEEEEeeCCC-CCccEEecCCCCCeEEEEEE--cCCCEEEEEEC-----------------CCC
Q psy13629 99 KLQPDGAYL-------LDIRIANLSR-PLKPVTIIKDLEEGAAIDYY--YKKSMVCWTDH-----------------GTE 151 (395)
Q Consensus 99 ~~~~~~~~~-------~~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d--~~~~~lywsd~-----------------~~~ 151 (395)
....|+.|+ ..+-+++++- +....+.+++.....|+.+. +.++.+|.... ..+
T Consensus 136 ~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~ 215 (635)
T PRK02888 136 DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS 215 (635)
T ss_pred CCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence 455556665 3667777776 33344557888888888887 56777665432 113
Q ss_pred eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC-----------------------------------
Q psy13629 152 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET----------------------------------- 196 (395)
Q Consensus 152 ~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~----------------------------------- 196 (395)
.+..++.+.-. -...+... ..|..+++++.++.+|+|....
T Consensus 216 ~vSvID~etme--V~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 216 LFTAVDAETME--VAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred EEEEEECccce--EEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34444433211 11222232 3899999999889999885211
Q ss_pred ----CeEEEEECCC-----CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC-------cceEEEEe
Q psy13629 197 ----NKLEVSSLDG-----KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP-------RHRKVIVD 260 (395)
Q Consensus 197 ----~~I~v~~ldg-----~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~-------~~~~~lv~ 260 (395)
+++.+.|... ......+ ....+|.|++++|+.+++|++.. ..+.|..+++.... .-+.+++.
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 3344444433 1122222 45789999999999999999984 47788888886411 11223333
Q ss_pred c-C-CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 S-T-IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 ~-~-~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+ . -..|-..++|-. ++.|.+=--...|..-+++
T Consensus 370 evevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 370 EPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred eeccCCCcceEEECCC-CCEEEeEeecceeEEEehH
Confidence 2 1 225877888844 4688774333444444433
No 104
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.10 E-value=0.0009 Score=40.38 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.5
Q ss_pred cCceeEEEeccccEEEEeccceeeeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
.+|.|+++| .+++||++|.+.++|.+
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 579999999 88999999999998865
No 105
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.08 E-value=0.052 Score=55.16 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE------e-cCCCCceeEEEeCC------CCeEE
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY------W-EDIDQPRAIALVPQ------DSIMF 233 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~------~-~~~~~P~~iavdp~------~g~LY 233 (395)
..++..++..|.+|++.+ .++||++++..++|.+.+.++.....+. . ....-+.|||++|. +++||
T Consensus 22 ~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 456677899999999998 6789999987799999987664433221 1 13455799999976 46889
Q ss_pred EEeeC--------CCCeEEEEecCCC---CcceEEEEecC----CcCceeEEEeccccEEEEe
Q psy13629 234 WTDWG--------EVPKIERGAMNGD---PRHRKVIVDST----IFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 234 wtd~~--------~~~~I~~~~~dG~---~~~~~~lv~~~----~~~P~glalD~~~~rLYwa 281 (395)
++-.. ...+|.|+.++.. ....+.++... .+.-..|+++++ +.||++
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs 162 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYT 162 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEE
Confidence 87421 2468999988631 23345555431 233456888865 569996
No 106
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.04 E-value=0.27 Score=46.17 Aligned_cols=158 Identities=11% Similarity=0.003 Sum_probs=104.1
Q ss_pred eEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.-||.|+ .++.||-|....+ .|.+++++... .....-...--.-+||++- +++||--.+..+...++|.+.-.
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 4678885 3567998886544 79999998753 2234444555578999995 78999999999999999998755
Q ss_pred eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC---CcCceeEEEeccccEEEEeccce
Q psy13629 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST---IFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 209 ~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~---~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...-+ .-..+..||+-| +..|+.|| | +.+|+..+.+.-...+++-|..+ +.+-|.|.. .++.||=--+..
T Consensus 122 ~~~~~-~y~~EGWGLt~d--g~~Li~SD-G-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTF-PYPGEGWGLTSD--GKRLIMSD-G-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQT 194 (264)
T ss_dssp EEEEE-E-SSS--EEEEC--SSCEEEE--S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETTS
T ss_pred EEEEE-ecCCcceEEEcC--CCEEEEEC-C-ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCCC
Confidence 54434 223578999965 77899999 5 67898888765323444444432 334555554 478888778999
Q ss_pred eeeeeeccccceeee
Q psy13629 286 TFIEVMDYDGYVRLV 300 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~ 300 (395)
+.|.++|+....+..
T Consensus 195 d~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 195 DRIVRIDPETGKVVG 209 (264)
T ss_dssp SEEEEEETTT-BEEE
T ss_pred CeEEEEeCCCCeEEE
Confidence 999999986655544
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.43 E-value=0.086 Score=52.63 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=88.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+-+++.++ .+...+.++++++.++..++.++++.+++ ....|+.++++.. +.+.+-...-.-..++++.+..+-
T Consensus 383 ~l~iyd~~~-~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 383 KLGIYDKDG-GEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred eEEEEecCC-ceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCcee
Confidence 445667766 66778889999999999999999888887 6678999999976 334333334445667777666665
Q ss_pred EEEEe---CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 189 LYWTD---SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 189 LYwtd---~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
|-++- ..+..|.+++++|...-.+. +.-..-.+-|+||+.++||+-.
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 54332 23568999999997665554 4455566778999999999865
No 108
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.42 E-value=0.49 Score=46.13 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCCCeEEEEEEcCCCEEE-EEECCC----CeEEEEEccCC--CCCce---EEEEeCC---------CCCcceEEEecCC
Q psy13629 126 KDLEEGAAIDYYYKKSMVC-WTDHGT----EMISCCTFDGN--NVGSK---HNVITNG---------LITPDGLAIDWLT 186 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~ly-wsd~~~----~~I~~~~~dg~--~~~~~---~~i~~~~---------~~~p~glAVD~~~ 186 (395)
...+...||++++..+.+| .+|... -+++++.++.. ..... ..+.... ...++||++ ..+
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 4567789999996444433 334332 23777666541 10010 1111111 127889999 569
Q ss_pred CeEEEEeCCC------CeEEEEECCCCceEEE-EecC-------------CCCceeEEEeCCCCeEEEEe
Q psy13629 187 EKLYWTDSET------NKLEVSSLDGKKRKVL-YWED-------------IDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 187 ~~LYwtd~~~------~~I~v~~ldg~~~~~l-~~~~-------------~~~P~~iavdp~~g~LYwtd 236 (395)
+.+||++... .+|.+++++|...+.+ +... -.-..+||+.|+++.||..-
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 9999999999 9999999999876554 2221 12356899999988788664
No 109
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.12 Score=51.37 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCeEEEEEEcCCCEEEEEECCC-------------CeEEEEEccCCCC----CceEEEEeCCCCCcceEEEecCCCeEEE
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGT-------------EMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDWLTEKLYW 191 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~-------------~~I~~~~~dg~~~----~~~~~i~~~~~~~p~glAVD~~~~~LYw 191 (395)
....-|.|++++ +||++=... ++|.+...++.-. .....+..-++.+|.|++.++.++.||.
T Consensus 177 H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 177 HFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred cCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 345678999988 999985443 4555555443210 1123466668899999999999999999
Q ss_pred EeCCCCeE------EEE---------------ECCCC------ceEEEEe-----cCCCCceeEEEeCCC------CeEE
Q psy13629 192 TDSETNKL------EVS---------------SLDGK------KRKVLYW-----EDIDQPRAIALVPQD------SIMF 233 (395)
Q Consensus 192 td~~~~~I------~v~---------------~ldg~------~~~~l~~-----~~~~~P~~iavdp~~------g~LY 233 (395)
++.+...+ .+. +.+|. .....+. ..-..|.|+++..-+ +.||
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 99655222 111 01111 1111111 123456888887432 6888
Q ss_pred EEeeCCCCeEEEEecCCCC-cceEEEEec-CCcCceeEEEeccccEEEEeccc-eeeeeeecccc
Q psy13629 234 WTDWGEVPKIERGAMNGDP-RHRKVIVDS-TIFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYDG 295 (395)
Q Consensus 234 wtd~~~~~~I~~~~~dG~~-~~~~~lv~~-~~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~dG 295 (395)
+..-+ ...+.+.+.+|.. ...+.++.. .-+.|.++++..+ +-||++|-. +.+|.++...+
T Consensus 336 V~~hg-sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~D-Gallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 336 VGAHG-SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPD-GALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEeec-ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCC-CeEEEeecCCCCeEEEecCCC
Confidence 88854 5567888888831 122233332 2258999999955 556666644 66999988765
No 110
>KOG0291|consensus
Probab=96.29 E-value=0.67 Score=48.91 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=114.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.+...+.=.....+......|+.|...++.|+-+. -+++|...++..-. +.++.......+-..+|||+.+..
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS-LDGtVRAwDlkRYr--NfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS-LDGTVRAWDLKRYR--NFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee-cCCeEEeeeecccc--eeeeecCCCceeeeEEEEcCCCCE
Confidence 455555543222445566778889999998777666554 67888888887543 567777777778889999997777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC-CCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-GDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-G~~~~~~~lv~~~~~~P~ 267 (395)
+...+...-.|.+-++.......+++..-.-..+|.++|.+..|+=..|...-||+-+--. | +..++-+.. -.-
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEtl~i~s---dvl 524 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVETLEIRS---DVL 524 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--eeeeEeecc---cee
Confidence 7666666778999999988887777544445678999999999998888755444433322 2 222222222 255
Q ss_pred eEEEeccccEEEEecc
Q psy13629 268 GIAIDFNNRLLYWIDG 283 (395)
Q Consensus 268 glalD~~~~rLYwaD~ 283 (395)
++++-+++++|-++-.
T Consensus 525 ~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATL 540 (893)
T ss_pred EEEEcCCCCeEEEEEe
Confidence 6677777888877753
No 111
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.27 E-value=1.4 Score=43.78 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=98.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEE----cCCC---EEEEEECCC--CeEEEEEccCCCCCceEEE------EeCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYY----YKKS---MVCWTDHGT--EMISCCTFDGNNVGSKHNV------ITNG 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d----~~~~---~lywsd~~~--~~I~~~~~dg~~~~~~~~i------~~~~ 173 (395)
.+.+++++| .....+. .++++.+|.- ..++ .+..++..+ ++|..+.++.... ....+ +...
T Consensus 79 GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 79 GLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-ELTDVTDPAAPIATD 154 (381)
T ss_dssp EEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-EEEE-CBTTC-EE-S
T ss_pred CEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-cceEcCCCCcccccc
Confidence 678899988 4444332 3556655542 2233 346667543 5666666654211 11222 1234
Q ss_pred CCCcceEEE--ecCCCeEEEE-eCCCCeEEEEECC--CC--ceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEE
Q psy13629 174 LITPDGLAI--DWLTEKLYWT-DSETNKLEVSSLD--GK--KRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIE 244 (395)
Q Consensus 174 ~~~p~glAV--D~~~~~LYwt-d~~~~~I~v~~ld--g~--~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~ 244 (395)
+..|.|+++ +..++.+|.. ....+.+..+.|. +. ..-.++. ....+|.||++|...++||+.+ . ..-|+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgE-E-~~GIW 232 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGE-E-DVGIW 232 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEE-T-TTEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEec-C-ccEEE
Confidence 566889987 5566777654 3334667666653 32 2222222 3456899999999999999998 2 45688
Q ss_pred EEecCCCCc-ceEEEEec---CC-cCceeEEEec---cccEEEEeccceeeeeeeccccce
Q psy13629 245 RGAMNGDPR-HRKVIVDS---TI-FWPNGIAIDF---NNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 245 ~~~~dG~~~-~~~~lv~~---~~-~~P~glalD~---~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+.+.+-... .++.+... ++ .-.-||+|-+ ..+.|.+++.+.++..+.+..+..
T Consensus 233 ~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 233 RYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 888763223 33333221 12 3567888853 235788888888777666665543
No 112
>KOG0266|consensus
Probab=96.03 E-value=1 Score=46.01 Aligned_cols=133 Identities=10% Similarity=0.057 Sum_probs=93.4
Q ss_pred EEEEeeCCC-CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++.. ......+........+++|++.+ .+..+...++.|...+..+. .....+...-....++++.. .+
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~---~~~~~l~~hs~~is~~~f~~-d~ 300 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTG---ECVRKLKGHSDGISGLAFSP-DG 300 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCC---eEEEeeeccCCceEEEEECC-CC
Confidence 778888833 23455666777788999999998 77778878999999999874 33444445556788999997 55
Q ss_pred eEEEEeCCCCeEEEEECCCCce--EEEEecCCCCc---eeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQP---RAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~--~~l~~~~~~~P---~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
++.++....+.|.+.|+.+... ...+ .....+ +.+.++|...+|+..- . ...+...++.
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~-~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSAS-L-DRTLKLWDLR 364 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEEECCCCcEEEEec-C-CCeEEEEEcc
Confidence 5556667799999999998883 3333 334444 8888888777765443 2 3345555555
No 113
>KOG0279|consensus
Probab=96.02 E-value=1.4 Score=41.46 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=127.3
Q ss_pred ccCCCCcee------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC
Q psy13629 99 KLQPDGAYL------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 172 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~ 172 (395)
..++|+-|+ ..+|..|+.+......+....+...+++|++++++|. +...+++|...+.-|. ..-++...
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDkTiklwnt~g~---ck~t~~~~ 145 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRDKTIKLWNTLGV---CKYTIHED 145 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee-cCCCcceeeeeeeccc---EEEEEecC
Confidence 445555554 2678889888555667788888999999999887764 7778899999988875 33333333
Q ss_pred C-CCCcceEEEecCCCeEEEE-eCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 173 G-LITPDGLAIDWLTEKLYWT-DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 173 ~-~~~p~glAVD~~~~~LYwt-d~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
. -.-...+.+.|...+.|.. -+....+.+-|+++-..+.-....-...+.++++|+ |.|.-+- |+...++..+++-
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasG-gkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASG-GKDGEAMLWDLNE 223 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecC-CCCceEEEEEccC
Confidence 3 4557778888866455544 466788999999986665444355677899999995 4565553 5678899999985
Q ss_pred CCcceEEEEecCCcCceeEEEeccccEEEEecc-ceeeeeeeccccceeee
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG-RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~-~~~~I~~~~~dG~~~~~ 300 (395)
.+.....+...-.+.+++.+ +| ||..+ ....|..-+++......
T Consensus 224 ---~k~lysl~a~~~v~sl~fsp--nr-ywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 224 ---GKNLYSLEAFDIVNSLCFSP--NR-YWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ---CceeEeccCCCeEeeEEecC--Cc-eeEeeccCCceEEEeccchhhhh
Confidence 23333334555567777763 23 55543 33445555666554443
No 114
>PTZ00421 coronin; Provisional
Probab=95.97 E-value=2.4 Score=43.86 Aligned_cols=183 Identities=10% Similarity=-0.038 Sum_probs=103.8
Q ss_pred EEEEeeCCCCC-------ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPL-------KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~-------~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|++.++.... ....+......+..++|++..+.++++...++.|..++++.. .....+........+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEE
Confidence 56666664311 122334455678899999987667777778899999998864 22223333344578888
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEE
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~l 258 (395)
+.+ .+.+.++-...+.|.+.|+...... .+..........+...+..+.++-+-+. ....|...++... ......
T Consensus 176 ~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~ 253 (493)
T PTZ00421 176 WNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM-ASPYST 253 (493)
T ss_pred EEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC-CCceeE
Confidence 887 4556667777899999998754433 2221222233455666666666544322 2345777776531 111111
Q ss_pred EecCCc-CceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 259 VDSTIF-WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 259 v~~~~~-~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...+.. ...-..+|.+++.||.+-...+.|...++...
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 111111 11112456667777776545677777766543
No 115
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.92 E-value=1.3 Score=44.57 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=94.9
Q ss_pred EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCce
Q psy13629 142 MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPR 221 (395)
Q Consensus 142 ~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~ 221 (395)
.+...+.....+..++.+|+ ....+...+.....++++..+..+-.++ ....|.+.+++....+.+-.....-..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred ceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCeeEecccccceeE
Confidence 34444434558888888885 2456677899999999999777777766 467899999999888777656666788
Q ss_pred eEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 222 AIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 222 ~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
+++.+|..+++-.+-.. ....|...+|+| ... .-+++...+-..=|+|++++.||+..
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~--~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--GKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCC--CeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 99999988877665432 246799999998 222 22333222233347999999999985
No 116
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.89 E-value=1.1 Score=42.88 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=101.4
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-----CCCCCceEEEEeC------CCCCcceEEEecCCCe-
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-----GNNVGSKHNVITN------GLITPDGLAIDWLTEK- 188 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-----g~~~~~~~~i~~~------~~~~p~glAVD~~~~~- 188 (395)
....-+++.++-||++.+.+ .++++|..++....++.+ |... .-++... ....|+|+++......
T Consensus 15 A~~tDp~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~--~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 15 AQIVDPGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQD--PLVVVIPAPPPLAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred ccccCccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCcc--ceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence 44566789999999999854 688888888887777776 4321 1122222 2357999998754332
Q ss_pred ------------EEEEeCCCCeEEEEECCC--C---ceEEEEec--CCCCceeEEEeCC--CCeEEEEeeCCCCeEEEEe
Q psy13629 189 ------------LYWTDSETNKLEVSSLDG--K---KRKVLYWE--DIDQPRAIALVPQ--DSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 189 ------------LYwtd~~~~~I~v~~ldg--~---~~~~l~~~--~~~~P~~iavdp~--~g~LYwtd~~~~~~I~~~~ 247 (395)
||.+ +.++|.-.+..- . ...+++.. ....=+|+|+... ..+||-+|.. +.+|.+.+
T Consensus 92 vt~~g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd 168 (336)
T TIGR03118 92 VSGEGITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK 168 (336)
T ss_pred EcCCCcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec
Confidence 3333 345565554322 2 11123322 2445578888754 6799999975 78888775
Q ss_pred cCCCCcceEEEEe-----cC---CcCceeEEEeccccEEEEecc-------------ceeeeeeeccccceeee
Q psy13629 248 MNGDPRHRKVIVD-----ST---IFWPNGIAIDFNNRLLYWIDG-------------RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 248 ~dG~~~~~~~lv~-----~~---~~~P~glalD~~~~rLYwaD~-------------~~~~I~~~~~dG~~~~~ 300 (395)
-+- +++.+. .. -.-|.++.- .+++||++-+ ....|.+.+++|.-.+.
T Consensus 169 ~~f----~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r 236 (336)
T TIGR03118 169 GSF----RPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR 236 (336)
T ss_pred Ccc----ccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE
Confidence 432 211111 11 123555543 4789999843 23578888999987765
No 117
>KOG0310|consensus
Probab=95.86 E-value=0.88 Score=45.61 Aligned_cols=195 Identities=7% Similarity=0.015 Sum_probs=120.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
-++++|.....-...+........-.-|.+..+.++.+...++.+...++++. ..+.-+...-...+..++-+.+++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---YVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---EEEEEecCCcceeEeeccccCCCe
Confidence 45667743311122233344456677899999999999877777777888875 333334444567889999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe--cCCcCc
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD--STIFWP 266 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~--~~~~~P 266 (395)
|.+|-+..+.|...+.......+ ..-+-..|-.-++--.+|-++.+. | .+.|...++-+ +++.+.. .+..--
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v-~elnhg~pVe~vl~lpsgs~iasA-g-Gn~vkVWDl~~---G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRV-VELNHGCPVESVLALPSGSLIASA-G-GNSVKVWDLTT---GGQLLTSMFNHNKTV 241 (487)
T ss_pred EEEecCCCceEEEEEeccCCcee-EEecCCCceeeEEEcCCCCEEEEc-C-CCeEEEEEecC---CceehhhhhcccceE
Confidence 99999999999999987764322 223344455444444567777777 3 56788888874 2333333 244556
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeec
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCN 313 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d 313 (395)
+.|.+..++.||+-+-- +.+|...++..-.... .-.+.+ +++++++
T Consensus 242 TcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred EEEEeecCCceEeeccc-ccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 67777766667765532 2344444433333322 222333 7777753
No 118
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.24 Score=49.35 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=86.4
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCe------EEEEEccCCCC----------------C---
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM------ISCCTFDGNNV----------------G--- 164 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~------I~~~~~dg~~~----------------~--- 164 (395)
+..++.+. ....+..-++.++.|++|++.++.||.++.+... +.+. .+|.+. .
T Consensus 221 ~~~~d~p~-~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~~~~~ 298 (399)
T COG2133 221 IIPADNPF-PNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAIPDGT 298 (399)
T ss_pred ccccCCCC-CCcceEEeccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCcccCccccCCCc
Confidence 34445555 4456778889999999999999999999976622 2221 111100 0
Q ss_pred ce-----EEEEeCCCCCcceEEEecCC------CeEEEEeCCCCeEEEEECCCCce---EEEEec-CCCCceeEEEeCCC
Q psy13629 165 SK-----HNVITNGLITPDGLAIDWLT------EKLYWTDSETNKLEVSSLDGKKR---KVLYWE-DIDQPRAIALVPQD 229 (395)
Q Consensus 165 ~~-----~~i~~~~~~~p~glAVD~~~------~~LYwtd~~~~~I~v~~ldg~~~---~~l~~~-~~~~P~~iavdp~~ 229 (395)
.. ..........|.||++=.-+ +.+|+.....-.+.+.+++|..+ +..+.. ....|+++++.+ +
T Consensus 299 ~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-D 377 (399)
T COG2133 299 VVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-D 377 (399)
T ss_pred ccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC-C
Confidence 00 00111122456788885322 67888876666788899999833 334432 236999999998 5
Q ss_pred CeEEEEeeCCCCeEEEEecCC
Q psy13629 230 SIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 230 g~LYwtd~~~~~~I~~~~~dG 250 (395)
|.||++|-....+|.|+..++
T Consensus 378 Gallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 378 GALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred CeEEEeecCCCCeEEEecCCC
Confidence 567777634466899987765
No 119
>KOG0315|consensus
Probab=95.43 E-value=2.2 Score=39.59 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=93.8
Q ss_pred EEEEEeeCCCCCc-cEE-ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLK-PVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~-~~~-~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..||.+|+..... ... +....+++.++.|..+++.+| +..+++++...++..- ..+...... .-.+.+.+.+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~---~~qR~~~~~-spVn~vvlhpn 135 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSL---SCQRNYQHN-SPVNTVVLHPN 135 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCc---ccchhccCC-CCcceEEecCC
Confidence 4788899877322 333 334558999999998877766 6668899998888863 222333322 45678899998
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
...|+..|. ++.|.+-|+....+. .++.+.......++++|+..+|--.+ ...+-+..+|-+
T Consensus 136 QteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccC
Confidence 889988885 578999999877444 56666778889999999877765443 234455555533
No 120
>KOG0291|consensus
Probab=95.27 E-value=3.7 Score=43.60 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=109.0
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+.+..+.. +.++.- .....+...++|++++. +..+...+++|..++...+ .--....+.-...+++.+.- .+
T Consensus 331 QLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~-~g 404 (893)
T KOG0291|consen 331 QLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTA-RG 404 (893)
T ss_pred eEEEEEeec-cceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEe-cC
Confidence 344455544 223222 23477899999998765 5567888999999998764 22233334445677777764 45
Q ss_pred eEEEEeCCCCeEEEEECCC-CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg-~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+.-++.+-.+++...|+.- ++-+++....-.+-..+|+||.+..++-.+ -+.-.|+..++.. ....-+++.+-+-.
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~-~d~F~IfvWS~qT--GqllDiLsGHEgPV 481 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA-QDSFEIFVWSVQT--GQLLDILSGHEGPV 481 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec-cceEEEEEEEeec--CeeeehhcCCCCcc
Confidence 5555666667777666653 333455545556667899999766665544 3466788888875 33444445554556
Q ss_pred eeEEEeccccEEEEeccceeeeeeec
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.+|.+++.+..|+-+-| +++|..=+
T Consensus 482 s~l~f~~~~~~LaS~SW-DkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSW-DKTVRIWD 506 (893)
T ss_pred eeeEEccccCeEEeccc-cceEEEEE
Confidence 78899988887776655 34554333
No 121
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.06 E-value=0.39 Score=46.73 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCeEEEEeC----CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-------C-CCCeEEEEecCCCCc
Q psy13629 186 TEKLYWTDS----ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-------G-EVPKIERGAMNGDPR 253 (395)
Q Consensus 186 ~~~LYwtd~----~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-------~-~~~~I~~~~~dG~~~ 253 (395)
.+++|+.|. ..++++++|.+.....-.+..++ .++ ++++|+++.+|.++- | ....|+..+...-..
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~-~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF-LGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES-SEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeeccc-CCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 367888884 34688888877766655553333 344 778999999998662 1 124466666654211
Q ss_pred ceEEEEecC-----CcCceeEEEeccccEEEEeccc-eeeeeeeccccceeeeeeecee-eeeeeeccCCccccceeeee
Q psy13629 254 HRKVIVDST-----IFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYDGYVRLVTSLGHI-NLELYCNVFPKTCENFMKHC 326 (395)
Q Consensus 254 ~~~~lv~~~-----~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~dG~~~~~t~~g~~-~i~Lf~d~ap~t~~nf~~l~ 326 (395)
..++.+-.. ...++-+++..+++++|+.+.. ...|.++|+....... ...-| ...+| |..-.+|..+|
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-ei~~PGC~~iy----P~~~~~F~~lC 154 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-EIDTPGCWLIY----PSGNRGFSMLC 154 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-EEEGTSEEEEE----EEETTEEEEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee-eecCCCEEEEE----ecCCCceEEEe
Confidence 222222221 3467778898889999999854 4789999998877754 22224 44456 33446899999
Q ss_pred ccce
Q psy13629 327 ENGY 330 (395)
Q Consensus 327 ~~g~ 330 (395)
.+|-
T Consensus 155 ~DGs 158 (342)
T PF06433_consen 155 GDGS 158 (342)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 8874
No 122
>KOG1984|consensus
Probab=95.02 E-value=0.014 Score=61.88 Aligned_cols=62 Identities=32% Similarity=0.553 Sum_probs=54.6
Q ss_pred ccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCCC---CCCccCcccccccCCCCcee
Q psy13629 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD---EMPVQERCSFEKLQPDGAYL 107 (395)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~~---~~~~~~~C~~~~~~~~~~~~ 107 (395)
.|+++|+|.+++..+.+|+++..+.+|||+|+|.+++.++.. ..|...+|+.|..+-.++|+
T Consensus 831 ~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYl 895 (1007)
T KOG1984|consen 831 QEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYL 895 (1007)
T ss_pred cccccchhHHHHHHhhcccHHhhhhhhccceeeeeccccccccccccccceecchhhccCCceEE
Confidence 789999999999999999999999999999999999988876 46777777777777667776
No 123
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.89 E-value=0.13 Score=39.81 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.0
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..++..++..|+||++|+.++.||+++...+.|.++...
T Consensus 46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 46 VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 345677889999999999999999999999999988754
No 124
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.88 E-value=1.9 Score=42.85 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=76.6
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----CCC---eEEEEeCC--CCeEEEEECCCC-
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW----LTE---KLYWTDSE--TNKLEVSSLDGK- 207 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~----~~~---~LYwtd~~--~~~I~v~~ldg~- 207 (395)
+....|.-||. .+-+..++++|. ..+.+- ...++.+.|-. .++ .+..++.. .++|..+.+++.
T Consensus 66 p~kSlIigTdK-~~GL~VYdL~Gk---~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDK-KGGLYVYDLDGK---ELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEET-TTEEEEEETTS----EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeC-CCCEEEEcCCCc---EEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 44455666663 456677777775 222221 23444443311 111 23556654 256666655542
Q ss_pred -ceEEE------EecCCCCceeEEEe--CCCCeEEEEeeCCCCeEEEEec--CCCCcceEEEEec--CCcCceeEEEecc
Q psy13629 208 -KRKVL------YWEDIDQPRAIALV--PQDSIMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS--TIFWPNGIAIDFN 274 (395)
Q Consensus 208 -~~~~l------~~~~~~~P~~iavd--p~~g~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~--~~~~P~glalD~~ 274 (395)
....+ +...+..|+|+++- +..|.+|..--++...++...+ ++...-.-.++.+ --.+|-|+++|-.
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 22222 22456789999985 5567777655444556666655 3321212223332 1347999999988
Q ss_pred ccEEEEeccceeeeeeeccc
Q psy13629 275 NRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 275 ~~rLYwaD~~~~~I~~~~~d 294 (395)
.++||+++.. .-|++.+.+
T Consensus 219 ~g~LYvgEE~-~GIW~y~Ae 237 (381)
T PF02333_consen 219 TGRLYVGEED-VGIWRYDAE 237 (381)
T ss_dssp TTEEEEEETT-TEEEEEESS
T ss_pred cCCEEEecCc-cEEEEEecC
Confidence 8999999976 458777764
No 125
>KOG1446|consensus
Probab=94.70 E-value=4.1 Score=38.83 Aligned_cols=173 Identities=9% Similarity=-0.001 Sum_probs=108.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
+||-+++.............+.+.+|...|.+ ..|.+...+++|+-+++.-. +-+.++. +..+.-.|.|+ .|.
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~---~cqg~l~--~~~~pi~AfDp-~GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVK---KCQGLLN--LSGRPIAAFDP-EGL 153 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCC---CCceEEe--cCCCcceeECC-CCc
Confidence 78888887734344555667789999999988 57889888999999999843 2233332 34556689998 677
Q ss_pred EEEEeCCCCeEEEEECCC----CceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe-cCCCCcceEEEEec-
Q psy13629 189 LYWTDSETNKLEVSSLDG----KKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA-MNGDPRHRKVIVDS- 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg----~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~-~dG~~~~~~~lv~~- 261 (395)
++.+-.+.+.|..+|+.- -...-.+. +...+-..|-++|+++.|-.+.-. ..++.++ .+| .-...+-..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--s~~~~lDAf~G--~~~~tfs~~~ 229 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--SFIYLLDAFDG--TVKSTFSGYP 229 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--CcEEEEEccCC--cEeeeEeecc
Confidence 777766666899988753 23333332 346677889999999999988833 3344444 466 322222221
Q ss_pred -CCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 262 -TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 262 -~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
....|-+-++.++++.+.-.. .+++|..-++
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~ 261 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGS-DDGTIHVWNL 261 (311)
T ss_pred CCCCcceeEEECCCCcEEEEec-CCCcEEEEEc
Confidence 222343444555555544443 3344544443
No 126
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.54 E-value=7 Score=42.88 Aligned_cols=163 Identities=8% Similarity=-0.064 Sum_probs=91.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC----CCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN----VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~----~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
....+.+++|++.++.|. +...++.|..++.+... ................+++.++..+....+-...+.|.+.
T Consensus 482 ~~~~V~~i~fs~dg~~la-tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFA-TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 455688899999876544 55578888888865310 0000111122223456666665445555666678899999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
++........+........+++++|.++.+++|- +....|...++... .....+ ... .....+.+...++.++.+-
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~Dg~v~iWd~~~~-~~~~~~-~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG-SDDGSVKLWSINQG-VSIGTI-KTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cCCCEEEEEECCCC-cEEEEE-ecC-CCeEEEEEeCCCCCEEEEE
Confidence 9887655444434456678999998777666665 43566777777641 111122 111 1233444432334444444
Q ss_pred cceeeeeeeccc
Q psy13629 283 GRLTFIEVMDYD 294 (395)
Q Consensus 283 ~~~~~I~~~~~d 294 (395)
..++.|...++.
T Consensus 637 s~dg~I~iwD~~ 648 (793)
T PLN00181 637 SADHKVYYYDLR 648 (793)
T ss_pred eCCCeEEEEECC
Confidence 445556555543
No 127
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.45 E-value=4.3 Score=39.15 Aligned_cols=193 Identities=13% Similarity=0.034 Sum_probs=110.8
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc-c---------CC-C-CCceEEEEeCCCCCc
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-D---------GN-N-VGSKHNVITNGLITP 177 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~-d---------g~-~-~~~~~~i~~~~~~~p 177 (395)
+..+..+.++........+.++.||+.+. +.||.+.. ..|+++.. + +. . .--.+.....+--..
T Consensus 30 L~~ig~~~~g~l~~~~r~F~r~MGl~~~~--~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidi 105 (335)
T TIGR03032 30 LFFIGLQPNGELDVFERTFPRPMGLAVSP--QSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDA 105 (335)
T ss_pred EEEEEeCCCCcEEEEeeccCccceeeeeC--CeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcch
Confidence 33444443345667777889999998864 66888753 35665511 1 10 0 000112222344567
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEECCCCce--------EEEEecCCCCceeEEEeCCCCeEEEEeeCCC--CeEEEEe
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR--------KVLYWEDIDQPRAIALVPQDSIMFWTDWGEV--PKIERGA 247 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~--------~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~--~~I~~~~ 247 (395)
.+||+ .++.+++.+..-+.+...+.+-+.. ..+..++-=+-||+|+.. .+--|+|..+.. +.-.|-+
T Consensus 106 Hdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR~~ 182 (335)
T TIGR03032 106 HDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWREG 182 (335)
T ss_pred hheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccccc
Confidence 78888 4778888887767777666655432 222223445678999973 556787765421 1222222
Q ss_pred cCCCCc----ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc-cceeeeee-ecee-eeeee
Q psy13629 248 MNGDPR----HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLVTS-LGHI-NLELY 311 (395)
Q Consensus 248 ~dG~~~----~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~t~-~g~~-~i~Lf 311 (395)
....+. ....++.+++..|.+--.. +++||++|+..+.+..++.+ |....+.. -|.+ +++..
T Consensus 183 ~~~gG~vidv~s~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 183 RRDGGCVIDIPSGEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred ccCCeEEEEeCCCCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 211000 0012333456677776665 79999999999999999997 77666632 2333 55544
No 128
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.43 E-value=1.5 Score=44.07 Aligned_cols=63 Identities=11% Similarity=0.255 Sum_probs=34.3
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE----EecC--------------CcCceeEEEeccccEEEE
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI----VDST--------------IFWPNGIAIDFNNRLLYW 280 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l----v~~~--------------~~~P~glalD~~~~rLYw 280 (395)
-+.+|.|+.+.++||++.|. ...|...++... .+.+.. +... .+.|+-|.+..+++||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~-~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-HGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-TTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEccc-CCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 46899999999999999998 566777777652 222221 1111 235888999999999999
Q ss_pred ecc
Q psy13629 281 IDG 283 (395)
Q Consensus 281 aD~ 283 (395)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 985
No 129
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.42 E-value=0.14 Score=39.68 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
|+..+++. +++..|+||+++|.+++||+++.. ...|....
T Consensus 43 ~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~-~~~I~vy~ 82 (86)
T PF01731_consen 43 GKEVKVVA-SGFSFANGIAISPDKKYLYVASSL-AHSIHVYK 82 (86)
T ss_pred CCEeEEee-ccCCCCceEEEcCCCCEEEEEecc-CCeEEEEE
Confidence 34444444 789999999999999999999954 45555544
No 130
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.36 E-value=0.23 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEe
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALV 226 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavd 226 (395)
.++.||.++...++|.+.|+.......-+ .....|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence 46789999999999999998765555445 346889999875
No 131
>KOG0273|consensus
Probab=94.33 E-value=4.4 Score=40.76 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=83.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.+.+| .....+-..-+.+.+|-|.-.+..|.-.+ .++++..++.-.. +....-.+.+..++.|||.+..
T Consensus 258 ~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~-vD~ttilwd~~~g-----~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 258 EARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGG-VDGTTILWDAHTG-----TVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred EEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEecc-CCccEEEEeccCc-----eEEEeeeeccCCccceEEecCc
Confidence 677788777 55555666677788888887777776555 4555544444321 1112223455568999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
=|.+....+.|.||.++++....-+...-...++|-.+|....| -|.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL-aS~ 377 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL-ASC 377 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceE-EEe
Confidence 99999989999999999988775554566778899999855444 444
No 132
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.23 E-value=2.4 Score=42.97 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=94.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC---CeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~---~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.++...|.++ .....+.........-+|.+.+.++.+..... .+|+..+++.+ ....++.- ...-..-++.+
T Consensus 173 ~~l~~~D~dg-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~~-~g~~~~P~fsp 247 (425)
T COG0823 173 YELALGDYDG-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILNF-NGNNGAPAFSP 247 (425)
T ss_pred ceEEEEccCC-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeecc-CCccCCccCCC
Confidence 3556666665 44444444444445556777777666554433 35888888875 33334331 12223345556
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEE-EeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW-TDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
.+++|-++-. +...|+++|++++....+. +....-..=.+.|+..+|++ +|.++.+.|++.+++| ...+.+...
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~ 324 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFS 324 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeecc
Confidence 6677777753 3557999999999866644 22221124456777777655 5555789999999999 444333332
Q ss_pred CCcCceeEEEeccccEEEEec
Q psy13629 262 TIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD 282 (395)
. +...--.+.+++++|-+..
T Consensus 325 ~-~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 325 G-GGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred C-CCCcCccCCCCCCEEEEEe
Confidence 2 1111223444555554444
No 133
>PTZ00421 coronin; Provisional
Probab=93.88 E-value=9.1 Score=39.62 Aligned_cols=124 Identities=7% Similarity=-0.056 Sum_probs=81.2
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC----ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~----~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
+....+.+.+++|++..+.+..+...++.|..+++...... .....+...-..+..+++.+..+++.++-...+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 44456678999999854445666668899999888643210 11112223335577888888766777787788999
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
.+.|+........+.......++|+++|....|.-+. ....|...++.
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs--~Dg~IrIwD~r 198 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS--KDKKLNIIDPR 198 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec--CCCEEEEEECC
Confidence 9999987655544433455678999998665554333 34556666664
No 134
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=93.82 E-value=0.82 Score=47.61 Aligned_cols=63 Identities=13% Similarity=0.330 Sum_probs=45.7
Q ss_pred CCCCcceEEEecCCCeEEEEeCCC-------------------CeEEEEECCCC-------ceEEEEe------------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSET-------------------NKLEVSSLDGK-------KRKVLYW------------ 214 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~~-------------------~~I~v~~ldg~-------~~~~l~~------------ 214 (395)
.+.+|+|+++++.++.+|++-... ++|.+..+++. ....++.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 457899999999999999997443 38999988875 2222221
Q ss_pred -----cCCCCceeEEEeCCCCeEEEEe
Q psy13629 215 -----EDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 215 -----~~~~~P~~iavdp~~g~LYwtd 236 (395)
..+..|-.|++|+. |.|++..
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEe
Confidence 12679999999996 4565553
No 135
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.74 E-value=13 Score=40.85 Aligned_cols=176 Identities=7% Similarity=-0.026 Sum_probs=96.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++..+.++++...++.|..+++.... ....+ . ....+..+++....++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~-~-~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTI-K-TKANICCVQFPSESGR 631 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEE-e-cCCCeEEEEEeCCCCC
Confidence 677788766333444455667789999998767778888788999999987542 11222 2 2234455555445577
Q ss_pred EEEEeCCCCeEEEEECCCCce-EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC--c--ceEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP--R--HRKVIVDSTI 263 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~-~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~--~--~~~~lv~~~~ 263 (395)
++.+-..++.|.+.++..... ...+.........+.+. ..+.|+ +- +....|...++.... . .....+..+.
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~-s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SS-STDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EE-ECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 777777889999999865432 22222233345666665 344443 33 223445555553100 0 1111122233
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeec
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
...+.+++++.++.| .+-..++.|...+
T Consensus 709 ~~i~~v~~s~~~~~l-asgs~D~~v~iw~ 736 (793)
T PLN00181 709 NVKNFVGLSVSDGYI-ATGSETNEVFVYH 736 (793)
T ss_pred CCeeEEEEcCCCCEE-EEEeCCCEEEEEE
Confidence 345667777655433 3333344454444
No 136
>KOG0289|consensus
Probab=93.61 E-value=8.6 Score=38.41 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=106.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--CCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--~~~~p~glAVD~~~ 186 (395)
.|++......+..+..........++..++.+..+.|++...-..+.-.-+|. .-+++.. .-......++++ .
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt~vs~~~s~v~~ts~~fHp-D 358 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLTVVSDETSDVEYTSAAFHP-D 358 (506)
T ss_pred eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc----EEEEEeeccccceeEEeeEcC-C
Confidence 45555544444555666677778999999999999999843333333333443 2223332 223467788887 8
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
|.||-+-..++.+...++.......-+...-.....|.+.. +||--.+.. +...|...++--. .+-+++...+....
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~a-dd~~V~lwDLRKl-~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAA-DDGSVKLWDLRKL-KNFKTIQLDEKKEV 435 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEe-cCCeEEEEEehhh-cccceeeccccccc
Confidence 89999988899999999876664444433445678899985 666555552 3444777777652 34555555554567
Q ss_pred eeEEEeccccEEEEe
Q psy13629 267 NGIAIDFNNRLLYWI 281 (395)
Q Consensus 267 ~glalD~~~~rLYwa 281 (395)
+.+.+|..+..|-.+
T Consensus 436 ~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIA 450 (506)
T ss_pred eeEEEcCCCCeEEee
Confidence 888899777665544
No 137
>KOG0285|consensus
Probab=93.54 E-value=4.9 Score=39.16 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=83.0
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
++...++=+..+|+||. +..|.+...+++|...++... .....+..-....+|+||...+-.|| +-.+...|...
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEE-EecCCCeeEEE
Confidence 33445666789999986 778999989999999999875 22333334567899999998777776 45567889999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
||.-.....-.-..+...+++++.|.-+.|+ |. +....+...+|-
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~-grDst~RvWDiR 265 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TG-GRDSTIRVWDIR 265 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEE-ec-CCcceEEEeeec
Confidence 9865433222224577889999999877775 33 333444444554
No 138
>PTZ00420 coronin; Provisional
Probab=93.49 E-value=12 Score=39.55 Aligned_cols=163 Identities=7% Similarity=-0.003 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
.....+..++|++.+..++.+...++.|..+++.... ....+ .....+..+++++.+ .+..+....+.|.+.|+.
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i--~~~~~V~SlswspdG-~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI--NMPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE--ecCCcEEEEEECCCC-CEEEEEecCCEEEEEECC
Confidence 3456788999999888888887778999999998642 11122 223457788888754 455555567889999998
Q ss_pred CCceEEEEecCCCCceeEE-----EeCCCCeEEEEeeCCC--CeEEEEecCCCCcceEEEEecCCcCceeE--EEecccc
Q psy13629 206 GKKRKVLYWEDIDQPRAIA-----LVPQDSIMFWTDWGEV--PKIERGAMNGDPRHRKVIVDSTIFWPNGI--AIDFNNR 276 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~ia-----vdp~~g~LYwtd~~~~--~~I~~~~~dG~~~~~~~lv~~~~~~P~gl--alD~~~~ 276 (395)
......-+..........+ +.+..++|.-+-.... ..|...++.........+... ..+..| ..|...+
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--NASAPLIPHYDESTG 275 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--CCccceEEeeeCCCC
Confidence 7554332211111111112 2255556655443321 357777766311212221111 123333 3566678
Q ss_pred EEEEeccceeeeeeecccc
Q psy13629 277 LLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG 295 (395)
.+|.+-.+++.|...++..
T Consensus 276 ~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEECCCeEEEEEccC
Confidence 8888877788887777643
No 139
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=1.7 Score=39.45 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEe------------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW------------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~------------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
+.|+.|.||..-+.+.+|.|.+++......-+. ...+-++|||.+|..+++|.|- -.-+.++-+.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG-K~wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG-KLWPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec-CcCceeEEEEec
Confidence 357889999777778899999998776655443 1245799999999999999985 224666666665
Q ss_pred C
Q psy13629 250 G 250 (395)
Q Consensus 250 G 250 (395)
+
T Consensus 260 ~ 260 (262)
T COG3823 260 E 260 (262)
T ss_pred C
Confidence 4
No 140
>KOG1407|consensus
Probab=93.38 E-value=4 Score=38.19 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=100.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-CCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-~~~p~glAVD~~~~ 187 (395)
.|++.+... .+.+..+...+.-.-+.|.+.++.+.+.+ .++.|.-++.... +...... ....+-++-. ..+
T Consensus 88 ~ir~wd~r~-~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~-----~~~~~~~~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 88 TIRIWDIRS-GKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTY-----KIVNEEQFKFEVNEISWN-NSN 159 (313)
T ss_pred eEEEEEecc-CcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEeccc-----ceeehhcccceeeeeeec-CCC
Confidence 778887766 66666667777777789999999888877 5566666655543 1111111 2234455555 678
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
++||...+++.|.....-.-....-+...-.+...|.+||.++++-.- +....+...+.+--. =.+.+ +.+.||-
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G--sADAlvSLWD~~ELi-C~R~i--sRldwpV 234 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG--SADALVSLWDVDELI-CERCI--SRLDWPV 234 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec--cccceeeccChhHhh-hheee--ccccCce
Confidence 899999899999998876544443343445677889999987765432 223445555554311 11122 2234664
Q ss_pred -eEEEeccccEEEEeccceeeeeeecc
Q psy13629 268 -GIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 268 -glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
-|.+.++++.| =+-+.++-|-.++.
T Consensus 235 RTlSFS~dg~~l-ASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 235 RTLSFSHDGRML-ASASEDHFIDIAEV 260 (313)
T ss_pred EEEEeccCccee-eccCccceEEeEec
Confidence 34555555433 22233455555553
No 141
>KOG0285|consensus
Probab=93.06 E-value=9.4 Score=37.29 Aligned_cols=177 Identities=8% Similarity=0.044 Sum_probs=110.0
Q ss_pred EEEEEeeCCCCCccEEecC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
..|++.|+.. +.....++ ......|++++...-.||... .++.|..+++..+ ....-....+.....|++.+.-
T Consensus 173 rtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~n---kvIR~YhGHlS~V~~L~lhPTl 247 (460)
T KOG0285|consen 173 RTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYN---KVIRHYHGHLSGVYCLDLHPTL 247 (460)
T ss_pred ceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhh---hhHHHhccccceeEEEeccccc
Confidence 3788999977 45444444 667789999999998888665 7889999999875 2222234467788899998865
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+.| +|-.....|.+-|+..+.....+...-.-...+...|.+..+|-.. ....|...++.-. ....++.. +-...
T Consensus 248 dvl-~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S--~D~tvrlWDl~ag-kt~~tlt~-hkksv 322 (460)
T KOG0285|consen 248 DVL-VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS--HDSTVRLWDLRAG-KTMITLTH-HKKSV 322 (460)
T ss_pred eeE-EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec--CCceEEEeeeccC-ceeEeeec-cccee
Confidence 555 5777788999999988877666533333445566666666665332 1334555555321 12222222 22345
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
..|++.+.+ .+ ++.+..+.|.+-++--.
T Consensus 323 ral~lhP~e-~~-fASas~dnik~w~~p~g 350 (460)
T KOG0285|consen 323 RALCLHPKE-NL-FASASPDNIKQWKLPEG 350 (460)
T ss_pred eEEecCCch-hh-hhccCCccceeccCCcc
Confidence 566666443 33 44455566766664333
No 142
>KOG0318|consensus
Probab=93.01 E-value=12 Score=38.31 Aligned_cols=189 Identities=13% Similarity=0.022 Sum_probs=113.5
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCCCe
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~~~ 188 (395)
|-.++.+.......+....+.+.+|+..+++..||=.+ .++.|...+.... ....+. ...-+...+|+.+. .+.
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g---~~~~~~g~~h~nqI~~~~~~~-~~~ 376 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSG---TSDRLAGKGHTNQIKGMAASE-SGE 376 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCc---cccccccccccceEEEEeecC-CCc
Confidence 34444443233445556788899999999988777444 7888888877643 112222 22335678888864 466
Q ss_pred EEEEeCCCCeEEEEECCCCceE--EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe-cCCCCcceEEEEecCCcC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRK--VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA-MNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~--~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~-~dG~~~~~~~lv~~~~~~ 265 (395)
|| +-...+++.+.++.+.... ..+ ....+|.++|+.+.++.+-++... .|.... ..+ .....-...
T Consensus 377 ~~-t~g~Dd~l~~~~~~~~~~t~~~~~-~lg~QP~~lav~~d~~~avv~~~~---~iv~l~~~~~------~~~~~~~y~ 445 (603)
T KOG0318|consen 377 LF-TIGWDDTLRVISLKDNGYTKSEVV-KLGSQPKGLAVLSDGGTAVVACIS---DIVLLQDQTK------VSSIPIGYE 445 (603)
T ss_pred EE-EEecCCeEEEEecccCccccccee-ecCCCceeEEEcCCCCEEEEEecC---cEEEEecCCc------ceeeccccc
Confidence 65 5556788999988654433 222 557899999999988888877633 233222 222 111112236
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccceeee-----eeecee-eeeeeeccC
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV-----TSLGHI-NLELYCNVF 315 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~-----t~~g~~-~i~Lf~d~a 315 (395)
|.++|+.+.+..+-+. ....+|....+.|....+ ...+.+ .++.-+|-+
T Consensus 446 ~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred cceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 8899999777655444 334557777777766443 223334 555554444
No 143
>KOG0318|consensus
Probab=92.87 E-value=12 Score=38.19 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=92.7
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
...+.+++|+|.|++.++.=+ ..+.++...+....+ ...++....-..-.-+-+=|.+++|- +-+..+.|.-++++
T Consensus 233 aHkGsIfalsWsPDs~~~~T~-SaDkt~KIWdVs~~s--lv~t~~~~~~v~dqqvG~lWqkd~lI-tVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTV-SADKTIKIWDVSTNS--LVSTWPMGSTVEDQQVGCLWQKDHLI-TVSLSGTINYLNPS 308 (603)
T ss_pred CccccEEEEEECCCCceEEEe-cCCceEEEEEeeccc--eEEEeecCCchhceEEEEEEeCCeEE-EEEcCcEEEEeccc
Confidence 457789999999998876544 355666666655432 22333332221111222334444443 22334566666655
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
......++........++++.|.+.+||=.+. ...|...+... ...-+..-..+-.+..+|+.+ ..+.|| +-.-+
T Consensus 309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy--DG~I~~W~~~~-g~~~~~~g~~h~nqI~~~~~~-~~~~~~-t~g~D 383 (603)
T KOG0318|consen 309 DPSVLKVISGHNKSITALTVSPDGKTIYSGSY--DGHINSWDSGS-GTSDRLAGKGHTNQIKGMAAS-ESGELF-TIGWD 383 (603)
T ss_pred CCChhheecccccceeEEEEcCCCCEEEeecc--CceEEEEecCC-ccccccccccccceEEEEeec-CCCcEE-EEecC
Confidence 44444455466778899999999999986652 34555555432 133333324455578888887 324454 44446
Q ss_pred eeeeeeccccce
Q psy13629 286 TFIEVMDYDGYV 297 (395)
Q Consensus 286 ~~I~~~~~dG~~ 297 (395)
+++.++++.+..
T Consensus 384 d~l~~~~~~~~~ 395 (603)
T KOG0318|consen 384 DTLRVISLKDNG 395 (603)
T ss_pred CeEEEEecccCc
Confidence 778887764443
No 144
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.58 E-value=1.7 Score=45.30 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCC-------------------CeEEEEEccCCCC----CceEEEEe-----------
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGT-------------------EMISCCTFDGNNV----GSKHNVIT----------- 171 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~-------------------~~I~~~~~dg~~~----~~~~~i~~----------- 171 (395)
..+.++.++.+++.++.||++-.+. +.|+++..++... ...+.++.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4578899999999999999985433 3799988776411 01122222
Q ss_pred ------CCCCCcceEEEecCCCeEEEEe-CCCCeE--EE--------------------EECCCCceE-EEEecCCCCce
Q psy13629 172 ------NGLITPDGLAIDWLTEKLYWTD-SETNKL--EV--------------------SSLDGKKRK-VLYWEDIDQPR 221 (395)
Q Consensus 172 ------~~~~~p~glAVD~~~~~LYwtd-~~~~~I--~v--------------------~~ldg~~~~-~l~~~~~~~P~ 221 (395)
..+.+|.+|++|+. ++|+++. ...... .- .+......+ .+......+..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPD-GNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCC-CCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 23679999999985 5566554 333221 11 111111122 22223456778
Q ss_pred eEEEeCCCCeEEEEe
Q psy13629 222 AIALVPQDSIMFWTD 236 (395)
Q Consensus 222 ~iavdp~~g~LYwtd 236 (395)
|++++|+.+.||+.-
T Consensus 506 G~~fspDg~tlFvni 520 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNI 520 (524)
T ss_pred cceECCCCCEEEEEE
Confidence 888888888888753
No 145
>KOG0315|consensus
Probab=92.57 E-value=8.9 Score=35.73 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=111.3
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
|.||-.....+.=...+...-.+.+.|...++++.|-.. ....|..++++.++- .....+...-++...+.+...++
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNP-NPVATFEGHTKNVTAVGFQCDGR 96 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc--cCCeeEEEEccCCCC-CceeEEeccCCceEEEEEeecCe
Confidence 677776655422234445566778999999888776543 456788888876531 11222233336788888887666
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
-+| |.++.+.+.+-++....+...+. ...-.+.++++|..+.|+..|.. ..|...++-...-.+ .++-+..-...
T Consensus 97 WMy-TgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqs--g~irvWDl~~~~c~~-~liPe~~~~i~ 171 (311)
T KOG0315|consen 97 WMY-TGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQS--GNIRVWDLGENSCTH-ELIPEDDTSIQ 171 (311)
T ss_pred EEE-ecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCC--CcEEEEEccCCcccc-ccCCCCCccee
Confidence 665 88889999999988755555552 23556899999999999999954 445555554321333 34444444567
Q ss_pred eEEEeccccEEEEeccceeeeeeecc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+++++++..|-=++. .++.++=++
T Consensus 172 sl~v~~dgsml~a~nn-kG~cyvW~l 196 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANN-KGNCYVWRL 196 (311)
T ss_pred eEEEcCCCcEEEEecC-CccEEEEEc
Confidence 7888876665544432 344444443
No 146
>KOG0263|consensus
Probab=92.43 E-value=9.2 Score=40.64 Aligned_cols=173 Identities=10% Similarity=0.014 Sum_probs=108.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+|..+++.....+....+..-.--+.|.|.+ .|++..+ +++-..+..|-. ....+....+.....+++.| +.
T Consensus 474 svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~---~PlRifaghlsDV~cv~FHP-Ns 547 (707)
T KOG0263|consen 474 SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHN---KPLRIFAGHLSDVDCVSFHP-NS 547 (707)
T ss_pred ceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccC---CchhhhcccccccceEEECC-cc
Confidence 67777777644444444444434446788764 5555444 343333444443 34566777788888899998 44
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+.-.|.+...++..-+.....+..++...-....+++++|.+.+|=-. ++...|...++.+ .........+-.-.+
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg--~ed~~I~iWDl~~--~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG--DEDGLIKIWDLAN--GSLVKQLKGHTGTIY 623 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec--ccCCcEEEEEcCC--CcchhhhhcccCcee
Confidence 444566667788888877777777775666677899999977666322 3567788888876 222222223344567
Q ss_pred eEEEeccccEEEEeccceeeeeeec
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.|++.. ++.+.++++.++.|..=|
T Consensus 624 SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 624 SLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEEec-CCCEEEecCCCCeEEEEE
Confidence 788874 455778887777765443
No 147
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.17 E-value=4.6 Score=38.78 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC-----CCceEEEEe-c------CCCCceeEEEeCCCCe----
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-----GKKRKVLYW-E------DIDQPRAIALVPQDSI---- 231 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-----g~~~~~l~~-~------~~~~P~~iavdp~~g~---- 231 (395)
..+...+..|.||++.+ ++.++++|..++....++.+ |.....++. . ....|.|++++...++
T Consensus 16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 34556788999999998 67888899999999999988 433322222 1 2357999999865543
Q ss_pred ---------EEEEeeCCCCeEEEEecCCCCc---ceEEEEecC--CcCceeEEEecc--ccEEEEeccceeeeeeeccc
Q psy13629 232 ---------MFWTDWGEVPKIERGAMNGDPR---HRKVIVDST--IFWPNGIAIDFN--NRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 232 ---------LYwtd~~~~~~I~~~~~dG~~~---~~~~lv~~~--~~~P~glalD~~--~~rLYwaD~~~~~I~~~~~d 294 (395)
||.|+ ...|.-.+..-... ...+.++.. ..-=.||+|-.. +.+||-+|=..++|.+.+-.
T Consensus 95 ~g~~~~a~Fif~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 95 EGITGPSRFLFVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCcccceeEEEEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 66555 23343333221112 122334322 112357887744 57999999999999887533
No 148
>KOG0272|consensus
Probab=92.11 E-value=4.4 Score=40.21 Aligned_cols=176 Identities=9% Similarity=-0.003 Sum_probs=107.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-CCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-~~~p~glAVD~~~~ 187 (395)
.++..+++++.....+.....+...++|+|.++.|-=+ .-+.+=.-.++... .+.+...+ -....+||..+ .|
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta-sfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~-DG 315 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA-SFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQP-DG 315 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec-ccccchhhcccccc----hhhHhhcccccccceeEecC-CC
Confidence 45666666644455556667788899999988766422 22332222333321 12222332 25678899987 67
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
.|-.|-+....=.+-|+....+..++..-.....+++++| +|+.--|-.+ ...+|....+.- . .-.+-.+....
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~--~--ly~ipAH~nlV 390 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRS--E--LYTIPAHSNLV 390 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccc--c--ceecccccchh
Confidence 7766665554445668888888777777789999999998 7788777633 234555544433 2 11222233356
Q ss_pred eeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..+..++..++..++.+.++++..-...+
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCC
Confidence 67777777788888877777765444443
No 149
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.83 E-value=14 Score=36.22 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred ccCCCCcee--------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE
Q psy13629 99 KLQPDGAYL--------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 170 (395)
Q Consensus 99 ~~~~~~~~~--------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~ 170 (395)
..+.|+.+. ..+.++|+.. .++...++..+ ...+ |-..++. |.+-.+++++..+.+|... +.....
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~-~kvv~ei~~PG-C~~i-yP~~~~~-F~~lC~DGsl~~v~Ld~~G--k~~~~~ 174 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAA-KKVVGEIDTPG-CWLI-YPSGNRG-FSMLCGDGSLLTVTLDADG--KEAQKS 174 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTT-TEEEEEEEGTS-EEEE-EEEETTE-EEEEETTSCEEEEEETSTS--SEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCC-CceeeeecCCC-EEEE-EecCCCc-eEEEecCCceEEEEECCCC--CEeEee
Confidence 566666664 4889999987 45443333322 3333 4333444 5566789999999998432 111111
Q ss_pred eCCC---CCc--ceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCC---------CCce---eEEEeCCCCeEE
Q psy13629 171 TNGL---ITP--DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI---------DQPR---AIALVPQDSIMF 233 (395)
Q Consensus 171 ~~~~---~~p--~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~---------~~P~---~iavdp~~g~LY 233 (395)
..-+ ..| +.=+++-.++.+||.. ..+.|+.+++.|...+..-.-.+ =.|- -+|+++..++||
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1111 111 1223445677899976 46899999999987554322111 1132 389999999999
Q ss_pred EEe-----eC-C--CCeEEEEecCCCCcceEEEEecCCc-CceeEEEecccc-EEEEeccceeeeeeecc-cccee
Q psy13629 234 WTD-----WG-E--VPKIERGAMNGDPRHRKVIVDSTIF-WPNGIAIDFNNR-LLYWIDGRLTFIEVMDY-DGYVR 298 (395)
Q Consensus 234 wtd-----~~-~--~~~I~~~~~dG~~~~~~~lv~~~~~-~P~glalD~~~~-rLYwaD~~~~~I~~~~~-dG~~~ 298 (395)
+-= |. + ...|+.+++.. ..| +..-.+. ...+|++..+++ +||-++.....+...|. .|...
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t--~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKT--HKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTT--TEE--EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEecCCCCCCccCCceEEEEEECCC--CeE--EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 863 21 1 24577777765 222 2222221 244788876555 77877777777777774 44333
No 150
>KOG0272|consensus
Probab=91.80 E-value=3.2 Score=41.12 Aligned_cols=119 Identities=8% Similarity=-0.043 Sum_probs=83.5
Q ss_pred EEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEE
Q psy13629 111 RIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LY 190 (395)
|+.|+........+....+.+.+++|+|++. ...|..+++++...++.+.+ ..-++....+-...+-+++..|+.-
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~---~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS---ELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc---cceecccccchhhheEecccCCeEE
Confidence 5667766555677777899999999998765 55677789999999999863 2223333445677888888788888
Q ss_pred EEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEE
Q psy13629 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF 233 (395)
Q Consensus 191 wtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LY 233 (395)
.|-+..+.+..-.-.+-.+...+..--....++.+.+++..+-
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 8888888888777665444433334455666777777665554
No 151
>PTZ00420 coronin; Provisional
Probab=91.74 E-value=20 Score=37.87 Aligned_cols=125 Identities=4% Similarity=-0.066 Sum_probs=82.8
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-C----ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-G----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 197 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~----~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~ 197 (395)
.+......+..++|++..+.+..+...++.|..+++..... . .....+.........++.++.+..+..+-...+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34445667899999987666777777889999998864211 0 011122233356788999987777777777789
Q ss_pred eEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 198 KLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 198 ~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.|.+.|+........+ ........++++|.+..| .+. +....|...++..
T Consensus 149 tIrIWDl~tg~~~~~i-~~~~~V~SlswspdG~lL-at~-s~D~~IrIwD~Rs 198 (568)
T PTZ00420 149 FVNIWDIENEKRAFQI-NMPKKLSSLKWNIKGNLL-SGT-CVGKHMHIIDPRK 198 (568)
T ss_pred eEEEEECCCCcEEEEE-ecCCcEEEEEECCCCCEE-EEE-ecCCEEEEEECCC
Confidence 9999999866544333 233567899999876655 433 2245677777764
No 152
>KOG0266|consensus
Probab=91.43 E-value=18 Score=36.90 Aligned_cols=162 Identities=8% Similarity=0.032 Sum_probs=104.5
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc-cCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~-dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
......+..++|.+.+. ...+...+.+|...+. ++. ....++........++++.+.+ ++..+-...+.|.+.+
T Consensus 200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~---~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG---RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC---eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEe
Confidence 44566788999999877 5556667888888888 332 2233444555677999999977 7888888899999999
Q ss_pred CCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce---EEEEecCCc-CceeEEEeccccEEE
Q psy13629 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR---KVIVDSTIF-WPNGIAIDFNNRLLY 279 (395)
Q Consensus 204 ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~---~~lv~~~~~-~P~glalD~~~~rLY 279 (395)
+.+..+...+...-....++++.++...|. +- .....|...++.+ ... +++...... .-.-+..++.++.|+
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~-s~-s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLV-SA-SYDGTIRVWDLET--GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEE-Ec-CCCccEEEEECCC--CceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 998666666656667788999998666554 44 3356777788876 331 233322211 114455665555444
Q ss_pred Eeccceeeeeeeccccc
Q psy13629 280 WIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~ 296 (395)
.+ ..++.+..-++...
T Consensus 351 ~~-~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 351 SA-SLDRTLKLWDLRSG 366 (456)
T ss_pred Ee-cCCCeEEEEEccCC
Confidence 33 33345555555533
No 153
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.14 E-value=13 Score=34.78 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC------------CCcceEEEecCCC--eEEEEeCCCCeEEEEECC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL------------ITPDGLAIDWLTE--KLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~------------~~p~glAVD~~~~--~LYwtd~~~~~I~v~~ld 205 (395)
++.||+--.+.+.|.|+++..... ......++. ..--++|||. +| -||-+....+.|.+..+|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v--~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld 154 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSV--VARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLD 154 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcE--EEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeC
Confidence 467898888899999999997631 112222211 2235789995 55 356666666789999888
Q ss_pred CCceEEEE--ecCCCC---ceeEEEeCCCCeEEEEeeCCC--CeE-EEEecCCC-CcceEEEEecCCcCceeEEEecccc
Q psy13629 206 GKKRKVLY--WEDIDQ---PRAIALVPQDSIMFWTDWGEV--PKI-ERGAMNGD-PRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 206 g~~~~~l~--~~~~~~---P~~iavdp~~g~LYwtd~~~~--~~I-~~~~~dG~-~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
-....+.- .....+ -++..+. |.||.++.... .+| +..|+... .....+.+.........|..++.++
T Consensus 155 ~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk 231 (250)
T PF02191_consen 155 PETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDK 231 (250)
T ss_pred cccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCC
Confidence 76444322 122322 2455554 79999996521 233 23333321 0111222223344566677888999
Q ss_pred EEEEeccceeeeeee
Q psy13629 277 LLYWIDGRLTFIEVM 291 (395)
Q Consensus 277 rLYwaD~~~~~I~~~ 291 (395)
+||.=|.+.-.+..+
T Consensus 232 ~LY~wd~G~~v~Y~v 246 (250)
T PF02191_consen 232 KLYAWDNGYQVTYDV 246 (250)
T ss_pred eEEEEECCeEEEEEE
Confidence 999888654444433
No 154
>KOG4378|consensus
Probab=91.05 E-value=9.5 Score=38.82 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=88.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.|+..+.-...+......+.+++|.+...+|--.. ..+-|..-.+.... ...++........+-|.+.+-.+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCc--cccceecCCCCeEEEeecccccce
Confidence 556677764222344556667889999988776654332 23344443333220 112222222334456677777888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC-CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~-~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
|-.+-+.++.+.+.|..|....--..+. -.-.+||+++|.+-.|+++- |...+|...+...
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD~~s 240 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYDIRS 240 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-cccceEEEeeccc
Confidence 8888888999999999987664333233 33358999999999999987 7667888887764
No 155
>smart00284 OLF Olfactomedin-like domains.
Probab=91.03 E-value=14 Score=34.75 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-C----------CCCcceEEEecCCC--eEEEEeCCCCeEEEEECCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-G----------LITPDGLAIDWLTE--KLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~----------~~~p~glAVD~~~~--~LYwtd~~~~~I~v~~ldg 206 (395)
++.||+.-..+..|.++++....... +..+.. . ..+--++|||. +| -||-|....+.|.++.||-
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~-~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~ivvSkLnp 160 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQK-EPLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGKIVISKLNP 160 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEE-EEecCccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCCEEEEeeCc
Confidence 47799988788899999999753111 122211 1 12235789996 55 4576777778999999987
Q ss_pred CceEEEEe--cCCC---CceeEEEeCCCCeEEEEeeC--CCCeE-EEEecCCCCcce-EEEEecCCcCceeEEEeccccE
Q psy13629 207 KKRKVLYW--EDID---QPRAIALVPQDSIMFWTDWG--EVPKI-ERGAMNGDPRHR-KVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 207 ~~~~~l~~--~~~~---~P~~iavdp~~g~LYwtd~~--~~~~I-~~~~~dG~~~~~-~~lv~~~~~~P~glalD~~~~r 277 (395)
....+.-. .... .-++..+. |.||.++.. ...+| +..+..+..... .+.+....+.-..|...+.+++
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~ 237 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRK 237 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCe
Confidence 65544321 2222 23456664 799999842 23343 334444311111 1122222223334666778899
Q ss_pred EEEecccee
Q psy13629 278 LYWIDGRLT 286 (395)
Q Consensus 278 LYwaD~~~~ 286 (395)
||.=|-+.-
T Consensus 238 LY~wdng~~ 246 (255)
T smart00284 238 LYAWNNGHL 246 (255)
T ss_pred EEEEeCCeE
Confidence 998875433
No 156
>KOG0641|consensus
Probab=90.94 E-value=13 Score=34.16 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=85.5
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe----CCC--CCcceEEEecCCCeEEEEe
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT----NGL--ITPDGLAIDWLTEKLYWTD 193 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~----~~~--~~p~glAVD~~~~~LYwtd 193 (395)
....+....+++.+| |.| ++.+|.+...+++|.-.++.-.. ...++-. .++ .....++||+ .|+|..+.
T Consensus 175 ~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg 249 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASG 249 (350)
T ss_pred cceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-Ccceeeec
Confidence 344455556667666 555 35678888778888877776431 1111111 122 4577899998 56666787
Q ss_pred CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 194 SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 194 ~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.....-..+++.|.....-+-......+.+-++|..-+|.-. +...+|...++.|.+
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~--syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC--SYDMKIKLTDLQGDL 306 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe--cccceEEEeecccch
Confidence 778888999999987766665666778899999877666533 345789999998843
No 157
>PTZ00395 Sec24-related protein; Provisional
Probab=90.88 E-value=0.15 Score=57.02 Aligned_cols=64 Identities=31% Similarity=0.471 Sum_probs=49.8
Q ss_pred cccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCC----------CCCCccCcccccccCCCCceeE
Q psy13629 45 RPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNS----------DEMPVQERCSFEKLQPDGAYLL 108 (395)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~----------~~~~~~~~C~~~~~~~~~~~~~ 108 (395)
+.+++.|+|.+.++.+++|++..++.++||.|++++.++... ...|...+|+.+....+|+|+-
T Consensus 1376 Rt~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLL 1449 (1560)
T PTZ00395 1376 KKEILHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLL 1449 (1560)
T ss_pred cCCCCccHHHHHHHHHhCCCHHHHHhhhcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEE
Confidence 457889999999999999999999999999999998763221 1235566666677777777763
No 158
>KOG0294|consensus
Probab=90.75 E-value=16 Score=35.11 Aligned_cols=134 Identities=12% Similarity=0.074 Sum_probs=88.9
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCC--EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKS--MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~--~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|+++|+....+...+....+.+.++-|++.-. +|. +...++.|...+.+.-. ....+...-...++|+|.|
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~---~~~slK~H~~~Vt~lsiHP- 137 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWE---LLKSLKAHKGQVTDLSIHP- 137 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeE---EeeeecccccccceeEecC-
Confidence 4899999988666777788899999999987652 232 34457778777776531 1112222334599999998
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.++|-.+-++.+.+..-||-.....-+. ..-..+.-+-.+|.+.+.++.- ..+|....++-
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~ 198 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAFVL-NLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDN 198 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccceee-ccCCcceeeEEcCCCCEEEEEe---ccEEEEEeccc
Confidence 7888888877888877776443333222 3445566677888777676654 45666666654
No 159
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.24 E-value=1.9 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=29.5
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+.+++||.++...+.|..++.... .....+.. ...|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEEC-CCCCceEEeC
Confidence 357889999999999999888653 22222222 4689998874
No 160
>KOG1446|consensus
Probab=90.16 E-value=18 Score=34.63 Aligned_cols=156 Identities=9% Similarity=0.062 Sum_probs=98.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcce-EEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG-LAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~g-lAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
....+.+|+|+..+..+-.+. .++.|+.++..... ...++....- .+.- .=.+..+..||=+...+..|.-.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~--~~~ti~skky-G~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSS-EDDSLRLYDSLSGK--QVKTINSKKY-GVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEec-CCCeEEEEEcCCCc--eeeEeecccc-cccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 456789999999888777654 67788888876442 2233333221 2222 22344566677777778899999998
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
.......+..--...++|.+.|.+ -.|.+- +....|...++.- .+.+-+... ..+.-.|+| .+|.++-+-.+.
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~-S~D~tvrLWDlR~--~~cqg~l~~--~~~pi~AfD-p~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSS-SLDKTVRLWDLRV--KKCQGLLNL--SGRPIAAFD-PEGLIFALANGS 161 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCC-CeEEec-ccCCeEEeeEecC--CCCceEEec--CCCcceeEC-CCCcEEEEecCC
Confidence 887777776677889999999977 677776 3244566677764 344434332 234456788 445455444444
Q ss_pred eeeeeecc
Q psy13629 286 TFIEVMDY 293 (395)
Q Consensus 286 ~~I~~~~~ 293 (395)
+.|.-.|+
T Consensus 162 ~~IkLyD~ 169 (311)
T KOG1446|consen 162 ELIKLYDL 169 (311)
T ss_pred CeEEEEEe
Confidence 46654443
No 161
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.83 E-value=20 Score=36.42 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.+++. .....+..-.+.-..-+|.+++++|.++-..++ .|+.+++++.. ... +.+....-..=.+.+.+
T Consensus 219 ~i~~~~l~~-g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~-Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 219 RIYYLDLNT-GKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPR-LTNGFGINTSPSWSPDG 293 (425)
T ss_pred eEEEEeccC-CccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---cee-cccCCccccCccCCCCC
Confidence 466667766 333444445555667789999999998876554 68888888863 222 22221111133445667
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMN 249 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~d 249 (395)
.+|||+.. +...|++++++|+..+.+. ........-..+|+..+|-+.... ....|+..+..
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 88888763 3558999999999886655 333333355577766665554421 12335555553
No 162
>KOG0270|consensus
Probab=89.63 E-value=18 Score=36.25 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=100.9
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC------
Q psy13629 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD------ 205 (395)
Q Consensus 132 ~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld------ 205 (395)
.+|++....+.|..|...+++|...+++.. +....+.........++..+.....-.+-+..+++...|..
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 467777788889999989999999999975 33444444556777888888777777777777777777765
Q ss_pred ------CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 206 ------GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 206 ------g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
|...++.. ....++.+.+....|.+||.|.+.. | ....-+..+-....||.+......+.
T Consensus 324 ~~wk~~g~VEkv~w--~~~se~~f~~~tddG~v~~~D~R~~---------~---~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAW--DPHSENSFFVSTDDGTVYYFDIRNP---------G---KPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred ceEEeccceEEEEe--cCCCceeEEEecCCceEEeeecCCC---------C---CceeEEEeccCCcceEEecCCCCcce
Confidence 22222222 4567788888888999999995522 1 11111112223466777776666777
Q ss_pred Eeccceeeeeeeccccceee
Q psy13629 280 WIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~~ 299 (395)
.+.+....|..-++++.+..
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eeccccceEEEEeecCCCCc
Confidence 77777777777676666553
No 163
>KOG0646|consensus
Probab=89.39 E-value=26 Score=35.35 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=105.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc------CCCCCceEEEEeCCCCCcceEEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD------GNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d------g~~~~~~~~i~~~~~~~p~glAV 182 (395)
.|....+..+.-...+...-..+.-|-|..+ +..++|...++.|..+.+- .+..........+.--...+|-+
T Consensus 104 ~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~i 182 (476)
T KOG0646|consen 104 NLYLWELSSGILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQI 182 (476)
T ss_pred cEEEEEeccccHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEe
Confidence 3444445442333344556677888888855 4566677788888776542 11000111122222234566666
Q ss_pred ecC--CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC--------
Q psy13629 183 DWL--TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP-------- 252 (395)
Q Consensus 183 D~~--~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~-------- 252 (395)
+.- +.+|| |-+....|.+.++.+.....-+ ..-..+.++++||.+..+|+-. +..+|+..++.+..
T Consensus 183 g~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt--~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 183 GSGGTNARLY-TASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGT--EEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred cCCCccceEE-EecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecC--CcceEEeeehhcCCcccccccc
Confidence 653 34666 6667788999998877544333 3356789999999999999854 35677777765421
Q ss_pred -------cceEEEEecCC-cCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 253 -------RHRKVIVDSTI-FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 253 -------~~~~~lv~~~~-~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+..+.++.... ....-|++..++. |..+-..+++|..-+....+.
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHH
Confidence 12222332221 2566788884444 444444556666655554443
No 164
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.29 E-value=4.6 Score=39.33 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=64.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCe------EEEEECCCC----ceEE------EEecC---C----CCceeEEEeCCC
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSETNK------LEVSSLDGK----KRKV------LYWED---I----DQPRAIALVPQD 229 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~~~~------I~v~~ldg~----~~~~------l~~~~---~----~~P~~iavdp~~ 229 (395)
.+..-.||++|...+ .||+=+..+. ++...++.. .... +.... + ..+.||++ +.+
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 345667899986344 4555444444 777666551 1111 11111 1 15669999 678
Q ss_pred CeEEEEeeCCC------CeEEEEecCCCCcceEEEEecC-------------CcCceeEEEeccccEEEEec
Q psy13629 230 SIMFWTDWGEV------PKIERGAMNGDPRHRKVIVDST-------------IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 230 g~LYwtd~~~~------~~I~~~~~dG~~~~~~~lv~~~-------------~~~P~glalD~~~~rLYwaD 282 (395)
|.+||++ ... ++|.+++.+|... +++-+-.. -...-|||+..++++||.+-
T Consensus 96 g~~~is~-E~~~~~~~~p~I~~~~~~G~~~-~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 96 GSFWISS-EGGRTGGIPPRIRRFDLDGRVI-RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred CCEEEEe-CCccCCCCCCEEEEECCCCccc-ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8999999 446 9999999998432 22211111 12345899998888888874
No 165
>KOG0268|consensus
Probab=88.84 E-value=13 Score=36.30 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=103.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.++........+....+-+.||.++. +..+++.| +++|.+..++|. ...++... ..-.||.-.| .++
T Consensus 90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~~---p~~tilg~--s~~~gIdh~~-~~~ 160 (433)
T KOG0268|consen 90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDGP---PLHTILGK--SVYLGIDHHR-KNS 160 (433)
T ss_pred eEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccCC---cceeeecc--cccccccccc-ccc
Confidence 678888866444455566677889999987 66666554 677888888874 22333322 2334454444 455
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+|.|-++ .|..-|..-.....-+.-+......+-++|..-.+.-+. +....|...++--..--.+++.... +|+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~ 234 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYDLRQASPLKKVILTMR---TNT 234 (433)
T ss_pred cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEecccCCccceeeeecc---ccc
Confidence 6655543 344444433333333323445556677777766665555 3455677777754323445555553 899
Q ss_pred EEEeccccEEEEeccceeeeeeeccccce
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
|...+ +...|++-..+..++..|..--.
T Consensus 235 IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 235 ICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred eecCc-cccceeeccccccceehhhhhhc
Confidence 99987 77888887777777666654433
No 166
>KOG1274|consensus
Probab=88.77 E-value=17 Score=39.57 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=91.9
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
.-..|.||+.+..|+..+ .++.|....-.... ...+++- .......++|.+. +.+.+-..++.|.++..+-...
T Consensus 15 G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~-e~P~ti~-~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCG-SDGDIRKWKTNSDE-EEPETID-ISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred ceEEEEEcCCCCEEEEec-CCCceEEeecCCcc-cCCchhh-ccCceeEEEeecc---cceEEeeccceEEEeeCCCCCc
Confidence 357789999999888877 56666665544321 1222222 1334566777653 3566778899999999988777
Q ss_pred EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeee
Q psy13629 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIE 289 (395)
Q Consensus 210 ~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~ 289 (395)
..++..---..+.++++-.+ .+-..- ++..-|...+++. ...+.....+-..--+|.+|+.+..|-++. .++.|.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g-~~iaag-sdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~ 163 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSG-KMIAAG-SDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQ 163 (933)
T ss_pred cceeeeeeccceEEEEecCC-cEEEee-cCceeEEEEeccc--cchheeecccCCceeeeeEcCCCCEEEEEe-cCceEE
Confidence 76774444456788888644 433332 3456677788766 333333334333445666665555444443 345555
Q ss_pred eeccc
Q psy13629 290 VMDYD 294 (395)
Q Consensus 290 ~~~~d 294 (395)
..+++
T Consensus 164 iw~~~ 168 (933)
T KOG1274|consen 164 IWDLQ 168 (933)
T ss_pred EEEcc
Confidence 55543
No 167
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=25 Score=33.73 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=93.1
Q ss_pred EEEEeeCCCCCccEEecC-CC-CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCC----cceEEE
Q psy13629 109 DIRIANLSRPLKPVTIIK-DL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT----PDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~-~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~----p~glAV 182 (395)
.++++|.....+.+++-. +. +-.+++ +-.++..|++|..++ ...+++.... ..++. ..... ...++|
T Consensus 107 GL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddg-fLivdvsdps---sP~la-grya~~~~d~~~v~I 179 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDG-FLIVDVSDPS---SPQLA-GRYALPGGDTHDVAI 179 (370)
T ss_pred ceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCc-EEEEECCCCC---Cceee-eeeccCCCCceeEEE
Confidence 667777766444444322 12 333444 445899999997544 4445554331 12222 22222 346777
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
. ++.-|.+... +-+...|......-+++..---.|..-.+.+...+.|.++..+ -+...+.+|. +..+++-.-+
T Consensus 180 S--Gn~AYvA~~d-~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~-ssp~~~gsye 253 (370)
T COG5276 180 S--GNYAYVAWRD-GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGP-SSPTVFGSYE 253 (370)
T ss_pred e--cCeEEEEEeC-CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCC-CCceEeeccc
Confidence 5 6778888754 3466667666655566643222334444555567888888553 3677777772 3333333335
Q ss_pred CcCceeE-EEeccccEEEEeccce
Q psy13629 263 IFWPNGI-AIDFNNRLLYWIDGRL 285 (395)
Q Consensus 263 ~~~P~gl-alD~~~~rLYwaD~~~ 285 (395)
-..|.++ ++-..+++.|++|...
T Consensus 254 t~~p~~~s~v~Vs~~~~Yvadga~ 277 (370)
T COG5276 254 TSNPVSISTVPVSGEYAYVADGAK 277 (370)
T ss_pred cCCcccccceecccceeeeecccc
Confidence 5567666 3445689999999643
No 168
>KOG0279|consensus
Probab=87.93 E-value=25 Score=33.35 Aligned_cols=169 Identities=10% Similarity=0.052 Sum_probs=115.0
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC--CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV--GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~--~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
...+.+++.-..+..++.+-..+..|....+...+. ......+...-...+++++.. .++..++-+..+.+..-|+.
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEec
Confidence 445677787777777888887888888888875421 112233333345688899886 67777888888999999999
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-CcCceeEEEecccc-EEEEecc
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNR-LLYWIDG 283 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~-rLYwaD~ 283 (395)
+...+..+...-....++++++++..+ +|- .....|...+.-| .-.-++.... -.|.+-+.+.+.+. -+.+.-+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qi-vSG-SrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQI-VSG-SRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCcee-ecC-CCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 876665554667778999999988766 443 2345577777666 3333343333 56888888887764 4444455
Q ss_pred ceeeeeeeccccceeeee
Q psy13629 284 RLTFIEVMDYDGYVRLVT 301 (395)
Q Consensus 284 ~~~~I~~~~~dG~~~~~t 301 (395)
.+..|..=|+++-+...+
T Consensus 170 ~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred CCceEEEEccCCcchhhc
Confidence 567777778887766653
No 169
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.69 E-value=14 Score=36.22 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=62.0
Q ss_pred EEEEE-cCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCc-ceEEEecCCCeEEEEeCC----CCeEEEEEC
Q psy13629 133 AIDYY-YKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITP-DGLAIDWLTEKLYWTDSE----TNKLEVSSL 204 (395)
Q Consensus 133 gl~~d-~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p-~glAVD~~~~~LYwtd~~----~~~I~v~~l 204 (395)
...+- ..++.++|.-..+ ..|+.++.++. ... -+..+--.. .-+++|..++.||++-.. ...+++.++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~---~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG---KPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS---EEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc---cee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 44444 4555555554454 47888888886 323 333333334 458899999999999854 568999999
Q ss_pred C-CCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 205 D-GKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 205 d-g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
+ +...+.|......+ ..+.++|..+++-.+-
T Consensus 315 ~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTT-EEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCc-eEEEECCCCCEEEEEE
Confidence 9 76665554222333 6899999877665544
No 170
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.64 E-value=3.9 Score=39.43 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=47.1
Q ss_pred EEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC-CCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 169 i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
++..++.-|++-- |-.++||++|...+.+.+++++ |+...+ . .--..|+||++. ++++|++-
T Consensus 197 vl~~GLsmPhSPR--WhdgrLwvldsgtGev~~vD~~~G~~e~V-a-~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 197 VVASGLSMPHSPR--WYQGKLWLLNSGRGELGYVDPQAGKFQPV-A-FLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEcCccCCcCCc--EeCCeEEEEECCCCEEEEEcCCCCcEEEE-E-ECCCCCccccee--CCEEEEEe
Confidence 4556666666654 6789999999999999999998 555444 3 445689999998 77777755
No 171
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.96 E-value=35 Score=34.03 Aligned_cols=158 Identities=14% Similarity=0.097 Sum_probs=79.5
Q ss_pred EEcCC-CEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE
Q psy13629 136 YYYKK-SMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 213 (395)
Q Consensus 136 ~d~~~-~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~ 213 (395)
|..++ +.||.++.. ...++.++++.. ....+........-|..+.+.++.||+... ..++.+.++++...+++.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~---~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATG---EITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccC---EEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEE
Confidence 34445 455555532 457889999875 444454443333446667788899877642 368999999998877665
Q ss_pred ec-CCCCceeEEEeCCCCeEEEEe------------eC---------CCCeEEEEecCCCCcceEEEEecCCcCceeEEE
Q psy13629 214 WE-DIDQPRAIALVPQDSIMFWTD------------WG---------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271 (395)
Q Consensus 214 ~~-~~~~P~~iavdp~~g~LYwtd------------~~---------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glal 271 (395)
.- ..-..++-.+....+.+++.. |. ...+|.++++.+ ...++++.+. .|-+-+-.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~-~wlgH~~f 195 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDT-DWLGHVQF 195 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES-S-EEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecC-ccccCccc
Confidence 42 222234444433344444322 11 126899999998 6677666654 23333334
Q ss_pred eccc-cEEEEec-----cceeeeeeeccccceeee
Q psy13629 272 DFNN-RLLYWID-----GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 272 D~~~-~rLYwaD-----~~~~~I~~~~~dG~~~~~ 300 (395)
.+.. ..|=++- .-..+|+.++.||++...
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence 4333 3344432 224688899999887654
No 172
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=85.87 E-value=25 Score=31.35 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=77.1
Q ss_pred CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC-CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCC
Q psy13629 151 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229 (395)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~-~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~ 229 (395)
..|++++.++. ....+-...-....+++-.+.+..+.++.. ...+|..+++++.....+- -...+.|..+|.+
T Consensus 39 ~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G 112 (194)
T PF08662_consen 39 FELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDG 112 (194)
T ss_pred EEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEECCCC
Confidence 35666655554 223333333334788888888888776653 3457888998755544432 3456789999998
Q ss_pred CeEEEEeeCC-CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 230 SIMFWTDWGE-VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 230 g~LYwtd~~~-~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
++|..+..+. ...|+..+.+. .+.+..........++.+++++.|..+.
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~----~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRK----KKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCC----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 8888876553 35677777763 3344444444567777887777666554
No 173
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.57 E-value=38 Score=33.16 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=91.9
Q ss_pred EEEEEeeCCCCCccEEec-----CCCCCeEEEEEEcCCCEEEE--EECCCC--eEEEEEccCCCCCceEEEEe----CCC
Q psy13629 108 LDIRIANLSRPLKPVTII-----KDLEEGAAIDYYYKKSMVCW--TDHGTE--MISCCTFDGNNVGSKHNVIT----NGL 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~-----~~~~~~~gl~~d~~~~~lyw--sd~~~~--~I~~~~~dg~~~~~~~~i~~----~~~ 174 (395)
-++.++++.+........ ....-...+.|...++.|++ .+...+ .+..++.... ..+.+.. ..+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg---~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG---ETRVVLEETSDGWV 234 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT---TCEEEEEEESSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC---ceeEEEEecCCcce
Confidence 466777887633222222 23334556677777774444 444444 3455555433 2222222 123
Q ss_pred CCcceEEEe-cCCCeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC---CCCeEEEEec
Q psy13629 175 ITPDGLAID-WLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG---EVPKIERGAM 248 (395)
Q Consensus 175 ~~p~glAVD-~~~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~---~~~~I~~~~~ 248 (395)
.......+- ..++.++|.-.. -.+|+.++.+|...+.|......--.-+.+|+.++.||++--. ....++++++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 334444442 345555555433 4589999999998775553333322458899999999999754 3568999999
Q ss_pred C-CCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 249 N-GDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 249 d-G~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
+ | ...+.+.... ..-...+++++++.+.
T Consensus 315 ~~~--~~~~~LT~~~-~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 315 DSG--GEPKCLTCED-GDHYSASFSPDGKYYV 343 (353)
T ss_dssp TET--TEEEESSTTS-STTEEEEE-TTSSEEE
T ss_pred CCC--CCeEeccCCC-CCceEEEECCCCCEEE
Confidence 9 6 4454444333 2114777776666443
No 174
>KOG2919|consensus
Probab=85.47 E-value=17 Score=35.19 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=102.1
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc--cCCCCCceEEEEeCC---CCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF--DGNNVGSKHNVITNG---LITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~--dg~~~~~~~~i~~~~---~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
++....+..|+|.+++.+||... .+.|..++. .|..-....++.... ..-...+|..+.+-+++-.-+...++
T Consensus 155 ~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 155 QDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred HHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccccee
Confidence 44566789999999999999755 456777666 343211111222211 12355678888777777777666777
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
..+.-++.....++.....-..-|...+...+||.-. ....+|...++-- .+..++.- +=.++-.++|||
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-Rk~dkIl~WDiR~---~~~pv~~L------~rhv~~TNQRI~ 302 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-RKDDKILCWDIRY---SRDPVYAL------ERHVGDTNQRIL 302 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-cCCCeEEEEeehh---ccchhhhh------hhhccCccceEE
Confidence 7777777766655544445566677788888888654 4578899998865 22222221 112233566776
Q ss_pred Ee-ccceeeeeeeccccceeee
Q psy13629 280 WI-DGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 280 wa-D~~~~~I~~~~~dG~~~~~ 300 (395)
+- |...+.+.+-+.+|..++.
T Consensus 303 FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred EecCCCCceeeccCCCccEEEE
Confidence 64 4555555566677777776
No 175
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.07 E-value=43 Score=33.35 Aligned_cols=186 Identities=11% Similarity=0.054 Sum_probs=103.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC----------CeEEEEEccCCCCCceEEEEeCCCCCc
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT----------EMISCCTFDGNNVGSKHNVITNGLITP 177 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~----------~~I~~~~~dg~~~~~~~~i~~~~~~~p 177 (395)
..++++|+..+........... ..++.|..++..+|++.... ..|++..+.... ....++......+
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~--~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ--SEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G--GG-EEEEC-TTCT
T ss_pred EEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh--HhCeeEEeecCCC
Confidence 3788899977322222222221 22389999988999997533 347777776542 2234555544444
Q ss_pred c---eEEEecCCCeEEEEe--CCC-CeEEEEECCCC-----ceEEEEecCCCCceeEEEeCCCCeEEE-EeeC-CCCeEE
Q psy13629 178 D---GLAIDWLTEKLYWTD--SET-NKLEVSSLDGK-----KRKVLYWEDIDQPRAIALVPQDSIMFW-TDWG-EVPKIE 244 (395)
Q Consensus 178 ~---glAVD~~~~~LYwtd--~~~-~~I~v~~ldg~-----~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~-~~~~I~ 244 (395)
. ++.+...++.|+++- ... ..++..+++.. ..+.+. .....-...+-. .++.+|+ |+.+ ...+|.
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDH-HGDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEE
T ss_pred cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEc-cCCEEEEeeCCCCCCcEEE
Confidence 4 777788778777654 233 57899998874 333333 333323222222 2666664 6644 568999
Q ss_pred EEecCCCCc-ceE-EEEecC-CcCceeEEEeccccEEEEec--cceeeeeeeccc-cceeee
Q psy13629 245 RGAMNGDPR-HRK-VIVDST-IFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYD-GYVRLV 300 (395)
Q Consensus 245 ~~~~dG~~~-~~~-~lv~~~-~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~d-G~~~~~ 300 (395)
+++++.... ... +++... -....++.+ .+++|++.. ....+|...+++ +.....
T Consensus 305 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred EecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 999987321 123 555443 123445554 477777774 445778888888 554444
No 176
>KOG0310|consensus
Probab=85.05 E-value=34 Score=34.66 Aligned_cols=181 Identities=8% Similarity=0.000 Sum_probs=106.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++++..+.+....+..--+...+++|-.+++.+- ..-.++.|..+++..... -..+.....-..-.-+.+..+.
T Consensus 49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Lla-aGD~sG~V~vfD~k~r~i---LR~~~ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLA-AGDESGHVKVFDMKSRVI---LRQLYAHQAPVHVTKFSPQDNT 124 (487)
T ss_pred EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEE-ccCCcCcEEEeccccHHH---HHHHhhccCceeEEEecccCCe
Confidence 344454443222222333345678899987665544 444788999988554210 0001111122233445566778
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
++.+-.....+..-++++.....-+...-+..+..++.|.++.|.+|- +...+|...+.-- .. ..+.+-+-+.|-.
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG-sYDg~vrl~DtR~--~~-~~v~elnhg~pVe 200 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG-SYDGKVRLWDTRS--LT-SRVVELNHGCPVE 200 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec-CCCceEEEEEecc--CC-ceeEEecCCCcee
Confidence 887777777778888888875433445567899999999999999987 5556666666654 21 2233333345655
Q ss_pred EEEeccccEEEEeccceeeeeeecccccee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
-.+-..++.+..+.+ .+.|.+-|+-+..+
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 555555555555543 46677777764333
No 177
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.34 E-value=28 Score=35.30 Aligned_cols=130 Identities=12% Similarity=-0.011 Sum_probs=63.9
Q ss_pred eeEEEEEeeCCCCCccEEecCCC-C--CeEEEE--EEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCC------
Q psy13629 106 YLLDIRIANLSRPLKPVTIIKDL-E--EGAAID--YYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNG------ 173 (395)
Q Consensus 106 ~~~~I~~~~l~~~~~~~~~~~~~-~--~~~gl~--~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~------ 173 (395)
|-+.+.+.|+.. .+....+..- . .|.-+- .++....=|+.-.-+..|+++..+.......+.++ ...
T Consensus 220 yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 446777777766 3333322221 1 232333 34455566666666778888877432211222222 211
Q ss_pred ------------CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe----cC---------------CCCcee
Q psy13629 174 ------------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW----ED---------------IDQPRA 222 (395)
Q Consensus 174 ------------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~----~~---------------~~~P~~ 222 (395)
..-+.+|.+.-..+.||+++...+.|..+|+.....-.++. .+ ...|+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 13468888888899999999999999999987754433332 11 124788
Q ss_pred EEEeCCCCeEEEEe
Q psy13629 223 IALVPQDSIMFWTD 236 (395)
Q Consensus 223 iavdp~~g~LYwtd 236 (395)
+-++.+.++||||.
T Consensus 379 vqlS~DGkRlYvTn 392 (461)
T PF05694_consen 379 VQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-TTSSEEEEE-
T ss_pred EEEccCCeEEEEEe
Confidence 88999999999997
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=84.09 E-value=30 Score=30.80 Aligned_cols=120 Identities=8% Similarity=0.003 Sum_probs=73.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC-CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH-GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~-~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
+|..++..+.....+.....+.+..++|+|.++++..... ....|..++.++. .+..-.-...+.|...|.++
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeecCCCceEEEECCCCC
Confidence 4444444442222233334445899999999998876643 3457777777653 11211234556789998888
Q ss_pred eEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 188 KLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 188 ~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.|-.+..+ .+.|...|.+...+ +..........++-+|+++++-.+.
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKK--ISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEE--eeccccCcEEEEEEcCCCCEEEEEE
Confidence 77776633 46789999884333 3223334567888888777766544
No 179
>KOG0292|consensus
Probab=83.87 E-value=74 Score=35.08 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
-..++..+|++ +--|++|...++.|....++.++. .++-.. +..+...++-.++ ++.|..++++...|.|.|++.
T Consensus 206 DRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 206 DRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ccccceEEecC-CcceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEeccc
Confidence 34466778886 456888988888787777776643 333222 3456788888887 778888999999999999987
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+.....+...-.+-.-||.+| +..||-+
T Consensus 282 Rt~v~tfrrendRFW~laahP-~lNLfAA 309 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHP-ELNLFAA 309 (1202)
T ss_pred ccceeeeeccCCeEEEEEecC-Ccceeee
Confidence 766555544555566677777 4566654
No 180
>KOG0292|consensus
Probab=83.81 E-value=41 Score=36.91 Aligned_cols=162 Identities=9% Similarity=0.069 Sum_probs=99.2
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
...++-||+|+|..-.|..+ .-++.|+-.+..-..+. .-..+.-...+|+++.+ ++-||++-...-.|.|-+.+.
T Consensus 8 kSsRvKglsFHP~rPwILts-lHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS-LHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccccceecCCCCCEEEEe-ecCceeeeehhhhhhHH---hhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccc
Confidence 34577899999987766644 47788888877643111 11122234578999997 889999998889999999988
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
..+.--+...++..+.+.+++.--++. +. ++...|...++.. .+...+...+-.+-..-.+.+.+ .|.++-+-+.
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SA-SDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQ 157 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SA-SDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQ 157 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-Ec-cCCCeEEEEeccC--CceEEEEecCceEEEeeccCCcc-ceEEEecccc
Confidence 777643336688888888887544432 11 3456677777765 23323333332222222233223 3445544555
Q ss_pred eeeeecccccee
Q psy13629 287 FIEVMDYDGYVR 298 (395)
Q Consensus 287 ~I~~~~~dG~~~ 298 (395)
+|.+=|..|-..
T Consensus 158 TVRVWDisGLRk 169 (1202)
T KOG0292|consen 158 TVRVWDISGLRK 169 (1202)
T ss_pred eEEEEeecchhc
Confidence 555555555443
No 181
>KOG2055|consensus
Probab=83.22 E-value=29 Score=35.03 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=95.3
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..-+...++.|+.++++|+.+. +.+.|+.+++.... ........+...-+.+++.. ++.++.+-+..+-+-.++.+
T Consensus 342 KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccc
Confidence 3456778899998888887776 67799999998753 33444445545555666554 55555555667777777754
Q ss_pred C----CceEEEE--ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE-----ecCCcCceeEEEecc
Q psy13629 206 G----KKRKVLY--WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV-----DSTIFWPNGIAIDFN 274 (395)
Q Consensus 206 g----~~~~~l~--~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv-----~~~~~~P~glalD~~ 274 (395)
. +..+.+. .........|.++++...|-.+.......+..+.+.. .+++- ++.++.+..|++.+.
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS----~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS----CTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc----eeeeccCCCCCCcccceEEEEecCC
Confidence 3 2222221 1223456788899988888777644445555555543 11111 235778889999988
Q ss_pred ccEEEEecc
Q psy13629 275 NRLLYWIDG 283 (395)
Q Consensus 275 ~~rLYwaD~ 283 (395)
++.|-+.+.
T Consensus 494 sG~lAvGNe 502 (514)
T KOG2055|consen 494 SGYLAVGNE 502 (514)
T ss_pred CceEEeecC
Confidence 898887764
No 182
>KOG0286|consensus
Probab=82.46 E-value=47 Score=31.77 Aligned_cols=122 Identities=7% Similarity=0.029 Sum_probs=87.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
..-..|++.....+.+....+.+.+|++.+.+.+.|.+..-+..-...++.... ..+ .....-...+.+.+-| .|.
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--c~q-tF~ghesDINsv~ffP-~G~ 242 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--CVQ-TFEGHESDINSVRFFP-SGD 242 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--eeE-eecccccccceEEEcc-CCC
Confidence 334455555455666777888999999999889999999888877777776541 223 3333445678888876 667
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC--CCCceeEEEeCCCCeEEE
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED--IDQPRAIALVPQDSIMFW 234 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYw 234 (395)
-|.|-+.+.....+|+.......+.... ..-..+++++...++||-
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 7788888899999999887776666432 344678999976666664
No 183
>KOG0269|consensus
Probab=82.27 E-value=36 Score=36.57 Aligned_cols=169 Identities=8% Similarity=0.072 Sum_probs=108.9
Q ss_pred EEEEeeCCC---CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSR---PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~---~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|.+.|+.. ....+.+-+....+.-++|+..+-.|..+...++.|..+++...+ ........-.+.++++..+.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~---S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK---SKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc---ccccccccchhhhceeeccC
Confidence 456666654 223446667788899999999999999999999999999998652 23333446678999999999
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE-EecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCc
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l-~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~ 264 (395)
.++.|++-...+.++.-|+.-..+-.+ +..--.-...+-.+| ..-|.+.-|....|...+|.+....+...+++.
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-- 263 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-- 263 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence 999999998999999999865433221 111111223344455 344445535556677788876434444444332
Q ss_pred CceeEEEeccccEEEEeccceeeeeeec
Q psy13629 265 WPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.| =+|+=|--+....+..+.
T Consensus 264 ap--------v~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 264 AP--------VGRVKWRPARSYHLATCS 283 (839)
T ss_pred ce--------eeeeeeccCccchhhhhh
Confidence 12 246666666555554433
No 184
>KOG4328|consensus
Probab=82.18 E-value=28 Score=35.10 Aligned_cols=158 Identities=6% Similarity=-0.014 Sum_probs=84.3
Q ss_pred EEecCCCCCeEEEEEEcCCC-EEEEEECCCCeEEEEEccCCCCCceEE-EEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 122 VTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 122 ~~~~~~~~~~~gl~~d~~~~-~lywsd~~~~~I~~~~~dg~~~~~~~~-i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
.......+++.+++|+|..+ ++..+....+.|..+++++..-..... +....-....+|.+.+.+-.-..+.+..+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34455678899999999987 777777788999999997321101111 2222223344555555444333344445555
Q ss_pred EEEECCCCceEEEEec--CCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 200 EVSSLDGKKRKVLYWE--DIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~--~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
...++.+..-+++... .-..-.++-+...++.+| ..+|| .-.+.-.+++|+......+.. ...++|++.+...
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHK---KKITSVALNPVCP 335 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhh---cccceeecCCCCc
Confidence 5555555444433322 122234444555555544 44566 555666667773111112222 2567777776665
Q ss_pred EEEEecc
Q psy13629 277 LLYWIDG 283 (395)
Q Consensus 277 rLYwaD~ 283 (395)
.++-+.+
T Consensus 336 ~~laT~s 342 (498)
T KOG4328|consen 336 WFLATAS 342 (498)
T ss_pred hheeecc
Confidence 5544443
No 185
>KOG0276|consensus
Probab=81.86 E-value=74 Score=33.62 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=95.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
...+.-+++++|.+-.+..+- .++.+...+.+.-.+ ...+-.....--.+--| ...+...+-+...+|.+++.+.
T Consensus 12 rSdRVKsVd~HPtePw~la~L-ynG~V~IWnyetqtm--VksfeV~~~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAAL-YNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEee-ecCeeEEEeccccee--eeeeeecccchhhheee--eccceEEEecCCceEEEEeccc
Confidence 456778888888776665543 567777777775321 11111111111111111 2445667778889999999998
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
..+...+....+..+.|+++|..-++. |. ++...|...+-++. -.....+..+-++...+++.+.+.+-|.+..-+.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vL-ts-SDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVL-TS-SDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEE-ec-CCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 877777766778899999999766543 32 34566777777763 3444555566667777788776665555544333
Q ss_pred ee
Q psy13629 287 FI 288 (395)
Q Consensus 287 ~I 288 (395)
+|
T Consensus 164 TV 165 (794)
T KOG0276|consen 164 TV 165 (794)
T ss_pred cE
Confidence 33
No 186
>KOG1274|consensus
Probab=81.84 E-value=87 Score=34.43 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.+++... + .|.+...++.|.++.++.. ...+++..---..+.++|+. +|+.-..-+..-.|.+.+++.
T Consensus 55 ~g~~v~~ia~~s--~-~f~~~s~~~tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 55 SGELVSSIACYS--N-HFLTGSEQNTVLRYKFPSG---EEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred cCceeEEEeecc--c-ceEEeeccceEEEeeCCCC---CccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccc
Confidence 334455665542 2 5667778899999999976 34445544334567899986 555555666667788888877
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--C-----CcCceeEEEeccccEEE
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--T-----IFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--~-----~~~P~glalD~~~~rLY 279 (395)
......+...-....+|.++|.+.+|-++.. ..+|...+++.. .-..++..- . -.-.+-++..+.++.+-
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 6655544344556678889998888877763 355666666431 111111110 0 01122345555555554
Q ss_pred Eeccceeeeeeecccccee
Q psy13629 280 WIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~ 298 (395)
+... .+.|.+.+.+|-..
T Consensus 205 ~~~~-d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 205 VPPV-DNTVKVYSRKGWEL 222 (933)
T ss_pred eecc-CCeEEEEccCCcee
Confidence 4433 35566666555443
No 187
>KOG0293|consensus
Probab=80.77 E-value=65 Score=32.29 Aligned_cols=186 Identities=14% Similarity=0.066 Sum_probs=111.6
Q ss_pred cccCCCCceeE--------EEEEeeCCCCCc-cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEE
Q psy13629 98 EKLQPDGAYLL--------DIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168 (395)
Q Consensus 98 ~~~~~~~~~~~--------~I~~~~l~~~~~-~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~ 168 (395)
..-+++|.|+. -|..+..+..-+ .-..+.....+..+.|+|+.+.|.-.. .+..+...+.+.+. ...
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd---~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGD---LRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC-chHheeeccCCcch---hhh
Confidence 35566677762 334444444322 223344556677789999998887554 44557777777542 122
Q ss_pred EEeCC-CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 169 VITNG-LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 169 i~~~~-~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
....+ ..++...|--+.+.. ++|-+....|...++||.....--........++|+.+++.+++..+ ...+|...+
T Consensus 306 ~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~ 382 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYN 382 (519)
T ss_pred hcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe--cccceeeec
Confidence 22222 345666666664444 67777788999999999754322112235578999999999998776 245666666
Q ss_pred cCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 248 MNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 248 ~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.... ..+. +++++ +-...+.|. .++++..++-..+.|.-=|+.
T Consensus 383 ~e~~-~dr~-lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 383 REAR-VDRG-LISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred hhhh-hhhc-ccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecc
Confidence 6541 2232 33332 235667777 445677777666767666655
No 188
>KOG0281|consensus
Probab=80.68 E-value=12 Score=36.51 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=106.3
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+|++.|...-.-...+....++...|.|| +++..+..++.+|...+.+.. +.-..........-++.+. +
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg---e~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG---EPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC---chhhHHhhhcceeEEEEEe---C
Confidence 366666654422233455567788888887 448899988999999999865 2222333334455566653 4
Q ss_pred eEEEEeCCCCeEEEEECCCCce----EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKR----KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~----~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
.+-+|-+...+|.|-+++...- ++++ ......+-+-+| . ++.++..| ...|...+++. .. ++..--
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~-kyIVsASg-DRTikvW~~st--~e---fvRtl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--D-KYIVSASG-DRTIKVWSTST--CE---FVRTLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--c-ceEEEecC-CceEEEEeccc--ee---eehhhh
Confidence 4556777888999999987542 2333 334455555554 3 34455534 56677777765 11 222222
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.-.|+|.--..+||.++-+.+++|...+...
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccc
Confidence 34678998778899999998888887666544
No 189
>KOG4441|consensus
Probab=80.59 E-value=68 Score=33.91 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=102.3
Q ss_pred CceeEEEEEeeCCCCCccEEecC--CCCCeEEEEEEcCCCEEEEEECCC------CeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 104 GAYLLDIRIANLSRPLKPVTIIK--DLEEGAAIDYYYKKSMVCWTDHGT------EMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 104 ~~~~~~I~~~~l~~~~~~~~~~~--~~~~~~gl~~d~~~~~lywsd~~~------~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
+.....+..+|... ..-....+ ....-.|+++- ++.||.+.+.+ +.+.+++.+.. .+.. ...+.
T Consensus 297 ~~~~~~ve~yd~~~-~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~--~a~M~ 368 (571)
T KOG4441|consen 297 GQSLRSVECYDPKT-NEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTP--VAPMN 368 (571)
T ss_pred CcccceeEEecCCc-CcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC---ceec--cCCcc
Confidence 44445666666654 22222221 22234555554 67899998766 46777777765 2222 23332
Q ss_pred -CcceEEEecCCCeEEEEeCC-----CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC------CCCeE
Q psy13629 176 -TPDGLAIDWLTEKLYWTDSE-----TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG------EVPKI 243 (395)
Q Consensus 176 -~p~glAVD~~~~~LYwtd~~-----~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~------~~~~I 243 (395)
.=.+.++-..+|.||..-+. ...++++|+....-..+.. -...-.+.++-..+|+||..- | .-..+
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~G-G~~~~~~~l~sv 446 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIG-GGDGSSNCLNSV 446 (571)
T ss_pred CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEc-CcCCCccccceE
Confidence 23346666679999998743 3579999998876655542 222344566666799999886 3 12678
Q ss_pred EEEecCCCCcceEEEEecC-CcCceeEEEeccccEEEEeccce-----eeeeeeccccce
Q psy13629 244 ERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYV 297 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~ 297 (395)
++.+... ..=+.+.... -..-.|++. .+++||+.=... .+|++.++....
T Consensus 447 e~YDP~t--~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 447 ECYDPET--NTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCCC--CceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 8888875 2212222211 112234444 488999985432 345555554443
No 190
>KOG2111|consensus
Probab=79.43 E-value=62 Score=31.26 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=73.0
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeE-EEeCCCCeEEEEeeC-CCCeEEEEecCCCCcce
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI-ALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHR 255 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~i-avdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~ 255 (395)
.++-++ .++|.+.-. ++|+|+.....-+..-.-+...+|+|+ +++|....-+.+-.| ....|...++.-...+.
T Consensus 98 ~~V~l~--r~riVvvl~--~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~ 173 (346)
T KOG2111|consen 98 KAVKLR--RDRIVVVLE--NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA 173 (346)
T ss_pred eeEEEc--CCeEEEEec--CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC
Confidence 344443 455555543 678888876443333222667889985 567777777777666 56788888887632223
Q ss_pred EEEEecCCcCceeEEEeccccEEEEeccceeeeeeec-cccceeee
Q psy13629 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV 300 (395)
Q Consensus 256 ~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~ 300 (395)
..++..+..-..-++|...+-+|=-+-.+.--|...| .+|....+
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 4667766666777888866665554444444445555 45655555
No 191
>KOG1539|consensus
Probab=78.99 E-value=66 Score=34.97 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=83.6
Q ss_pred CcccccccCCCCcee------EEEEEeeCCCC---CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC
Q psy13629 93 ERCSFEKLQPDGAYL------LDIRIANLSRP---LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV 163 (395)
Q Consensus 93 ~~C~~~~~~~~~~~~------~~I~~~~l~~~---~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~ 163 (395)
..|.+...++-|.|. -.|.++++..+ ..+..-...-+...|++.|..++ +.++-...+-+.-+++++..+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce
Confidence 344444444444444 26777777552 12222234556789999997655 555555677777777776421
Q ss_pred CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeE
Q psy13629 164 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKI 243 (395)
Q Consensus 164 ~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I 243 (395)
...+- -...+.++...-..+ ++...-..-.|.++|.-.......+..-.++.++++++|++++|-.++. ...|
T Consensus 528 --~~~l~--l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm--D~tI 600 (910)
T KOG1539|consen 528 --KKSLR--LGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM--DSTI 600 (910)
T ss_pred --eeeec--cCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec--CCcE
Confidence 01110 112344444433222 2223334457888886554443334355788999999999999887763 2456
Q ss_pred EEEecC
Q psy13629 244 ERGAMN 249 (395)
Q Consensus 244 ~~~~~d 249 (395)
...++-
T Consensus 601 r~wDlp 606 (910)
T KOG1539|consen 601 RTWDLP 606 (910)
T ss_pred EEEecc
Confidence 666654
No 192
>KOG4328|consensus
Probab=78.64 E-value=18 Score=36.46 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=92.7
Q ss_pred EEEEeeCCC----CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--CCCCcceEEE
Q psy13629 109 DIRIANLSR----PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~----~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--~~~~p~glAV 182 (395)
+|...++++ ........+....+.+|.|.+.+-.-+.+-..+++|...++++.. .+.+... .-..-.++-+
T Consensus 211 ~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i---~e~v~s~~~d~~~fs~~d~ 287 (498)
T KOG4328|consen 211 QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI---SEEVLSLDTDNIWFSSLDF 287 (498)
T ss_pred cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh---hHHHhhcCccceeeeeccc
Confidence 455555532 122445556666678888887764333344467777777777652 1222222 1122344555
Q ss_pred ecCCCeEEEEeCCCCeEEEEEC--CCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceE-EE
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSL--DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRK-VI 258 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~l--dg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~-~l 258 (395)
....+.+|+.+... ...+.|+ +|+....+... -...++++++|...+++.|..- ...+|+-..-=+ ..+. ++
T Consensus 288 ~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh-~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~--~K~sp~l 363 (498)
T KOG4328|consen 288 SAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLH-KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR--GKASPFL 363 (498)
T ss_pred cCCCccEEEeeccc-ceEEEEeecCCccchhhhhh-hcccceeecCCCCchheeecccCcceeeeehhhhc--CCCCcce
Confidence 55667777776432 4444444 44432222212 2378999999999998888622 345565544322 2222 22
Q ss_pred Ee-cCCcCceeEEEeccccEEEEeccceeeeeeec
Q psy13629 259 VD-STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 259 v~-~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
-. .+-...+.-.+.+.+++|.-++ .++.|...+
T Consensus 364 st~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~d 397 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFD 397 (498)
T ss_pred ecccccceeeeeEEcCCCCceEeec-cCCceEEee
Confidence 22 2333445555666777744443 445554443
No 193
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.38 E-value=75 Score=31.61 Aligned_cols=140 Identities=10% Similarity=0.090 Sum_probs=80.7
Q ss_pred EEEEEeeCCCC----CccEEecCCCCCeEEEEEEcCCCEEEE-EEC--CCCeEEEEEccCCCCCceEEEEeCCC--CCcc
Q psy13629 108 LDIRIANLSRP----LKPVTIIKDLEEGAAIDYYYKKSMVCW-TDH--GTEMISCCTFDGNNVGSKHNVITNGL--ITPD 178 (395)
Q Consensus 108 ~~I~~~~l~~~----~~~~~~~~~~~~~~gl~~d~~~~~lyw-sd~--~~~~I~~~~~dg~~~~~~~~i~~~~~--~~p~ 178 (395)
+++..+++... .....+.+.........-+ .++.+|+ ++. .+++|.+++++.........++...- ....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~ 330 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE 330 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence 47788887652 2455555544444332222 2666665 553 35689999998764222343444433 2567
Q ss_pred eEEEecCCCeEEEEe--CCCCeEEEEECC-CCceEEEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecCC
Q psy13629 179 GLAIDWLTEKLYWTD--SETNKLEVSSLD-GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNG 250 (395)
Q Consensus 179 glAVD~~~~~LYwtd--~~~~~I~v~~ld-g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~dG 250 (395)
++.+. ++.|++.. ....+|.+.+++ +.....+.........++.-++....++++-.+ ..+.|++.++..
T Consensus 331 ~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 331 DVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 77764 67777776 445689999999 665555543333334555556777777766533 457888888875
No 194
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=77.79 E-value=77 Score=31.41 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=51.8
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec-CCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DID 218 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~~~ 218 (395)
++.||..+ .++.++.++..... .+-......+..++++ +++||+.+. .+.+...+.......=-... ...
T Consensus 256 ~~~vy~~~-~~g~l~ald~~tG~-----~~W~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALA-YNGNLVALDLRSGQ-----IVWKREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CCEEEEEE-cCCeEEEEECCCCC-----EEEeecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEEEcccccCCC
Confidence 45677665 34566666665431 1111223344455664 688998874 57888888865432110100 001
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
...+.++ .+++||+.+ . ...+...+.+
T Consensus 327 ~~~sp~v--~~g~l~v~~-~-~G~l~~ld~~ 353 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGD-S-EGYLHWINRE 353 (394)
T ss_pred cccCCEE--ECCEEEEEe-C-CCEEEEEECC
Confidence 1122233 268898887 2 3567777764
No 195
>KOG2110|consensus
Probab=77.41 E-value=77 Score=31.22 Aligned_cols=114 Identities=10% Similarity=-0.000 Sum_probs=67.2
Q ss_pred eEEEEEEcCCCEEEEEE-CCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEE-EECCCCc
Q psy13629 131 GAAIDYYYKKSMVCWTD-HGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEV-SSLDGKK 208 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd-~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v-~~ldg~~ 208 (395)
.-++..+..+..|-+-+ ...+.|..++...- .....+...-.....||+++ .|.+-.|-++.++|-| +......
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl---~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINL---QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccc---eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCcc
Confidence 33444444443444433 24577888888764 22334444445678999997 6777778888887644 4443222
Q ss_pred eEEEEecC--CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 209 RKVLYWED--IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 209 ~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+.--+..+ ..+.+.|+++|+..+|-.+- ....|....++-
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASS--NTETVHIFKLEK 249 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEec--CCCeEEEEEecc
Confidence 22112122 45678999999998776553 355566666654
No 196
>KOG0270|consensus
Probab=77.39 E-value=84 Score=31.65 Aligned_cols=172 Identities=8% Similarity=0.016 Sum_probs=104.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
+.+...|++...-...+....+.+..++|++....+..+...++++...+....+.....--+ -...+-++.|+...
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSE 342 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCc
Confidence 377778887733344555578889999999999999999888888877776522111111111 13456677777777
Q ss_pred eEEEEeCCCCeEEEEECCCC--ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--CC
Q psy13629 188 KLYWTDSETNKLEVSSLDGK--KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--TI 263 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~--~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--~~ 263 (395)
+.|++....+.++-+|+... -.-++. ..-....||.+....-.|-.|. +....+...++++ .+.+..... .+
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~-s~d~~Vklw~~~~--~~~~~v~~~~~~~ 418 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTA-STDKVVKLWKFDV--DSPKSVKEHSFKL 418 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeec-cccceEEEEeecC--CCCcccccccccc
Confidence 77777666677776665543 222333 2234677899988887887776 4355667777776 333332222 12
Q ss_pred cCceeEEEeccccEEEEecccee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~ 286 (395)
+.-..++.++..-.+|..-...+
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred cceeecccCCCcceEEEecCccc
Confidence 23344556655555555554444
No 197
>KOG2048|consensus
Probab=76.71 E-value=1.1e+02 Score=32.55 Aligned_cols=165 Identities=9% Similarity=0.029 Sum_probs=96.6
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.+..+.|..+++++|........+..+.+++....+...+.. .......-|++.+.++.|-..+ ..+.|.++++.+..
T Consensus 430 ~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 430 DASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLE 508 (691)
T ss_pred cceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccce
Confidence 456677777788888776566677777777653212122222 2456778899999888888777 67899999999987
Q ss_pred eEEEEecCCCCceeEEEe-CCCCeEEEEeeCCCCeEEEEecCCCCc------ceEEE---EecCCcCceeEEEeccccEE
Q psy13629 209 RKVLYWEDIDQPRAIALV-PQDSIMFWTDWGEVPKIERGAMNGDPR------HRKVI---VDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 209 ~~~l~~~~~~~P~~iavd-p~~g~LYwtd~~~~~~I~~~~~dG~~~------~~~~l---v~~~~~~P~glalD~~~~rL 278 (395)
..-+....-....+.++. +..+.|-+++ . +.+++-.+++-... +.+.+ ..+-.....|+.+|..+...
T Consensus 509 ~~~l~~rln~~vTa~~~~~~~~~~lvvat-s-~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~ 586 (691)
T KOG2048|consen 509 SHLLKVRLNIDVTAAAFSPFVRNRLVVAT-S-NNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSR 586 (691)
T ss_pred eecchhccCcceeeeeccccccCcEEEEe-c-CCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccE
Confidence 766552222334445555 3455566655 2 35566666632100 00001 11113346788899666655
Q ss_pred EEeccceeeeeeecccccee
Q psy13629 279 YWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~~~ 298 (395)
+|.-. .+.+..++.++...
T Consensus 587 ~~~~~-a~w~~~id~~~~lp 605 (691)
T KOG2048|consen 587 FIVYD-AHWSCLIDFSLPLP 605 (691)
T ss_pred EEEEc-CcEEEEEecCCCCC
Confidence 55532 24455566555433
No 198
>KOG2139|consensus
Probab=76.53 E-value=82 Score=31.09 Aligned_cols=167 Identities=10% Similarity=0.019 Sum_probs=92.3
Q ss_pred CCCCeEEEEEEcCC----------CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC
Q psy13629 127 DLEEGAAIDYYYKK----------SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET 196 (395)
Q Consensus 127 ~~~~~~gl~~d~~~----------~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~ 196 (395)
..++...|+|-|.. +..+|++.......|...-++.. ..+.+-..+-.-...|+-...+..|--+..+.
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~-~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTH-HLQVLQDPGHNPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccccccccc-chhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence 45567777776654 55566654332221111111100 11122222333345555554444443334556
Q ss_pred CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe-cCCCCcceEEEEecCCcCceeEEEeccc
Q psy13629 197 NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA-MNGDPRHRKVIVDSTIFWPNGIAIDFNN 275 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~-~dG~~~~~~~lv~~~~~~P~glalD~~~ 275 (395)
..|.+-+.|......+....+..-.-+-.+|++.+||-+. ...+.|.- .+-.-+..+.+...+ ...+-.-++.+
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt---~davfrlw~e~q~wt~erw~lgsg--rvqtacWspcG 292 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT---CDAVFRLWQENQSWTKERWILGSG--RVQTACWSPCG 292 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec---ccceeeeehhcccceecceeccCC--ceeeeeecCCC
Confidence 7888888888877777644444444567788888887665 23344443 222112233333332 34455567888
Q ss_pred cEEEEeccceeeeeeeccccceee
Q psy13629 276 RLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
.+|.++..+..+++++.+++....
T Consensus 293 sfLLf~~sgsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSLTFDGEDSV 316 (445)
T ss_pred CEEEEEEcCCceEEEEeecCCCcc
Confidence 999999999999999998886543
No 199
>KOG4441|consensus
Probab=76.47 E-value=1.1e+02 Score=32.48 Aligned_cols=166 Identities=12% Similarity=0.096 Sum_probs=93.9
Q ss_pred eeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC-----CeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 106 YLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-----EMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 106 ~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~-----~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
+...+.++|... ..-+.+.+-...-.+.+.-.-++.||...+.+ +.|.+++.... ....+. .-...-.+.
T Consensus 347 ~l~~ve~YD~~~-~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 347 RLSSVERYDPRT-NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVA-PMLTRRSGH 421 (571)
T ss_pred ccceEEEecCCC-CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC---cccccC-CCCcceeee
Confidence 345667777765 33222222222223334444578999998654 35777777764 333332 222234455
Q ss_pred EEecCCCeEEEEeC------CCCeEEEEECCCCceEEEEecCCCCc-eeEEEeCCCCeEEEEeeC-----CCCeEEEEec
Q psy13629 181 AIDWLTEKLYWTDS------ETNKLEVSSLDGKKRKVLYWEDIDQP-RAIALVPQDSIMFWTDWG-----EVPKIERGAM 248 (395)
Q Consensus 181 AVD~~~~~LYwtd~------~~~~I~v~~ldg~~~~~l~~~~~~~P-~~iavdp~~g~LYwtd~~-----~~~~I~~~~~ 248 (395)
++-..+|+||.+-+ ...+++++|+....-+.+. .+..+ .+..+...+++||+.- | ....|++.+.
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~--~M~~~R~~~g~a~~~~~iYvvG-G~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA--PMNTRRSGFGVAVLNGKIYVVG-GFDGTSALSSVERYDP 498 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC--CcccccccceEEEECCEEEEEC-CccCCCccceEEEEcC
Confidence 66667999999975 3468999999887766554 22222 2223333589999874 3 1345888888
Q ss_pred CCCCcceEEEEecC-CcCceeEEEeccccEEEEecc
Q psy13629 249 NGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 249 dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD~ 283 (395)
.. ..=+.+.... -....|+++. +++||+.-.
T Consensus 499 ~~--~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG 530 (571)
T KOG4441|consen 499 ET--NQWTMVAPMTSPRSAVGVVVL--GGKLYAVGG 530 (571)
T ss_pred CC--CceeEcccCccccccccEEEE--CCEEEEEec
Confidence 76 2222222121 1223455555 788988754
No 200
>KOG0918|consensus
Probab=75.89 E-value=79 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=21.3
Q ss_pred ceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 220 PRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 220 P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
..+|.++.+.++||++.|- ...|.+.++
T Consensus 314 ITDilISmDDRFLYvs~WL-HGDirQYdI 341 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWL-HGDIRQYDI 341 (476)
T ss_pred hheeEEeecCcEEEEEeee-ecceeeecc
Confidence 4688999999999999996 344555544
No 201
>KOG0299|consensus
Probab=75.85 E-value=95 Score=31.45 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=77.4
Q ss_pred cccCCCCcee------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe
Q psy13629 98 EKLQPDGAYL------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 171 (395)
Q Consensus 98 ~~~~~~~~~~------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~ 171 (395)
...++|+.|+ +-|.+.+.+.-+....+....+.+.+++|-..+..||-+. .++.|..++.+.-. ..+++.
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-~Drsvkvw~~~~~s--~vetly- 283 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-ADRSVKVWSIDQLS--YVETLY- 283 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-cCCceEEEehhHhH--HHHHHh-
Confidence 4667777777 3556666665344445566778899999999999999776 67778888877532 111111
Q ss_pred CCCCCcceEEEecCCCeEEEEeC-CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 172 NGLITPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 172 ~~~~~p~glAVD~~~~~LYwtd~-~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
.......+| |-..+-=-.|-. ...++.+.++.-..+.+.. ..-..+-.+++-.... |+|- +....|...++-
T Consensus 284 GHqd~v~~I--daL~reR~vtVGgrDrT~rlwKi~eesqlifr-g~~~sidcv~~In~~H--fvsG-SdnG~IaLWs~~ 356 (479)
T KOG0299|consen 284 GHQDGVLGI--DALSRERCVTVGGRDRTVRLWKIPEESQLIFR-GGEGSIDCVAFINDEH--FVSG-SDNGSIALWSLL 356 (479)
T ss_pred CCccceeee--chhcccceEEeccccceeEEEeccccceeeee-CCCCCeeeEEEecccc--eeec-cCCceEEEeeec
Confidence 111222233 322221112322 3455666666333333333 4444666666654333 3332 235556666654
No 202
>KOG3914|consensus
Probab=75.80 E-value=88 Score=31.05 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=86.5
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC--CeEEEEECC-CC
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLD-GK 207 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~--~~I~v~~ld-g~ 207 (395)
+....+.+.++.|++++ ..+....+.++++.....-.........|+.+..+...-..-++|... ..+.+.+.+ |.
T Consensus 65 ~~~~~~s~~~~llAv~~-~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVAT-SSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEe-CCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34445666666777766 455555556655431001111122345777887776666666677432 233333333 22
Q ss_pred ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceee
Q psy13629 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287 (395)
Q Consensus 208 ~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~ 287 (395)
.+ .++ ..+.-..+++++|+..++.-+|. ..+|......+.. ....+...+-..-..|++- .+++.|+-+++++
T Consensus 144 ~~-~~l-GhvSml~dVavS~D~~~IitaDR--DEkIRvs~ypa~f-~IesfclGH~eFVS~isl~--~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CE-PIL-GHVSMLLDVAVSPDDQFIITADR--DEKIRVSRYPATF-VIESFCLGHKEFVSTISLT--DNYLLLSGSGDKT 216 (390)
T ss_pred cc-hhh-hhhhhhheeeecCCCCEEEEecC--CceEEEEecCccc-chhhhccccHhheeeeeec--cCceeeecCCCCc
Confidence 22 222 45566789999999999988883 3556666666631 1222222222345556664 5566788777787
Q ss_pred eeeecc
Q psy13629 288 IEVMDY 293 (395)
Q Consensus 288 I~~~~~ 293 (395)
+..=++
T Consensus 217 lr~Wd~ 222 (390)
T KOG3914|consen 217 LRLWDI 222 (390)
T ss_pred EEEEec
Confidence 766664
No 203
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=75.33 E-value=35 Score=35.61 Aligned_cols=113 Identities=16% Similarity=0.031 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCC----------------CeEEEEEccCCCC----CceEEEEe-------------
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGT----------------EMISCCTFDGNNV----GSKHNVIT------------- 171 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~----------------~~I~~~~~dg~~~----~~~~~i~~------------- 171 (395)
.....++.++++.+..+.+|++-.++ +.|+|+...+... ...+..+.
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 44567889999999999999986433 3688877654310 01111111
Q ss_pred ----CCCCCcceEEEecCCCeEEEEeCCCC----e-EEEE---ECCCC--ceEEEEe-cCCCCceeEEEeCCCCeEEEEe
Q psy13629 172 ----NGLITPDGLAIDWLTEKLYWTDSETN----K-LEVS---SLDGK--KRKVLYW-EDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 172 ----~~~~~p~glAVD~~~~~LYwtd~~~~----~-I~v~---~ldg~--~~~~l~~-~~~~~P~~iavdp~~g~LYwtd 236 (395)
..+.+|.+|++|+.++..-.||.... + ..+. -.+++ ..+..+. ....+-.|.+++|+.+.||+.-
T Consensus 493 ~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred CcccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 12566999999997666666674332 1 1111 11221 2222221 2235677999999999999876
Q ss_pred e
Q psy13629 237 W 237 (395)
Q Consensus 237 ~ 237 (395)
.
T Consensus 573 Q 573 (616)
T COG3211 573 Q 573 (616)
T ss_pred c
Confidence 3
No 204
>KOG0645|consensus
Probab=75.11 E-value=77 Score=30.05 Aligned_cols=161 Identities=7% Similarity=-0.043 Sum_probs=94.5
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCCCeEEEEeCCCCeEEEEE-CC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSS-LD 205 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~-ld 205 (395)
..+.-.+|+++..+.|+.+-..+++|...+..+.....-.+++.. .-...+.+|-.+.++.|- +-+...+..... -+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La-~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA-SASFDATVVIWKKED 92 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE-EeeccceEEEeecCC
Confidence 456889999998788999998899998888885321122233332 336788999988776443 333444433332 33
Q ss_pred CCceE-EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC-CcceEEEEecCCcCceeEEEeccccEEEEecc
Q psy13629 206 GKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD-PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 206 g~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~-~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~ 283 (395)
+.... ..+...-....+++.++..++|--+. . ...|.....+.. .-.-..+++.+.+--..++..+.++ |.++.+
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCS-R-DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCS-R-DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEee-C-CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 44333 33334466788999998776664333 2 334444444421 0223344556666566666665544 555666
Q ss_pred ceeeeeeec
Q psy13629 284 RLTFIEVMD 292 (395)
Q Consensus 284 ~~~~I~~~~ 292 (395)
..|+|....
T Consensus 170 YDnTIk~~~ 178 (312)
T KOG0645|consen 170 YDNTIKVYR 178 (312)
T ss_pred cCCeEEEEe
Confidence 667665444
No 205
>KOG0268|consensus
Probab=74.31 E-value=32 Score=33.77 Aligned_cols=163 Identities=9% Similarity=0.080 Sum_probs=103.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.+.|...........-+......+-|.+..-.|..+-.+++.|..+++.... ....++.. -.+++|+..+ ...
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi~~--mRTN~IswnP-eaf 242 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVILT--MRTNTICWNP-EAF 242 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC--ccceeeee--ccccceecCc-ccc
Confidence 455555544333444455667778889999988888888889999999998653 22333332 3688999998 778
Q ss_pred EEEEeCCCCeEEEEECCCCceEE-EEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKV-LYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~-l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
.|.+-.+...++.+|+.--.+-. +...-.....++.++| .|.=|++- +....|.....+.. ..|.+..+...+.-.
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Efvsg-syDksIRIf~~~~~-~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSG-SYDKSIRIFPVNHG-HSRDIYHTKRMQHVF 319 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhccc-cccceEEEeecCCC-cchhhhhHhhhheee
Confidence 88888888889988875533322 2223345567788888 44556665 32233444444441 456666665555666
Q ss_pred eEEEeccccEEE
Q psy13629 268 GIAIDFNNRLLY 279 (395)
Q Consensus 268 glalD~~~~rLY 279 (395)
++....+.+.|+
T Consensus 320 ~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 320 CVKYSMDSKYII 331 (433)
T ss_pred EEEEeccccEEE
Confidence 666555555433
No 206
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.25 E-value=71 Score=29.26 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred EEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCC----CcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 132 AAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLI----TPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 132 ~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~----~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
-||.++ ++++|-+-. +...|.+.++++. +.+....+. .-+||.. .+..+|.-.+..+.-+++|.+
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~g-----q~~~s~~l~~~~~FgEGit~--~gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTG-----QEIFSEKLAPDTVFGEGITK--LGDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCc-----eEEEEeecCCccccccceee--ccceEEEEEeccceeEEEChH
Confidence 466666 447887754 3568999999965 223333332 2356654 366777666666666777766
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC---CcCceeEEEeccccEEEEec
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST---IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~---~~~P~glalD~~~~rLYwaD 282 (395)
.-.+.--+ .--.+-.||+-| ...|.-+| | +..+.--+...-....++.+..+ +..-|. +.+..+.||=--
T Consensus 120 t~~~lg~~-~y~GeGWgLt~d--~~~Limsd-G-satL~frdP~tfa~~~~v~VT~~g~pv~~LNE--LE~VdG~lyANV 192 (262)
T COG3823 120 TLEELGRF-SYEGEGWGLTSD--DKNLIMSD-G-SATLQFRDPKTFAELDTVQVTDDGVPVSKLNE--LEWVDGELYANV 192 (262)
T ss_pred Hhhhhccc-ccCCcceeeecC--CcceEeeC-C-ceEEEecCHHHhhhcceEEEEECCeecccccc--eeeeccEEEEee
Confidence 54332222 112234455554 33354444 3 22222222221111222222221 112232 334467888878
Q ss_pred cceeeeeeeccccceeee-eeeceeeeeeeeccCCccccceeeeec
Q psy13629 283 GRLTFIEVMDYDGYVRLV-TSLGHINLELYCNVFPKTCENFMKHCE 327 (395)
Q Consensus 283 ~~~~~I~~~~~dG~~~~~-t~~g~~~i~Lf~d~ap~t~~nf~~l~~ 327 (395)
|.+++|.+++.+...+.. ..+..+.-++-.+..--.+-|-+++.+
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~ 238 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDP 238 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecC
Confidence 889999999987766654 334443222222222233445555444
No 207
>PRK13616 lipoprotein LpqB; Provisional
Probab=74.12 E-value=1.3e+02 Score=32.08 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=76.8
Q ss_pred eEEEEEEcCCCEEEEEECC-----------CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 131 GAAIDYYYKKSMVCWTDHG-----------TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~-----------~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
...-.|++.++.|++.... .+.|+...+++.. ... ..-..+..+++.+.+.+|.+.-. ++|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge---~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v 470 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASA---VAS---RVPGPISELQLSRDGVRAAMIIG--GKV 470 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCch---hhh---ccCCCcCeEEECCCCCEEEEEEC--CEE
Confidence 3445688886666655322 2344444454431 111 11235888999888888888764 577
Q ss_pred EE---EECCCCceEEE-----EecCCCC-ceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEE
Q psy13629 200 EV---SSLDGKKRKVL-----YWEDIDQ-PRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIA 270 (395)
Q Consensus 200 ~v---~~ldg~~~~~l-----~~~~~~~-P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gla 270 (395)
++ ...++.. ..+ +...+.. +..++=-. .+.|++..-+....++++.+|| ...+.+-..++. +...+
T Consensus 471 ~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~vDG--~~~~~~~~~n~~-~~v~~ 545 (591)
T PRK13616 471 YLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVNLDG--SNSDALPSRNLS-APVVA 545 (591)
T ss_pred EEEEEEeCCCCc-eeecccEEeecccCCccccceEec-CCEEEEEecCCCCceEEEecCC--ccccccCCCCcc-CceEE
Confidence 77 4433333 222 2133333 45554443 3446665434456799999999 555443332222 33355
Q ss_pred EeccccEEEEeccc
Q psy13629 271 IDFNNRLLYWIDGR 284 (395)
Q Consensus 271 lD~~~~rLYwaD~~ 284 (395)
|.-....||++|+.
T Consensus 546 vaa~~~~iyv~~~~ 559 (591)
T PRK13616 546 VAASPSTVYVTDAR 559 (591)
T ss_pred EecCCceEEEEcCC
Confidence 55445678988854
No 208
>KOG4378|consensus
Probab=74.02 E-value=1.1e+02 Score=31.44 Aligned_cols=135 Identities=12% Similarity=0.072 Sum_probs=85.7
Q ss_pred EEEEeeCCCCCccEEecCC-CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-CCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~-~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-~~~p~glAVD~~~ 186 (395)
+|.+..+..+.+.+.+..+ -....=|.|++..+.+..+-...+.|..++..|-. ..--.... -.-..||.+.+.+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCc
Confidence 5555555544444444333 34445789999999998888788899999998852 11111111 1235789999999
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCc-eeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP-RAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P-~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
..|+++-....+|..+|.........+. ...| ..+|+.+.+-+|..- ....+|.-.+|-+
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG--~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAG--NSKGELIAYDMRS 281 (673)
T ss_pred cceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEee--cCCceEEEEeccc
Confidence 9999999999999999987544332221 2223 356676644333322 2356777777776
No 209
>KOG0264|consensus
Probab=73.82 E-value=1e+02 Score=30.93 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=86.0
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC----CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~----~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
.+..+||.|.....--..+...+.+|...++..... ....+++...-...++++....+..||-+-...+.+...|
T Consensus 177 ~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 177 EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 344788888877766666666778888888875432 1233444555567899999999999999988889999988
Q ss_pred CCC--CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 204 LDG--KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 204 ldg--~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
... ......+..--...+.+++.|.+++|.-|- +...+|...++--
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~-S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG-SADKTVALWDLRN 304 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEec-cCCCcEEEeechh
Confidence 873 322233323456678999999999888776 3356677777654
No 210
>KOG0303|consensus
Probab=72.89 E-value=1.1e+02 Score=30.66 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=70.5
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEE
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLE 200 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~ 200 (395)
...+....++..-++|++.-..+..+-..+++|...+...+. ..+..........+...+ +|.+..|.....+|.
T Consensus 124 vv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge----ali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 124 VVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE----ALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVR 198 (472)
T ss_pred eEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc----eeeecCCCCeEEEEEecc-CCceeeeecccceeE
Confidence 344455666777789999999999998899999999998642 223333344456777776 566667777788999
Q ss_pred EEECCCCceEE-EEe-cCCCCceeEEEeCCCCeEEEEe
Q psy13629 201 VSSLDGKKRKV-LYW-EDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 201 v~~ldg~~~~~-l~~-~~~~~P~~iavdp~~g~LYwtd 236 (395)
+.+........ -.. ++...++.|-+. +|.++-|-
T Consensus 199 v~dpr~~~~v~e~~~heG~k~~Raifl~--~g~i~tTG 234 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKPARAIFLA--SGKIFTTG 234 (472)
T ss_pred EEcCCCCcEeeecccccCCCcceeEEec--cCceeeec
Confidence 99976543321 111 234445555553 45555443
No 211
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=97 Score=29.89 Aligned_cols=134 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceE---EEecCCCeEEEEeCC--CCeEEEEECCCCceEEEE
Q psy13629 139 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL---AIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLY 213 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl---AVD~~~~~LYwtd~~--~~~I~v~~ldg~~~~~l~ 213 (395)
..++.|.++... .+...+.++.+ ....+-.-....|.++ +| .+...|.+|.. ...|-..+..+.....-+
T Consensus 222 sdnr~y~vvy~e-gvlivd~s~~s--sp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~ss~ 296 (370)
T COG5276 222 SDNRAYLVVYDE-GVLIVDVSGPS--SPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLSSSL 296 (370)
T ss_pred cCCeeEEEEccc-ceEEEecCCCC--CceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCCchhccc
Confidence 356677776443 34445555531 1122222233445554 65 47889999854 345666666665555444
Q ss_pred ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC--CCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 214 WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN--GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 214 ~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d--G~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
.....+-.||... .+++|++|.....-|-+.+.. |...++.++. +-+.+.++ .+-+|.+|++..
T Consensus 297 ~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~-----~s~~v~~~--~q~~y~~d~~~g 362 (370)
T COG5276 297 DTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRPGRPTIG-----QSCDVSVD--TQIIYSTDYNGG 362 (370)
T ss_pred cCCCccccceEEe--cCeeEeccCCceEEEeCCChhhcccccCcceEe-----eecceEEE--eeEEEEeecCCC
Confidence 3445577888886 789999994322223222221 1111222222 23445555 347788876543
No 212
>KOG1407|consensus
Probab=71.33 E-value=94 Score=29.38 Aligned_cols=183 Identities=12% Similarity=0.138 Sum_probs=114.4
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..+....++|...+.+|- +...++++..+++++... ...... ........++-|+.+..++.+-+....|.+-+..
T Consensus 19 ~~~~v~Sv~wn~~g~~la-sgs~dktv~v~n~e~~r~--~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLA-SGSFDKTVSVWNLERDRF--RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhcceEEEEcccCceee-ecccCCceEEEEecchhh--hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 345678889988887765 344677888888886521 112222 2234678899999999999999999999999987
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-CcCceeEEEeccccEEEEeccc
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD~~ 284 (395)
...+...+.....+ .-|+-.|..+++-+.+ ....|.-++.. +.++..... ...-|.++.. ..+.+|+...+
T Consensus 96 ~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~--kdD~it~id~r----~~~~~~~~~~~~e~ne~~w~-~~nd~Fflt~G 167 (313)
T KOG1407|consen 96 SGKCTARIETKGEN-INITWSPDGEYIAVGN--KDDRITFIDAR----TYKIVNEEQFKFEVNEISWN-NSNDLFFLTNG 167 (313)
T ss_pred cCcEEEEeeccCcc-eEEEEcCCCCEEEEec--CcccEEEEEec----ccceeehhcccceeeeeeec-CCCCEEEEecC
Confidence 77776655333333 2355666666665544 12334443332 222232222 2245667777 66778898888
Q ss_pred eeeeeeeccccceeee----eeeceeeeeeeeccCCcccc
Q psy13629 285 LTFIEVMDYDGYVRLV----TSLGHINLELYCNVFPKTCE 320 (395)
Q Consensus 285 ~~~I~~~~~dG~~~~~----t~~g~~~i~Lf~d~ap~t~~ 320 (395)
.+.|+...+-.-.++. .+.+.+.|++.++--..+++
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeec
Confidence 8999888887666555 22334566666654444433
No 213
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=69.66 E-value=2.5 Score=23.31 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=10.6
Q ss_pred CceeeeecCCCCCc
Q psy13629 1 MALLHFQIPQYRPE 14 (395)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (395)
|.+||||+-+|-=.
T Consensus 1 mnilhicvtskwfn 14 (24)
T PF08053_consen 1 MNILHICVTSKWFN 14 (24)
T ss_pred CceEEEEEeeeeEe
Confidence 67899999887433
No 214
>KOG0282|consensus
Probab=69.46 E-value=60 Score=33.00 Aligned_cols=178 Identities=7% Similarity=-0.024 Sum_probs=98.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+..|... +....-...-..+..+-|++.+.++|.+...+++|..+++..+. ...-....+.....|.+=. .+.
T Consensus 281 ~lKlwDtET-G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~-~g~ 355 (503)
T KOG0282|consen 281 FLKLWDTET-GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVD-EGR 355 (503)
T ss_pred eeeeecccc-ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEcc-CCc
Confidence 556666665 55555566667789999999999999999999999999998752 1112223455666666644 444
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEE-ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC-CcceEEEEecC--Cc
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD-PRHRKVIVDST--IF 264 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~-~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~-~~~~~~lv~~~--~~ 264 (395)
=|++.+....+.+-...-......+ ......-..|++.|..++ +.+. .-..+|......-. ..+++-.+..+ -+
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-~~aQ-s~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-FAAQ-SMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-ehhh-ccCceEEEEecccccccCHhhhhcceeccC
Confidence 4556666666666554433322222 233444557888885543 3333 21233333332210 01111111111 23
Q ss_pred CceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 265 WPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
++..+.+.++++.|.-.|+. +++..-+.+
T Consensus 434 ys~~v~fSpDG~~l~SGdsd-G~v~~wdwk 462 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSD-GKVNFWDWK 462 (503)
T ss_pred ceeeEEEcCCCCeEEeecCC-ccEEEeech
Confidence 56666666666666655542 344444433
No 215
>KOG0286|consensus
Probab=69.18 E-value=1.1e+02 Score=29.35 Aligned_cols=151 Identities=8% Similarity=0.046 Sum_probs=95.9
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
....-|-. .++| .+..++.+.--.+++.. .............-+|++-+.+.+.|++-.-......-|+....+.
T Consensus 148 lScC~f~d-D~~i-lT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 148 LSCCRFLD-DNHI-LTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV 222 (343)
T ss_pred eEEEEEcC-CCce-EecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence 33444543 3333 35556677777777765 3445555666778899999889999999888888888888777776
Q ss_pred EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE-EEec--CCcCceeEEEeccccEEEEeccceee
Q psy13629 211 VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV-IVDS--TIFWPNGIAIDFNNRLLYWIDGRLTF 287 (395)
Q Consensus 211 ~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~-lv~~--~~~~P~glalD~~~~rLYwaD~~~~~ 287 (395)
.-+...-...+.+.+.| +|.-|.|- ++.......++-. .+++ .++. .+.-.+++++. ..+||.++-.....
T Consensus 223 qtF~ghesDINsv~ffP-~G~afatG-SDD~tcRlyDlRa---D~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFP-SGDAFATG-SDDATCRLYDLRA---DQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFT 296 (343)
T ss_pred EeecccccccceEEEcc-CCCeeeec-CCCceeEEEeecC---CcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCc
Confidence 66656677789999998 66777775 3333444444432 2222 2222 23446778888 45666666555555
Q ss_pred eeeec
Q psy13629 288 IEVMD 292 (395)
Q Consensus 288 I~~~~ 292 (395)
+.+=|
T Consensus 297 c~vWD 301 (343)
T KOG0286|consen 297 CNVWD 301 (343)
T ss_pred eeEee
Confidence 55544
No 216
>KOG0308|consensus
Probab=68.97 E-value=1.3e+02 Score=32.01 Aligned_cols=126 Identities=9% Similarity=0.012 Sum_probs=85.5
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
....+++|-.. ++.++++....+.|..++.... .+..-+.+.-.+...|-++..+..+- +.+..+.|.+-+|.-.
T Consensus 171 k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~---~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC---KKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ 245 (735)
T ss_pred ccceeeeecCC-cceEEEecCcccceEEeccccc---cceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc
Confidence 44667787654 4578888766777777776643 22233334456788899988766664 6677899999999887
Q ss_pred ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 208 ~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
.+..-+...-....++..+|.-..+|..+ ....|+|.++... ...+.+...
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~--rd~~i~~Tdl~n~-~~~tlick~ 296 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGG--RDGNIYRTDLRNP-AKSTLICKE 296 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecC--CCCcEEecccCCc-hhheEeecC
Confidence 77643323334488999999999999766 3567999999763 334444443
No 217
>KOG0306|consensus
Probab=68.90 E-value=1.8e+02 Score=31.60 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=99.5
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
+....+.++.++|+++.|-++ .-++++..+.+|.-+ ..-.+.-+.+ -...|.+.+ ..++-.|-+....|.+-.+|
T Consensus 506 el~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDtlK--FflsLYGHkL-PV~smDIS~-DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDTLK--FFLSLYGHKL-PVLSMDISP-DSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eccccEEEEEEcCCCcEEEEE-eccCeEEEEEeccee--eeeeeccccc-ceeEEeccC-CcCeEEeccCCCceEEeccc
Confidence 345578899999988776655 467899999998642 1122222222 133455555 45677788888888888888
Q ss_pred CCceE-EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 206 GKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 206 g~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
-..|. .++ ........+.+-| ..++|||. |...+|.+.+-+- -..-.....+......+++.+. |+..++.+.
T Consensus 581 FGDCHKS~f-AHdDSvm~V~F~P-~~~~FFt~-gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~-G~~vvs~sh 654 (888)
T KOG0306|consen 581 FGDCHKSFF-AHDDSVMSVQFLP-KTHLFFTC-GKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPN-GSFVVSSSH 654 (888)
T ss_pred cchhhhhhh-cccCceeEEEEcc-cceeEEEe-cCcceEEeechhh--hhhheeeccchheeeeeEEcCC-CCeEEeccC
Confidence 65554 455 4456678888998 66899998 7677777765443 3333334445556677888744 444555555
Q ss_pred eeeeeeec
Q psy13629 285 LTFIEVMD 292 (395)
Q Consensus 285 ~~~I~~~~ 292 (395)
++.|..-.
T Consensus 655 D~sIRlwE 662 (888)
T KOG0306|consen 655 DKSIRLWE 662 (888)
T ss_pred CceeEeee
Confidence 56664433
No 218
>KOG4532|consensus
Probab=68.58 E-value=1.1e+02 Score=29.08 Aligned_cols=143 Identities=8% Similarity=0.031 Sum_probs=77.9
Q ss_pred EEEEEeeCCCCCc-cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~-~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
|+++++.+++... .....++ -....++++++.+.+-..+ ..++|.++.+|..+ +...-+......-.|....|..
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~s--ey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQN-LTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDES--EYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred cceeEEEEecCcccceeeccc-cceeeeEEcCCCceEEEec-CCCcceEEEeCCcc--ceeeeeEecccCCCceeeeecc
Confidence 6888888877333 3333333 3378889998887666554 67889999998753 1111122233445566666665
Q ss_pred CeEEEE-eCCCCeEEEEECCCCc--eEEEEecCCCCc----eeEEEeCC--CCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 187 EKLYWT-DSETNKLEVSSLDGKK--RKVLYWEDIDQP----RAIALVPQ--DSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 187 ~~LYwt-d~~~~~I~v~~ldg~~--~~~l~~~~~~~P----~~iavdp~--~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
+.+-|+ -..++.+.++|..-.. ....- ..-..| +.+-+.+. -..||+++ + ..++..+++-.. .+.+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sE-h-fs~~hv~D~R~~-~~~q~ 289 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISE-H-FSRVHVVDTRNY-VNHQV 289 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEec-C-cceEEEEEcccC-ceeeE
Confidence 554443 3445555555543211 11111 111112 33444432 23788887 4 677888888543 34443
Q ss_pred E
Q psy13629 258 I 258 (395)
Q Consensus 258 l 258 (395)
+
T Consensus 290 I 290 (344)
T KOG4532|consen 290 I 290 (344)
T ss_pred E
Confidence 3
No 219
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.27 E-value=89 Score=27.91 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCEEEEEECCCCeEEEEEc-cCCCCCceEEEEeC-----CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE
Q psy13629 139 KKSMVCWTDHGTEMISCCTF-DGNNVGSKHNVITN-----GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 212 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~-dg~~~~~~~~i~~~-----~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l 212 (395)
.++.||+.. .++.|+.++. +|. ..-..... ....+...+++ ++.+|.... .+.|..+++......--
T Consensus 75 ~~~~v~v~~-~~~~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 75 DGGRVYVGT-SDGSLYALDAKTGK---VLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWK 147 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSC---EEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEE
T ss_pred ccccccccc-ceeeeEecccCCcc---eeeeeccccccccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEE
Confidence 467788777 4558888884 443 11221111 12334556665 777887775 67899999765444322
Q ss_pred EecCC---CC--------ceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 213 YWEDI---DQ--------PRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 213 ~~~~~---~~--------P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
..... .. ...+.++ ++.+|.+. . ..++...+... .++.. ......+.++ ....++.||+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~-~g~~~~~d~~t---g~~~w-~~~~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSS-G-DGRVVAVDLAT---GEKLW-SKPISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECC--TTEEEEEC-C-TSSEEEEETTT---TEEEE-EECSS-ECEC-EECCCTEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEE--CCEEEEEc-C-CCeEEEEECCC---CCEEE-EecCCCccCC-ceeeCCEEEEE
Confidence 21111 11 1223333 56999887 3 22344456654 33333 3333344442 23468999999
Q ss_pred ccceeeeeeeccccceee
Q psy13629 282 DGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 282 D~~~~~I~~~~~dG~~~~ 299 (395)
+ ..++|..+++....+.
T Consensus 219 ~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 S-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp E-TTTEEEEEETTTTEEE
T ss_pred e-CCCEEEEEECCCCCEE
Confidence 9 6788988887766554
No 220
>KOG0306|consensus
Probab=67.54 E-value=62 Score=34.84 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=83.5
Q ss_pred cccccCCCCcee------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE
Q psy13629 96 SFEKLQPDGAYL------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169 (395)
Q Consensus 96 ~~~~~~~~~~~~------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i 169 (395)
-|...+||+.|+ ..++++-++.=.-+.-+....-....|+.+++++ +..|...++.|...-+|=+. ....+
T Consensus 512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD--CHKS~ 588 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD--CHKSF 588 (888)
T ss_pred EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch--hhhhh
Confidence 334567777776 3677777766222223333333467888888765 55677677777777776221 22222
Q ss_pred EeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 170 ~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+. .-.+...+-+-+ ..++|||-+..+.|...|-+.-.....+.......+.+|+.|.+++++-+
T Consensus 589 fA-HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 589 FA-HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred hc-ccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 22 223455666666 66889999888888877655444434444557789999999988877643
No 221
>KOG0289|consensus
Probab=67.01 E-value=1.5e+02 Score=30.01 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=80.9
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
.+.+..+-|++....+. ++..+..|+......+ ....+....-...+++.+.+.+..+-|++.. +.+.-.+....
T Consensus 261 ~kki~~v~~~~~~~~v~-~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g 335 (506)
T KOG0289|consen 261 TKKITSVKFHKDLDTVI-TASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEYLLSASND-GTWAFSDISSG 335 (506)
T ss_pred ceEEEEEEeccchhhee-ecCCcceEEeeccccc---cCccccccccccceeeeeccCCcEEEEecCC-ceEEEEEccCC
Confidence 44455555655544333 2323334444443332 2223333333456899999988899888754 44554555444
Q ss_pred ceEEEEec--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 208 KRKVLYWE--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 208 ~~~~l~~~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...+.+.. ....-...+++| .|.||-+- .....+...++.. .....-+..+-+-...+++. .+|+-..+.+..
T Consensus 336 ~~lt~vs~~~s~v~~ts~~fHp-DgLifgtg-t~d~~vkiwdlks--~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add 410 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYTSAAFHP-DGLIFGTG-TPDGVVKIWDLKS--QTNVAKFPGHTGPVKAISFS-ENGYWLATAADD 410 (506)
T ss_pred cEEEEEeeccccceeEEeeEcC-CceEEecc-CCCceEEEEEcCC--ccccccCCCCCCceeEEEec-cCceEEEEEecC
Confidence 44443333 334577889998 67888765 2344555555543 12212222233334455555 344322233344
Q ss_pred eeeeeeccccc
Q psy13629 286 TFIEVMDYDGY 296 (395)
Q Consensus 286 ~~I~~~~~dG~ 296 (395)
..|..-|+...
T Consensus 411 ~~V~lwDLRKl 421 (506)
T KOG0289|consen 411 GSVKLWDLRKL 421 (506)
T ss_pred CeEEEEEehhh
Confidence 44655555543
No 222
>PRK09806 tryptophanase leader peptide; Provisional
Probab=66.07 E-value=3.3 Score=23.32 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=10.1
Q ss_pred CceeeeecCCCCC
Q psy13629 1 MALLHFQIPQYRP 13 (395)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (395)
|.+||||+-+|-=
T Consensus 1 mnilhicvtskwf 13 (26)
T PRK09806 1 MNILHICVTSKWF 13 (26)
T ss_pred CcEEEEEEeeeEE
Confidence 6789999887743
No 223
>KOG0307|consensus
Probab=65.82 E-value=31 Score=38.51 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=102.3
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceE-EEecC--CCeEEEEeCCCCeEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL-AIDWL--TEKLYWTDSETNKLEVS 202 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl-AVD~~--~~~LYwtd~~~~~I~v~ 202 (395)
...+.+.||+|...++.+..++.+++.|+..+++.... . ........|..| .+.|. -.+|+.+-..++++.+-
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t---P-~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET---P-FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC---C-CCCCCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 35678899999999999999999999999999997521 1 111122233332 23342 23556555667788888
Q ss_pred ECCCCceEEEEecC--CCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEE
Q psy13629 203 SLDGKKRKVLYWED--IDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 203 ~ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rL 278 (395)
|+..+...+-++.. -....+|+-+|..-.--|+..+ ..+.|...++--..+-.+++ ..+-...-+|.....+.++
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchh
Confidence 88777433333211 1235578888876665555433 35667777754321233333 2232233334444455678
Q ss_pred EEeccceeeeeeeccccceeee
Q psy13629 279 YWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~~~~~ 300 (395)
..+..++++|.+-+.+...+.-
T Consensus 269 llSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred hhcccCCCCeeEecCCCceEee
Confidence 8888888888887776654443
No 224
>KOG0293|consensus
Probab=65.39 E-value=70 Score=32.06 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=75.6
Q ss_pred EEEEeeCCCCCccEEecCC-CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~-~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.++.-|.+.+........+ .-++...+|-+++.+ +++...++.|...++||.-+...+-+- .....+||+.+.+.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr---~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR---DPKVHDLAITYDGK 367 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc---cceeEEEEEcCCCc
Confidence 3455555552222222222 245677889888766 667778899999999997332222221 24567899999888
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.+|-.+ ...+|..++...+..+-++ +.-.-...+.++.++ ++...+
T Consensus 368 ~vl~v~-~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~-k~~Lvn 413 (519)
T KOG0293|consen 368 YVLLVT-VDKKIRLYNREARVDRGLI-SEEQPITSFSISKDG-KLALVN 413 (519)
T ss_pred EEEEEe-cccceeeechhhhhhhccc-cccCceeEEEEcCCC-cEEEEE
Confidence 888777 4567888888777666555 333445677777544 444433
No 225
>KOG0649|consensus
Probab=65.26 E-value=1.2e+02 Score=28.39 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
..+.+++|-.||.++.|+.+. +++.|+.++++.+ ..+......-.....++-...++.|+ +-.+.+++.+-++..
T Consensus 113 evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG---RIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKT 187 (325)
T ss_pred cCCccceeEeccCCCcEEEec-CCeEEEEEEecCC---EEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccc
Confidence 456789999999999999887 8899999999865 34445555555666777655566664 777888899989887
Q ss_pred CceEEEEecCCCCc-----------eeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEE-Eecc
Q psy13629 207 KKRKVLYWEDIDQP-----------RAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIA-IDFN 274 (395)
Q Consensus 207 ~~~~~l~~~~~~~P-----------~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gla-lD~~ 274 (395)
..+...+ +...+| .+++++ +.+| -.|..++....++.. +..+.++.- |--.- +|..
T Consensus 188 ~k~v~~i-e~yk~~~~lRp~~g~wigala~~--edWl---vCGgGp~lslwhLrs--se~t~vfpi----pa~v~~v~F~ 255 (325)
T KOG0649|consen 188 QKHVSMI-EPYKNPNLLRPDWGKWIGALAVN--EDWL---VCGGGPKLSLWHLRS--SESTCVFPI----PARVHLVDFV 255 (325)
T ss_pred cceeEEe-ccccChhhcCcccCceeEEEecc--CceE---EecCCCceeEEeccC--CCceEEEec----ccceeEeeee
Confidence 7766655 333333 334443 4443 235677888888876 444444332 22222 3322
Q ss_pred ccEEEEeccceeeeeeeccccceeee
Q psy13629 275 NRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 275 ~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
++ +..+-...+.|.+-.++|.....
T Consensus 256 ~d-~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 256 DD-CVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred cc-eEEEeccccceeeeeeccEEEEe
Confidence 33 44454446777777888866554
No 226
>KOG0294|consensus
Probab=65.09 E-value=1.4e+02 Score=28.99 Aligned_cols=143 Identities=8% Similarity=-0.067 Sum_probs=80.3
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC--eEEEEeCCCCeEEEEECC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE--KLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~--~LYwtd~~~~~I~v~~ld 205 (395)
.....++|++ +.-..+...+.+|+.+++.... +...+ .......+.|-.+...- +| .+-..++.|.+.+.+
T Consensus 43 ~~sitavAVs---~~~~aSGssDetI~IYDm~k~~--qlg~l-l~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 43 AGSITALAVS---GPYVASGSSDETIHIYDMRKRK--QLGIL-LSHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVG 115 (362)
T ss_pred ccceeEEEec---ceeEeccCCCCcEEEEeccchh--hhcce-eccccceEEEEecCCcchhhe-eeecCCCcEEEEEcC
Confidence 3566778876 3344556678899999998752 22233 33355677777765442 33 244556777777754
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
.=...--+...-.+.++|+++| .++|-.+- ++...+...++-- .|..++..--..+.-+..+..+++.|+.-
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHP-S~KLALsV-g~D~~lr~WNLV~---Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHP-SGKLALSV-GGDQVLRTWNLVR---GRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred CeEEeeeecccccccceeEecC-CCceEEEE-cCCceeeeehhhc---CccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 3222222223345599999999 55676666 4345555555532 23233332222455566666666555554
No 227
>KOG0299|consensus
Probab=64.87 E-value=1.7e+02 Score=29.79 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=102.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.+++.-............+.+|+.-..++.+-+. ..+.++..+.+.. +.+-+....-.++..++. ++..
T Consensus 267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVG-grDrT~rlwKi~e----esqlifrg~~~sidcv~~--In~~ 339 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVG-GRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAF--INDE 339 (479)
T ss_pred ceEEEehhHhHHHHHHhCCccceeeechhcccceEEec-cccceeEEEeccc----cceeeeeCCCCCeeeEEE--eccc
Confidence 56666665423333444556667788776666665544 3556666666543 224455555567887776 5777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEe--cC-------C---CCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYW--ED-------I---DQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~--~~-------~---~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~ 256 (395)
-|++-+.++.|..-++-.+...-... .. . .+.++||+-|....+--..|.+.-+++.+.-+- ....
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~--r~i~ 417 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL--RAIN 417 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc--cccc
Confidence 78888889999888876654322111 11 1 156788888866555444444455555544321 2233
Q ss_pred EEEec-CCcCceeEEEeccccEEEEeccceeee
Q psy13629 257 VIVDS-TIFWPNGIAIDFNNRLLYWIDGRLTFI 288 (395)
Q Consensus 257 ~lv~~-~~~~P~glalD~~~~rLYwaD~~~~~I 288 (395)
++..- -.++.|+|++..++++|+..-.+.+++
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence 33332 245789999888888898887766665
No 228
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.62 E-value=1.6e+02 Score=28.49 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=43.9
Q ss_pred EEecCCCeEEEEe----CCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEeeC
Q psy13629 181 AIDWLTEKLYWTD----SETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 181 AVD~~~~~LYwtd----~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~ 238 (395)
++...++.||-|+ ...+.|.|++.....++ --+....--|..|.+.|+...|-+++-|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 4556688999886 45689999999954444 3344567789999999988899999833
No 229
>KOG3545|consensus
Probab=60.91 E-value=1.4e+02 Score=27.80 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCc----------ceEEEecCCC--eEEEEeCCCCeEEEEECCCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP----------DGLAIDWLTE--KLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p----------~glAVD~~~~--~LYwtd~~~~~I~v~~ldg~ 207 (395)
++-+|.-......|.+++++.........+...+...+ -++|||. .| -||-|+...+.|.++.||-.
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE-~GLWviYat~~~~g~iv~skLdp~ 155 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDE-NGLWVIYATPENAGTIVLSKLDPE 155 (249)
T ss_pred cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecc-cceeEEecccccCCcEEeeccCHH
Confidence 45677766677788888888631111112222233444 6899996 44 46777888889998999874
Q ss_pred ceEEEEe--cC---CCCceeEEEeCCCCeEEEEeeC--CCCeE-EEEecCCCCcceE--EEEecCCcCceeEEEeccccE
Q psy13629 208 KRKVLYW--ED---IDQPRAIALVPQDSIMFWTDWG--EVPKI-ERGAMNGDPRHRK--VIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 208 ~~~~l~~--~~---~~~P~~iavdp~~g~LYwtd~~--~~~~I-~~~~~dG~~~~~~--~lv~~~~~~P~glalD~~~~r 277 (395)
..++--. .. -.--.++.+. |.||..+.. ....| +..+...+ ..+. +.+....+.-..+--.+.+.+
T Consensus 156 tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~~~-~~~~~~ipf~N~y~~~~~idYNP~D~~ 231 (249)
T KOG3545|consen 156 TLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTTTG-TQERIDLPFPNPYSYATMIDYNPRDRR 231 (249)
T ss_pred HhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcCCC-ceecccccccchhhhhhccCCCcccce
Confidence 3332211 11 2233556664 689998854 22334 34444421 1111 111111222223333456788
Q ss_pred EEEeccc
Q psy13629 278 LYWIDGR 284 (395)
Q Consensus 278 LYwaD~~ 284 (395)
||.=|-+
T Consensus 232 LY~wdng 238 (249)
T KOG3545|consen 232 LYAWDNG 238 (249)
T ss_pred eeEecCC
Confidence 9877743
No 230
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=60.52 E-value=93 Score=32.60 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCCcceEEEecCCCeEEEEeCCC----------------CeEEEEECCCC-------ceEEEEec---------------
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSET----------------NKLEVSSLDGK-------KRKVLYWE--------------- 215 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~~----------------~~I~v~~ldg~-------~~~~l~~~--------------- 215 (395)
+.+|++|++.+.++.+|++...+ ++|.+.-..+. .-..++..
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 46899999999999999997433 36777766553 11112110
Q ss_pred --CCCCceeEEEeCCCCeEEEEe
Q psy13629 216 --DIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 216 --~~~~P~~iavdp~~g~LYwtd 236 (395)
.+..|-+|++||..+..--||
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TD 518 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTD 518 (616)
T ss_pred cccccCCCceEECCCCCEEEEec
Confidence 145599999999554444445
No 231
>KOG0277|consensus
Probab=59.55 E-value=1.6e+02 Score=27.81 Aligned_cols=157 Identities=9% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec--CCCeEEEEeCCCCeEEEEECCC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW--LTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~--~~~~LYwtd~~~~~I~v~~ldg 206 (395)
..-.+++|......+..+-.+++.++.+++.-.. ....+..+ ..-+=.+||| ..+..+.+.+..++|..-+++-
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kE--H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPIHKFKE--HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCC--cchhHHHh--hhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 3455566655554444444455555555533221 10111111 1223345555 4567788888888888887765
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCceeEEEe--ccccEEEEecc
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID--FNNRLLYWIDG 283 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD--~~~~rLYwaD~ 283 (395)
........+.-.-.++.+.+|....||-+..+ ..-++.-++..| .... +..+ .-.-+..| ..+.++..+-.
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--k~~~--i~ah--~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--KFMS--IEAH--NSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--ceeE--EEec--cceeEeecccccCCcEEEecC
Confidence 55444443555667888899999999888765 345677766666 3332 2222 12234445 35566766766
Q ss_pred ceeeeeeecccc
Q psy13629 284 RLTFIEVMDYDG 295 (395)
Q Consensus 284 ~~~~I~~~~~dG 295 (395)
.++.|..-|+..
T Consensus 211 vd~~vr~wDir~ 222 (311)
T KOG0277|consen 211 VDNLVRGWDIRN 222 (311)
T ss_pred CCceEEEEehhh
Confidence 667676655543
No 232
>KOG0882|consensus
Probab=59.07 E-value=14 Score=37.24 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEec
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIR 341 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~ 341 (395)
+...+|+|.+...-+-.-|.......++ .+.+++|....|.-++-|.+.|+.+|+++..+.++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s---------------~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKIS---------------LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK 149 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeee---------------eEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence 3445888888777777777765555443 3678888889999999999999999999999999999
Q ss_pred CcEEEecCCC
Q psy13629 342 NFMIQGGDPT 351 (395)
Q Consensus 342 ~~~iq~g~~~ 351 (395)
.+.+|.||..
T Consensus 150 i~y~qa~Ds~ 159 (558)
T KOG0882|consen 150 IRYNQAGDSA 159 (558)
T ss_pred EEeeccccce
Confidence 9999998853
No 233
>KOG0277|consensus
Probab=58.95 E-value=1.6e+02 Score=27.75 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred EEEEeeCCCCCc-cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~-~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.++++++..... .....+....+.++++....+..+.+..-+++|.-...+-.+ ...+ ..+.-.-.-+.+..+...
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~T-f~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQT-FNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEe-ecCCccEEEEEecCCCCC
Confidence 567777655333 334566777899999999999999998778888887776432 2222 222223355666777788
Q ss_pred eEEEEeCCCCeEEEEECC
Q psy13629 188 KLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ld 205 (395)
+|+-+-++++....-|++
T Consensus 161 nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVR 178 (311)
T ss_pred CeEEEccCCceEEEEEec
Confidence 888877777765555543
No 234
>KOG0284|consensus
Probab=58.73 E-value=64 Score=32.23 Aligned_cols=115 Identities=9% Similarity=0.006 Sum_probs=78.2
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
.-..+.++.|...+..+.=.| ..+.|...+.+-+ ....+-...-...+++|+.+ +..-|.+-++.++|.+-+..-
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD-~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGD-KGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hcccceeEEEccCCCEEEEcC-CCceEEecccchh---hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccC
Confidence 445567888887776555444 5667776666654 22222223336789999998 888899999999999998766
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
...+.++....-.++.+.=+|..|.|+.. ++..-|...+.
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasg--skDnlVKlWDp 251 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASG--SKDNLVKLWDP 251 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEc--cCCceeEeecC
Confidence 55555555667789999999998888643 22234444444
No 235
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=57.63 E-value=8.5 Score=24.73 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.7
Q ss_pred CceeEEEeccccEEEEecc
Q psy13629 265 WPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~ 283 (395)
.|++|++| ..+++|++=.
T Consensus 14 ~~~~IavD-~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVD-SNGNIYVTGY 31 (38)
T ss_pred eEEEEEEC-CCCCEEEEEe
Confidence 59999999 6677999853
No 236
>KOG0322|consensus
Probab=55.89 E-value=59 Score=30.74 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=64.3
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC--CCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN--VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~--~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
....+.+..++|+...++= .++....++..++++-+. +.-+..+ .-.-....|+.|.+ .++|+.|-...++|.|+
T Consensus 202 ash~qpvlsldyas~~~rG-isgga~dkl~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRp-D~KIlATAGWD~RiRVy 278 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRG-ISGGADDKLVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRP-DGKILATAGWDHRIRVY 278 (323)
T ss_pred hhccCcceeeeechhhcCC-cCCCccccceeeeeccccCcccccceE-EecCCCccceEEcc-CCcEEeecccCCcEEEE
Confidence 3445566778887543221 112223456666665331 1111111 11223567889986 78999999999999999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeE
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIM 232 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~L 232 (395)
+-.......++.-.-...+++|++|..+.|
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 987776665554444678899999875544
No 237
>KOG0973|consensus
Probab=55.70 E-value=2.8e+02 Score=31.01 Aligned_cols=87 Identities=7% Similarity=-0.055 Sum_probs=61.0
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+......+..+.|++ .+.+..+-..+++|..++...- ....++......+-|+++|+.++.+ .+.+...+|.+.+
T Consensus 125 l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwr 199 (942)
T KOG0973|consen 125 LRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWR 199 (942)
T ss_pred EecCCCccceeccCC-CccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCee-eeecCCceEEEEE
Confidence 344555677888998 5567777777888888877654 4455666667789999999976544 5667788888888
Q ss_pred CCCCceEEEEec
Q psy13629 204 LDGKKRKVLYWE 215 (395)
Q Consensus 204 ldg~~~~~l~~~ 215 (395)
...-.....+.+
T Consensus 200 t~dw~i~k~It~ 211 (942)
T KOG0973|consen 200 TSDWGIEKSITK 211 (942)
T ss_pred cccceeeEeecc
Confidence 655444444433
No 238
>KOG0646|consensus
Probab=54.50 E-value=1.3e+02 Score=30.44 Aligned_cols=99 Identities=18% Similarity=0.002 Sum_probs=64.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCce-------------EEEEeCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK-------------HNVITNGL 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~-------------~~i~~~~~ 174 (395)
+.++..++.. .....-+.-...+.+++.|+.+..+|+.. ..+.|+...+.+...... ........
T Consensus 198 ~t~k~wdlS~-g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 198 RTIKLWDLSL-GVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred ceEEEEEecc-ceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 4778888877 44444445556789999999999999765 788999888776431111 01111222
Q ss_pred --CCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 175 --ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 175 --~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
.....|||.- .+.|-.+-...+.+.+-+...+.+
T Consensus 276 ~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 276 NESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred CCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHH
Confidence 2577788874 566666766777788777766544
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.76 E-value=2.2e+02 Score=27.73 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=49.6
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec-CCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DID 218 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~~~ 218 (395)
++.||.++ ..+.++.++..... .+-..........+++ +++||+++ ..+.+...+.+.....--... ...
T Consensus 241 ~~~vy~~~-~~g~l~a~d~~tG~-----~~W~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 241 GGQVYAVS-YQGRVAALDLRSGR-----VLWKRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CCEEEEEE-cCCEEEEEECCCCc-----EEEeeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEccccccCC
Confidence 45666655 34566666664321 1111112334455564 68899886 467888888854432211100 011
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
.....++ .+++||..+ . ...|+..+.+
T Consensus 312 ~~ssp~i--~g~~l~~~~-~-~G~l~~~d~~ 338 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGD-F-EGYLHWLSRE 338 (377)
T ss_pred ccccCEE--ECCEEEEEe-C-CCEEEEEECC
Confidence 1112223 256888876 2 4567777764
No 240
>KOG1445|consensus
Probab=53.60 E-value=1.9e+02 Score=30.91 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=40.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 161 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~ 161 (395)
.|+..|+.....+.-+......+.++||++.++++- +=..+++|+++....+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A-tVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA-TVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCccee-eeecCceEEEeCCCCC
Confidence 777778776455667778889999999999888765 3347888988887764
No 241
>KOG0650|consensus
Probab=53.39 E-value=37 Score=35.54 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecc
Q psy13629 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFN 274 (395)
Q Consensus 195 ~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~ 274 (395)
.+.+|.+.+|.-.....-+...-..|....++|..-+||++. ...|...++.-.....+.+ ++..|...|+|+..
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~--tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLL--TGSKWISSMSIHPN 618 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHh--cCCeeeeeeeecCC
Confidence 344555555543333222223356788999999999999988 4445555654311111111 34558888888887
Q ss_pred ccEEEEeccceeeeeeeccccc
Q psy13629 275 NRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 275 ~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+++|.... ..+++--.++|=+
T Consensus 619 GDnli~gs-~d~k~~WfDldls 639 (733)
T KOG0650|consen 619 GDNLILGS-YDKKMCWFDLDLS 639 (733)
T ss_pred CCeEEEec-CCCeeEEEEcccC
Confidence 77776665 3455555555544
No 242
>KOG3881|consensus
Probab=53.28 E-value=1.4e+02 Score=29.65 Aligned_cols=114 Identities=7% Similarity=-0.034 Sum_probs=64.5
Q ss_pred EEEEEeeCCCCCccEEecCC-CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~-~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~~~~~p~glAVD~~ 185 (395)
|.+|.+|...+.+.+.-.+- -.....+...+.++.||.+| ..+.+..+++.+.. .... ....-.++++|..++.
T Consensus 226 hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred eeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCce---eeccccCCccCCcceEEEcCC
Confidence 46777777664443333332 23345667788899999988 55677777777652 1222 2233468999999985
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp 227 (395)
+..| -+-+-..-+.+.|.+......-+ ---.+++.|.+++
T Consensus 302 ~~~l-as~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 302 HPVL-ASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRD 341 (412)
T ss_pred CceE-EeeccceeEEEeecccchhhhhh-hhhccccEEEecC
Confidence 4444 23333445566666552211100 1134567777654
No 243
>KOG0269|consensus
Probab=52.43 E-value=71 Score=34.47 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=91.5
Q ss_pred EEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCcee
Q psy13629 143 VCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRA 222 (395)
Q Consensus 143 lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~ 222 (395)
+..+-..++.|..++++...-.....++.+.-...+.+.+....-+|-.+-+..+.|...|+.-+........+-...++
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 44444567888888887631001112333444678889999989999999999999999999887777666677888999
Q ss_pred EEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 223 IALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 223 iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
+++.|..++.|.+- .++..+...++-- ..+ ....-.-..--++++|+--.|-|.|-.+
T Consensus 182 V~fsp~~~~~F~s~-~dsG~lqlWDlRq--p~r-~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 182 VKFSPGYGNKFASI-HDSGYLQLWDLRQ--PDR-CEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred eeeccCCCceEEEe-cCCceEEEeeccC--chh-HHHHhhcccCceEEEeecCCCceeeecC
Confidence 99999999998886 4577788888764 211 1111111112245666544555665543
No 244
>KOG0288|consensus
Probab=51.59 E-value=2.7e+02 Score=28.04 Aligned_cols=121 Identities=7% Similarity=0.010 Sum_probs=78.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCC---CCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGL---ITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~---~~p~glAVD~ 184 (395)
.||-+|..+ ...+..++..+...+++....+..|.-+ ..++.+..+++.+. +...... .+. ...+-..+.+
T Consensus 323 kvRfwD~Rs-~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 323 KVRFWDIRS-ADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ceEEEeccC-CceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc---cEEEEeeccccccccccceeEECC
Confidence 566666555 5666777888899999999998888877 57888888888876 2222222 222 1233444444
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCC--ceeEEEeCCCCeEEEE
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ--PRAIALVPQDSIMFWT 235 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~--P~~iavdp~~g~LYwt 235 (395)
++....+-+.+++|++-+..+..++.++.....+ ...++.+|.+..|--+
T Consensus 398 -d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 398 -DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred -CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 3333334566889999999998888777554444 4556666655544433
No 245
>KOG0271|consensus
Probab=51.35 E-value=2.6e+02 Score=27.89 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=88.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCe-EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~-~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.++|..|++. +.......+.+++ ..++|.|++++| .+...++.|...+..... ....-+...-..+.+||-.+.+
T Consensus 137 ~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~i-ASG~~dg~I~lwdpktg~--~~g~~l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 137 TTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKI-ASGSKDGSIRLWDPKTGQ--QIGRALRGHKKWITALAWEPLH 212 (480)
T ss_pred ceEEeeccCC-CCcceeecCCccEEEEEEECCCcchh-hccccCCeEEEecCCCCC--cccccccCcccceeEEeecccc
Confidence 3778888877 4455556666665 578999987755 466678899988866432 1111222223446666654432
Q ss_pred ----CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 187 ----EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 187 ----~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
.+...+.+..+.|.+-+..+..+...+ .+-..|-.++----.|+||=......-+++++. +| .-.+ ....+
T Consensus 213 l~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~-dG--~~~r-~lkGH 287 (480)
T KOG0271|consen 213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL-DG--KLCR-ELKGH 287 (480)
T ss_pred cCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCceEEecCCCceEEEEEcc-ch--hHHH-hhccc
Confidence 134455566788888888877776655 333344444443335677744322223344332 34 2222 22335
Q ss_pred CcCceeEEEe
Q psy13629 263 IFWPNGIAID 272 (395)
Q Consensus 263 ~~~P~glalD 272 (395)
-.|.|.|++.
T Consensus 288 ahwvN~lals 297 (480)
T KOG0271|consen 288 AHWVNHLALS 297 (480)
T ss_pred chheeeeecc
Confidence 5688888775
No 246
>KOG0282|consensus
Probab=51.30 E-value=1.2e+02 Score=30.94 Aligned_cols=148 Identities=9% Similarity=0.047 Sum_probs=95.7
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
..+.+.++.|-+...+|+.+...++.|...++-+.. .........-....+++.... +.=|.+-+....|..-|...
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeecccc
Confidence 456677888999899999999889999988876531 111122222233455555543 33345666677788888877
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
..+..-+ ....-|..+-+.|++..+|.+- +...+|...++.. .....-...+++..+.+++= .+++=|++-
T Consensus 290 G~~~~~f-~~~~~~~cvkf~pd~~n~fl~G-~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~-~~g~rFiss 360 (503)
T KOG0282|consen 290 GQVLSRF-HLDKVPTCVKFHPDNQNIFLVG-GSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFV-DEGRRFISS 360 (503)
T ss_pred ceEEEEE-ecCCCceeeecCCCCCcEEEEe-cCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEc-cCCceEeee
Confidence 7777766 5667799999999998999886 5577888888864 22111122356667777654 233334443
No 247
>KOG0278|consensus
Probab=51.25 E-value=2.2e+02 Score=26.88 Aligned_cols=118 Identities=6% Similarity=0.017 Sum_probs=73.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~~ 187 (395)
+||..|... ...+..+.-...+..+.++.+++.|-.++.+. |.-.+.+.- ..+- ..-.-..+.-.+.+. .
T Consensus 166 tVRLWD~rT-gt~v~sL~~~s~VtSlEvs~dG~ilTia~gss--V~Fwdaksf-----~~lKs~k~P~nV~SASL~P~-k 236 (334)
T KOG0278|consen 166 TVRLWDHRT-GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSS--VKFWDAKSF-----GLLKSYKMPCNVESASLHPK-K 236 (334)
T ss_pred ceEEEEecc-CcEEEEEecCCCCcceeeccCCCEEEEecCce--eEEeccccc-----cceeeccCccccccccccCC-C
Confidence 455555544 44445555556778889998888777776432 222222221 1111 111233455566664 4
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEE-ecCCCCceeEEEeCCCCeEEEEe
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~-~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.+|++-.+...++++|.+........ .....-...+-++| .|.+|-+-
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsG 285 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASG 285 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeecc
Confidence 89999999999999999988777664 33345556777887 67888654
No 248
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=50.87 E-value=1.4e+02 Score=33.18 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE-EecCCCCceeEEEeCCCCeEEE-EeeC---CCCeEEEEecCCCCcc-eEEEE
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIALVPQDSIMFW-TDWG---EVPKIERGAMNGDPRH-RKVIV 259 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l-~~~~~~~P~~iavdp~~g~LYw-td~~---~~~~I~~~~~dG~~~~-~~~lv 259 (395)
++..|.++ .+++|..+|.||...+++ + ..-.....-+++|+.++|=+ +-.. +.+.|++.+++.+.++ .++-|
T Consensus 319 tkiAfv~~-~~~~L~~~D~dG~n~~~ve~-~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 319 AKLAFRND-VTGNLAYIDYTKGASRAVEI-EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eeEEEEEc-CCCeEEEEecCCCCceEEEe-cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 44567776 445999999999988877 5 33333444568898888766 4332 3678999999874444 23333
Q ss_pred ecCCcCceeEEEe-ccccEEEEeccceee
Q psy13629 260 DSTIFWPNGIAID-FNNRLLYWIDGRLTF 287 (395)
Q Consensus 260 ~~~~~~P~glalD-~~~~rLYwaD~~~~~ 287 (395)
.. -.-|.==.+. =+.--+||+|+.+|+
T Consensus 397 e~-aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 397 EN-AAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred cc-ccccceEecCCCCeEEEEEcCCCCCc
Confidence 32 1223211111 012358999988776
No 249
>KOG4649|consensus
Probab=50.70 E-value=2.2e+02 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=14.2
Q ss_pred ceEEEecCCCeEEEEeCCCCeEE
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLE 200 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~ 200 (395)
.=+|||+..|++||-..-..+|+
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE 56 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIE 56 (354)
T ss_pred eEEEecCCCCcEEeehhhCceee
Confidence 34677777777777664444544
No 250
>KOG1985|consensus
Probab=48.22 E-value=11 Score=40.66 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=42.2
Q ss_pred eeeeecccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCC
Q psy13629 40 YPHLIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNS 86 (395)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~ 86 (395)
-+|..|..++.|+|.+.++.|+.++....+...||.|..++.++..+
T Consensus 702 ~~fr~g~~~~lD~R~~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea 748 (887)
T KOG1985|consen 702 PAFRPGTGTRLDYRAYAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEA 748 (887)
T ss_pred CcccCCCCCCchHHHHHHHHhhcCCHHHHHhhhcccceecccccccc
Confidence 57888889999999999999999999999999999999888776644
No 251
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.06 E-value=2e+02 Score=25.54 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=55.5
Q ss_pred CCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE-CCCCceEEEEecC
Q psy13629 139 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS-LDGKKRKVLYWED 216 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~-ldg~~~~~l~~~~ 216 (395)
.++++|..+ ..+.|+.++.+... ..-... ......+ ..++ ++.+|+... .++|..++ .+|+..-......
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~--~~W~~~~~~~~~~~--~~~~--~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGK--VLWRFDLPGPISGA--PVVD--GGRVYVGTS-DGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSE--EEEEEECSSCGGSG--EEEE--TTEEEEEET-TSEEEEEETTTSCEEEEEEE-S
T ss_pred eCCEEEEEc-CCCEEEEEECCCCC--EEEEeeccccccce--eeec--ccccccccc-eeeeEecccCCcceeeeecccc
Confidence 467788886 67788888874321 111111 1222222 2443 788888874 34899999 5555544422111
Q ss_pred -----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 217 -----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 217 -----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
...+...+++ ++.+|.... ...|..+++.
T Consensus 107 ~~~~~~~~~~~~~~~--~~~~~~~~~--~g~l~~~d~~ 140 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVD--GDRLYVGTS--SGKLVALDPK 140 (238)
T ss_dssp SCTCSTB--SEEEEE--TTEEEEEET--CSEEEEEETT
T ss_pred ccccccccccCceEe--cCEEEEEec--cCcEEEEecC
Confidence 2234445554 778887763 5678888865
No 252
>KOG0271|consensus
Probab=47.79 E-value=2.3e+02 Score=28.26 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=69.7
Q ss_pred EEEEeeCCCCCccE-EecCCCCCeEEEEEEcCC----CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPLKPV-TIIKDLEEGAAIDYYYKK----SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~~~-~~~~~~~~~~gl~~d~~~----~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+|+..+.+..+.+- .+....+-+.+|+|.+.. .+.+.+...++.|...+.... .......+-..| =-+|-
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~-VTCvr 254 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTAS-VTCVR 254 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccc-eEEEE
Confidence 77877766534333 344456678899987653 345666667788888888764 222333222221 13567
Q ss_pred cCCCeEEEEeCCCCeEEEEEC-CCCceEEEEecCCCCceeEEEe
Q psy13629 184 WLTEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIALV 226 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~l-dg~~~~~l~~~~~~~P~~iavd 226 (395)
|-+..+.++.+...+|.+.+. +|..++.+- ......+.|+++
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lals 297 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALS 297 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeecc
Confidence 876666668888889988875 455555544 556677777776
No 253
>KOG0313|consensus
Probab=47.74 E-value=3e+02 Score=27.44 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
|.|++.|+.. ..........+....+++.+..+ |..+...+..|...+.......-...-+...-+-..++--.+.+.
T Consensus 281 HTIk~WDlet-g~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~ 358 (423)
T KOG0313|consen 281 HTIKVWDLET-GGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE 358 (423)
T ss_pred ceEEEEEeec-ccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence 7999999877 44455556667889999998554 555665777777777764322112222222234566666666777
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
.++.+-+..+++.+-|..... .--+.|+- .+.+++-.||.+...|.....
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k---------~plydI~~--h~DKvl~vdW~~~~~IvSGGa 408 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTK---------APLYDIAG--HNDKVLSVDWNEGGLIVSGGA 408 (423)
T ss_pred eEEEEEecCCeEEEEEeccCC---------Ccceeecc--CCceEEEEeccCCceEEeccC
Confidence 777777777777776654322 01122222 266777777775545544333
No 254
>PRK13616 lipoprotein LpqB; Provisional
Probab=46.98 E-value=3.8e+02 Score=28.49 Aligned_cols=157 Identities=8% Similarity=-0.051 Sum_probs=82.6
Q ss_pred CCeEEEEEEcCCCEEEEEEC-------CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC-------
Q psy13629 129 EEGAAIDYYYKKSMVCWTDH-------GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS------- 194 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~-------~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~------- 194 (395)
..+...+++++++++.+... ....|+.....+. . ..+.... .-..-..++.++.|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---A-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---c-eeeecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 45667788999988877762 2347787776553 2 3332221 1233345554455554421
Q ss_pred ----CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEE---EecCCCCcceEE----EEecCC
Q psy13629 195 ----ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIER---GAMNGDPRHRKV----IVDSTI 263 (395)
Q Consensus 195 ----~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~---~~~dG~~~~~~~----lv~~~~ 263 (395)
..+.|.+..+++..... .....+..+.++|+..+|.+.- + .+|+. ...++ ...++ -+...+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~--g~v~Va~Vvr~~~--G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-G--GKVYLAVVEQTED--GQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-C--CEEEEEEEEeCCC--CceeecccEEeeccc
Confidence 23455555555543322 1123588999999999888765 2 46666 33333 12222 011222
Q ss_pred cC-ceeEEEeccccEEEEecc-ceeeeeeeccccceeee
Q psy13629 264 FW-PNGIAIDFNNRLLYWIDG-RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~-P~glalD~~~~rLYwaD~-~~~~I~~~~~dG~~~~~ 300 (395)
.. +..+.-- .++.|++.-. ....++.+++||.....
T Consensus 496 ~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 496 GDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred CCccccceEe-cCCEEEEEecCCCCceEEEecCCccccc
Confidence 22 2333322 3445666533 23457788888876544
No 255
>KOG2321|consensus
Probab=46.83 E-value=3.7e+02 Score=28.34 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=64.0
Q ss_pred CccCcccccccCCC---CceeEEEEEeeCCC--CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC
Q psy13629 90 PVQERCSFEKLQPD---GAYLLDIRIANLSR--PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG 164 (395)
Q Consensus 90 ~~~~~C~~~~~~~~---~~~~~~I~~~~l~~--~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~ 164 (395)
.++....++.++-| ..+++.=|.|.+.. +..+..-++-.+ ..|.|+....-||... ....|+|.+++.+...
T Consensus 92 lDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G--RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 92 LDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG--RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFL 168 (703)
T ss_pred ccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCC--ccccccCCCccEEEee-cCcceEEEEccccccc
Confidence 33344444444433 33344334444443 233444444443 5688888888899887 5678999999976321
Q ss_pred ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 165 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 165 ~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
+ -+.......+.+.+...++.| .+-...+.++-.|+..+.+.
T Consensus 169 ~---P~~~~~~~lN~v~in~~hgLl-a~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 169 N---PFETDSGELNVVSINEEHGLL-ACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred c---ccccccccceeeeecCccceE-EecccCceEEEecchhhhhh
Confidence 1 111222445667777766655 34445667777766655443
No 256
>KOG0973|consensus
Probab=46.12 E-value=3.3e+02 Score=30.55 Aligned_cols=110 Identities=6% Similarity=-0.039 Sum_probs=71.6
Q ss_pred EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc--------CCCC--Cc-----eEEEEeCCCCCcceEEEecCC
Q psy13629 122 VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD--------GNNV--GS-----KHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 122 ~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d--------g~~~--~~-----~~~i~~~~~~~p~glAVD~~~ 186 (395)
.......+....+-|.+++..|+. ...++.|.....+ |+.. .+ ...++...-....+++-++ +
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAs-GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~ 140 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLAS-GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-D 140 (942)
T ss_pred eeeccccCceeEEEECCCCCeEee-ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-C
Confidence 344556677788889988877664 3355555555555 1100 00 1112222334566677776 6
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEE
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF 233 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LY 233 (395)
+.+..+-+..++|.+.+...-.+..++......+.|+++||.++++-
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~A 187 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFA 187 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeee
Confidence 77777778889999999887766666656678899999999887653
No 257
>KOG2096|consensus
Probab=44.64 E-value=3.1e+02 Score=26.78 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=80.0
Q ss_pred cccCCCCceeE------EEEEeeCCC--CCccEEe--cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC--Cc
Q psy13629 98 EKLQPDGAYLL------DIRIANLSR--PLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV--GS 165 (395)
Q Consensus 98 ~~~~~~~~~~~------~I~~~~l~~--~~~~~~~--~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~--~~ 165 (395)
..-+.|+.++. .|++.+++. ......+ --...+|..+.|.++-+.+.++=...++++.+.++...- ..
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~ 171 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS 171 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC
Confidence 34555666663 667777765 1111222 224568999999998877666655778888887753210 01
Q ss_pred eEEEEeCCC-----CCcceEEEecCCCeEEE-EeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC
Q psy13629 166 KHNVITNGL-----ITPDGLAIDWLTEKLYW-TDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 166 ~~~i~~~~~-----~~p~glAVD~~~~~LYw-td~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~ 238 (395)
...+..+.+ .+..=|.+--.++-.|. +-+....|...++.|.....+- .+..+-+..|++|..++|-.+-..
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id-tnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec-cccccccceeeCCCCcEEEEecCC
Confidence 111221211 11111222222333443 4456678888898877665554 556667889999988888766543
No 258
>KOG1408|consensus
Probab=43.27 E-value=3.6e+02 Score=29.34 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=59.5
Q ss_pred CCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~ 254 (395)
.+-+|||+++..+.+-+-. ...+.+++.+.-...-++...-.--..+|+++.++++---+.|..+.+.+.++.- .+
T Consensus 38 ~~~~gLa~~p~Sgl~aYpA--GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~--h~ 113 (1080)
T KOG1408|consen 38 KNANGLASVPCSGLCAYPA--GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF--HG 113 (1080)
T ss_pred ecCCcccccccccceeecc--CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc--cc
Confidence 4678999999988774332 3567778877666656665555566789999988777655555455555555543 11
Q ss_pred e-EEEEecCCcCceeEEEeccccEEE
Q psy13629 255 R-KVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 255 ~-~~lv~~~~~~P~glalD~~~~rLY 279 (395)
. -.++ ++-..-..+++.+.++.|-
T Consensus 114 vVAEfv-dHKY~vtcvaFsp~~kyvv 138 (1080)
T KOG1408|consen 114 VVAEFV-DHKYNVTCVAFSPGNKYVV 138 (1080)
T ss_pred chhhhh-hccccceeeeecCCCcEEE
Confidence 1 1122 2222344556665555443
No 259
>PHA02713 hypothetical protein; Provisional
Probab=43.08 E-value=4.2e+02 Score=27.84 Aligned_cols=91 Identities=9% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCCEEEEEECCC------CeEEEEEccCCCCCceEEEEeCCCCCcc-eEEEecCCCeEEEEeCC-----CCeEEEEECCC
Q psy13629 139 KKSMVCWTDHGT------EMISCCTFDGNNVGSKHNVITNGLITPD-GLAIDWLTEKLYWTDSE-----TNKLEVSSLDG 206 (395)
Q Consensus 139 ~~~~lywsd~~~------~~I~~~~~dg~~~~~~~~i~~~~~~~p~-glAVD~~~~~LYwtd~~-----~~~I~v~~ldg 206 (395)
.+++||...+.. +.+.+++.... .... ...+..|. +.++-..+++||..-+. ...++++++..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~--~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENK---IHVE--LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCC---eEee--CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 367899987632 35777777654 2222 22222222 22233357899998754 34688999876
Q ss_pred CceEEEEecCCCCcee-EEEeCCCCeEEEEe
Q psy13629 207 KKRKVLYWEDIDQPRA-IALVPQDSIMFWTD 236 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~-iavdp~~g~LYwtd 236 (395)
..-..+ ..+..|+. .++-..+|+||+.-
T Consensus 377 ~~W~~~--~~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 377 DKWKML--PDMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred CeEEEC--CCCCcccccccEEEECCEEEEEe
Confidence 544433 23333321 22222378999874
No 260
>KOG0308|consensus
Probab=42.62 E-value=4.5e+02 Score=28.10 Aligned_cols=181 Identities=12% Similarity=0.010 Sum_probs=109.8
Q ss_pred EEEEeeCCCC--CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC--CC-ceEE-----EEeCCCCCcc
Q psy13629 109 DIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN--VG-SKHN-----VITNGLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~--~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~--~~-~~~~-----i~~~~~~~p~ 178 (395)
.|+..+.... .-...+.+...-+..|++-...+.++.+.+-+++|+..+++... +. .... +..+.....-
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 5566555442 11234455566678888877888899999889999999988431 00 0011 1112234556
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l 258 (395)
.||-.. ++.++++-...+-|.+.+.....+..-+...-.+.+.|.++.++.++. +. +....|...++.-..--.+..
T Consensus 176 SLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~-sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 176 SLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SA-SSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEe-ec-CCCceEEeeeccccceeeeEE
Confidence 777664 567887777778888889888777766656678899999998776664 33 234567777765421222233
Q ss_pred EecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+..+. --.+..+..=..+|..+. .+.|.+.++..
T Consensus 253 vH~e~--VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n 286 (735)
T KOG0308|consen 253 VHKEG--VWALQSSPSFTHVYSGGR-DGNIYRTDLRN 286 (735)
T ss_pred eccCc--eEEEeeCCCcceEEecCC-CCcEEecccCC
Confidence 33332 223444444456666663 34565666554
No 261
>KOG3914|consensus
Probab=42.11 E-value=3.6e+02 Score=26.85 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=88.9
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEECCCCce-EEEEe--cCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecC-C
Q psy13629 176 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYW--EDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMN-G 250 (395)
Q Consensus 176 ~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~-~~l~~--~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~d-G 250 (395)
.+......+..+.|+.++.. .++.+++.+++.+ ..++. ..-..|++|.+.......-++|-. +...+.....+ |
T Consensus 64 a~~~~~~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34445555556677777754 4555666655543 22221 346789999998888888888843 22233333333 3
Q ss_pred CCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee-eeece--e--eeeeeeccCCccccceeee
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV-TSLGH--I--NLELYCNVFPKTCENFMKH 325 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~-t~~g~--~--~i~Lf~d~ap~t~~nf~~l 325 (395)
+....-.++.--..+++..+.+.|.-+| ++.+|.+..+.+....+ --+|| + .+++..+ ..-+
T Consensus 143 ----~~~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--------~~Ll 209 (390)
T KOG3914|consen 143 ----RCEPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--------YLLL 209 (390)
T ss_pred ----CcchhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhccccHhheeeeeeccC--------ceee
Confidence 2223334455567788888888888888 56789888888888777 23333 3 6666633 2223
Q ss_pred eccceecceeEEEEec
Q psy13629 326 CENGYYNGTKFHRSIR 341 (395)
Q Consensus 326 ~~~g~y~~~~~~r~~~ 341 (395)
..+| |++.|--+++
T Consensus 210 S~sG--D~tlr~Wd~~ 223 (390)
T KOG3914|consen 210 SGSG--DKTLRLWDIT 223 (390)
T ss_pred ecCC--CCcEEEEecc
Confidence 3344 5665554444
No 262
>PLN00162 transport protein sec23; Provisional
Probab=41.10 E-value=18 Score=39.57 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=44.7
Q ss_pred eeeeecccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCCCCCCccCcccccccCCCCcee
Q psy13629 40 YPHLIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYL 107 (395)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 107 (395)
-+++-.-..+-|+|++.|.+++.+++..++..+||.|++.+. +. .|....+..+...+|++|+
T Consensus 587 S~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~---~~--~P~pv~Ld~~si~~d~ilL 649 (761)
T PLN00162 587 SQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSF---NG--PPEPVLLDVASIAADRILL 649 (761)
T ss_pred hhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecC---CC--CCcceecchhhccCCceEE
Confidence 344434478889999999999999999999999999998862 11 2222334444555666554
No 263
>KOG1036|consensus
Probab=40.45 E-value=3.5e+02 Score=26.15 Aligned_cols=100 Identities=18% Similarity=0.132 Sum_probs=48.7
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCCC----ceE------EEEecC---CCCceeEEEeCCCCeEEEEeeCCCCeE
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGK----KRK------VLYWED---IDQPRAIALVPQDSIMFWTDWGEVPKI 243 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~----~~~------~l~~~~---~~~P~~iavdp~~g~LYwtd~~~~~~I 243 (395)
.+.++.=+ ++.=|++.+-.++|.|-.+|.+ .++ .....+ ..-.++|+++|..|.++-. |....|
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg--GsDG~V 256 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG--GSDGIV 256 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec--CCCceE
Confidence 34555554 5555566555666666655554 111 111011 2234788888887776532 233445
Q ss_pred EEEecCCCCcceEEEEec-CC-cCceeEEEeccccEEEEecc
Q psy13629 244 ERGAMNGDPRHRKVIVDS-TI-FWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~-~~-~~P~glalD~~~~rLYwaD~ 283 (395)
-+.++. +++.+-.- .. .....|+++.++..|=.++.
T Consensus 257 ~~Wd~~----~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLF----NRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEccCc----chhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 444443 23322221 11 12345666666666666653
No 264
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=40.39 E-value=1.1e+02 Score=20.37 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=23.6
Q ss_pred ceeEEEeCCCC---eEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 220 PRAIALVPQDS---IMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 220 P~~iavdp~~g---~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
.+.+.++|..+ .|.|++ . ..+|..+++-.....+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E-~-~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAE-H-QGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred eEEEEeCCCCCcccEEEEEc-c-CCeEEEEEcccCccceEe
Confidence 45677787665 899998 3 577888887632234443
No 265
>KOG2055|consensus
Probab=39.74 E-value=4.3e+02 Score=27.03 Aligned_cols=161 Identities=7% Similarity=-0.016 Sum_probs=77.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
..+.+..+.|++....|...+ -++++..+.+||......+.+..... -.....+-+.+...-++.+...-.+.+||..
T Consensus 212 s~~~I~sv~FHp~~plllvaG-~d~~lrifqvDGk~N~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAG-LDGTLRIFQVDGKVNPKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecCCCceEEEec-CCCcEEEEEecCccChhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeeccc
Confidence 356788999998777666665 67888888888863222233333322 1223344444442344554556667777754
Q ss_pred CceEEEEec-CC--CCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-CcCceeEEEeccccEEEEec
Q psy13629 207 KKRKVLYWE-DI--DQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 207 ~~~~~l~~~-~~--~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD 282 (395)
.....+-.. +. ..-+-..|++...+|-. -|....|....+-. .+.+.+-. -+...+++++.++++||.+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~--~G~~G~I~lLhakT----~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAI--AGNNGHIHLLHAKT----KELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEE--cccCceEEeehhhh----hhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 333222110 01 11233455555553322 23344454444322 11111110 11244566664444444443
Q ss_pred cceeeeeeeccccc
Q psy13629 283 GRLTFIEVMDYDGY 296 (395)
Q Consensus 283 ~~~~~I~~~~~dG~ 296 (395)
..+-|+..+++-.
T Consensus 364 -~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 364 -GTGEVYVWNLRQN 376 (514)
T ss_pred -CCceEEEEecCCc
Confidence 3446666665544
No 266
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=38.91 E-value=1.7e+02 Score=27.14 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=28.2
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 161 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~ 161 (395)
-.+..||||.+.+++||-.. ..++|+.++....
T Consensus 26 ge~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG 58 (236)
T PF14339_consen 26 GESLVGIDFRPANGQLYGLG-STGRLYTINPATG 58 (236)
T ss_pred CCeEEEEEeecCCCCEEEEe-CCCcEEEEECCCC
Confidence 45789999999999999885 6789999998764
No 267
>KOG1445|consensus
Probab=38.81 E-value=5.2e+02 Score=27.73 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=95.3
Q ss_pred EEEEeeCCCCCc----cEEecCCCCCeEEEEEEcCCC-EEEEEECCCCeE--EEEEccCCCC--CceEEEEeCCCCCcce
Q psy13629 109 DIRIANLSRPLK----PVTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMI--SCCTFDGNNV--GSKHNVITNGLITPDG 179 (395)
Q Consensus 109 ~I~~~~l~~~~~----~~~~~~~~~~~~gl~~d~~~~-~lywsd~~~~~I--~~~~~dg~~~--~~~~~i~~~~~~~p~g 179 (395)
.|-++++...++ +..-..+-..+..++||+-.. +|-+. ..++.| +|+..+|... ...+.++......+..
T Consensus 604 ~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa-~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 604 VIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA-TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred eEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec-ccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 455566544222 112222334456666766543 34333 244544 4555554321 1234455556666777
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
|...+..-.+..+.+.+.+|..-|+.......-+...-.+..+||-+|+.+.+- |- ....+|.+.+... ..+-+.
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A-tV-cKDg~~rVy~Prs---~e~pv~ 757 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA-TV-CKDGTLRVYEPRS---REQPVY 757 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee-ee-ecCceEEEeCCCC---CCCccc
Confidence 777776666666667788899988876655544446677888999998665553 32 3345565555543 122222
Q ss_pred ecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.. ..|.| -.+-||.|+.-+ ..|.++-+|...
T Consensus 758 Eg--~gpvg----tRgARi~wacdg-r~viv~Gfdk~S 788 (1012)
T KOG1445|consen 758 EG--KGPVG----TRGARILWACDG-RIVIVVGFDKSS 788 (1012)
T ss_pred cC--CCCcc----CcceeEEEEecC-cEEEEecccccc
Confidence 21 12444 246688888743 344455555543
No 268
>KOG2048|consensus
Probab=38.81 E-value=5.2e+02 Score=27.69 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=81.1
Q ss_pred cCCCCceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcc
Q psy13629 100 LQPDGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPD 178 (395)
Q Consensus 100 ~~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~ 178 (395)
++....-.|..|-+++.. ..+.+|||....+.|-.+. .++.|.-+++..+= ..+.++ .+.-.+.+
T Consensus 8 ~s~~~m~vhrcrf~d~~P-----------s~I~slA~s~kS~~lAvsR-t~g~IEiwN~~~~w--~~~~vi~g~~drsIE 73 (691)
T KOG2048|consen 8 QSRGKMQVHRCRFVDYKP-----------SEIVSLAYSHKSNQLAVSR-TDGNIEIWNLSNNW--FLEPVIHGPEDRSIE 73 (691)
T ss_pred cccceeEEEEEEEEeeec-----------cceEEEEEeccCCceeeec-cCCcEEEEccCCCc--eeeEEEecCCCCcee
Confidence 333344457777777765 4578999999999988776 67888888887642 223333 33445678
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+|+-- .+++|| +-..++.|.-.|+-...++.-++........++++|.+..+-+.
T Consensus 74 ~L~W~-e~~RLF-S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 74 SLAWA-EGGRLF-SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred eEEEc-cCCeEE-eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee
Confidence 88754 266775 44456777777777666666665667777888888877766665
No 269
>KOG0650|consensus
Probab=38.57 E-value=1.7e+02 Score=30.92 Aligned_cols=121 Identities=8% Similarity=0.066 Sum_probs=78.4
Q ss_pred EEecCCCCCeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 122 VTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 122 ~~~~~~~~~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
-+.+...+.+..+.|+..++.|-..-. .+..|...++.... .+.-+...-..|....+.+..-.||++.. ..|
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~v 589 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---SQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSV 589 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc---ccCchhhcCCceeEEEecCCCceEEEEec--cce
Confidence 355667788889999988887765532 44566666665431 12112223356778889998889999875 556
Q ss_pred EEEECCCCce-EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 200 EVSSLDGKKR-KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 200 ~v~~ldg~~~-~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
..++|.-... +.++ ++..+...++++|.+..|+.... ..++...++|=
T Consensus 590 RiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~--d~k~~WfDldl 638 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSY--DKKMCWFDLDL 638 (733)
T ss_pred EEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecC--CCeeEEEEccc
Confidence 7777754322 2233 56777888999988888876542 35566666654
No 270
>KOG0640|consensus
Probab=38.51 E-value=3.8e+02 Score=26.07 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=85.2
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-----CCCcceEEEecCCCeEEEEeCCCCe
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-----LITPDGLAIDWLTEKLYWTDSETNK 198 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-----~~~p~glAVD~~~~~LYwtd~~~~~ 198 (395)
+.+......+|.|+|.+..|.+.. ....+..++.+.. +-.+... -...+.+-... +++||+|-+..+.
T Consensus 212 ~~qd~~~vrsiSfHPsGefllvgT-dHp~~rlYdv~T~-----QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 212 VFQDTEPVRSISFHPSGEFLLVGT-DHPTLRLYDVNTY-----QCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGA 284 (430)
T ss_pred HhhccceeeeEeecCCCceEEEec-CCCceeEEeccce-----eEeeecCcccccccceeEEEecC-CccEEEEeccCCc
Confidence 344556778999999988777643 3445555666542 1112111 13455666664 8999999999998
Q ss_pred EEEEECCCCceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC------CcCceeEE
Q psy13629 199 LEVSSLDGKKRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST------IFWPNGIA 270 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~------~~~P~gla 270 (395)
|...|=-...+..-+. .+........+....+++. +. |....+....+. ++|.+..-.+ ...-..-.
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sS-G~DS~vkLWEi~---t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SS-GKDSTVKLWEIS---TGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe-ec-CCcceeeeeeec---CCceEEEEecCCcccchhhhhhhh
Confidence 8877632222222221 2345555566654444433 22 322223333322 1222211111 00111123
Q ss_pred EeccccEEEEeccceeeeeeeccccceeee
Q psy13629 271 IDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 271 lD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+...++.+.+-|..++.+-+-+.....++.
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred hcCccceEEccccccCceeeccccchhhhh
Confidence 455777888888777766555544444443
No 271
>KOG2110|consensus
Probab=37.66 E-value=4.2e+02 Score=26.28 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=70.9
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCcee-EEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRA-IALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~-iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~ 256 (395)
|+|--..++|-++=.+ .|+++|+......--+...-.+|.| +|+++....=|.+-.+ ....|...+... ....
T Consensus 91 L~VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v 166 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPV 166 (391)
T ss_pred EEEEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceee
Confidence 5555556677766543 4999999876655444344467774 5677766644555433 456788888776 3444
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeec-cccceeee
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV 300 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~ 300 (395)
..+..+-+.--.|+++.++..|=-+-.+.-.|.+.. .+|....+
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 445555556677899966665555554444445555 45555444
No 272
>KOG0281|consensus
Probab=37.02 E-value=3.3e+02 Score=26.87 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=81.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
+|++.|+....-...+...-.+..++-|. ++ ..++-..+..|.+.+++.........++.+.....+-+ |... +
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV--dfd~-k 331 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDD-K 331 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEe--CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee--cccc-c
Confidence 67777776644444556666777788775 23 44566678889999988652100111222233344444 4423 4
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
+.++.++..+|.+-+.+.-.....+ -.+-+|||--..+|+|.++-.+ ...|...+..
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl---~gHkRGIAClQYr~rlvVSGSS-DntIRlwdi~ 388 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQYRDRLVVSGSS-DNTIRLWDIE 388 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhh---hcccccceehhccCeEEEecCC-CceEEEEecc
Confidence 5567788889999998765544333 3456899998899999988633 4455555554
No 273
>KOG0263|consensus
Probab=36.79 E-value=5.8e+02 Score=27.64 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=97.3
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcce-EEEecCCCeEEEEeC-CC
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG-LAIDWLTEKLYWTDS-ET 196 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~g-lAVD~~~~~LYwtd~-~~ 196 (395)
.....+....+.++|..|.|..+.| .+-.++.++.-..++.. ...+...+...|-. +.+.+ +-.||+.. ..
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfL-lScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D 514 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFL-LSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAP--RGYYFATASHD 514 (707)
T ss_pred ceeEEeecCCCceeeeeecccccce-eeccCCcceeeeecccc----eeEEEecCCCcceeeEEecC--CceEEEecCCC
Confidence 3344466778889999999976654 45557788888888864 24444445555554 44544 34666653 33
Q ss_pred CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 197 NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
.+-.+-..|-.....++...+.....+.++|...++. |- +....+...+... +...+++ ..+.+-...|++.+.+.
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~a-TG-SsD~tVRlWDv~~-G~~VRiF-~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVA-TG-SSDRTVRLWDVST-GNSVRIF-TGHKGPVTALAFSPCGR 590 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcccccc-cC-CCCceEEEEEcCC-CcEEEEe-cCCCCceEEEEEcCCCc
Confidence 3333344444555555557788888899999887765 22 2233444444432 1344444 44555566777776554
Q ss_pred EEEEeccceeeeeeecccccee
Q psy13629 277 LLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.|--++ ..+.|..=|+.+...
T Consensus 591 ~LaSg~-ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 591 YLASGD-EDGLIKIWDLANGSL 611 (707)
T ss_pred eEeecc-cCCcEEEEEcCCCcc
Confidence 333333 345565556554333
No 274
>KOG0319|consensus
Probab=36.78 E-value=3.2e+02 Score=29.55 Aligned_cols=121 Identities=16% Similarity=0.031 Sum_probs=73.9
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceE-EEE-ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRK-VLY-WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~-~l~-~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
++++..++.||-+. .++|-..+.....+. ... .+......+++++|++.+||..-. +.-+....++....-+..
T Consensus 25 ~~~s~nG~~L~t~~--~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r--s~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC--GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR--SQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCCEEEEec--CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec--cceEEEEEcccchHhHhH
Confidence 88998888888665 366777777666553 111 134567789999999999987653 334455555542122222
Q ss_pred EEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeeeeeecee
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHI 306 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~~g~~ 306 (395)
.+ .+-.=.-.|++|+.+ .|.=+-...++|.+-++.+......-.|++
T Consensus 101 Ka-~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~g 147 (775)
T KOG0319|consen 101 KA-IHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHG 147 (775)
T ss_pred hh-ccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCC
Confidence 22 121123467888666 444444456888888888877777444443
No 275
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=36.73 E-value=4.5e+02 Score=26.35 Aligned_cols=143 Identities=12% Similarity=0.111 Sum_probs=72.1
Q ss_pred EEEEEeeCCCCCccEEecCCC-CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEE-Eec
Q psy13629 108 LDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLA-IDW 184 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~-~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glA-VD~ 184 (395)
..+..++|.. ++.+++.... ....|..+.+.++.||+.. ..+.+.+++++.. +.+.+..- .--...|-. ++.
T Consensus 60 ~nly~lDL~t-~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 60 RNLYLLDLAT-GEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVANS 134 (386)
T ss_dssp -EEEEEETTT--EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-T
T ss_pred cceEEEEccc-CEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC---cEEEEEECCcccccccceeeCC
Confidence 3677888887 6666666654 3344667888999998765 4568999999875 22233221 111111222 233
Q ss_pred CCCeEEEEe---------------------CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeE-EEE-e--eCC
Q psy13629 185 LTEKLYWTD---------------------SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIM-FWT-D--WGE 239 (395)
Q Consensus 185 ~~~~LYwtd---------------------~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~L-Ywt-d--~~~ 239 (395)
...++.-+. .-..+|...++.+...++++.+ -.+-.-+-.+|....+ =++ + |..
T Consensus 135 d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~ 213 (386)
T PF14583_consen 135 DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDL 213 (386)
T ss_dssp TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTT
T ss_pred CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcce
Confidence 222322221 1246899999999988888843 3344445555554432 233 2 222
Q ss_pred -CCeEEEEecCCCCcceEEE
Q psy13629 240 -VPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 240 -~~~I~~~~~dG~~~~~~~l 258 (395)
..||..++.|| ++.+-+
T Consensus 214 Vd~RiW~i~~dg--~~~~~v 231 (386)
T PF14583_consen 214 VDQRIWTINTDG--SNVKKV 231 (386)
T ss_dssp SS-SEEEEETTS-----EES
T ss_pred eceEEEEEEcCC--Ccceee
Confidence 35999999999 555444
No 276
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.38 E-value=2.9e+02 Score=26.71 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCC
Q psy13629 149 GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGK 207 (395)
Q Consensus 149 ~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~ 207 (395)
...+|+++.+=|.. . ....=+-=||+|+.+.|||--+- ...+++-.-+|+
T Consensus 18 d~~~iY~felvG~~----P-----~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~ 68 (339)
T PF09910_consen 18 DSEKIYRFELVGPP----P-----TSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGR 68 (339)
T ss_pred CceEEEEeeeccCC----C-----CCCCccceeeeeecceEEEeeeecCCceeeeccCCc
Confidence 45678888877641 0 01122235788888888877642 334444444444
No 277
>KOG0772|consensus
Probab=35.91 E-value=5.3e+02 Score=26.91 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=75.5
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc--eEEEEeCCCCCcceEEEecCCCeEEEEeCCC
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSET 196 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~--~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~ 196 (395)
.....+..+.+.+.++++|+.+-+++ +..-+..|.-+++.|-+... ...+....-...+.++....++.|. +-++.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL-vvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL-VVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceee-eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE-EEecC
Confidence 34445556677789999999887765 66677889999988753211 1222233446678888887555554 44456
Q ss_pred CeEEEEECCCCceEEEEecC------------CCCceeEEEeCCCCeEEEEe
Q psy13629 197 NKLEVSSLDGKKRKVLYWED------------IDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~------------~~~P~~iavdp~~g~LYwtd 236 (395)
.++.++|-||.........+ ......-..+|.++..|.|.
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 78889999998766555321 22334445677777777776
No 278
>KOG0319|consensus
Probab=35.70 E-value=6.1e+02 Score=27.55 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=95.5
Q ss_pred cccccccCCCCcee----EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE
Q psy13629 94 RCSFEKLQPDGAYL----LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169 (395)
Q Consensus 94 ~C~~~~~~~~~~~~----~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i 169 (395)
.|.+.++.-+.+.. .++|.+++.+ ....++........+|+. +.++.++.|...++++....++.+. .....
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~-~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~--~~~~~ 403 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPT-SYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNC--SKSLC 403 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCC-CceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCc--chhhh
Confidence 35566776665554 3788898877 666666667777778873 4566788888888887777775431 11111
Q ss_pred E---eCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE---EEEe------cCCCCceeEEEeCCCCeEEEEee
Q psy13629 170 I---TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK---VLYW------EDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 170 ~---~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~---~l~~------~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
+ ...-+...++|..-.+-..+.+-+....|.+-++.++... .++. ......+++++.|. +.|+-|-.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~S 482 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-DKLIATGS 482 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-CceEEecc
Confidence 1 1223567788886655677777788888998888772221 1110 12567899999985 46666652
Q ss_pred C-CCCeEEEEe
Q psy13629 238 G-EVPKIERGA 247 (395)
Q Consensus 238 ~-~~~~I~~~~ 247 (395)
- ...+|....
T Consensus 483 qDktaKiW~le 493 (775)
T KOG0319|consen 483 QDKTAKIWDLE 493 (775)
T ss_pred cccceeeeccc
Confidence 2 456777666
No 279
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=35.12 E-value=4e+02 Score=25.29 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=46.4
Q ss_pred cCCCCCeEEEEEEcCCC----EEEEEECCCCeEEEEEcc-CCCCCceEEEEeC---CCCCcceEEEecCCCeEEEEeCCC
Q psy13629 125 IKDLEEGAAIDYYYKKS----MVCWTDHGTEMISCCTFD-GNNVGSKHNVITN---GLITPDGLAIDWLTEKLYWTDSET 196 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~----~lywsd~~~~~I~~~~~d-g~~~~~~~~i~~~---~~~~p~glAVD~~~~~LYwtd~~~ 196 (395)
...+..++|++.....+ .+|+++ ..+.|..+.+- +.+. ....-... -....+|+..|..+|.||.++. +
T Consensus 149 ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnG-kv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-d 225 (364)
T COG4247 149 SSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNG-KVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-D 225 (364)
T ss_pred ccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCc-eEcceeeEeeecCCcccceeeccccceEEEeec-c
Confidence 34567788888654332 455555 44667666652 2211 11111111 1246789999999999999874 4
Q ss_pred CeEEEEECC
Q psy13629 197 NKLEVSSLD 205 (395)
Q Consensus 197 ~~I~v~~ld 205 (395)
-.|..+..+
T Consensus 226 vaiWK~~Ae 234 (364)
T COG4247 226 VAIWKYEAE 234 (364)
T ss_pred ceeeecccC
Confidence 667776644
No 280
>KOG0772|consensus
Probab=33.51 E-value=5.8e+02 Score=26.65 Aligned_cols=150 Identities=9% Similarity=0.062 Sum_probs=84.7
Q ss_pred EEEEeeCCC-CCccEEecCC-----CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---CCCCcce
Q psy13629 109 DIRIANLSR-PLKPVTIIKD-----LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLITPDG 179 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~~~~~~-----~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~~~~p~g 179 (395)
.+|+.++.. .++..++.+. -..+..-+|+++++. +.+...++.|+.++..+- .......+.. .......
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeE
Confidence 567777765 2333333332 123567789887654 777778899999988432 1111112211 2346788
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCc---eeEEEeCCC---------------CeEEEEeeCCCC
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP---RAIALVPQD---------------SIMFWTDWGEVP 241 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P---~~iavdp~~---------------g~LYwtd~~~~~ 241 (395)
|++...++.| .+-+..+++.+-+|.-...-.....++..| ..++++|+. |.||+-|.....
T Consensus 370 i~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 370 ISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEeccccchh-hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 9998755544 566778888888887654433333333332 235555544 345555544455
Q ss_pred eEEEEecCCCCcceEEEEecC
Q psy13629 242 KIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 242 ~I~~~~~dG~~~~~~~lv~~~ 262 (395)
.|++++.++. +-.+++....
T Consensus 449 ~v~ki~i~~a-Svv~~~Whpk 468 (641)
T KOG0772|consen 449 TVYKIDISTA-SVVRCLWHPK 468 (641)
T ss_pred eEEEecCCCc-eEEEEeecch
Confidence 6777777763 3334444433
No 281
>KOG0639|consensus
Probab=33.28 E-value=5.4e+02 Score=26.77 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=94.8
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
+-+++.+..++++|-. +.+.|.++++.+... ...+--.. .-+..+..-+-+.++.|. +-.+..++.+-||...
T Consensus 422 VcAvtIS~~trhVyTg--GkgcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdgrtLi-vGGeastlsiWDLAap 497 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTG--GKGCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDGRTLI-VGGEASTLSIWDLAAP 497 (705)
T ss_pred EEEEEecCCcceeEec--CCCeEEEeeccCCCC-CCccccccccCcccceeeeEecCCCceEE-eccccceeeeeeccCC
Confidence 4566778888888843 556777777765421 11111111 224566666777666665 4445677888888765
Q ss_pred ceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEE-Eecc-ccEEEEecc
Q psy13629 208 KRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIA-IDFN-NRLLYWIDG 283 (395)
Q Consensus 208 ~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gla-lD~~-~~rLYwaD~ 283 (395)
..++... ......++|+++|+.+..|-+. . ...|...++-. +++|..--+++.|.. ||.. .+.=.|+-.
T Consensus 498 TprikaeltssapaCyALa~spDakvcFscc-s-dGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAISPDAKVCFSCC-S-DGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred CcchhhhcCCcchhhhhhhcCCccceeeeec-c-CCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCC
Confidence 5544331 2345678999999887666544 3 34566666643 455655455666653 4532 344568888
Q ss_pred ceeeeeeeccccce
Q psy13629 284 RLTFIEVMDYDGYV 297 (395)
Q Consensus 284 ~~~~I~~~~~dG~~ 297 (395)
-+++|.+-|+....
T Consensus 571 lDntvRcWDlregr 584 (705)
T KOG0639|consen 571 LDNTVRCWDLREGR 584 (705)
T ss_pred Cccceeehhhhhhh
Confidence 88999888875443
No 282
>PHA02713 hypothetical protein; Provisional
Probab=33.08 E-value=6e+02 Score=26.70 Aligned_cols=131 Identities=9% Similarity=0.016 Sum_probs=67.9
Q ss_pred CCCEEEEEECCC-----CeEEEEEccCCCCCceEEEEeCCCCCcc-eEEEecCCCeEEEEeCC-----------------
Q psy13629 139 KKSMVCWTDHGT-----EMISCCTFDGNNVGSKHNVITNGLITPD-GLAIDWLTEKLYWTDSE----------------- 195 (395)
Q Consensus 139 ~~~~lywsd~~~-----~~I~~~~~dg~~~~~~~~i~~~~~~~p~-glAVD~~~~~LYwtd~~----------------- 195 (395)
.+++||...+.+ +.+.+++.... ....+ ..+..|. +.++-..+++||+.-+.
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~--~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDD---KWKML--PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCC---eEEEC--CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 367899987643 34777777653 23322 2222211 11222247999997542
Q ss_pred ------CCeEEEEECCCCceEEEEecCCCCc---eeEEEeCCCCeEEEEeeCC------CCeEEEEecCCCCcceEEEEe
Q psy13629 196 ------TNKLEVSSLDGKKRKVLYWEDIDQP---RAIALVPQDSIMFWTDWGE------VPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 196 ------~~~I~v~~ldg~~~~~l~~~~~~~P---~~iavdp~~g~LYwtd~~~------~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.+.++++|+....-..+- .+..| .++++ .++.||+.- |. ...+++.+.+. .+.=..+.
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~--~m~~~r~~~~~~~--~~~~IYv~G-G~~~~~~~~~~ve~Ydp~~--~~~W~~~~ 497 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLP--NFWTGTIRPGVVS--HKDDIYVVC-DIKDEKNVKTCIFRYNTNT--YNGWELIT 497 (557)
T ss_pred cccccccceEEEECCCCCeEeecC--CCCcccccCcEEE--ECCEEEEEe-CCCCCCccceeEEEecCCC--CCCeeEcc
Confidence 246888888776554332 22222 23443 378999884 21 13467777764 11211221
Q ss_pred cCCcC---ceeEEEeccccEEEEeccc
Q psy13629 261 STIFW---PNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 261 ~~~~~---P~glalD~~~~rLYwaD~~ 284 (395)
.+.. -.|+++ .+++||++=..
T Consensus 498 -~m~~~r~~~~~~~--~~~~iyv~Gg~ 521 (557)
T PHA02713 498 -TTESRLSALHTIL--HDNTIMMLHCY 521 (557)
T ss_pred -ccCcccccceeEE--ECCEEEEEeee
Confidence 1111 223443 36889987543
No 283
>KOG4227|consensus
Probab=32.46 E-value=5.3e+02 Score=25.90 Aligned_cols=104 Identities=4% Similarity=-0.026 Sum_probs=59.8
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--CCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..++..|+|+..+.+|| +....++|..-+...+ ....+... .-...-+|.+.+. .+++.+-...+.+...+..
T Consensus 105 ~SNIF~L~F~~~N~~~~-SG~~~~~VI~HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLY-SGERWGTVIKHDIETK---QSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ccceEEEEEccCCeeEe-cCCCcceeEeeecccc---eeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEecc
Confidence 46789999998888777 4446667776666654 11222222 2245778888886 5666555555666655543
Q ss_pred CCc---eEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 206 GKK---RKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 206 g~~---~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.+. ..++.+....+-+...++|..-.|..+.
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 322 1233323344445566666665555554
No 284
>KOG1034|consensus
Probab=32.25 E-value=3.2e+02 Score=26.78 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=74.4
Q ss_pred CCccCccccc-ccCCCCc------eeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC
Q psy13629 89 MPVQERCSFE-KLQPDGA------YLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 161 (395)
Q Consensus 89 ~~~~~~C~~~-~~~~~~~------~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~ 161 (395)
++.-..|+|. +.....- ++--|+++|+....-...+...-..+..|-+.+..-.|..+-..+..|...+...
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~- 167 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT- 167 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-
Confidence 4445678873 2222111 3457899998773334455666778888999999888988988888888888875
Q ss_pred CCCceEEEEeCCCC--CcceEEEecCCCeEEEEeC-CCCeEEEEECCC
Q psy13629 162 NVGSKHNVITNGLI--TPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDG 206 (395)
Q Consensus 162 ~~~~~~~i~~~~~~--~p~glAVD~~~~~LYwtd~-~~~~I~v~~ldg 206 (395)
..-..+..+.. +-+=|.||+...--|.... ..++|..-+++.
T Consensus 168 ---~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 168 ---DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ---CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 33455555543 3445788887666666653 355666666653
No 285
>KOG4649|consensus
Probab=32.19 E-value=4.5e+02 Score=25.04 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=32.5
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC-eEEEEE
Q psy13629 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN-KLEVSS 203 (395)
Q Consensus 132 ~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~-~I~v~~ 203 (395)
.-++.|+.++++||-..-..+|... .++.+++ +.+-.-++.|||-+..++ ++..+.
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE~s-----------a~vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIECS-----------AIVVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred eEEEecCCCCcEEeehhhCceeeee-----------eEEECCE-----EEEEEccCcEEEEEecchhheeeee
Confidence 3356788889999976555555321 1222222 455556778888876655 444443
No 286
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=30.66 E-value=4.8e+02 Score=24.80 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=54.8
Q ss_pred EEeCCCCeEEEEECCCCce--EEEE------ecCCCCceeEEEeCCC--CeEEEEeeCCCCeEEEEec-C-CCCcceEEE
Q psy13629 191 WTDSETNKLEVSSLDGKKR--KVLY------WEDIDQPRAIALVPQD--SIMFWTDWGEVPKIERGAM-N-GDPRHRKVI 258 (395)
Q Consensus 191 wtd~~~~~I~v~~ldg~~~--~~l~------~~~~~~P~~iavdp~~--g~LYwtd~~~~~~I~~~~~-d-G~~~~~~~l 258 (395)
.+|...++|..+.+|+..+ +.+. +.....|+|+++.... |-+|+--.+....|....+ | |.+.-+.-+
T Consensus 118 ASdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~ 197 (364)
T COG4247 118 ASDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKL 197 (364)
T ss_pred cccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEccee
Confidence 3455567787777776543 2332 2357889999986543 3344332222344554444 1 111111122
Q ss_pred Eec-C-CcCceeEEEeccccEEEEeccceeeeeeec
Q psy13629 259 VDS-T-IFWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 259 v~~-~-~~~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
+.. . -.+--||..|-..+.||.++.. -.|+...
T Consensus 198 vR~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~ 232 (364)
T COG4247 198 VRQFKIPTQTEGMVADDETGFLYIAEED-VAIWKYE 232 (364)
T ss_pred eEeeecCCcccceeeccccceEEEeecc-ceeeecc
Confidence 221 1 1146689999788999999853 4465554
No 287
>smart00284 OLF Olfactomedin-like domains.
Probab=30.21 E-value=4.7e+02 Score=24.60 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=56.3
Q ss_pred EEEEEEcCCC-EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC--CcceEEEecCCCeEEEEeC---CCCeE-EEEEC
Q psy13629 132 AAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI--TPDGLAIDWLTEKLYWTDS---ETNKL-EVSSL 204 (395)
Q Consensus 132 ~gl~~d~~~~-~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~--~p~glAVD~~~~~LYwtd~---~~~~I-~v~~l 204 (395)
.-+|.|..+= .||-+....+.|....+|-..+.-.++.-..... .-++.-| -|.||.+++ ...+| +.+|.
T Consensus 131 iDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt 207 (255)
T smart00284 131 IDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDT 207 (255)
T ss_pred EEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEEC
Confidence 3445554331 2344455668888888886544322222222222 2233333 589999985 23344 66777
Q ss_pred CCCceEEE---EecCCCCceeEEEeCCCCeEEEEe
Q psy13629 205 DGKKRKVL---YWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 205 dg~~~~~l---~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.+.....+ +......-..|--+|.++.||.=|
T Consensus 208 ~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 208 NTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred CCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 76543322 112233344499999999999766
No 288
>KOG3881|consensus
Probab=29.84 E-value=4.9e+02 Score=26.00 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=54.0
Q ss_pred EEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE-EecCCCC
Q psy13629 142 MVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQ 219 (395)
Q Consensus 142 ~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l-~~~~~~~ 219 (395)
.-|.+-...+.+..++..-. .+.+.-.. .-.....++.++.++.||++|. .+.+..+|+.++..... +..--..
T Consensus 217 ~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQ---RRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred ceEEEEecceeEEEecCccc---CcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeeccccCCccCC
Confidence 34444444455555555532 22222222 2244677899999999999985 46678888777665443 3344578
Q ss_pred ceeEEEeCCCCeEE
Q psy13629 220 PRAIALVPQDSIMF 233 (395)
Q Consensus 220 P~~iavdp~~g~LY 233 (395)
+++|..+|...+|-
T Consensus 293 irsih~hp~~~~la 306 (412)
T KOG3881|consen 293 IRSIHCHPTHPVLA 306 (412)
T ss_pred cceEEEcCCCceEE
Confidence 99999998665553
No 289
>KOG3567|consensus
Probab=29.12 E-value=78 Score=32.20 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=34.6
Q ss_pred CeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 241 ~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
++|.+++.+- ...++..-...+..|.||.+| .++..|++|..++.+..-...++
T Consensus 445 ~~ilvi~~~n-~~~l~~~g~~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 445 DTILVIDPNN-AAVLQSSGKNLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred ceEEEEcCcc-hhhhhhccCCceecCCcceec-CCCcEEeecccchhhhhcccccc
Confidence 5677777763 123332222346789999999 56777888888887765554443
No 290
>KOG1963|consensus
Probab=28.87 E-value=5.6e+02 Score=28.15 Aligned_cols=112 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
+.....+++|...+..|| |.+..+.+.+..++. ..+..+..-..-..+++|.+ .+.+|-.--+.++|....+..
T Consensus 250 H~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T----~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLET----GKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cccccceeEEecCCceEe-ecccceEEEEEeecC----CCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccc
Q ss_pred CceEEEEecCCCCc------------eeEEEeC-CCCeEEEEeeCCCCeEEEEec
Q psy13629 207 KKRKVLYWEDIDQP------------RAIALVP-QDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 207 ~~~~~l~~~~~~~P------------~~iavdp-~~g~LYwtd~~~~~~I~~~~~ 248 (395)
......+ .++..| .++.+|| .+..+|-+- ...|.-.++
T Consensus 324 l~~k~tI-sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~---~g~vQ~ydl 374 (792)
T KOG1963|consen 324 LEIKSTI-SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH---PGHVQFYDL 374 (792)
T ss_pred hhhhhhc-cCccCCCccccccccccceeEEEcCCCCceeecCC---CceEEEEec
No 291
>KOG2139|consensus
Probab=28.85 E-value=5.9e+02 Score=25.35 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=104.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
..|++.+.+.+...-+....++...-|-|+|+++.||.+.. +......+....-..++. +... .+..+-.-++.++
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-davfrlw~e~q~wt~erw-~lgs--grvqtacWspcGs 293 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-DAVFRLWQENQSWTKERW-ILGS--GRVQTACWSPCGS 293 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-cceeeeehhcccceecce-eccC--CceeeeeecCCCC
Confidence 47888888773333333456777778899999999998763 222222333332111111 2222 2555666688899
Q ss_pred eEEEEeCCCCeEEEEECCCCce----------EEEEec--------C----CCCceeEEEeCCCCeEEEEeeCCC-----
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKR----------KVLYWE--------D----IDQPRAIALVPQDSIMFWTDWGEV----- 240 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~----------~~l~~~--------~----~~~P~~iavdp~~g~LYwtd~~~~----- 240 (395)
.|-++-....+++.+..+++.. ..++.+ + ...+..||-||.+-+|-++--+..
T Consensus 294 fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 294 FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 9988988889999998877422 222221 1 456788999999999988764421
Q ss_pred -CeEEEEecCCCCcceEEEE--ec-CCcCceeEEEe--ccccEEEEeccceeeeeeeccc
Q psy13629 241 -PKIERGAMNGDPRHRKVIV--DS-TIFWPNGIAID--FNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 241 -~~I~~~~~dG~~~~~~~lv--~~-~~~~P~glalD--~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.-|.+.+..- +-...+. .. .-..|.-|.+. +.+++|.-..|.+++|....++
T Consensus 374 k~~i~~fdtr~--sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 374 KLHISRFDTRK--SPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhcccc--cCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1222222211 1111111 11 12246666654 2556777777777777665544
No 292
>KOG0639|consensus
Probab=28.66 E-value=6.9e+02 Score=26.04 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=124.8
Q ss_pred eecccccchhhHHHhhhhcccccceeeeeecceee--------------eeeecCCCCCCCCccCc-ccccccCCCCce-
Q psy13629 43 LIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLI--------------SLHVIDPNSDEMPVQER-CSFEKLQPDGAY- 106 (395)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li--------------~~~~~~~~~~~~~~~~~-C~~~~~~~~~~~- 106 (395)
|+|+-+..|-|+.+-+.-..+--+.++.-+--++. |....+.+.-.|..... -.-..+.+|+..
T Consensus 401 l~g~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 401 LVGPGIPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred hcCCCCCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE
Confidence 67888888988888877776665666655555552 11111111111111110 001234455333
Q ss_pred -----eEEEEEeeCCCCCc-c-EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---CCCC
Q psy13629 107 -----LLDIRIANLSRPLK-P-VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLIT 176 (395)
Q Consensus 107 -----~~~I~~~~l~~~~~-~-~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~~~~ 176 (395)
...+.+.||..... . ..+.......++||.+++.+ |.++-..++.|..+++... +++.. ....
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq------~~VrqfqGhtDG 553 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDG 553 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccc------eeeecccCCCCC
Confidence 35677777765211 1 11122235678899988765 5556668889999999863 23322 2234
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC-CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
...|.|... |.=.||-.-.+.+..-|+..... +...+ -.+...|--.|...+|-+-- ++..++.....| ..+
T Consensus 554 ascIdis~d-GtklWTGGlDntvRcWDlregrq--lqqhdF~SQIfSLg~cP~~dWlavGM--ens~vevlh~sk--p~k 626 (705)
T KOG0639|consen 554 ASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQ--LQQHDFSSQIFSLGYCPTGDWLAVGM--ENSNVEVLHTSK--PEK 626 (705)
T ss_pred ceeEEecCC-CceeecCCCccceeehhhhhhhh--hhhhhhhhhheecccCCCccceeeec--ccCcEEEEecCC--ccc
Confidence 556777653 44458988888888888754332 22122 24556666777776655422 567788888887 444
Q ss_pred EEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 256 ~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
-.+...+ ...-.|.+.+.++ -|++-.++|
T Consensus 627 yqlhlhe-ScVLSlKFa~cGk-wfvStGkDn 655 (705)
T KOG0639|consen 627 YQLHLHE-SCVLSLKFAYCGK-WFVSTGKDN 655 (705)
T ss_pred eeecccc-cEEEEEEecccCc-eeeecCchh
Confidence 3332221 1233455554443 444444444
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=28.60 E-value=5.7e+02 Score=25.10 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC--
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI-- 263 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~-- 263 (395)
++.+|+++. .+.+...++..... +-......+..++++ +++||+.+. ..+++.++... . ..+.-....
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~--~W~~~~~~~~~~~~~--~~~vy~~~~--~g~l~ald~~t--G-~~~W~~~~~~~ 325 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQI--VWKREYGSVNDFAVD--GGRIYLVDQ--NDRVYALDTRG--G-VELWSQSDLLH 325 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCE--EEeecCCCccCcEEE--CCEEEEEcC--CCeEEEEECCC--C-cEEEcccccCC
Confidence 578888774 46788888764432 222223334445554 788998872 46688887754 1 221111111
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
..-.+.++. +++||+.+.. +.+..++.+
T Consensus 326 ~~~~sp~v~--~g~l~v~~~~-G~l~~ld~~ 353 (394)
T PRK11138 326 RLLTAPVLY--NGYLVVGDSE-GYLHWINRE 353 (394)
T ss_pred CcccCCEEE--CCEEEEEeCC-CEEEEEECC
Confidence 011122332 6788888753 567677753
No 294
>KOG0264|consensus
Probab=28.51 E-value=6.3e+02 Score=25.54 Aligned_cols=125 Identities=7% Similarity=0.040 Sum_probs=87.1
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+......+.-++|++....||-+=..++++...+.... .......+...-...+.+++.+-++.|..|-+..+++...|
T Consensus 223 ~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 223 FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred eecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 33445567788999999999999878888888887741 11223334444566789999999999999998899999999
Q ss_pred CCCCceEEE-EecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 204 LDGKKRKVL-YWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 204 ldg~~~~~l-~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+..-..... +..--.....+..+|....+.-+. +...++.+.+++-
T Consensus 302 lRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS-g~D~rl~vWDls~ 348 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS-GTDRRLNVWDLSR 348 (422)
T ss_pred chhcccCceeccCCCcceEEEEeCCCCCceeEec-ccCCcEEEEeccc
Confidence 876444221 212345566677778777777665 5556677777654
No 295
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=28.18 E-value=97 Score=31.84 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=41.1
Q ss_pred eeeeeeeccCCccccceeeeecccee--cceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeEEEe
Q psy13629 306 INLELYCNVFPKTCENFMKHCENGYY--NGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSM 383 (395)
Q Consensus 306 ~~i~Lf~d~ap~t~~nf~~l~~~g~y--~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~l~m 383 (395)
+.++||.+.||.|++.|..+..=-.. --..+|-..++-.+--++.. .++.+.+|+.|.-.- ..|.++|
T Consensus 377 i~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~---------~~k~LiPEN~P~~~V-~ag~Igv 446 (503)
T TIGR03268 377 IEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKE---------LAKGLIPENTPEDKV-EAGVIGV 446 (503)
T ss_pred EEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCch---------hccccCCCCCCCCcc-ccceEee
Confidence 49999999999999999987642110 01233333444333322221 134455666555434 3788887
Q ss_pred ecCC
Q psy13629 384 ANSG 387 (395)
Q Consensus 384 a~~~ 387 (395)
-|..
T Consensus 447 TN~a 450 (503)
T TIGR03268 447 TNQA 450 (503)
T ss_pred echh
Confidence 6653
No 296
>KOG0305|consensus
Probab=27.99 E-value=7e+02 Score=25.87 Aligned_cols=151 Identities=8% Similarity=-0.096 Sum_probs=91.1
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC--CCeEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEV 201 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~--~~~I~v 201 (395)
........-||.|.++++ .+.+...++.+...+.... ....-+.........||.+|-...|-.+-.+ ...|.-
T Consensus 297 ~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~---~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP---EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhcccceeeeeEECCCCC-eeccCCCccceEeccCCCc---cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 334566788999998765 4556667888888888543 2333344445667788888878888777644 345666
Q ss_pred EECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEE
Q psy13629 202 SSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYW 280 (395)
Q Consensus 202 ~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYw 280 (395)
-+..+..+...+ ....+...|+-.+..+.|--|- | ....|....... ..+......+...---|++.+++..|..
T Consensus 373 wn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 373 WNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEE
Confidence 666655555444 4567788888888777776554 4 334455555544 2333333333222334555555555554
Q ss_pred ec
Q psy13629 281 ID 282 (395)
Q Consensus 281 aD 282 (395)
+.
T Consensus 449 ~a 450 (484)
T KOG0305|consen 449 GA 450 (484)
T ss_pred ec
Confidence 44
No 297
>KOG0273|consensus
Probab=27.90 E-value=6.8e+02 Score=25.73 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=81.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEe-CCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTD-SETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd-~~~~~I~v~~ld 205 (395)
..+...+|+|...+. +..+...++.+..++.+|.. ..++ ..-..| =+++-|.+.-=|... ...+++...|.-
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l---~~tl--~~HkgP-I~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL---ISTL--GQHKGP-IFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh---hhhh--hccCCc-eEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 346789999987655 55666688999999999862 1111 212222 267777666555544 335666666655
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEE
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rL 278 (395)
.......+ .+...-++-|+-.+.-=|.+. +....|.++.+++. ....++.. +-+..++|..++.+..|
T Consensus 307 ~g~~~q~f--~~~s~~~lDVdW~~~~~F~ts-~td~~i~V~kv~~~-~P~~t~~G-H~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 307 TGTVKQQF--EFHSAPALDVDWQSNDEFATS-STDGCIHVCKVGED-RPVKTFIG-HHGEVNALKWNPTGSLL 374 (524)
T ss_pred CceEEEee--eeccCCccceEEecCceEeec-CCCceEEEEEecCC-Ccceeeec-ccCceEEEEECCCCceE
Confidence 44444443 122222555665555555554 33445677777662 23334444 66678888888655543
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.14 E-value=5.8e+02 Score=24.68 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=108.8
Q ss_pred EEEEeeCCCCCccE-EecCCCCCeEEE-EEEcCCCEEEEEEC----CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 109 DIRIANLSRPLKPV-TIIKDLEEGAAI-DYYYKKSMVCWTDH----GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~-~~~~~~~~~~gl-~~d~~~~~lywsd~----~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
-..++|..+..... +..+.-.+.+|= .|+++++.||-++. +.+.|-+++...+ + .+..........|..|.+
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~-~ri~E~~s~GIGPHel~l 106 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-Y-RRIGEFPSHGIGPHELLL 106 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-c-EEEeEecCCCcChhhEEE
Confidence 45667776633333 333444455543 48999999999954 3578988888843 1 333344455668999999
Q ss_pred ecCCCeEEEEeCCC-----------------CeEEEE-ECCCCceEEE-Eec--CCCCceeEEEeCCCCeEEEEeeC---
Q psy13629 183 DWLTEKLYWTDSET-----------------NKLEVS-SLDGKKRKVL-YWE--DIDQPRAIALVPQDSIMFWTDWG--- 238 (395)
Q Consensus 183 D~~~~~LYwtd~~~-----------------~~I~v~-~ldg~~~~~l-~~~--~~~~P~~iavdp~~g~LYwtd~~--- 238 (395)
.+.++.|-+++.+- ..+... ..+|+..... +.. ...+.+-|+++++..-++=..|.
T Consensus 107 ~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 107 MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence 99888999998431 122223 2223322221 111 12357889999875555544553
Q ss_pred --CCCeEEEEecCCCCcceEEEEec--C-----CcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 239 --EVPKIERGAMNGDPRHRKVIVDS--T-----IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 239 --~~~~I~~~~~dG~~~~~~~lv~~--~-----~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..+-+.....++ . .+ ++.. . -++.-.++++.+++.+..+....+++...+...
T Consensus 187 ~~~~PLva~~~~g~--~-~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 187 GDAPPLVALHRRGG--A-LR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred CccCCeEEEEcCCC--c-ce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 134455555444 1 21 2221 1 246778899877888989999889888876443
No 299
>KOG4283|consensus
Probab=27.04 E-value=5.9e+02 Score=24.69 Aligned_cols=139 Identities=9% Similarity=0.020 Sum_probs=77.7
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC-----CCcce--E
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-----ITPDG--L 180 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~-----~~p~g--l 180 (395)
+.|..+.+.. ..-+..+.-+.+++|..|+..++...+...++.|..+++......+...++.... ..+++ .
T Consensus 25 rRil~L~Ln~--d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky 102 (397)
T KOG4283|consen 25 RRILSLQLNN--DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY 102 (397)
T ss_pred hhhheeeccC--CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee
Confidence 3455555544 2334555668899999999999999999999999999998653111111221110 11111 1
Q ss_pred EE-----ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCC--CeEEEEeeCCCCeEEEEecCC
Q psy13629 181 AI-----DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD--SIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 181 AV-----D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~--g~LYwtd~~~~~~I~~~~~dG 250 (395)
+| =|...-+|-+.+..+.+.|-|.+.....+.+. --...+.-+.+|.. ..|. +.-....+|..+++..
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLi-A~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLI-AAGTRDVQVRLCDIAS 177 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEE-EEecCCCcEEEEeccC
Confidence 11 12334455566777888888877766555442 11122233333322 1232 2212467788888864
No 300
>KOG0640|consensus
Probab=26.88 E-value=6e+02 Score=24.78 Aligned_cols=159 Identities=14% Similarity=0.230 Sum_probs=96.2
Q ss_pred EEecCCCC-CeEEEEEEcCCCEEEEEECCCCeEEEEEcc-------------CCCCCceEEEE---eCCCCCcceEEEec
Q psy13629 122 VTIIKDLE-EGAAIDYYYKKSMVCWTDHGTEMISCCTFD-------------GNNVGSKHNVI---TNGLITPDGLAIDW 184 (395)
Q Consensus 122 ~~~~~~~~-~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-------------g~~~~~~~~i~---~~~~~~p~glAVD~ 184 (395)
+..+...+ ...+-+|+++ +.|+.+...+-.|...+.. |.. .....++ .+.....+.|++.+
T Consensus 105 t~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~-qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDT-QARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-ccCCceEeehhhccCcccceeecc
Confidence 33333333 4456678765 4577777667677666544 110 0111111 22345678889987
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEE---EEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKV---LYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~---l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
...|-.+.+..+.|..+|......+. ++ .+....+.|.++|.+.+|-+.. +.+.+...+.+. .+.++..
T Consensus 183 -re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgT--dHp~~rlYdv~T----~Qcfvsa 254 (430)
T KOG0640|consen 183 -RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGT--DHPTLRLYDVNT----YQCFVSA 254 (430)
T ss_pred -hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEec--CCCceeEEeccc----eeEeeec
Confidence 56677788888999999987643321 22 4556678999999998887754 355566666655 3445554
Q ss_pred C--CcCceeEE-Eec-cccEEEEeccceeeeee
Q psy13629 262 T--IFWPNGIA-IDF-NNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 262 ~--~~~P~gla-lD~-~~~rLYwaD~~~~~I~~ 290 (395)
+ .+.-.+++ +.+ ..++||++-++++.|..
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEe
Confidence 2 22222333 222 56899999998887754
No 301
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.48 E-value=4.2e+02 Score=25.67 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=41.4
Q ss_pred CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecc
Q psy13629 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFN 274 (395)
Q Consensus 195 ~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~ 274 (395)
...+|+.+.+-|...+. +.+.=+ ||+..+.+||+--|-..+-+++-.-+| . .++.+..+..+.+.+-++-.
T Consensus 18 d~~~iY~felvG~~P~S----GGDTYN--AV~~vDd~IyFGGWVHAPa~y~gk~~g--~-~~IdF~NKYSHVH~yd~e~~ 88 (339)
T PF09910_consen 18 DSEKIYRFELVGPPPTS----GGDTYN--AVEWVDDFIYFGGWVHAPAVYEGKGDG--R-ATIDFRNKYSHVHEYDTEND 88 (339)
T ss_pred CceEEEEeeeccCCCCC----CCccce--eeeeecceEEEeeeecCCceeeeccCC--c-eEEEEeeccceEEEEEcCCC
Confidence 34567777766655432 222223 344457789988887667777776665 2 34444443333333322222
Q ss_pred ccEEEEec
Q psy13629 275 NRLLYWID 282 (395)
Q Consensus 275 ~~rLYwaD 282 (395)
+=+|.|.+
T Consensus 89 ~VrLLWke 96 (339)
T PF09910_consen 89 SVRLLWKE 96 (339)
T ss_pred eEEEEEec
Confidence 22555554
No 302
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=25.59 E-value=6.3e+02 Score=24.58 Aligned_cols=63 Identities=17% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEe---CCCCCcceEEEecCCCeEEEEeCCCCeEEEEEC-CCCce
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT---NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKKR 209 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~---~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~l-dg~~~ 209 (395)
.+++|+.. .++.|+..+.++.... ...... ..+..|...+ .|+||+.+.. +++++++. +|...
T Consensus 68 dg~v~~~~-~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~-g~~y~ld~~~G~~~ 134 (370)
T COG1520 68 DGTVYVGT-RDGNIFALNPDTGLVK-WSYPLLGAVAQLSGPILGS----DGKIYVGSWD-GKLYALDASTGTLV 134 (370)
T ss_pred CCeEEEec-CCCcEEEEeCCCCcEE-ecccCcCcceeccCceEEe----CCeEEEeccc-ceEEEEECCCCcEE
Confidence 56677762 4557777777765210 000111 1223333332 6778888754 37888888 56543
No 303
>KOG2919|consensus
Probab=25.52 E-value=6.5e+02 Score=24.71 Aligned_cols=150 Identities=11% Similarity=-0.032 Sum_probs=84.7
Q ss_pred EEEEECCCCeEEEEEccCCCCC--ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC--CCceEE---EEec
Q psy13629 143 VCWTDHGTEMISCCTFDGNNVG--SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKV---LYWE 215 (395)
Q Consensus 143 lywsd~~~~~I~~~~~dg~~~~--~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld--g~~~~~---l~~~ 215 (395)
+|.+....+-|+.++.-.+++. .+.--..+.......|++.+.+..||.-. +..|.+++.. |..+.+ +...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcc
Confidence 4444445566776665332210 01111123455678899999999998655 4678888873 443332 2211
Q ss_pred C---CCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeee
Q psy13629 216 D---IDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVM 291 (395)
Q Consensus 216 ~---~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~ 291 (395)
. ..-...++++|....++ |-.. ..++-...-++ ...-.+...+-+...-|-.-.++++||..-.+..+|.+=
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY--~q~~giy~~~~--~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSY--GQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecc--cceeeeEecCC--CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 1 22356688999887555 3332 33344444444 223233333333344455567889999999999999887
Q ss_pred cccccee
Q psy13629 292 DYDGYVR 298 (395)
Q Consensus 292 ~~dG~~~ 298 (395)
|+.-...
T Consensus 279 DiR~~~~ 285 (406)
T KOG2919|consen 279 DIRYSRD 285 (406)
T ss_pred eehhccc
Confidence 7765443
No 304
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=24.90 E-value=8.1e+02 Score=25.56 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=31.8
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
..+++|+..+.|||--.+-.- .++..| -..++..-.=+|+|...|.+=|.-
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~p-----~~~~~r---~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPSP-----WNSHLR---PGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred CceeEcCCCCeEEEeCCCCCC-----CCCCCC---CCCCccceeEEEEccccCCEEEee
Confidence 357999999999988754211 222222 012233334588999999998875
No 305
>KOG0276|consensus
Probab=24.79 E-value=8.9e+02 Score=26.01 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=81.6
Q ss_pred ceeEEEEEeeCCCCCccEEecCCC-CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 105 AYLLDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 105 ~~~~~I~~~~l~~~~~~~~~~~~~-~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+|--++.+.+.+. +..+--.+.. ..+.+-.|-...+ ...+...+..|.+++.+.. ++...........+.|||+
T Consensus 32 LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~---ekV~~FeAH~DyIR~iavH 106 (794)
T KOG0276|consen 32 LYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTG---EKVKTFEAHSDYIRSIAVH 106 (794)
T ss_pred eecCeeEEEeccc-ceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecccc---eeeEEeeccccceeeeeec
Confidence 3444667777665 2221111111 1223334554444 4456667889999999875 4455555566789999999
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
|. .-...|.+..-.|..-+-++.... ..+...-+....+++.|....-|.+.
T Consensus 107 Pt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 107 PT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred CC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 84 444457777888999998887654 34434467789999999998888776
No 306
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=24.74 E-value=1.9e+02 Score=23.76 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=35.1
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 134 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 134 l~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
|+.||.+-.|...|...+.|..-.+.+ ...-.|+|+|+.+|.+.-+.....+-...-..|
T Consensus 12 i~LDp~GYfiI~~d~~~~~i~a~h~~n-------------~I~~~Gla~Dpetge~i~~~g~~~r~~~~~~~G 71 (119)
T PF14251_consen 12 IDLDPAGYFIIYVDREAGEICAEHYTN-------------DIDDKGLAVDPETGEVIPCRGKVKRTPSIVFKG 71 (119)
T ss_pred cccCCCccEEEEEeCCCCeeeHhhccC-------------ccCcccceeCCCCCCEEEEecCCCCceeEEEec
Confidence 567777776766675555443222211 123358999999999887775443333333333
No 307
>KOG0290|consensus
Probab=24.62 E-value=6.2e+02 Score=24.51 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEeCCCCeEEEEECC-------------CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 191 WTDSETNKLEVSSLD-------------GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 191 wtd~~~~~I~v~~ld-------------g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
|.+-..+.|.+.++| |...+.|+ ......++|++...+..+|.+- |....+..+++-. ....+
T Consensus 158 Wne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-AHDKEV~DIaf~~~s~~~FASv-gaDGSvRmFDLR~--leHST 233 (364)
T KOG0290|consen 158 WNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-AHDKEVYDIAFLKGSRDVFASV-GADGSVRMFDLRS--LEHST 233 (364)
T ss_pred cccCCcceeEeecccCeEEEEEEeeccccceeeEEE-ecCcceeEEEeccCccceEEEe-cCCCcEEEEEecc--cccce
Q ss_pred EEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeecc
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCEN 328 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~ 328 (395)
++=+. |.. +..--||-|....-+-+..+-.|+..++......|...+-+=.--..+=|.++++..
T Consensus 234 IIYE~---p~~---~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh 298 (364)
T KOG0290|consen 234 IIYED---PSP---STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH 298 (364)
T ss_pred EEecC---CCC---CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC
No 308
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=23.63 E-value=6e+02 Score=23.67 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=58.0
Q ss_pred EEEEEEcCCC-EEEEEECCCCeEEEEEccCCCCCceEEEEeCCC--CCcceEEEecCCCeEEEEeCCC---CeE-EEEEC
Q psy13629 132 AAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL--ITPDGLAIDWLTEKLYWTDSET---NKL-EVSSL 204 (395)
Q Consensus 132 ~gl~~d~~~~-~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~--~~p~glAVD~~~~~LYwtd~~~---~~I-~v~~l 204 (395)
.-+|.|..+= .||-+....+.|....+|-..+.-.++.-..-. ..-+..-| -|.||.++... .+| .++|+
T Consensus 126 iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt 202 (250)
T PF02191_consen 126 IDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDT 202 (250)
T ss_pred EEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEEC
Confidence 4555663331 233334445578888888655433333322211 12233333 58999999654 344 66677
Q ss_pred CCCceE---EEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 205 DGKKRK---VLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 205 dg~~~~---~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
...... ..+.........|--+|.++.||.=|
T Consensus 203 ~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 203 YTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred CCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 644333 22223456678899999999999766
No 309
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.57 E-value=6.9e+02 Score=24.30 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceE---EEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec-CCCCcceEEEE
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRK---VLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM-NGDPRHRKVIV 259 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~---~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~-dG~~~~~~~lv 259 (395)
++++|+.. ..+.|...++++.... .+.. ....- ++..+ .|+||+.+|.. +++..+. +|+ .....
T Consensus 68 dg~v~~~~-~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~--~~~~~--~G~i~~g~~~g--~~y~ld~~~G~---~~W~~ 137 (370)
T COG1520 68 DGTVYVGT-RDGNIFALNPDTGLVKWSYPLLGAVAQLSG--PILGS--DGKIYVGSWDG--KLYALDASTGT---LVWSR 137 (370)
T ss_pred CCeEEEec-CCCcEEEEeCCCCcEEecccCcCcceeccC--ceEEe--CCeEEEecccc--eEEEEECCCCc---EEEEE
Confidence 56666552 2345666665554422 1110 11222 23333 77899888653 7888888 662 11221
Q ss_pred ecCC--cCceeEEEeccccEEEEeccceeeeeeeccc-ccee
Q psy13629 260 DSTI--FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVR 298 (395)
Q Consensus 260 ~~~~--~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~ 298 (395)
.... .+..+..+ .++.+|+.. ..+.+..++.+ |..+
T Consensus 138 ~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~ 176 (370)
T COG1520 138 NVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLK 176 (370)
T ss_pred ecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEE
Confidence 1111 11222222 356677664 34566666665 5443
No 310
>KOG0265|consensus
Probab=23.54 E-value=6.8e+02 Score=24.24 Aligned_cols=175 Identities=10% Similarity=-0.002 Sum_probs=92.0
Q ss_pred EEEEEeeCCC-CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
+.|...+..+ .+++..+.-..+.+.++.|..+++.||-.. .++++..++..... ...-....-.-.+.+...-.+
T Consensus 69 r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-tDk~v~~wD~~tG~---~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-TDKTVRGWDAETGK---RIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-CCceEEEEecccce---eeehhccccceeeecCccccC
Confidence 4555556555 355666666778889999999998888665 78889988887541 111111112223344433334
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
-.|.-+-+..+++.+.|+..+....+. ++--+-.++++.-....++-. +-...|...++-- ....-+...+.--.
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f~d~s~qv~sg--gIdn~ikvWd~r~--~d~~~~lsGh~DtI 219 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGFKDTSDQVISG--GIDNDIKVWDLRK--NDGLYTLSGHADTI 219 (338)
T ss_pred CeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEecccccceeec--cccCceeeecccc--CcceEEeecccCce
Confidence 455555566788888888765544333 222333455554444444321 1123445555511 01111222222345
Q ss_pred eeEEEeccccEEEEeccceeeeeeec
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.||.+.+.+.+| -+++-++++.+.+
T Consensus 220 t~lsls~~gs~l-lsnsMd~tvrvwd 244 (338)
T KOG0265|consen 220 TGLSLSRYGSFL-LSNSMDNTVRVWD 244 (338)
T ss_pred eeEEeccCCCcc-ccccccceEEEEE
Confidence 677777555543 3444444444433
No 311
>PRK00969 hypothetical protein; Provisional
Probab=23.46 E-value=1.3e+02 Score=30.99 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=41.3
Q ss_pred eeeeeeeccCCccccceeeeecccee--cceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeEEEe
Q psy13629 306 INLELYCNVFPKTCENFMKHCENGYY--NGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSM 383 (395)
Q Consensus 306 ~~i~Lf~d~ap~t~~nf~~l~~~g~y--~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~l~m 383 (395)
+.++||.+.||.|++.|..+..=-.. --..+|-..++-.+--|+.. .++.+.+|+.|.-+- ..|.++|
T Consensus 380 i~IeLydd~AP~s~~yFR~~tGL~~~~VG~L~v~F~~~d~~lFk~~~~---------~~k~liPEN~P~~~V-~ag~Igv 449 (508)
T PRK00969 380 IEIELYDDKAPRTVWYFRKVTGLKTKPVGKLPVYFKYEDTYLFKGNIE---------YAKGLLPENTPEDKV-KAGEIGV 449 (508)
T ss_pred EEEEEcCcCCchHHHHHHHhcCCcccccceeEEEEEeCCeEEEccChh---------hccccCCCCCCCCcc-ccceEee
Confidence 49999999999999999987642110 01233333444333323221 234455666655444 3788877
Q ss_pred ecC
Q psy13629 384 ANS 386 (395)
Q Consensus 384 a~~ 386 (395)
-|.
T Consensus 450 TN~ 452 (508)
T PRK00969 450 TNM 452 (508)
T ss_pred ech
Confidence 665
No 312
>KOG0284|consensus
Probab=23.33 E-value=7.8e+02 Score=24.86 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=87.5
Q ss_pred ccCcccccccCCCCceeE-----EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc
Q psy13629 91 VQERCSFEKLQPDGAYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 165 (395)
Q Consensus 91 ~~~~C~~~~~~~~~~~~~-----~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~ 165 (395)
++.+|.+-.+ .|.+|+. .|++.+.....+..++...--.+.+++|++..+.|+ +...++.|.-.+...++ .
T Consensus 181 eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia-sgskDnlVKlWDprSg~--c 256 (464)
T KOG0284|consen 181 EAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA-SGSKDNLVKLWDPRSGS--C 256 (464)
T ss_pred hhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE-EccCCceeEeecCCCcc--h
Confidence 4455555455 4666664 667766554334444555555688999999887665 44466677777766432 1
Q ss_pred eEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEE
Q psy13629 166 KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 166 ~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~ 245 (395)
.-++. .--+...++..... ++.--|-+....+.++|+......-.....-...+.++-+|...-||.+- |....|.-
T Consensus 257 l~tlh-~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg-g~Dgsvvh 333 (464)
T KOG0284|consen 257 LATLH-GHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG-GSDGSVVH 333 (464)
T ss_pred hhhhh-hccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec-cCCCceEE
Confidence 11111 11234556666653 35556777788899999873222112212345567777788888888775 43333443
Q ss_pred EecC
Q psy13629 246 GAMN 249 (395)
Q Consensus 246 ~~~d 249 (395)
...+
T Consensus 334 ~~v~ 337 (464)
T KOG0284|consen 334 WVVG 337 (464)
T ss_pred Eecc
Confidence 3333
No 313
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=23.18 E-value=1e+03 Score=26.22 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=32.3
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
..+++|...+.+||--.+.. -+..|..++.. .+...-.=+|+|+.+|.+=|.-
T Consensus 378 ~~~s~D~~~glvy~ptGn~~----pd~~g~~r~~~--~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 378 SVASYDEKLGLVYLPMGNQT----PDQWGGDRTPA--DEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred CceEEcCCCCeEEEeCCCcc----ccccCCccccC--cccccceEEEEeCCCCceEEEe
Confidence 56899999999998553211 11223333211 1222334489999999999875
No 314
>PRK10115 protease 2; Provisional
Probab=21.02 E-value=1.1e+03 Score=25.60 Aligned_cols=178 Identities=9% Similarity=0.030 Sum_probs=90.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC-----CCCeEEEEEccCCCCCceEEEEeCCCCCcceE--E
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH-----GTEMISCCTFDGNNVGSKHNVITNGLITPDGL--A 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~-----~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl--A 181 (395)
+|.++++.++.......+..+ .+++|.++++.+|++-. ....|++.++.... ....++......+..+ .
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~--~~d~lv~~e~~~~~~~~~~ 229 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA--SQDELVYEEKDDTFYVSLH 229 (686)
T ss_pred EEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh--hHCeEEEeeCCCCEEEEEE
Confidence 778888875322222223333 56899888888888743 22578888887541 1233343332222222 2
Q ss_pred EecCCCeEEEEe--CCCCeEEEEEC---CCCceEEEEecCCCCceeEEEeCCCCeEEE-EeeC-CCCeEEEEecCCCCcc
Q psy13629 182 IDWLTEKLYWTD--SETNKLEVSSL---DGKKRKVLYWEDIDQPRAIALVPQDSIMFW-TDWG-EVPKIERGAMNGDPRH 254 (395)
Q Consensus 182 VD~~~~~LYwtd--~~~~~I~v~~l---dg~~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~-~~~~I~~~~~dG~~~~ 254 (395)
....++.+...- ...+.+..++. ++.. ..++......-..+. + ..+.+|+ |+++ ...+|.++++++. ..
T Consensus 230 ~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~-~~ 305 (686)
T PRK10115 230 KTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDE-QQ 305 (686)
T ss_pred EcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCc-cc
Confidence 222344443222 22345666663 3332 233323333333333 3 2455554 4554 5678888888752 23
Q ss_pred eEEEEecC-CcCceeEEEeccccEEEEec--cceeeeeeeccccc
Q psy13629 255 RKVIVDST-IFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGY 296 (395)
Q Consensus 255 ~~~lv~~~-~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~ 296 (395)
-+.++... -....++.+. ++.|+++- ....++..++.++.
T Consensus 306 ~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 306 WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC
Confidence 35555542 2234555555 56666653 44566677776543
No 315
>KOG4497|consensus
Probab=20.42 E-value=8.3e+02 Score=24.07 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=72.9
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
+..+.=|.|..+.-.+.+.-.....|+..++... +..--+..+......+.-.+.+++|--+....-+|.|-++...
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 4555666777667667766666778888887765 3334445555555556667778888777777889999999887
Q ss_pred ceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 208 ~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
...-+- ..-....|++++|+.++.-...
T Consensus 125 ~~~~~~-~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 125 KGYLLP-HPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred eeEEec-ccccCceeEEECCCCceeeeee
Confidence 664332 4444558999999888776655
Done!