BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13631
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
GV+L++N TC +G+ E+LLL +RTD+ +ISLDTPD T+++L + ++HAIAID+DPVE
Sbjct: 294 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 353
Query: 65 HLYWTDDEAR 74
++YWTDDE R
Sbjct: 354 YIYWTDDEVR 363
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
GV+L++N TC +G+ E+LLL +RTD+ +ISLDTPD T+++L + ++HAIAID+DPVE
Sbjct: 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361
Query: 65 HLYWTDDEAR 74
++YWTDDE R
Sbjct: 362 YIYWTDDEVR 371
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ LL +R DI +ISL+T ++ NV +P+ GVK A A+D+D + +YWTD
Sbjct: 6 EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 55
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 10 VDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
DN TC+ LL Q++ I ++ +D +++LP+ +++ AID+DP+++ LYW
Sbjct: 299 ADNRTCS-APTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWI 357
Query: 70 D 70
D
Sbjct: 358 D 358
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ LL +R DI +ISL+T ++ NV +P+ GVK A A+D+D + +YWTD
Sbjct: 11 EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 60
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 10 VDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
DN TC+ LL Q++ I ++ +D +++LP+ +++ AID+DP+++ LYW
Sbjct: 304 ADNRTCS-APTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWI 362
Query: 70 D 70
D
Sbjct: 363 D 363
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ LL +R DI +ISL+T ++ NV +P+ GVK A A+D+D + +YWTD
Sbjct: 4 EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 53
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 10 VDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
DN TC+ LL Q++ I ++ +D +++LP+ +++ AID+DP+++ LYW
Sbjct: 297 ADNRTCS-APTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWI 355
Query: 70 D 70
D
Sbjct: 356 D 356
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 16 ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
A GS L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 373 AVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 428
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 16 ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
A GS L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 79 AVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 134
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 16 ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
A GS L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 119 AVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 174
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 16 ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
A GS L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 391 AVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 446
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain
Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain
Pair
Length = 316
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 23 LLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 52
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 11 DNFTC-ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
D +C A G + +LL R DI ++ P + L + +++AIA+D+ + ++W+
Sbjct: 34 DRRSCKALGPEPVLLFANRIDIRQV---LPHRSEYTLLLNNLENAIALDFHHRRELVFWS 90
Query: 70 D 70
D
Sbjct: 91 D 91
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 49 VGVKHAIAIDWDPVEQHLYWTDDEAR 74
+ VKH + I D V +HLY+TD R
Sbjct: 229 ICVKHNVVIISDEVYEHLYFTDSFTR 254
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 11 DNFTC-ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
D +C A G + +LL R DI ++ P + L + +++AIA+D+ + ++W+
Sbjct: 77 DRRSCKALGPEPVLLFANRIDIRQV---LPHRSEYTLLLNNLENAIALDFHHRRELVFWS 133
Query: 70 D 70
D
Sbjct: 134 D 134
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 18 GSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
GS +LL R D+ ++ T N + V G++ A A+D+ +YW+D
Sbjct: 2 GSAPLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD 53
>pdb|2FGY|A Chain A, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
pdb|2FGY|B Chain B, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
Length = 542
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 10 VDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
V+N C S ++LL+ TD I + PD + P V + + Q L+
Sbjct: 306 VENAHCCGASIDILLIGVDTDTDAIRVHIPDSKGFLNPYRYVDNTVT-----YAQTLHLA 360
Query: 70 DDEAR 74
DEAR
Sbjct: 361 PDEAR 365
>pdb|3HPG|A Chain A, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|B Chain B, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|C Chain C, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|D Chain D, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|E Chain E, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|F Chain F, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPH|A Chain A, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|B Chain B, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|C Chain C, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|D Chain D, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
Length = 219
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 40 DHTNVMLPVVGVKHAIAIDWDPVEQHL 66
+ T +++ +G++H I W+P Q L
Sbjct: 126 ESTQLLMKYLGIEHTTGIPWNPQSQAL 152
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 36 LDTPDHTNVMLPVVGVKHAIAIDWDPVE 63
L TP+ ++P++ + IA W+P +
Sbjct: 116 LITPEEAKEIVPLLDISEVIAASWNPTD 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,580,201
Number of Sequences: 62578
Number of extensions: 81568
Number of successful extensions: 160
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 42
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)