RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13629
(395 letters)
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 214 bits (546), Expect = 2e-68
Identities = 74/100 (74%), Positives = 89/100 (89%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GYVRL T+ G +NLEL+C++ PKTCENF++ C+ YY+GT FHRSIRNF+IQGGDPTGTG
Sbjct: 20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 79
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
TGGES WGKPF+DEF+PN +HTGRG+LSMANSGPN+N SQ
Sbjct: 80 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ 119
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 213 bits (544), Expect = 3e-68
Identities = 59/100 (59%), Positives = 73/100 (73%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GY+ + T+LG +ELY PKTC NF CE G+Y+ T FHR I NF+IQGGDPTGTG
Sbjct: 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 98
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG+SI+G+ FEDE HTG G+LSM+N+GPNTN+SQ
Sbjct: 99 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 138
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 210 bits (537), Expect = 1e-67
Identities = 51/100 (51%), Positives = 66/100 (66%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
+ T++G I++ L+ KT +NF H NGYYN FHR I++FM+Q GDP+G G
Sbjct: 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 65
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
TGGESIWG FEDEF + H+ ++SMAN GPNTN SQ
Sbjct: 66 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQ 105
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 211 bits (539), Expect = 1e-67
Identities = 50/100 (50%), Positives = 68/100 (68%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
G V L T+ G I++EL+ PK C NF++ C YY+ T FHR + F++QGGDPTGTG
Sbjct: 25 GKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTG 84
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
+GGESI+G PF+DEF RG+++MAN+G + N SQ
Sbjct: 85 SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQ 124
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 210 bits (537), Expect = 1e-67
Identities = 57/100 (57%), Positives = 64/100 (64%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
+ TS+G I+ +L+ PKT ENF H NGYYNG FHR I+ FMIQ GDPTGTG
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTG 81
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GGESIWG FEDEF H LSMAN+G NTN SQ
Sbjct: 82 MGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 121
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 208 bits (533), Expect = 6e-67
Identities = 63/99 (63%), Positives = 74/99 (74%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQGGDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 207 bits (528), Expect = 2e-66
Identities = 59/99 (59%), Positives = 71/99 (71%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L T +G I +E++C PKTCENF+ C + YYNG FHR+I+ FM+Q GDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SIWGK FEDE+ H RGV+SMAN+GPNTN SQ
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ 100
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 208 bits (532), Expect = 2e-66
Identities = 63/99 (63%), Positives = 74/99 (74%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQGGDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 203 bits (518), Expect = 3e-64
Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGG-----D 349
GY+R+VT+ G +N+EL+ ++ P+ C++F++ C Y++ T FHR IRNFMIQGG
Sbjct: 7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQ 66
Query: 350 PTGTGTGGESI-------WGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
P+ +S G PFEDEF H G GVLSMAN G ++N S+
Sbjct: 67 PSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSE 118
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 200 bits (512), Expect = 1e-63
Identities = 54/106 (50%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Query: 293 YDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTG 352
Y VR++T+ G + EL+C+ PK C+NF+ +GYY T FH++I+ F+IQGGDPTG
Sbjct: 15 YFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTG 74
Query: 353 TGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSG----PNTNTSQ 394
TG GGESI+G+ F+DE P + RG+LSMA+ G PNTN SQ
Sbjct: 75 TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQ 120
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 194 bits (495), Expect = 2e-60
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
G V L TSLG +++EL+ P C NF++ C GYY T FHR +++F++QGGDPTGTG
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTG 81
Query: 355 TGG--ESIWGKPFEDEFKPNYTHTGRGVLSMANSGPN--------------TNTSQ 394
GG + GKPF+ E P RG++ +AN G + TN +Q
Sbjct: 82 RGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQ 137
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 205 bits (521), Expect = 9e-60
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 3/178 (1%)
Query: 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDGLAIDWLTEKLY 190
A+D + + W+D MI D + S + VI+ + PDGLA+DW+ +Y
Sbjct: 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY 468
Query: 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250
WTDS + V+ G KRK L+ E +PRAI + P M+WTDWG KI++G +NG
Sbjct: 469 WTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+V I WPNGI +D + LYW+D +L I +D +G R L
Sbjct: 529 --VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584
Score = 97.6 bits (242), Expect = 3e-22
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + + P + +D + +
Sbjct: 456 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFM 510
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 511 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISS--I 567
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+ + +RK I++ + ++ ++W D I + + ++
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 627
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 628 PEDMVLFHQLTQPRGVNWCERTTLS 652
Score = 92.9 bits (230), Expect = 1e-20
Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + + + AI + WTD GT I +G ++ ++
Sbjct: 477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 533
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
+ +FWTD I N ++ + P + +
Sbjct: 594 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVL 633
Score = 71.4 bits (174), Expect = 1e-13
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 144 CWTDHGTEMISCCT-----FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198
G+ T S++ + L L + + ++YW+D
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
Query: 199 LEVSSLDGK----KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
+ + LD + DI P +A+ S ++WTD + G
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-GTVSVADTKG--VK 486
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV 300
RK + P I +D + +YW D G I+ +G
Sbjct: 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533
Score = 58.3 bits (140), Expect = 2e-09
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 544 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246
WTD + ++ L E++ P + L Q + +W E + G
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNG 654
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 205 bits (522), Expect = 2e-59
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 3/189 (1%)
Query: 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDG 179
++I +L A+D + + W+D MI D + S + VI+ + PDG
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
LA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI + P M+WTDWG
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299
KI++G +NG +V I WPNGI +D + LYW+D +L I +D +G R
Sbjct: 536 PAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 593
Query: 300 VTSLGHINL 308
L
Sbjct: 594 TILEDEKRL 602
Score = 101 bits (253), Expect = 1e-23
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + + P + +D + +
Sbjct: 474 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFM 528
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 529 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISS--I 585
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+ + +RK I++ + ++ ++W D I + + ++
Sbjct: 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 645
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 646 PEDMVLFHNLTQPRGVNWCERTTLS 670
Score = 93.0 bits (230), Expect = 1e-20
Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 495 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 551
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 611
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
+ +FWTD I N ++ + P + +
Sbjct: 612 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVL 651
Score = 71.4 bits (174), Expect = 1e-13
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
S+ + T D + S + N L + + ++YW+D
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN----VVALDTEVASNRIYWSDL 443
Query: 195 ETNKLEVSSLDGK----KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250
+ + LD + DI P +A+ S ++WTD + G
Sbjct: 444 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-GTVSVADTKG 502
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV---TSLGHI 306
RK + P I +D + +YW D G I+ +G ++
Sbjct: 503 --VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560
Query: 307 N 307
N
Sbjct: 561 N 561
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 193 bits (492), Expect = 5e-59
Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 9/210 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159
AYL ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 2 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 160 GNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+
Sbjct: 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
+PRAI + P M+WTDWG KI++G +NG +V I WPNGI +D + L
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRL 178
Query: 279 YWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
YW+D +L I +D +G R L
Sbjct: 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRL 208
Score = 83.9 bits (207), Expect = 3e-18
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 157
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 217
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276
+ +FWTD I N ++ + P + + N
Sbjct: 218 EDKVFWTDIIN-EAIFS--ANRLTGSDVNLLAENLLSPEDMVLFHNLT 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 191 bits (487), Expect = 7e-59
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 104 GAYLL-----DIRIANLSRP-----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMI 153
G +LL I L R + + + + +V WTD I
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 154 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 213
+ G +I L +P+G+A+D L ++WTDS+ +++EV+ +DG +R+VL+
Sbjct: 61 GRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117
Query: 214 WEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID 272
+ PR I P ++WTDW + PKIE M+G +R+++ + PNG+ D
Sbjct: 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFD 175
Query: 273 FNNRLLYWIDGRLTFIEVMDYDGYVR--LVTSLGH 305
+ L W+D E ++ R ++ L +
Sbjct: 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
Score = 95.3 bits (237), Expect = 1e-22
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 10/168 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKH 167
I +A + + V L I + + WTD + I DG N
Sbjct: 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---R 159
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
+ + L P+GL D + +L W D+ T++ E + R+ + + P A+
Sbjct: 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY- 217
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNN 275
+++TDW + + + GI I +
Sbjct: 218 -GKNLYYTDWKT-NSVIAMDLAI-SKEMDTFHPHKQTRLYGITIALSQ 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 195 bits (496), Expect = 7e-59
Identities = 70/161 (43%), Positives = 111/161 (68%), Gaps = 5/161 (3%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
D+++++ +V W+D + I +G+NV V++ GL +P GLA+DW+ +KLYWTDS
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDS 178
Query: 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
T+++EV++LDG RKVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G
Sbjct: 179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--G 236
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
R++I D+ +FWPNG+ ID+ R +YW+D + IE + DG
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277
Score = 86.7 bits (214), Expect = 6e-19
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I +ANL + V + + LE+ AI + + + WTD G I + DG+ +
Sbjct: 183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRI 239
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI V +
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-VFE 298
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
DS+ +WTDW I N + I+ + + +P I
Sbjct: 299 DSL-YWTDWHT-KSINS--ANKFTGKNQEIIRNKLHFPMDIHT 337
Score = 76.3 bits (187), Expect = 2e-15
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 144 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
+ + + I D E ++W+D +++ ++
Sbjct: 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD---FHHRRELVFWSDVTLDRILRAN 144
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263
L+G + + ++ P +A+ ++WTD G +IE ++G HRKV++ ++
Sbjct: 145 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS-RIEVANLDG--AHRKVLLWQSL 201
Query: 264 FWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV 300
P IA+ +YW D G IE DG R +
Sbjct: 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 191 bits (487), Expect = 3e-58
Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 10/209 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 158
LL D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F
Sbjct: 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF 64
Query: 159 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++D
Sbjct: 65 NKTE--SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
QPRAIAL P M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + L
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 279 YWIDGRLTFIEVMDYDGYVRLVTSLGHIN 307
YW D +L FI + DG R G +
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLP 209
Score = 86.3 bits (213), Expect = 5e-19
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG++ +
Sbjct: 103 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFI 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 217
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYW 280
+ I++WTDW I N + S IF P I R
Sbjct: 218 EDILYWTDWST-HSILA--CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNA 266
Score = 51.6 bits (123), Expect = 2e-07
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 5/128 (3%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 203
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ L P L + + LYWTD T+ + + + DI P I Q
Sbjct: 204 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 261
Query: 230 SIMFWTDW 237
T+
Sbjct: 262 RQPNATNP 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 192 bits (489), Expect = 1e-57
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 134 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWT 192
+D + + W+D MI D + S + VI+ + PDGLA+DW+ +YWT
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 176
Query: 193 DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252
DS + V+ G KRK L+ E+ +PRAI + P M+WTDWG KI++G +NG
Sbjct: 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-- 234
Query: 253 RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
+V I WPNGI +D + LYW+D +L I +D +G
Sbjct: 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277
Score = 106 bits (264), Expect = 1e-25
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + P + +D + +
Sbjct: 162 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFM 216
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISSIDV 275
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
NG +RK I++ + ++ ++W D I + + ++
Sbjct: 276 NG--GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLS 358
Score = 92.2 bits (228), Expect = 9e-21
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 239
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 299
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276
+ +FWTD I N ++ + P + + N
Sbjct: 300 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVLFHNLT 344
Score = 56.4 bits (135), Expect = 6e-09
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 142 MVCWTDHGTEMISCCTFDG-------NNVGS-KHNVITNGLITPDGLAIDWLTEKLYWTD 193
E I C N G K + P A + Y
Sbjct: 29 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 88
Query: 194 SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG--D 251
+ +++ +LD + L ++ A+ + ++W+D + I ++
Sbjct: 89 TNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHG 146
Query: 252 PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
++ I P+G+A+D+ + +YW D L + V D G R
Sbjct: 147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 195
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 190 bits (482), Expect = 1e-54
Identities = 94/208 (45%), Positives = 133/208 (63%), Gaps = 5/208 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F+ S
Sbjct: 19 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQ 76
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 77 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 136
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 137 SSGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194
Query: 288 IEVMDYDGYVRLVTSLGHINLELYCNVF 315
I + DG R G + +F
Sbjct: 195 IHKSNLDGTNRQAVVKGSLPHPFALTLF 222
Score = 175 bits (445), Expect = 1e-49
Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 5/176 (2%)
Query: 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184
++D+ AIDY + + WTD I DG+ V+T + PDG+A+DW
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDW 401
Query: 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIE 244
+ LYWTD+ T+++EV+ L+G RK+L ED+++PRAI L P M+WTDWGE+PKIE
Sbjct: 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461
Query: 245 RGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
R A++G R V+V++++ WPNG+A+D++ +YW D + IEVM+ DG R V
Sbjct: 462 RAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
Score = 90.7 bits (224), Expect = 6e-20
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 8/177 (4%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
+ + + D + + + + + D + +YWTD
Sbjct: 310 KTCKDGATELLLLARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
E + S +DG + + I P IA+ ++WTD G +IE +NG
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGT-DRIEVTRLNG--TM 425
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV---TSLGHIN 307
RK+++ + P I +D +YW D G + IE DG R+V TSLG N
Sbjct: 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPN 482
Score = 83.3 bits (205), Expect = 2e-17
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISCCTFDGNNVGSKHN 168
I + L+ ++ + I +DLEE AI + WTD G I DG++ +
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD---RVV 472
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++ L P+GLA+D+ K+YW D++T+K+EV + DG R+VL + I L+
Sbjct: 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD 532
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261
++WTDW IER ++ R+VI+D
Sbjct: 533 Y--VYWTDWQR-RSIER--VHKRSAEREVIIDQ 560
Score = 47.9 bits (113), Expect = 4e-06
Identities = 37/234 (15%), Positives = 62/234 (26%), Gaps = 53/234 (22%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 208
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ L P L + + LYWTD T+ + + + DI P I Q
Sbjct: 209 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 230 SIMFWTDWGEVPK----------------------------------------------- 242
T+ +
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 243 -IERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
+ R +++ V+ I I D +YW D + I DG
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 176 bits (447), Expect = 7e-54
Identities = 47/116 (40%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENG---------------YYNGTKFHR 338
L T+ G I + L+ N PKT NF+ + +Y+G FHR
Sbjct: 23 TATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHR 82
Query: 339 SIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
I+ FMIQGGDPTGTG GG G F DEF P +L+MAN+GP TN SQ
Sbjct: 83 VIQGFMIQGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQ 135
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 178 bits (452), Expect = 8e-53
Identities = 76/196 (38%), Positives = 123/196 (62%), Gaps = 5/196 (2%)
Query: 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 179
+ ++ +LE A+D+++++ +V W+D + I +G+NV V++ GL +P G
Sbjct: 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGG 120
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
LA+DW+ +KLYWTDS T+++EV++LDG RKVL W+ +++PRAIAL P + ++WTDWG
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299
P+IE +M+G R++I D+ +FWPNG+ ID+ R +YW+D + IE + DG R
Sbjct: 181 TPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 300 VTSLGHINLELYCNVF 315
+ VF
Sbjct: 239 AVISQGLPHPFAITVF 254
Score = 84.2 bits (207), Expect = 3e-18
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 144 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
I + + ++ N L L E ++W+D +++ ++
Sbjct: 46 VLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 101
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263
L+G + + ++ P +A+ ++WTD G +IE ++G HRKV++ ++
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT-SRIEVANLDG--AHRKVLLWQSL 158
Query: 264 FWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVR 298
P IA+ +YW D G IE DG R
Sbjct: 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 179 bits (455), Expect = 7e-51
Identities = 75/205 (36%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 102 PDGAYLL-----DIRIANL-SRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 155
A+LL DIR +L + + ++E +A+D+ + + WTD + IS
Sbjct: 4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 156 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 215
+G+ + +V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+
Sbjct: 64 AFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120
Query: 216 DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNN 275
D+D PRA+AL P + M+WT+WG PKI+R D R +V + NG+ ID+
Sbjct: 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDR--AAMDGSERTTLV-PNVGRANGLTIDYAK 177
Query: 276 RLLYWIDGRLTFIEVMDYDGYVRLV 300
R LYW D IE + G R V
Sbjct: 178 RRLYWTDLDTNLIESSNMLGLNREV 202
Score = 169 bits (428), Expect = 4e-47
Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 8/233 (3%)
Query: 89 MPVQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWT 146
CS + I + P I I L AIDY + W
Sbjct: 298 NADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWI 357
Query: 147 DHGTEMISCCTFDGNN---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
D MI DG+ V N I P L+ID + +YWT TN + V+
Sbjct: 358 DSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR 417
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDST 262
LDG+ V+ + D+PRA+ + P+ M++T+ PKIER A++G R+V+ S
Sbjct: 418 LDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG--TEREVLFFSG 475
Query: 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVF 315
+ P +A+D L+W D L IE D G R+V +I + VF
Sbjct: 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF 528
Score = 72.5 bits (177), Expect = 5e-14
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I ++ L + V + KDL+ A+ + + WT+ G + I DG+
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----T 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ +D+ P +
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI-ADDLPHPFGLTQYQD 218
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282
++WTDW IER N + I+ + + I + ++R W +
Sbjct: 219 Y--IYWTDWSR-RSIER--ANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNE 267
Score = 55.6 bits (133), Expect = 2e-08
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A L + V L + A+ + + W D I G N + +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVL 514
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ ++ P GL + LYW D + +E + G++ + I Q I V +
Sbjct: 515 EDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKEL 572
Query: 230 SIMFWTDWGEVPKIERGAMNGDPRH 254
++ + NG H
Sbjct: 573 NLQEYRQH------PCAQDNGGCSH 591
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 144 bits (366), Expect = 8e-42
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
+G + L+ PKT +NF+ E G+ Y +KFHR I++FMIQGGD T G GTGG+
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 89 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQ 123
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 143 bits (364), Expect = 1e-41
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I +EL ++ P+T ENF C E G+ Y+ FHR I FM QGGD G GTGG+
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F+DE F+ H G GVLSMANSGPNTN SQ
Sbjct: 84 SIYGRKFDDENFQ--LRHEGFGVLSMANSGPNTNGSQ 118
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 143 bits (364), Expect = 1e-41
Identities = 50/98 (51%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGG 357
+G I L+ PKT +NF + C G Y + FHR I NFMIQGGD T G GTGG
Sbjct: 20 KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG 79
Query: 358 ESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G F DE F H +G+LSMAN+GPNTN SQ
Sbjct: 80 RSIYGDKFADENFS--RKHDKKGILSMANAGPNTNGSQ 115
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 143 bits (362), Expect = 2e-41
Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I + L +V P T ENF C E G+ + G+ FHR I FM QGGD T GTGG+
Sbjct: 25 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+GK F+DE F HTG G+LSMANSGPNTN SQ
Sbjct: 85 SIYGKKFDDENFI--LKHTGPGLLSMANSGPNTNGSQ 119
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 143 bits (362), Expect = 2e-41
Identities = 61/104 (58%), Positives = 68/104 (65%), Gaps = 14/104 (13%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY--------YNGTKFHRSIRNFMIQGGDPT- 351
G I +ELY +V PKT NF C ENG + G+KFHR I NFMIQGGD T
Sbjct: 17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G+ F DE FK HTG GVLSMAN+GPNTN SQ
Sbjct: 77 GNGTGGESIYGEKFPDENFK--EKHTGPGVLSMANAGPNTNGSQ 118
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 142 bits (361), Expect = 2e-41
Identities = 54/97 (55%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q GD T GTGG+
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G F DE F H G GVLSMAN+GPNTN SQ
Sbjct: 77 SIYGSRFPDENFT--LKHVGPGVLSMANAGPNTNGSQ 111
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 143 bits (362), Expect = 2e-41
Identities = 54/104 (51%), Positives = 61/104 (58%), Gaps = 14/104 (13%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY--------YNGTKFHRSIRNFMIQGGDPT- 351
G I +EL+ + P T ENF C E G Y G+ FHR I FMIQGGD T
Sbjct: 33 AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTR 92
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G F DE F YTH +LSMAN+GPNTN SQ
Sbjct: 93 GDGTGGESIYGSKFRDENFV--YTHDAPFLLSMANAGPNTNGSQ 134
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 143 bits (363), Expect = 3e-41
Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG I ++L ++ PKT +NF C G Y G+ FHR I FM+QGGD T GTGG
Sbjct: 41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE F+ HT G+LSMAN G +TN SQ
Sbjct: 101 SIYGEKFPDENFE--LKHTKEGILSMANCGAHTNGSQ 135
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 142 bits (360), Expect = 3e-41
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I +LY PKT +NF + ++G+ Y + FHR I FM+QGGD T GTGG+
Sbjct: 16 EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE F+ HT G+LSMAN+G NTN SQ
Sbjct: 76 SIYGEKFADENFQ--VKHTKPGLLSMANAGANTNGSQ 110
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 142 bits (361), Expect = 4e-41
Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG ++ EL+ + PKT ENF E G+ Y G+ FHR I FM QGGD T GTGG+
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ FEDE F HTG G+LSMAN+GPNTN SQ
Sbjct: 96 SIYGEKFEDENFI--LKHTGPGILSMANAGPNTNGSQ 130
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 141 bits (359), Expect = 6e-41
Identities = 48/105 (45%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
G + EL+ +V PKTCENF C E G +Y FHR +++FM+QGGD +
Sbjct: 23 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G GGESI+G FEDE F H +LSMAN G +TN SQ
Sbjct: 83 EGNGRGGESIYGGFFEDESFA--VKHNKEFLLSMANRGKDTNGSQ 125
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 141 bits (357), Expect = 1e-40
Identities = 50/102 (49%), Positives = 63/102 (61%), Gaps = 12/102 (11%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY------YNGTKFHRSIRNFMIQGGDPT-GT 353
+G + +EL+ +V PKT ENF + C E Y G+ FHR I++FMIQGGD G
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 354 GTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
GTG SI+ PF DE FK H+ G+LSMANSGP+TN Q
Sbjct: 84 GTGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQ 123
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 141 bits (357), Expect = 1e-40
Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHC--ENG-------YYNGTKFHRSIRNFMIQGGDPT- 351
+ G I EL+ ++ P+TCENF C E +Y + FHR I FM QGGD T
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN 75
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G+GGESI+G+ F DE F H G+LSMAN+GPNTN+SQ
Sbjct: 76 GNGSGGESIYGRSFTDENFN--MKHDQPGLLSMANAGPNTNSSQ 117
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 142 bits (360), Expect = 1e-40
Identities = 49/102 (48%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY------YNGTKFHRSIRNFMIQGGDPT-GT 353
LG EL+ N+ PKT ENF + C E Y T FHR I+ FMIQGGD
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 354 GTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G+G SI+G+ F+DE F H G+LSMANSGPNTN Q
Sbjct: 133 GSGSLSIYGEKFDDENFD--IKHDKEGLLSMANSGPNTNGCQ 172
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 140 bits (356), Expect = 2e-40
Identities = 53/105 (50%), Positives = 64/105 (60%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
G I +ELY ++ P+TC NF+ C G +Y G+ FHR I+NFMIQGGD T
Sbjct: 20 AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G F+DE F H V+SMAN GPNTN SQ
Sbjct: 80 KGDGTGGESIYGGMFDDEEFV--MKHDEPFVVSMANKGPNTNGSQ 122
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 141 bits (357), Expect = 2e-40
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY---------YNGTKFHRSIRNFMIQGGDPT 351
+G I +L+ ++ PKTC+NF+ C E G Y G+ FHR ++NFMIQGGD +
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G GGESI+G F+DE F H +LSMAN G +TN SQ
Sbjct: 93 EGNGKGGESIYGGYFKDENFI--LKHDRAFLLSMANRGKHTNGSQ 135
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 138 bits (350), Expect = 8e-40
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQGG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+P ++E +T RG L+MA P++ T+Q
Sbjct: 62 KA--TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQ 97
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 138 bits (349), Expect = 1e-39
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L T+ G I LEL PKT ENF+ + + G+Y+GT FHR I FMIQGG
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+ P +E + ++MA + P++ T+Q
Sbjct: 66 KPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQ 101
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 137 bits (348), Expect = 2e-39
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG I + L+ P T ENF + C E+G+ Y + FHR I+NFMIQGGD T GTGG+
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE H G LSMAN+GPNTN SQ
Sbjct: 85 SIYGEKFADENLN--VKHF-VGALSMANAGPNTNGSQ 118
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 139 bits (352), Expect = 7e-38
Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
+G I LEL+ ++ PKT ENF C E G ++ G FHR I+ FMIQGGD +
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
GTGGESI+G+ FEDE F Y H G+LSMAN+G NTN SQ
Sbjct: 89 NQNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQ 131
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 132 bits (335), Expect = 1e-37
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQGG T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+ P ++E +T RG ++MA + ++ TSQ
Sbjct: 67 KKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQ 102
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 132 bits (333), Expect = 2e-36
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 27/119 (22%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG------------------YYNGTKFHRSIRN 342
+G + ++L+ + FP ENF++ + Y G KFH + N
Sbjct: 28 IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87
Query: 343 FMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYT--HTGRGVLSMA----NSGPNTNTSQ 394
I GD G+ +++ +Y H +G+LS+ SG S
Sbjct: 88 NYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDST 146
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 111 bits (278), Expect = 1e-27
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 28/124 (22%)
Query: 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG- 356
+ L P T NF+ E +Y+G + R F++Q GDP G G
Sbjct: 182 NPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGF 240
Query: 357 --------------------GESIWGKPFED----EFKPNYTHTGRGVLSMANSG--PNT 390
+G E+ + + G ++MA ++
Sbjct: 241 IDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDS 300
Query: 391 NTSQ 394
+SQ
Sbjct: 301 GSSQ 304
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 79.4 bits (195), Expect = 9e-17
Identities = 21/176 (11%), Positives = 53/176 (30%), Gaps = 21/176 (11%)
Query: 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEM---ISCCTFDGNNVGSKHNVITNGLITPDG 179
L+ I + + + + T+ + DG +
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--------IKNHYL 149
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
+ Y+ + + +L + + Y + +P + D+ +++ D
Sbjct: 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD----DTNVYYMDVNR 205
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
I +N + + V+ ++ I N + + Y G + V+ DG
Sbjct: 206 DNAIVH--VNINNPNPVVLTEANIEHYNVY----GSLIFYQRGGDNPALCVVKNDG 255
Score = 39.7 bits (92), Expect = 0.001
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 17/151 (11%)
Query: 164 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY--------WE 215
GS + ++N I+ +Y+ + K+ + R L
Sbjct: 46 GSNIHKLSNDTAM----YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST 101
Query: 216 DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNN 275
+D I + +++ + + D +K I + + ++
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN-----HYLFTCNTSD 156
Query: 276 RLLYWIDGRLTFIEVMDYDGYVRLVTSLGHI 306
R Y+ + + + D + +
Sbjct: 157 RYFYYNNPKNGQLYRYDTASQSEALFYDCNC 187
Score = 39.7 bits (92), Expect = 0.001
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 145 WTDHGTEM-ISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
+ D + I + N V+T I + + Y + L V
Sbjct: 200 YMDVNRDNAIVHVNINNPNP----VVLTEANIEHYNVYGSLI---FYQRGGDNPALCVVK 252
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238
DG K L + I + Q +++TD+
Sbjct: 253 NDGTGFKELA---KGEFCNINVTSQY--VYFTDFV 282
Score = 32.0 bits (72), Expect = 0.33
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 145 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204
+ DG + + G + I+ ++ +Y+TD +NK +S
Sbjct: 240 QRGGDNPALCVVKNDG----TGFKELAKG----EFCNINVTSQYVYFTDFVSNKEYCTST 291
Query: 205 DGKKRKVLY 213
Sbjct: 292 QNPDTIKAL 300
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 61.4 bits (148), Expect = 3e-10
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 47 EISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD--------------EMPVQ 92
+ D R+ AL + + + + +YP + SLH + + +P
Sbjct: 727 IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQP 786
Query: 93 ERCSFEKLQPDGAYLLD 109
+ + G YL+D
Sbjct: 787 INATSSLFERYGLYLID 803
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 60.7 bits (146), Expect = 4e-10
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGA 105
E++ DDR++ T MD+ + V+ YP L+ L S P R S E+L
Sbjct: 593 AEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDI 652
Query: 106 YLLD 109
YLL+
Sbjct: 653 YLLE 656
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 59.5 bits (143), Expect = 8e-10
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGA 105
PEIS D+R++ M + S ++ YP L+ +H +D S +P RCS +L +G
Sbjct: 597 PEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGI 656
Query: 106 YLLD 109
+LL
Sbjct: 657 FLLA 660
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 55.0 bits (131), Expect = 3e-08
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYLYPHLIR--PEISLDDRSFALYSATIMDIPS 67
+Y D +SF L + P YL S D+ +F + T D +
Sbjct: 562 KYADYNKDDPQSFRL-APNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTN 620
Query: 68 SVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYLLD 109
S++ + P L S + D P ++P+ LLD
Sbjct: 621 SLIMIQPTLTSFSMEDD-----PQPVLLDSISVKPNTILLLD 657
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 53.8 bits (128), Expect = 5e-08
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYLYPHLIR--PEISLDDRSFALYSATIMDIPS 67
++ D SF S T P + +L S D+ S+ + D+
Sbjct: 560 KFGEYHKDDPSSFRF-SETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQ 618
Query: 68 SVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYLLD 109
S++ + P L + P P + D L+D
Sbjct: 619 SLIMIQPILYAYSFSGP-----PEPVLLDSSSILADRILLMD 655
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 53.0 bits (126), Expect = 1e-07
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYL---YPHLIRPEISLDDRSFALYSATIMDIP 66
Y +S S + +++ P V+ L LDDR +A+ +
Sbjct: 535 AYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLV 594
Query: 67 SSVVYLYPHLISLHVIDPNS--------DEMPVQERCSFEKLQPDGAYLLD 109
+ ++P+L + + P ++ S EKL +GA+L+D
Sbjct: 595 HLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMD 645
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 47.7 bits (112), Expect = 5e-06
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 47 EISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD--------------EMPVQ 92
+ D R+ AL + + + + +YP + SLH + + +P
Sbjct: 611 IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQP 670
Query: 93 ERCSFEKLQPDGAYLLD 109
+ + G YL+D
Sbjct: 671 INATSSLFERYGLYLID 687
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 7e-06
Identities = 48/406 (11%), Positives = 107/406 (26%), Gaps = 125/406 (30%)
Query: 5 HFQIPQYRPE--ISLDD-------RSFALYSAT--------IMDIPSSVVYLYPHLIRPE 47
+ Y + L + +F L + D S+ + L
Sbjct: 237 LLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 48 ISLDDRS----FALY-SATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQP 102
++L Y D+P V+ P +S+ + E
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESIRDGLATW 344
Query: 103 DGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 162
D + L+ ++ + + LE + + S+ F +
Sbjct: 345 D--NWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSV---------------FP-PS 384
Query: 163 VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL---DGKKRKV----LYWE 215
I L++ W NKL SL K+ + +Y E
Sbjct: 385 A----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 216 ---DIDQPRAI--ALVPQDSIM-FWTDWGEVPKIERGA--------MNGDPRHRKVIVDS 261
++ A+ ++V +I + +P + ++ +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 262 TIFWPNGIAIDFNNRLLYWIDGRL---------------TFIEVMDYDGYV--------R 298
+F +DF +++ ++ T ++ Y Y+ R
Sbjct: 495 MVF------LDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 299 LVTSLGH--INLELYCNVFPKTC--ENFMKHCENGYYNGTKFHRSI 340
LV ++ +E T + + + H+ +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA--HKQV 587
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 40.5 bits (95), Expect = 6e-04
Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 45/243 (18%)
Query: 78 SLHVIDPNSDEM----PVQERCSFEKLQPDGAYLL-------DIRIANLSRP-------- 118
++ ID + E+ + +R E+++P L + I+ + +
Sbjct: 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171
Query: 119 --LKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 173
+K T I++ G A+D K+ T+ E+I+ T D + K +
Sbjct: 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGK 229
Query: 174 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF 233
+++D ++ + TDS+ ++ V +D + +L + A+ P + +
Sbjct: 230 EHFFINISLDTARQRAFITDSKAAEVLV--VDTRNGNILAKVAAPESLAVLFNPARNEAY 287
Query: 234 WTDWGE--VPKIERGAMNGDPRHRKVIVDSTI---FWPNGIAIDFNNRLLY---WIDGRL 285
T V I D + KV+ T PN +A+ + + LY
Sbjct: 288 VTHRQAGKVSVI-------DAKSYKVV--KTFDTPTHPNSLALSADGKTLYVSVKQKSTK 338
Query: 286 TFI 288
Sbjct: 339 QQE 341
Score = 39.4 bits (92), Expect = 0.002
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL-------YWEDI----DQPRAIAL 225
P G I+ T+ L++ ++ + + +D K +V QPR +
Sbjct: 91 PFGATINNTTQTLWFGNTVNSAVTA--IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148
Query: 226 VPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI--VDSTIFWPNGIAIDFNNRLLY 279
+ ++ + G+ I D + K+ + +T G+A+D + LY
Sbjct: 149 DDATNTVYISGIGKESVIWV----VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 38.8 bits (91), Expect = 0.002
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 171 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDS 230
GL PDG+A+D + +Y TD++ N++ + + VL + DI P IA+ +
Sbjct: 146 FTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT 204
Query: 231 IMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-----TIF------WPNGIAIDFNNRLLY 279
+ T+ ++ V + + T+ P +A+D + +
Sbjct: 205 VYV-TEHN--------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY- 248
Query: 280 WIDGRLTFIEVMDYDGY-VRLVTSLGH 305
V D V +TSL H
Sbjct: 249 ----------VADRGNDRVVKLTSLEH 265
Score = 35.3 bits (82), Expect = 0.024
Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 14/154 (9%)
Query: 146 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205
TD +++ N + +GL P+GLA+D +Y D N++ +
Sbjct: 83 TDFNNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG 137
Query: 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTI 263
K + VL + ++ P +A+ ++ TD V K+ + ++ V+ + I
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVDNSGNVYV-TDTDNNRVVKL-----EAESNNQVVLPFTDI 191
Query: 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297
P GIA+D +Y + + +
Sbjct: 192 TAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT 224
Score = 29.1 bits (66), Expect = 2.5
Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 171 TNGLITPDGLAIDWLTEKLYWTDSETNK-LEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ ++P G+A+D +Y T + + VL + + QP+ +A+
Sbjct: 20 IDFRLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG 78
Query: 230 SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
++ + TD+ + A + + V+ + +P G+A+D +
Sbjct: 79 TV-YVTDFNN-RVVTLAAGSNNQT---VLPFDGLNYPEGLAVDTQGAVY 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 39.1 bits (91), Expect = 0.002
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 26/136 (19%)
Query: 175 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALVPQDSIMF 233
K+Y +D +K + D K++KV D+P IAL P ++
Sbjct: 310 SGNTE-------NKIYVSDMCCSK--IEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLY 360
Query: 234 WTDWGEVPKIERGAMNGDPRHRKVIVD-------STI---FWPNGIAIDFNNRLLY---W 280
+ G E G + ++D P G+ + +NR L +
Sbjct: 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDF 420
Query: 281 IDGRLTFIEVMDYDGY 296
+D ++ V DG+
Sbjct: 421 LDHQIR---VYRRDGF 433
Score = 36.4 bits (84), Expect = 0.014
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 13/128 (10%)
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI-DQPRAIALVPQ 228
+ L D + + +Y ++ + ++S +D K + + D PR + L
Sbjct: 207 VDLTGKWSKILLYDPIRDLVYCSNWISE--DISVIDRKTKLEIRKTDKIGLPRGLLLSKD 264
Query: 229 DSIMFWTDWGEVPKIERGAMNG--DPRHRKVIVDSTI---FWPNGIAIDFNNRLLY---W 280
++ + + G G K+I TI I +Y
Sbjct: 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNTENKIYVSDM 322
Query: 281 IDGRLTFI 288
++
Sbjct: 323 CCSKIEVY 330
Score = 30.6 bits (69), Expect = 0.90
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 23/125 (18%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALV-----PQDS 230
P + +L E + LD + + + + V P+ +
Sbjct: 125 PKSVRFID-NTRLAIPLLEDE--GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181
Query: 231 IMFWTDWGE--VPKIERGAMNGDPRHRKVI--VDSTIFWPNGIAIDFNNRLLY---WIDG 283
++ + V D + VD T W + D L+Y WI
Sbjct: 182 ELWVSQMQANAVHVF-------DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISE 234
Query: 284 RLTFI 288
++ I
Sbjct: 235 DISVI 239
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 10/131 (7%)
Query: 173 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIM 232
L + +++T++ NK+ S G + + P I I
Sbjct: 60 PDAKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIW 118
Query: 233 FWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290
F T + K+ D + + + +P I + +N L++ + + I
Sbjct: 119 F-TQLNGDRIGKL-----TADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGR 171
Query: 291 MDYDGYVRLVT 301
+ G +
Sbjct: 172 ITNTGKLEEYP 182
Score = 37.3 bits (87), Expect = 0.005
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ P G+ L++ + NK+ + G+ + +P AI
Sbjct: 183 LPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS 241
Query: 230 SIMFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281
I F T+WG ++ +I D ++ + + P+GI + + W
Sbjct: 242 EIWF-TEWGANQIGRI-----TNDNTIQEYQLQTENAEPHGITFGKDGSV--WF 287
Score = 34.6 bits (80), Expect = 0.044
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 21/165 (12%)
Query: 146 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205
T + I T DG + N P + + L++T+++ N + +
Sbjct: 120 TQLNGDRIGKLTADGT---IYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNT 175
Query: 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW--GEVPKIERGAMNGDPRHRKVIVD--S 261
GK + + P I ++ ++ + ++ +I D +
Sbjct: 176 GKLEEYPLPTNAAAPVGITSGNDGAL-WFVEIMGNKIGRI-------TTTGEISEYDIPT 227
Query: 262 TIFWPNGIAIDFNNRLLY--WIDGRLTFIEVMDYDGYVRLVTSLG 304
P+ I N+ + + W + I + D ++
Sbjct: 228 PNARPHAITAGKNSEIWFTEWGANQ---IGRITNDNTIQEYQLQT 269
Score = 31.9 bits (73), Expect = 0.32
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
P G+ K+++T + NK+ G+ ++ + + + I ++T+
Sbjct: 22 PYGITSS-EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDI-WFTE 79
Query: 237 WGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281
G KI + ++ + + P GI N + W
Sbjct: 80 NGA-NKIGK--LSKKGGFTEYPLPQPDSGPYGITEGLNGDI--WF 119
Score = 27.3 bits (61), Expect = 9.6
Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
P + ++++T+ N++ + D ++ + +P I S+ ++
Sbjct: 232 PHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSV-WFAL 289
Query: 237 WGEVPKI 243
++ K+
Sbjct: 290 KCKIGKL 296
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 38.4 bits (89), Expect = 0.003
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 8/174 (4%)
Query: 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
++ T+ E + + S+ + ++ + +A ++ T W +
Sbjct: 45 IFVTNHEVGE--IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVA-TGWNADSIPVVSLV 101
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
D ++ + NGI + + D I ++D + L
Sbjct: 102 KSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHP-ML 159
Query: 309 ELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWG 362
+ N +K N Y + + D T E
Sbjct: 160 ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPV---DSTDKPGEPEIFVE 210
Score = 30.3 bits (68), Expect = 0.92
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 141 SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE-KLYWTDSETNKL 199
+ + ++ ++ D + + + D A D E LY N +
Sbjct: 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-NIDDFAFD--VEGNLYGATHIYNSV 235
Query: 200 EVSSLDGKKRKVL 212
+ D +
Sbjct: 236 VRIAPDRSTTIIA 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.008
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 62/230 (26%)
Query: 4 LHFQIPQYRPEISLDDRSFALYSATIMDIPS---SVVYLYPHLIRPEISLDDR------- 53
+ + P SL +PS S+ L ++ ++ +
Sbjct: 308 VRCY--EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 54 -SFALY-SATIMDI---PSSVVYLYPHLISLHVIDPNSDEMPVQERCSF--EKLQPDGAY 106
+L A + + P S+ L L D Q R F KL+ +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-PSGLD----QSRIPFSERKLKFSNRF 420
Query: 107 LLDIRIANLSRP-----LKPVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISC-CT 157
L + + P L P + I KDL + V + + ++ I T
Sbjct: 421 L---PV---ASPFHSHLLVPASDLINKDLVKNN----------VSF--NAKDIQIPVYDT 462
Query: 158 FDGNNVGSKHNVITNGLITPDGLAIDWLTEK-LYWTDSETNKLEVSS-LD 205
FDG+++ I+ + +D + + W T + + + LD
Sbjct: 463 FDGSDLRVLSGSISERI-------VDCIIRLPVKWE--TTTQFKATHILD 503
Score = 34.3 bits (78), Expect = 0.076
Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 56/165 (33%)
Query: 7 QIP--QYRPEISLDDRSFALYSATIMDIP--SSVVYLYP--HLIRPEISLDDRSFALYSA 60
+IP + + + S F ++ P S L P LI ++ ++ SF +A
Sbjct: 406 RIPFSERKLKFSN---RFLPVAS-----PFHSH--LLVPASDLINKDLVKNNVSF---NA 452
Query: 61 TIMDIPSSVVYLYPHLISLHVIDPNSD-------------EMPVQERCSFEKLQPDGA-Y 106
+ IP VY D SD + ++ +E A +
Sbjct: 453 KDIQIP---VY--------DTFD-GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 107 LLDI------RIANLSRPLKP---VTIIK--DLEEGAAIDYYYKK 140
+LD + L+ K V +I L+ DY +K+
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 31.9 bits (72), Expect = 0.46
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 23/82 (28%)
Query: 40 YPHLIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLH--VIDPNSDEMPVQERCSF 97
Y L+ I + + T ++ +++ + +P++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRT----TLDAEKVFTQGLNILEWLENPSN----------- 224
Query: 98 EKLQPDGAYLLDIRIANLSRPL 119
PD YLL I I S PL
Sbjct: 225 ---TPDKDYLLSIPI---SCPL 240
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 36.2 bits (84), Expect = 0.013
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 10/138 (7%)
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ N P + + L++T+++ N + + G + P I
Sbjct: 135 ELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND 193
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY--WIDGRLT 286
D++ ++ + KI R + + + + P+ I L + W +
Sbjct: 194 DAL-WFVEIIG-NKIGR--ITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-- 247
Query: 287 FIEVMDYDGYVRLVTSLG 304
I + + +
Sbjct: 248 -IGRLTSNNIIEEYPIQI 264
Score = 35.0 bits (81), Expect = 0.034
Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 10/127 (7%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
L I ++++T++ NK+ + G ++ P I P I ++T+
Sbjct: 59 VMCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDI-WFTE 116
Query: 237 WG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294
+ +I D + R+ + + +P+ I + +N L++ + + I +
Sbjct: 117 MNGNRIGRI-----TDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES 170
Query: 295 GYVRLVT 301
G +
Sbjct: 171 GDITEFK 177
Score = 34.2 bits (79), Expect = 0.061
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
P G+ + K++ T + N + +LDGK + + + + + ++T+
Sbjct: 17 PYGITVS-DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEV-WFTE 74
Query: 237 WGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279
KI R + ++ + + P GI N + +
Sbjct: 75 NAA-NKIGR--ITKKGIIKEYTLPNPDSAPYGITEGPNGDIWF 114
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
I P + L++T+ NK+ + + + +P I +
Sbjct: 220 IPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDG-E 277
Query: 230 SIMFWTDWGEVPKI 243
+I F + ++ K+
Sbjct: 278 TIWFAMECDKIGKL 291
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 36.3 bits (84), Expect = 0.013
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 20/123 (16%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALVPQDSIMFWT 235
P G I K+Y ++ +N + + +D V+ P+ +A+ P ++ T
Sbjct: 34 PMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91
Query: 236 DWGE--VPKIERGAMNGDPRHRKVIVDSTI---FWPNGIAIDFNNRLLY---WIDGRLTF 287
+ + I D V T+ P G+A+ + + LY D ++
Sbjct: 92 NMASSTLSVI-------DTTSNTVA--GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSV 142
Query: 288 IEV 290
I
Sbjct: 143 INT 145
Score = 34.0 bits (78), Expect = 0.085
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 176 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ-PRAIALVPQDSIMFW 234
+P GLA+ +KLY T++ VS ++ + V+ + + P+ IA+ P + ++
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDK--TVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYV 174
Query: 235 TDW--GEVPKIERGAMNGDPRHRKVIVDSTI---FWPNGIAIDFNNRLLY 279
++ + I D VI T+ P+GIA++ Y
Sbjct: 175 ANFDSMSISVI-------DTVTNSVI--DTVKVEAAPSGIAVNPEGTKAY 215
Score = 29.7 bits (67), Expect = 1.5
Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 42/240 (17%)
Query: 78 SLHVIDPNSDE----MPVQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTII--KDLEEG 131
+ +ID ++ +P + PDG + + N +++I
Sbjct: 55 DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVY---VTN--MASSTLSVIDTTSNTVA 109
Query: 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT-------PDGLAIDW 184
+ + + G ++ D V S N +T +I P G+A+
Sbjct: 110 GTVKTGKSPLGLALSPDGKKLYVTNNGD-KTV-SVINTVTKAVINTVSVGRSPKGIAVTP 167
Query: 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID-QPRAIALVPQDSIMFWTDWGE---- 239
K+Y + ++ + V +D V+ ++ P IA+ P+ + + T+ +
Sbjct: 168 DGTKVYVANFDSMSISV--IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT 225
Query: 240 VPKIERGAMNGDPRHRKVIVDSTI---FWPNGIAIDFNNRLLY---WIDGRLTFIEVMDY 293
V I D K+ + I P GIA+ + + +Y ++ I+
Sbjct: 226 VSMI-------DTGTNKIT--ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 36.2 bits (83), Expect = 0.015
Identities = 20/161 (12%), Positives = 47/161 (29%), Gaps = 17/161 (10%)
Query: 159 DGNNV-----GSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL----DGK 207
+ K V T +GL + + + T+ + N ++ +
Sbjct: 156 GEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215
Query: 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTDW--GEVPKIERGAMNGDPRHRKVIVDSTIFW 265
+ + P + +++ W G+V + + P + W
Sbjct: 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP----LFTIQDSGW 271
Query: 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHI 306
I + Y + +I DYD + +T+ +
Sbjct: 272 EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIV 312
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 33.5 bits (77), Expect = 0.088
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID---GRLTFIEVMDYD 294
P + + + PNG+A + + LY +E+ +
Sbjct: 175 PPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA 221
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 205 DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM-----NGDPRHRKVIV 259
DG + + D+D P +A P + ++ + E +G R+
Sbjct: 177 DGSPLQRM--ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234
Query: 260 DSTIFWPNGIAIDFNNRLLYWI 281
P+G +D L W
Sbjct: 235 SVPDGLPDGFCVDRGGWL--WS 254
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 33.1 bits (75), Expect = 0.12
Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 12/185 (6%)
Query: 117 RPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176
K V I I + + T I + + +
Sbjct: 72 NTFKEVGRITGFTSPRYIHFLSDEKAY-VTQIWDYRIFIINPKTYEITGYIECPDMDMES 130
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI-DQPRAIALVPQDSIMFWT 235
+ + +Y + +D + KV+ I QP ++ + + M+
Sbjct: 131 GSTEQMVQYGKYVYVNCWSYQN-RILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTI 188
Query: 236 DWGEVPKIERGAMNG-----DPRHRKV---IVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
G G D V WP+ + ++ LYWI+ +
Sbjct: 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWR 248
Query: 288 IEVMD 292
+ V
Sbjct: 249 MPVEA 253
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 33.0 bits (75), Expect = 0.15
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 1/129 (0%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236
G+A + + ++ + S+D K ++ A+ Q +
Sbjct: 133 MWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191
Query: 237 WGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296
+ A P + + +A+D LY++D F
Sbjct: 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251
Query: 297 VRLVTSLGH 305
V L+ L
Sbjct: 252 VTLIKQLEL 260
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 32.3 bits (74), Expect = 0.23
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294
P H + NG+ ++++ Y+ID ++ DYD
Sbjct: 136 FPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.58
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 93 ERCSFEKLQ-------PDGAYLLDIRIANL 115
E+ + +KLQ D A L I+ A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK-ATM 46
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 31.2 bits (70), Expect = 0.62
Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 16/122 (13%)
Query: 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED---IDQPRAIALVPQDSIMF 233
++ + +LY D + V S G ++ D A+ + + I++
Sbjct: 82 TYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVY 141
Query: 234 WTD-------WGEVPKIERGAMNG-----DPRHRKV-IVDSTIFWPNGIAIDFNNRLLYW 280
+TD G ++ G DP ++ ++ + P G + ++ +
Sbjct: 142 FTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLV 201
Query: 281 ID 282
+
Sbjct: 202 AE 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 30.9 bits (70), Expect = 0.67
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 251 DPRHRKVIVDSTIFWPNGIAI----DFNNRLLYWIDGRLTFIEVMDYDG 295
+ + VD+ +PNGIA+ D L + + D G
Sbjct: 159 TTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas
campestris}
Length = 243
Score = 30.2 bits (67), Expect = 0.94
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 22/122 (18%)
Query: 175 ITPDGLAIDWLTEKLYWTD--SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIM 232
+G A+ LY +D + KL+ +L + L + +
Sbjct: 103 YPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGEL 162
Query: 233 FWTDWGEVPKIERGAMNGDPRHRKVI---------------VDSTIFWPNGIAIDFNNRL 277
W +I R DP KV+ DST NGIA D +
Sbjct: 163 LANVWLT-SRIARI----DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217
Query: 278 LY 279
L+
Sbjct: 218 LF 219
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 30.5 bits (68), Expect = 1.0
Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 18/149 (12%)
Query: 215 EDIDQPRAIALVPQDSIMF----------WTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264
+ + I V + W + + + +V
Sbjct: 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFD 221
Query: 265 WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMK 324
+ NGI I + + +Y + I V + L T L ++ +N
Sbjct: 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVLSF-------DTLVDNISV 273
Query: 325 HCENGYYNGTKFHRSIRNFMIQGGDPTGT 353
G +R F +P G+
Sbjct: 274 DPVTGDLWVGCHPNGMRIFFYDAENPPGS 302
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 30.5 bits (69), Expect = 1.0
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 251 DPRHRKV-IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
P R V + I NGIA+ + ++L+ + + + +
Sbjct: 168 SPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294
K+ D +I PN I + Y++D ++ + + D
Sbjct: 172 TKLFADISI--PNSICFSPDGTTGYFVDTKVNRLMRVPLD 209
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 29.9 bits (66), Expect = 2.0
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 309 ELYCNVFP----KTCENFMKHCENGYYNGTKFHRSIRNFMIQ----GGDPT 351
+ N FP + +F+ Y + F ++R+F++Q GGDPT
Sbjct: 962 NMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEVGGDPT 1012
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 28.1 bits (62), Expect = 5.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL--------YWEDIDQPRAIALVPQDS 230
G + L E+ L+ +L G+ + +I Q +A+ +
Sbjct: 177 GAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236
Query: 231 I 231
I
Sbjct: 237 I 237
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 28.2 bits (63), Expect = 6.0
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 201 VSSLDGKKRKVLYWEDI---DQPRAIALVPQDS-IMFWTDWGEVPKIERGAMNGDPRHRK 256
GKK ++ W + L D I WT + P+I+ G +R
Sbjct: 389 AYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVD-PQIKGLLEKG---YR- 443
Query: 257 VIVDSTIFW 265
+I+ +
Sbjct: 444 LIMSNYDAL 452
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 27.5 bits (62), Expect = 6.6
Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 174 LITPDGLAIDWLTEKLYWTDSETNK-LEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIM 232
L+ P+ +A+ + + T+ +++ + G+ + + PR + + + I
Sbjct: 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRI- 134
Query: 233 FWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290
+ V ++ NG+ K + +PNG+ ++ ++ D R ++V
Sbjct: 135 IVVECKVMRVIIFDQ---NGN-VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKV 189
Query: 291 MDYDGYVRLVTSLG 304
+Y+G + + +G
Sbjct: 190 FNYEG--QYLRQIG 201
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 27.8 bits (62), Expect = 7.1
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDS-IMFWT-DWGEVPKIERGAMNGDPRHRKVIVD 260
L+ K K W D + + I +W+ D K E ++
Sbjct: 206 LEKKGLKTRMWNDGLIKNTFEQINPNIEITYWSYDGDTQDKNEAAERRDMRVSLPELLA 264
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 27.6 bits (62), Expect = 8.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 221 RAIALVPQDSIMF 233
I +VPQD+++F
Sbjct: 128 SHIGVVPQDTVLF 140
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Mus musculus}
Length = 358
Score = 27.3 bits (60), Expect = 9.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 350 PTGTGTGGESIWGKPFE-------DEFKPNYT 374
P G+ G+ +WG P + D PNY
Sbjct: 2 PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYD 33
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 27.4 bits (61), Expect = 9.4
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 316 PKTCENFMKHCENGYYNGTKFHRSIRNFMI 345
F+ + Y++ +H ++ +
Sbjct: 62 MMKLRRFLVMIQEDYHSQNPYHNAVHAADV 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.438
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,466,142
Number of extensions: 403632
Number of successful extensions: 1107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 163
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)