RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1363
         (756 letters)



>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 26.7 bits (59), Expect = 5.9
 Identities = 8/32 (25%), Positives = 9/32 (28%)

Query: 270 PEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPP 301
           P       P    P +  P    P P    PP
Sbjct: 95  PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126


>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
           cruzi [TaxId: 5693]}
          Length = 139

 Score = 26.4 bits (57), Expect = 7.7
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 269 VPEPTPVSDPQSRDPQSRVPQSDLPVPRPPDPPEPE----YSVLVVGIDAVSRQNFLRQM 324
           +P  +   DP  +  Q +  Q       PP    PE     +++V  I     +  LRQ+
Sbjct: 4   IPLVSQ-YDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQL 62

Query: 325 SRTYKYLDTHYELVDMRGYNKIGD-----NTFPNLVAALTGMSEKELE 367
              Y  +++   + D       G       +  +   A+ G++   + 
Sbjct: 63  FERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0445    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,879,714
Number of extensions: 138421
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 4
Length of query: 756
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 664
Effective length of database: 1,144,436
Effective search space: 759905504
Effective search space used: 759905504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)