RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1363
(756 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 2e-11
Identities = 90/564 (15%), Positives = 158/564 (28%), Gaps = 221/564 (39%)
Query: 231 RYSRKVP--LTSPVQILSDEFIRV-----------DCSLDKVEVYTDFFSFV---PEPTP 274
+ VP L ++F ++ D E+ F +V EP+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 275 VSDP----------------QSRDPQSRV----PQSDLPVP-----------------RP 297
V + D + ++D + RP
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 298 PDPPEPEYSVLVVGIDAVSRQNFLRQMSRTY----------KYLDTHYELVDMRGYNKIG 347
D S L AV N ++ Y + EL D+ Y
Sbjct: 137 FDKKSN--SAL---FRAVGEGN-----AQLVAIFGGQGNTDDYFE---ELRDL--YQ--- 178
Query: 348 DNTFPNLVAALTGMSEKELEQTCYPTPEST------FD------------DCPFLWKNFS 389
T+ LV L S + L + T ++ + D +L
Sbjct: 179 --TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL----- 231
Query: 390 AAGFKTLYAEDSF---GMSTF-NYF----KSGFAKSPTDTFYNIFSKESEAVIGNTK-IL 440
L S G+ +Y GF +P + + G+++ ++
Sbjct: 232 ------LSIPISCPLIGVIQLAHYVVTAKLLGF--TPGE-----LRSYLKGATGHSQGLV 278
Query: 441 NAHLCMGSQLIFKTVLEYALKYTSALRNYFYF------AFVWTS---SLTHDY------- 484
A + + + + A+ F+ A+ TS S+ D
Sbjct: 279 TAVAIAET----DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 485 ----LNLPRLGDSILQKFVKNLNKNGHLNRTI----------LILT----SDHGLRWGDF 526
L++ L +Q +V N + + + L+++ S +GL
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTL 393
Query: 527 RETY--QGHLEERLPF----LFFIM---PQT--FKTKY----------RVAYSNLLYNQH 565
R+ G + R+PF L F P F + + +N+ +N
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 566 RLTTP-YDLHETF--KDLIDVS-----SLKDELLRQ----------------DRGPDKDN 601
+ P YD TF DL +S + D ++R D GP +
Sbjct: 454 DIQIPVYD---TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 602 IPRGIS-LFRNIPDTRGCH--QAG 622
G+ L D G AG
Sbjct: 511 ---GLGVLTHRNKDGTGVRVIVAG 531
Score = 45.0 bits (106), Expect = 9e-05
Identities = 45/312 (14%), Positives = 89/312 (28%), Gaps = 124/312 (39%)
Query: 446 MGSQL-----IFKTVLEYALKYT------SAL---RN-----YFYFAFVWTSSLTHDYLN 486
MG L + V A + S L N +F + +Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 487 L----PRLGDSILQKFVKNLNK----------NGHLNRTI-----LILTS--------DH 519
+ G +K K +N+ G L+ T L L
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 520 GLRWGDFRETYQGH-LEERLPFLFFIMPQTFKTKYR--VAYSNLLYNQHRLTTPYDLHET 576
GL D T+ GH L E Y + ++++ +
Sbjct: 1751 GLIPADA--TFAGHSLGE----------------YAALASLADVM--------------S 1778
Query: 577 FKDLIDVSSLKDELLRQDRGPDKDNIPRGISLFRNIP-DTRGCHQAGIPAHYCTCHNKLI 635
+ L+ E++ RG+++ +P D G G+ A + +
Sbjct: 1779 IESLV-------EVVFY----------RGMTMQVAVPRDELGRSNYGMIA----INPGRV 1817
Query: 636 RTSLESPTVRELSQTLVSHINEVL--------------------LKNLTDKCHQLKVHKI 675
S ++ + + + ++ L +T+ + +K+ KI
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 676 LSAQYEQSIFSM 687
+ ++S S+
Sbjct: 1878 DIIELQKS-LSL 1888
Score = 43.9 bits (103), Expect = 2e-04
Identities = 85/454 (18%), Positives = 140/454 (30%), Gaps = 177/454 (38%)
Query: 9 FADLAILFADLAIMVADLAIFFADFAIMFADLAIMFADSRPESIFWIFGKPIPRLFMLH- 67
F +L L+ ++V DL I F+ A ++L D+ +F + + L L
Sbjct: 170 FEELRDLYQTYHVLVGDL-IKFS--AETLSELIRTTLDAEK-----VFTQGLNILEWLEN 221
Query: 68 -DRRPKWFYLISLFTVFSTGVYLYYYPNPTSVDNNSSYHPL--VTQADDIRAEPTRAGYF 124
P YL+S+ P S PL V Q A Y
Sbjct: 222 PSNTPDKDYLLSI---------------PISC-------PLIGVIQL---------AHYV 250
Query: 125 VYSNACKISELPVRNERLEHYFEPESFESCRGWNDGKPRLV--------GSNRTFLFIIK 176
V K+ R + G + G LV S +F ++
Sbjct: 251 V---TAKLLGFTPGELR-------SYLKGATGHSQG---LVTAVAIAETDSWESFFVSVR 297
Query: 177 SALPY--YVGNSTGSIQCNYRAFTWKYEQGSNKYGTMRTMIKSGPDGNRTGGLAFTRYSR 234
A+ ++G ++C Y A+ N + S +
Sbjct: 298 KAITVLFFIG-----VRC-YEAY-------PNTSLPPSILEDSLENNE------------ 332
Query: 235 KVPLTSPVQILSDEFIRVDCSLDKVEVYTDFF-SFVPEPTPVS--------------DPQ 279
VP SP +LS I + + ++V+ Y + S +P V PQ
Sbjct: 333 GVP--SP--MLS---IS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 280 S-----------RDP----QSRVPQSD---------LPVPRPPDPPEPEYSVLVVG-IDA 314
S + P QSR+P S+ LPV P +S L+V D
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV------ASPFHSHLLVPASDL 438
Query: 315 VSRQNFLRQMSRTYKYL-----DTHYELVDMRGYNKIGDNTFPNLVAALTGMSEKELEQT 369
+++ +S K + DT + D+R + + +V + +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRVLS---GSISERIVDCIIRL-------- 486
Query: 370 CYPTPESTFDDCPFLWKNFSAAGFKTLYAEDSFG 403
P W+ + FK + D FG
Sbjct: 487 ------------PVKWE--TTTQFKATHILD-FG 505
Score = 39.6 bits (92), Expect = 0.004
Identities = 39/248 (15%), Positives = 80/248 (32%), Gaps = 58/248 (23%)
Query: 505 NGHLNRTILILTSDHGL---RWGDFR-------ETYQGHLEERLP------FLFFIMPQT 548
+G L +L+ T+ + F E + E P FL ++
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 549 FKTKYRVAYSNLLYNQHRLTTPYDLHETFKDLIDVSSLKDELLRQDRGPDKDNIPRGISL 608
+K + +L LT + + + D+ +L +LL+++ + + L
Sbjct: 73 EPSK-VGQFDQVL--NLCLT---EFENCYLEGNDIHALAAKLLQENDTT----LVKTKEL 122
Query: 609 FRNIPDTRGCHQAGIPAHYCTCHN-KLIRTSLESPTVR----------------ELSQTL 651
+N A P + N L R ++ + EL + L
Sbjct: 123 IKNY--ITARIMAKRP--FDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEEL-RDL 176
Query: 652 VSHINEVLLKNLTDKCHQLKVHKILSAQYEQSIFSMSSKTGNWTQR-------DYTISI- 703
VL+ +L + I + + +F+ W + DY +SI
Sbjct: 177 -YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 704 VTVPGLAI 711
++ P + +
Sbjct: 236 ISCPLIGV 243
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 8e-06
Identities = 35/296 (11%), Positives = 80/296 (27%), Gaps = 69/296 (23%)
Query: 477 TSSLTHDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETY-QGHLE 535
T + Y ++ L FV N + + IL+ + +
Sbjct: 11 TGEHQYQYKDI--LSV-FEDAFVDNFDCKDVQDMPKSILSKE------EIDHIIMSKDAV 61
Query: 536 ERLPFLFFIMPQTFKTKYRVAYSNLL---YN------QHRLTTPYDLHETFKDLIDVSSL 586
LF+ + + + +L Y + P + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQ 115
Query: 587 KDELLRQDRGPDKDNIPRGISLFRNIPDTRGCHQAGIPAHYCTCH-----NKLIRTSLES 641
+D L ++ K N+ R + + + R PA K T +
Sbjct: 116 RDRLYNDNQVFAKYNVSR-LQPYLKL---RQALLELRPAKNVLIDGVLGSGK---TWVAL 168
Query: 642 PTVRELSQTL----------VSHIN--EVLLKNLTDKCHQLKVHKILSAQYEQSIFSMSS 689
+ + N E +L+ L +Q+ +++ + S ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHS-SNIKL 225
Query: 690 KTGNWTQRDYTISIVTVPGLAIFESTMRYD---LILDTKDIVGDVSRLNVYANQSR 742
+ + L + Y+ L+L + V + N + +
Sbjct: 226 RIHSIQAE-----------LRRLLKSKPYENCLLVLL--N-VQNAKAWNAFNLSCK 267
Score = 46.8 bits (110), Expect = 2e-05
Identities = 69/563 (12%), Positives = 150/563 (26%), Gaps = 190/563 (33%)
Query: 136 PVRNERLEHYFEPESFESCRG--WNDG---------KPRLVGSNRTFLFIIKSALPYYV- 183
P++ E+ + + R +ND + + R L ++ A +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLI 155
Query: 184 ------GNST--------GSIQC--NYRAFTW-----------KYEQGSNKYGTMRTMIK 216
G + +QC +++ F W E +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 217 SGPDGNRTGGL-------AFTRYSRKVPLTSPVQILSD----EFIR---VDCSLDKVEVY 262
S D + L R + P + + +L + + + C K+ +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLT 271
Query: 263 T------DF--------FSFVPEPTPVSDPQSRDPQSRV---PQSDLPVPRPPDPPE--- 302
T DF S ++ + + + DLP E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-------REVLT 324
Query: 303 --PEYSVLVVGIDAVSRQNFLRQMSRTYKYLDTHYELVDMRGYNKIGDNTFPNLVAALTG 360
P + I A S +R T+ ++ V+ I +++ L
Sbjct: 325 TNP----RRLSIIAES----IRDGLATWDN----WKHVNCDKLTTIIESSLNVL------ 366
Query: 361 MSEKELEQTCY----------PTPESTFDDCPFLWKNFSAAGFKTLYAEDSFGMSTFNYF 410
E + + P +W + ++ ++ +
Sbjct: 367 --EPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVI-------KSDVMVVVNKL-HK 413
Query: 411 KSGFAKSPTDTFYNIFSKESEAVIGNTKILNAHLCMGSQLIFKTVLE-YALKYT------ 463
S K P ++ +I S E + H +++++ Y + T
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNIPKTFDSDDL 464
Query: 464 --SALRNYFYFAFVW----------TSSLTHDYLNLPRLGDSILQKFVKN-LNKNGHLNR 510
L YFY + +L+ +F++ + +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---------RFLEQKIRHDSTAWN 515
Query: 511 TILILTSDHGLRWGDFRETYQGHLEERLP-----------FLFFIMPQTFKTKYRVAYSN 559
+ + + Y+ ++ + P FL I +K Y++
Sbjct: 516 ASGSILNT----LQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENLICSK----YTD 566
Query: 560 LLYNQHRLTTPYD--LHETFKDL 580
LL + L + E K +
Sbjct: 567 LL--RIALMAEDEAIFEEAHKQV 587
Score = 41.8 bits (97), Expect = 9e-04
Identities = 69/450 (15%), Positives = 134/450 (29%), Gaps = 151/450 (33%)
Query: 379 DDCPFLWKNFSAAGFKTLYAEDSFGMSTFNYFKSGFAKSPTDTFYN---IFSKESEAVIG 435
+ FL + KT + S + + D YN +F+K + + +
Sbjct: 89 INYKFLM-----SPIKTEQRQPSMMTRMYIEQR--------DRLYNDNQVFAKYNVSRLQ 135
Query: 436 NTKILNAHLC------------M-GSQLIFKTVLEYALKYTSALRNY-----FYFAFVWT 477
L L + GS KT + AL +Y F W
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSG---KTWV--AL---DVCLSYKVQCKMDFKIFWL 187
Query: 478 S-------------------SLTHDYLNLPRLGDSI------LQKFVKNLNKNGHLNRTI 512
+ + ++ + +I +Q ++ L K+ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 513 LILTSDHGLRWGDFRETYQGHLEERLPFLFFIMPQT-FKTKYR--------VAYSNLLYN 563
L+L + + + F + + T+++ +++ +
Sbjct: 248 LVL--LN--VQ-NAK-----AWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 564 QHRLT-TPYDLHETFKDLIDVSSLKDELLRQDRGPDKDNIPRGISLF----RNIPDTRGC 618
H +T TP ++ +D +L R+ PR +S+ R+ T
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR--PQDLPRE----VLTTNPRRLSIIAESIRDGLATWDN 346
Query: 619 HQAGIPAHY-CTCHNKLIRTS---LESPTVRELSQTLV-----SHINEVLLK----NLTD 665
+ H C +I +S LE R++ L +HI +LL ++
Sbjct: 347 WK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 666 KCHQLKVHKILSAQYEQSIFSMSSKTGNWTQRDYTISIVTVPGLAIFESTMRYDLILDTK 725
+ V+K+ +S+ K + TISI + L+ K
Sbjct: 402 SDVMVVVNKLHK-------YSLVEKQPK----ESTISI--------------PSIYLELK 436
Query: 726 DIVGDVSRLNVYANQSRCVDQARLKLYCYC 755
V N YA VD + +
Sbjct: 437 -----VKLENEYALHRSIVDHYNIPK-TFD 460
Score = 41.0 bits (95), Expect = 0.002
Identities = 85/587 (14%), Positives = 152/587 (25%), Gaps = 178/587 (30%)
Query: 131 KISELPVRNERLEHYFEP---ESFESCRGWNDGKPRLVGSNRTFLFIIKSALPYYVGNST 187
+ E + + + FE ++F+ C+ D P+ + S II S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFD-CKDVQD-MPKSILSKEEIDHIIMSKDA------- 60
Query: 188 GSIQCNYRAFTWKYEQGSNKYGTMRTMIKSGPDGNRTGGLAFTRYSRKVPLTSPVQILSD 247
+ R F + + ++ N Y L SP
Sbjct: 61 --VSGTLRLFWTLLSKQEEMV---QKFVEEVLRIN---------YKF---LMSP------ 97
Query: 248 EFIRVDCSLDKVEVYTDFFSFVPEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPEYSV 307
I+ + + + D D Q + V R Y
Sbjct: 98 --IKTEQR-QPSMMTRMYIEQR-------DRLYNDNQ---VFAKYNVSRLQ-----PYLK 139
Query: 308 LVVGIDAVSRQNFLRQMSRTYKYLDTHYELVDMRGYNKIGDNTFPNLVAALTGMSEKELE 367
L + L ++ R K + + G K VA +S K
Sbjct: 140 L---------RQALLEL-RPAKNVLID----GVLGSGK-------TWVALDVCLSYK--- 175
Query: 368 QTCYPTPESTFDDCPFLWKNFSAAGFKTLYAEDSFGM-STFNYFKSGFAKSPTDTFYNIF 426
+ D F W N E M Y S +D NI
Sbjct: 176 ------VQCKMDFKIF-WLNLK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 427 SKESEAVIGNTKILNAHLCMGSQLI------------F----KTVLEYALKYTSALRNYF 470
+ ++L + L+ F K +L T+ R
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL------TT--RFKQ 276
Query: 471 YFAFVWTSSLTHDYLNLPRLG---DSILQKFVKNLN----------KNGHLNRTILI--L 515
F+ ++ TH L+ + D + +K L+ + R +I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 516 TSDHGLRWGDFRETYQGHLEERLPFLFFIMPQTFKTKYRVAYSNLLYNQHRLTTPYDLHE 575
D W + ++ ++L T + + L P + +
Sbjct: 337 IRDGLATW----DNWKHVNCDKL-----------TTIIESSLNVL--------EPAEYRK 373
Query: 576 TFKDLIDVSSLKDELLRQDRGPDKDNIPRG-ISLFRNIPDTRGCHQAGIPAHYCTCHNKL 634
F L + P +IP +SL NKL
Sbjct: 374 MFDRL--------SVF-----PPSAHIPTILLSLIWFDVIKSDVMVV---------VNKL 411
Query: 635 IRTSLESPTVRELSQTLVSHINEVLLKNLTDKCHQLKVHKILSAQYE 681
+ SL V + + I + L+ ++ +H+ + Y
Sbjct: 412 HKYSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Score = 32.1 bits (72), Expect = 0.86
Identities = 33/279 (11%), Positives = 71/279 (25%), Gaps = 94/279 (33%)
Query: 25 DLAIFFADFAIMFADLAIMFADSRPESIFWIFGKPIPRLFM--LHDRRPKWFYLISLFTV 82
L++F I L++++ D + + LH SL
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKS---------DVMVVVNKLHKY--------SL--- 416
Query: 83 FSTGVYLYYYPNPTSVDNNSSYHPLVTQADDIRAEPTRAGYFVYSNACKISELPVRNERL 142
+ P +++ S + Y K+ + +
Sbjct: 417 ------VEKQPKESTI----SIPSI---------------YLELK--VKLENEYALHRSI 449
Query: 143 -EHYFEPESFESCRGWNDGKPRLVGSNRTFLFI---IKSALPYYVGNSTGSIQCNYRAFT 198
+HY P++F+S + P L + I +K+ + ++R F
Sbjct: 450 VDHYNIPKTFDS---DDLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FL 503
Query: 199 WKYEQGSNKYGTMRTMIKSGPDGNRTGGLA-----FTRYSRKVPLTSPVQILSDEFIRVD 253
K + N +G + Y +I +
Sbjct: 504 ------EQK------IRHDSTAWNASGSILNTLQQLKFYKP--------------YICDN 537
Query: 254 CSLDKVEVYTDFFSFVPEPTPVSDPQSRDPQSRVPQSDL 292
+ V F+P+ + + + L
Sbjct: 538 DPKYERLVN-AILDFLPKIEENL---ICSKYTDLLRIAL 572
Score = 31.7 bits (71), Expect = 1.2
Identities = 70/498 (14%), Positives = 128/498 (25%), Gaps = 148/498 (29%)
Query: 40 LAIMFADS------RPESIFWI-FGK---PIPRLFMLHDRRPKWFYLISLFTVFSTGVYL 89
+A+ S IFW+ P L ML L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--------------------L 205
Query: 90 YYYPNPTSVDNNSSYHPLVTQADDIRAEPTRAGYFV---YSNACKISEL-PVRNERLEHY 145
Y +P + + + I+AE R Y N + L V+N + +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLV--LLNVQNAKAWNA 261
Query: 146 FEPESFESCR---------------GWNDGKPRLVGSNRTF-------LF-----IIKSA 178
F SC+ L + T L
Sbjct: 262 FNL----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 179 LPYYV--GN--STGSIQCNYRAF--TWKYEQGSNKYGTMRTMIKSGPDGNRTGGLAFTRY 232
LP V N I + R TW + N + T+I+S
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-CDKLTTIIESS-------------- 362
Query: 233 SRKVPLTSPVQILSDEFIRVDCSLDKVEVYTDFFSF---VPEPTPV-----SDPQSRDPQ 284
+ +L R +++ F PT + D D
Sbjct: 363 ---------LNVLEPAEYR--------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 285 SRVPQ---SDLPVPRPPDPPEPEYSVLVVGIDAVSRQNFLRQMSRTYKYLDTHYELVDMR 341
V + L V + P E S+ + ++ + + R +D HY +
Sbjct: 406 VVVNKLHKYSL-VEK--QPKESTISIPSIYLELKVKLENEYALHR--SIVD-HYNIPKTF 459
Query: 342 GYNKIGDNTFPNLVAALTG--MSEKELEQTCYPTPESTFDDCPFLW-----KNFSAAGFK 394
+ + + G + E + D F + ++ S A
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNA 516
Query: 395 TLYAEDSFGMSTFNYFKSGFAKS-PTDT--FYNI--FSKESEAVIGNTKILNAHLCMGSQ 449
+ ++ ++K + P I F + E + +K + + +
Sbjct: 517 SGSILNTL--QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK----YTDL-LR 569
Query: 450 LIFKTVLEYALKYTSALR 467
+ E + A +
Sbjct: 570 IALMA--EDEAIFEEAHK 585
Score = 29.4 bits (65), Expect = 5.3
Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 52/221 (23%)
Query: 3 ADFAIMFADLAILFADLAIMVADLAIFFAD------FAIM--FADLAIMFADSRPE---- 50
A++ MF L++ I L++ + D ++ +++ +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 51 -SIFWIFGKPIPRLFMLHDR------RPKWFYLISLFTVFSTGVYLYYYPNPTSVDNNSS 103
SI+ + + LH PK F L + Y Y +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSH---------IG 478
Query: 104 YHPLVTQADDIRAEPTRAGY----FV--------YSNACKISELPVRNERLEHYFEPESF 151
+H + + R R + F+ + S L +L+ Y + +
Sbjct: 479 HHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFY---KPY 533
Query: 152 ESCRGWNDGKP-RLVGSNRTFLFIIKSALPYYVGNSTGSIQ 191
C ND K RLV + FL I+ L T ++
Sbjct: 534 -ICD--NDPKYERLVNAILDFLPKIEENL--ICSKYTDLLR 569
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 37.6 bits (87), Expect = 0.012
Identities = 12/66 (18%), Positives = 28/66 (42%)
Query: 482 HDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETYQGHLEERLPFL 541
Y+ R D L++++ +L K G + +++++ DH + + L E++
Sbjct: 222 DGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPA 281
Query: 542 FFIMPQ 547
F
Sbjct: 282 KFTDLN 287
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 37.9 bits (88), Expect = 0.013
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 23/112 (20%)
Query: 453 KTVLEYALKYTSALRNYF--YFAFVWTSSLTH------------------DYLNLPRLGD 492
+ + A + L +F+ V+TSS H N + D
Sbjct: 221 EDLYNKADEEFERLSKGDKPFFSLVFTSS-NHSPYEYPEGKIEQYDSEHMTRNNAVKYSD 279
Query: 493 SILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETYQGHLEERLPFLFFI 544
L F K+ + + TI I+ +DH R H +P L
Sbjct: 280 YALGTFFDKAKKSSYWDDTIFIVIADHDARVFGANLVPVKHF--HIPALIIG 329
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 36.2 bits (83), Expect = 0.036
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 39/193 (20%)
Query: 350 TFPNLVAALTGMSE------------KELEQTCYPTPESTFDDCPFLWKNFSAAGFKTLY 397
TFPN +TG+ L E+ D W G
Sbjct: 51 TFPNHYTLVTGLRPDHHGIVHNSMRDPTLGGFWLSKSEAVGD--ARWWG-----GEPVWV 103
Query: 398 AEDSFGMSTFNYFKSGFAKSPTDTFYNIFSKESEAVIGNTKILNAHLCMGSQLIFKTVLE 457
++ G + G + + + + V +T++ V
Sbjct: 104 GVENTGQHAATWSWPGSEAAIKGVRPSQWRHYQKGVRLDTRV-------------DAVRG 150
Query: 458 YALKYTSALRNYFYFAFVWTSSLTHDY-------LNLPRLGDSILQKFVKNLNKNGHLNR 510
+ + F HD+ + R D+ + + + + ++G R
Sbjct: 151 WLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRAR 210
Query: 511 TILILTSDHGLRW 523
T +I+ SDHG+
Sbjct: 211 TNIIVVSDHGMAE 223
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 34.8 bits (80), Expect = 0.094
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 478 SSLTHDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETY 530
S+ +Y D +++F +L K+G +++I+++ DH + +
Sbjct: 218 DSVVDNYFQSAHYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAM 270
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA
replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B
2wp0_A
Length = 186
Score = 32.3 bits (73), Expect = 0.33
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 18 DLAIMVADLAIFFADFAIMF-----ADLAIMFADSRPESIFWIFGKPIPRLFMLHDRRPK 72
D + +A + + + + + S+ S W+F + +L +
Sbjct: 101 DANLSLATIEMTYQNPMFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSL 160
Query: 73 WFY-LISLFTVF 83
Y L+ LF +F
Sbjct: 161 LDYKLLQLFKLF 172
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 33.2 bits (76), Expect = 0.33
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 502 LNKNGHLNRTILILTSDHGLRWGDFRETYQGHLEE---RLPFLF 542
L++ G + T++I TSDHG + GD + + R+P +
Sbjct: 337 LDETGQWDDTLIIFTSDHGEQLGDHHLLGKIGYNDPSFRIPLVI 380
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 33.0 bits (76), Expect = 0.35
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 502 LNKNGHLNRTILILTSDHGLRWGD 525
L TI+++ +DHG
Sbjct: 268 LYSTPAGRNTIVVIMADHGDGMAS 291
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 32.7 bits (73), Expect = 0.40
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPEYSVLVVG 311
PEP P P P R V + E + ++V+G
Sbjct: 4 PEPVPAGPPPDPTPPRRAGSVWAHVGQHF--TEEAFDIVVIG 43
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 32.0 bits (72), Expect = 0.83
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 492 DSILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETYQGH 533
D + + + L++ N T++ TSD G + + H
Sbjct: 295 DWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIH 336
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 30.5 bits (68), Expect = 1.5
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 259 VEVYTDFFSFVPEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
+ V + + P V P + +P P P E
Sbjct: 35 ISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80
Score = 30.1 bits (67), Expect = 2.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE 304
PEP P+ +P P P P+P + +
Sbjct: 63 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 97
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 494 ILQKFVKNLNKNGHLNRTILILTSDHGLRWGDFRETYQGHLEE---RLPFLF 542
I++ L +N + TI++ TSDHG+ G + E R+P +
Sbjct: 293 IIEA----LKQNNLFDNTIVVFTSDHGICMGAHENAGKDIFYEESMRIPMIL 340
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 30.7 bits (68), Expect = 2.5
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 492 DSILQKFVKNLNKNGHLNRTILILTSDHGLRW 523
D + + + L + +I DHG+
Sbjct: 297 DKTVGQLMDGLKQLKLHRCVNVIFVGDHGMED 328
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 29.7 bits (67), Expect = 4.6
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 277 DPQSRDPQSRVPQSDLPVPRPPDPPEPEYSVLVVG 311
D +DP R+ + V+VVG
Sbjct: 27 DDDDKDPGRRMMHNSNADDAALTTD-----VVVVG 56
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 311
Score = 29.3 bits (65), Expect = 4.7
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 71 PKWFYLISLFTVFSTGVYLYYYPN-PTSVDNNSSYHPLVTQADDIRAE 117
P+W++L+ + T+ +YL YP Y TQ E
Sbjct: 55 PRWWFLLFIGTLVFGILYLVLYPGLGNWKGVLPGYEGGWTQEKQWERE 102
>2d1g_A Acid phosphatase; ACPA, decavanadate vanadate, hydrolase; HET: DVT
ETE PGE; 1.75A {Francisella tularensis subsp}
Length = 498
Score = 28.8 bits (63), Expect = 8.8
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 482 HDYLNLPRLGDSILQKFVKNLNKNGHLNRTILILTSDHGLRWGD 525
H + P L + + ++ + T +I+ D D
Sbjct: 350 HGGYSNPLDEQEWLVNTINRIQQSKDWDSTAIIIIYDDSDGDYD 393
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,679,465
Number of extensions: 704887
Number of successful extensions: 1457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 37
Length of query: 756
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 655
Effective length of database: 3,881,772
Effective search space: 2542560660
Effective search space used: 2542560660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.0 bits)