RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1363
(756 letters)
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 408 bits (1051), Expect = e-135
Identities = 177/516 (34%), Positives = 253/516 (49%), Gaps = 54/516 (10%)
Query: 168 NRTFLFIIKSALPYYVGNSTGSIQCNYRAFTWKYEQGSNKYGTMRTMIKSGPDGNRTGGL 227
L I + ++ C YR R
Sbjct: 24 GTLRLNIDAELAKPRLNRL-ENLNCEYREIK-------------RKRDSENHYS------ 63
Query: 228 AFTRYSRKVPLTSPVQI-LSDEFIRVDCSLDKVE-VYTDFFSFVPEPTP----VSDPQSR 281
+++ LT V++ + EF+ +C D + D F+F+ + P S P
Sbjct: 64 -YSKLFPLRLLTQSVEVKIGAEFLITECWEDFGKIYQKDVFNFLHDRIPPKKLSSTPADV 122
Query: 282 DPQSRVPQSDLPVPRPPDPPEPEYSVLVVGIDAVSRQNFLRQMSRTYKYLDTHYELVDMR 341
D SVL++GID++SR NF R M RTYK+L +++
Sbjct: 123 DK---------------------PSVLILGIDSLSRMNFRRSMPRTYKFL-KELGWFELQ 160
Query: 342 GYNKIGDNTFPNLVAALTGM-SEKELEQTCYPTPESTFDDCPFLWKNFSAAGFKTLYAED 400
GYNK+GDNTFPNL+ LTG SE ELE C P+ + D CPF+WK+F AG+ T +AED
Sbjct: 161 GYNKVGDNTFPNLLPLLTGKFSETELEADCDPSCNGSLDKCPFIWKDFKDAGYATAFAED 220
Query: 401 SFGMSTFNYFKSGFAKSPTDTFYNIFSKESEAVIGNTKILNAHLCMGSQLIFKTVLEYAL 460
G+ TFNY K GF K PTD + E + + + C+G + +L+Y
Sbjct: 221 WAGIGTFNYLKPGFRKQPTDHYLRPLLLAVEKHLTYSTRFGLNYCLGRRPTHNYLLDYLR 280
Query: 461 KYTSALRNYFYFAFVWTSSLTHDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTSDHG 520
++ R+ +F F W++SL+HD N D L ++K L++ G L TI+I SDHG
Sbjct: 281 QFLPRYRDSPFFGFFWSNSLSHDDFNYASALDEDLLNYLKKLHERGLLENTIVIFMSDHG 340
Query: 521 LRWGDFRETYQGHLEERLPFLFFIMPQTFKTKYRVAYSNLLYNQHRLTTPYDLHETFKDL 580
LR+G R T QG LEERLPF+ +P + KY A NL N +RLTTP+DLH T K +
Sbjct: 341 LRFGKLRRTSQGRLEERLPFMSISLPPWLREKYPQAVENLELNANRLTTPFDLHATLKHI 400
Query: 581 IDVSSLKDELLRQDRGPDKDNIPRGISLFRNIPDTRGCHQAGIPAHYCTCHNKLIRTSLE 640
+++ L D+ L Q R D PRGISLF IP R C AGIP H+CTC
Sbjct: 401 LNLGELSDKEL-QPRMKALDC-PRGISLFLPIPKNRTCSDAGIPEHWCTCEPD-KEVPTN 457
Query: 641 SPTVRELSQTLVSHINEVLLKNLTDKCHQLKVHKIL 676
+R +++++V INE LK + +C L+++K+
Sbjct: 458 DTLIRRIAESVVERINE-YLKTHSPQCAPLELNKVE 492
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 39.3 bits (92), Expect = 0.007
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 460 LKYTSALRNYFYFAF--VWTSSLTHDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTS 517
L S+ N + + Y N R DS + + ++ L +G L+ T++I+T+
Sbjct: 399 LSLNSSHANDDPSSNQAKARPPFKNRYQNALREVDSQIGRVLEQLRNSGLLDNTVVIITA 458
Query: 518 DHGLRWGDFRETYQGH 533
DHG + + + Y GH
Sbjct: 459 DHGEEFNEEEQNYWGH 474
>gnl|CDD|236879 PRK11195, PRK11195, lysophospholipid transporter LplT;
Provisional.
Length = 393
Score = 38.7 bits (91), Expect = 0.011
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 1 MFADFAIMFADLAILFADLAI---------MVADLAIFFADFAIMFADLAIMFADSRP 49
M A F AD A+LFA +A+ L +FF I+ A FADS P
Sbjct: 9 MAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFP 66
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 37.0 bits (86), Expect = 0.033
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 497 KFVKNLNKNGHLNRTILILTSDHGLRWGD---FRET--YQGHLEERLPFL 541
+F++ L + G L+ TI++ SDHG GD FR+ Y+G +PF+
Sbjct: 283 RFLQALKEFGLLDNTIILFVSDHGDMLGDHYLFRKGYPYEG--SAHIPFI 330
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 35.5 bits (82), Expect = 0.079
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 456 LEYALKYTSALRNYFYFAFVWTSSLTHDYLNLPRLGDSILQKFVKNLNKNGHLNRTILIL 515
Y +Y + + L + Y N D + + ++ L +NG L+ T+++
Sbjct: 176 PYYPDRYPEKYATFKPTSTCSEEQLLNSYDNSLLYTDDAIGRVLEKL-ENGLLDNTLVVY 234
Query: 516 TSDHG--------LRWGDFRETYQGHLEERLPFLFFIMPQTFKTKYRVAYSNLLYNQHRL 567
TSDHG L G +G R+P P + L
Sbjct: 235 TSDHGPSLGGGGYLHGGKTDNAPEGGY--RVPL-LIWSPGGKPKGQKN---------EAL 282
Query: 568 TTPYDLHETFKDLIDVSSLKDEL 590
+ DL T DL + + L
Sbjct: 283 VSHVDLFPTILDLAGILTEDLLL 305
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 33.5 bits (77), Expect = 0.33
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 492 DSILQKFVKNLNKNGHLNRTILILTSDHG 520
D + + ++ L++ G L T +I+ SDHG
Sbjct: 197 DRAIGRLLEALDERGLLENTNVIVVSDHG 225
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.1 bits (78), Expect = 0.36
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 269 VPEP-TPVSDPQSRDPQSRVPQSDLPVPRPPDPPEP 303
+P P P R + V +S PPD PE
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER 2907
Score = 33.4 bits (76), Expect = 0.55
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
P P + P + PQ + P P P PP PP P+
Sbjct: 2907 RPPQPQAPPPPQ-PQPQPPPPPQPQPPPPPPPRPQ 2940
Score = 32.2 bits (73), Expect = 1.4
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEP 303
+ S D R PQ P P P P P
Sbjct: 2891 VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Score = 30.7 bits (69), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 270 PEPTPV-SDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
E + D R PQ + P P P+PP PP+P+
Sbjct: 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
Score = 30.7 bits (69), Expect = 3.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEP 303
P P PQ + P PQ P P P PP P
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 32.3 bits (74), Expect = 0.77
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
P+P PV P+ P+ + P P+P P E
Sbjct: 107 PKPKPVEKPK-PKPKPQQKVEAPPAPKPEPKPVVE 140
>gnl|CDD|223913 COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit
1 [Energy production and conversion].
Length = 566
Score = 32.3 bits (74), Expect = 0.99
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 22/106 (20%)
Query: 1 MFADFAIMFADLAILFADLAIMVADLAIFFADFAIMFADLAIMFADSRPESIFWIFGKPI 60
+ ++ +L A L +++ D + F +++ + +FW FG P
Sbjct: 192 ILITAILILLAFPVLAAALTMLLLDRNFGTSFFTPAGGGDPLLY-----QHLFWFFGHPE 246
Query: 61 PRLFML------------HDRRPKWFY-----LISLFTVFSTGVYL 89
+ +L R+P + Y + S V+
Sbjct: 247 VYILILPAFGIVSEIIPTFARKPLFGYTSMVYAFVAIGILSFIVWA 292
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 31.9 bits (72), Expect = 1.3
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 269 VPEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPEYSVLVVGIDAVSR----QNFLRQM 324
V P Q + + Q P PP+ E SR Q FL+ +
Sbjct: 218 VQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQG------HKRSREQGNQEFLKML 271
Query: 325 SRTYKYLDT 333
Y Y DT
Sbjct: 272 KEDYGYPDT 280
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 29.9 bits (68), Expect = 1.4
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 22 MVADLAIFFADFAIMFADLAIMFADSRPESIFWIFG--KPIPRLFM----LHDR-RPKWF 74
++ ++ I + S + + IP L + LHD R W+
Sbjct: 18 VLFNILITLVLLILAALLSGSSSLLSGGGLLLGLISLAIFIPSLAVTVRRLHDTGRSGWW 77
Query: 75 YLISLFTVFSTGVYLYYYPNPTSVDNN 101
L+ L + V L P + N
Sbjct: 78 LLLLLIPLIGFIVLLVLLLLPGTPGPN 104
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 31.3 bits (71), Expect = 1.7
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 263 TDFFSFVPEPTPVSDP-QSRDPQSRVPQSDLPVPRPPDPPEPEYSVLVVGIDAVSRQNFL 321
+D S S P + P ++P P PP PP P S+ + S + +
Sbjct: 153 SDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPPSLQ----QSTSAIDLI 208
Query: 322 RQMSR 326
++
Sbjct: 209 KERKG 213
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 31.5 bits (72), Expect = 1.7
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 6 AIMFADLAILFADLAIMVADLAIFFADFAIMFADLAIMF---------ADSRPESIFWIF 56
AI+ A + ADL M+ D + A +M IMF D I I
Sbjct: 28 AILAALIGGFGADLGPMMEDGISWIAPTFLMLL-FGIMFGGIMEDTGLFDPLAVKILRIS 86
Query: 57 GKPIPRLFML 66
+L +
Sbjct: 87 KGDPWKLIVG 96
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 31.3 bits (70), Expect = 2.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 269 VPEPTPVSDPQSRDPQSRV-PQSDLPVPRPPDPPEPE 304
+P+P + DP DP V P +P P PDP +PE
Sbjct: 573 IPDPV-IPDPVDPDPVDPVIPDPVIPDPVDPDPVDPE 608
>gnl|CDD|222873 PHA02556, 15, tail sheath stabilizer and completion protein;
Provisional.
Length = 273
Score = 30.8 bits (70), Expect = 2.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 261 VYTDFFSFVPEPTPVSDPQSRDPQS---------------RVPQSDLPVPRPPDPPEPE 304
+Y DFF+ E P + +S D + + D+P+P P+PP P
Sbjct: 212 IYLDFFANSRELAPEGNFESVDHEVVPRAVEKEDWDGESVQTYSDDIPIPTGPEPPGPR 270
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 30.6 bits (69), Expect = 2.8
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEP 303
P P P + + P P P P+P
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQP 74
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.8 bits (70), Expect = 2.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 269 VPEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPE 302
P P+++ P P+ P P+P P
Sbjct: 100 QPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
>gnl|CDD|224190 COG1271, CydA, Cytochrome bd-type quinol oxidase, subunit 1 [Energy
production and conversion].
Length = 457
Score = 30.7 bits (70), Expect = 3.6
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 20/79 (25%)
Query: 7 IMFADLAILFADLAIMVADLAIFFADFAIMFADLAIMFADSRPESIF---WIFGKPIPRL 63
+M + + V D +F A AI A A E+ F ++FG
Sbjct: 72 VMEFQFGTNWPGFSEYVGD--VFGAPLAIE-ALFAFFL-----EATFLGIFLFGW----- 118
Query: 64 FMLHDRRPKWFYLISLFTV 82
DR K +L+S + V
Sbjct: 119 ----DRVSKKLHLLSTWLV 133
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.5 bits (69), Expect = 3.6
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 239 TSPVQILSDEFIRVDCSLDKVEVYTDFFSFVPEPTPVSDPQSRDPQSRVPQSDLPVPRPP 298
T+ L E ++ L V P+PV + P +R P++ PP
Sbjct: 343 TTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRP--TPAPSTR-PKAAAAANIPP 399
Query: 299 DPPEPE 304
P E
Sbjct: 400 KEPVRE 405
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 29.5 bits (67), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 512 ILILTSDH----GLRWGDFRETYQGHLEERLPFLFFI 544
+L+ +S+ R+GD Q H EERL F+
Sbjct: 153 VLLASSEACPNQAFRYGDRALGLQFHPEERL-LRNFL 188
>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional.
Length = 1232
Score = 30.7 bits (69), Expect = 4.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 415 AKSPTDTFYNIFSKESEAVIGNTKILN--AHLCMGSQ-----LIFK------TVLEYALK 461
A ++F + + AV+ + LN A + M Q L++K +VLEY L
Sbjct: 998 ADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLA 1057
Query: 462 YTSALRNYFY 471
+TSA+ +
Sbjct: 1058 FTSAVLDRHR 1067
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 30.0 bits (68), Expect = 4.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
P + Q + P Q PV + + P+ E
Sbjct: 142 PPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVE 176
>gnl|CDD|152747 pfam12312, NeA_P2, Nepovirus subgroup A polyprotein. This family
of proteins is found in viruses. Proteins in this family
are typically between 259 and 1110 amino acids in
length. The family is found in association with
pfam03688, pfam03689, pfam03391. This family is one of
the polyproteins expressed by Nepoviruses in subgroup A.
Length = 175
Score = 29.5 bits (66), Expect = 4.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 287 VPQSDLPVPRPPDPPEPEYSVLVVGIDAVSRQNFLR 322
VPQ +P PP P P + VG A +R F+R
Sbjct: 16 VPQPKKVIPSPPPVPTPYFR--PVGAFAPTRSGFIR 49
>gnl|CDD|150033 pfam09215, Phage-Gp8, Bacteriophage T4, Gp8. Members of this
family of viral baseplate structural proteins adopt a
structure consisting of a three-layer beta-sandwich with
two finger-like loops containing an alpha-helix at the
opposite sides of the sandwich. The two peripheral,
five-stranded, antiparallel beta-sheets are stacked
against the middle, four-stranded, antiparallel
beta-sheet. Attachment of this family of proteins to the
baseplate during assembly creates a binding site for
subsequent attachment of Gp6.
Length = 324
Score = 29.8 bits (67), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 88 YLYYYPNPTSVDNNSSYHPLVTQADDIRAEPTRAGY 123
YLY P ++ ++ + +V +++ A+PTR GY
Sbjct: 180 YLYTIPPDVVLNFCTNEYIVVPFPEELAADPTRWGY 215
>gnl|CDD|235709 PRK06132, PRK06132, hypothetical protein; Provisional.
Length = 359
Score = 29.6 bits (67), Expect = 5.4
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 268 FVPEPTPVSDPQSRDPQSRVPQSDLPVPR-----PPDPPEPEYSVLVVGID--AVSRQNF 320
P+ P P S + P + P P D P S+LV D R+NF
Sbjct: 185 LAPKAAPAPAPASDAAANGRPAAPAPAPAEAAWADADAPTGPISILVSRADQRLYVRRNF 244
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 30.0 bits (68), Expect = 5.9
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 409 YFKSGFAKSPTDTFY-NIFSKESEAVIGNTKILNAHLCMGSQLIFKTVLEYALK-YTSAL 466
F FA +P T+ N+ K E + + L SQ Y L+ YT A
Sbjct: 605 LFGGEFADAPFSTYVDNVSFKGCEEFTSSERSFGGLLSYASQ-----TDTYTLEGYTFA- 658
Query: 467 RNYFYFAFVWTSSLTHDY-LNLPRLGDSILQK---FVKNLNKN 505
+ A + + L LPRL +++ F+ LN N
Sbjct: 659 -PVPFGAEDLQRTASLLLSLKLPRL---VVRDQMGFISVLNNN 697
>gnl|CDD|184988 PRK15028, PRK15028, cytochrome bd-II oxidase subunit 2;
Provisional.
Length = 378
Score = 29.5 bits (66), Expect = 7.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 59 PIPRLFMLHDRRPKWFYLISLFT----VFSTGVYLYYYPNPTSVDNNSS 103
P+ + ++ RP W +L++ +F+ G+ L+ + P+SV SS
Sbjct: 275 PLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISS 323
>gnl|CDD|225490 COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid
transport and metabolism].
Length = 498
Score = 29.7 bits (67), Expect = 7.4
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 458 YALKYTSALRNYFYFAFVWTSSLTHDYL-----NLPRLGDSILQKFVKNLNKNGHLNRTI 512
+ T A+ ++ F W + L N+ L + + F+ NL N L+ +
Sbjct: 367 ISGCTTDAMTDFLTFTGGWAKPSRYLVLNLLVNNVWILLYAGDKDFICNLRGNMALDPKL 426
Query: 513 LIL 515
L
Sbjct: 427 KWL 429
>gnl|CDD|235430 PRK05362, PRK05362, phosphopentomutase; Provisional.
Length = 394
Score = 29.3 bits (67), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 512 ILILTSDHGLRWGDFRETYQG--HLEERLPFLFF 543
+LI+T+DHG D T+ G H E +P L +
Sbjct: 324 LLIITADHG---ND--PTWPGTDHTREYVPLLVY 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,197,755
Number of extensions: 3891902
Number of successful extensions: 3711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3684
Number of HSP's successfully gapped: 45
Length of query: 756
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 652
Effective length of database: 6,324,786
Effective search space: 4123760472
Effective search space used: 4123760472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)