RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13631
(81 letters)
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 53.7 bits (128), Expect = 2e-10
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 4 FYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVE 63
L + + LL Q++ I ++ +D +++LP+ +++ AID+DP++
Sbjct: 292 PAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD 351
Query: 64 QHLYWTDDEARN 75
+ LYW D
Sbjct: 352 KQLYWIDSRQNM 363
Score = 53.3 bits (127), Expect = 3e-10
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
+ LL +R DI +ISL+T ++ V +P+ GVK A A+D+D + +YWTD +
Sbjct: 6 EAFLLFSRRADIRRISLETNNNN-VAIPLTGVKEASALDFDVTDNRIYWTDISLK 59
Score = 30.9 bits (69), Expect = 0.025
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 32 CKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
KI D + V V A + D ++ LYWTD
Sbjct: 146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTD 184
Score = 29.8 bits (66), Expect = 0.063
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + ++ +V+ + +A+DW + ++LYW D
Sbjct: 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDW--LGKNLYWAD 98
Score = 28.6 bits (63), Expect = 0.19
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 31 ICKISLDTPDHTNVMLPVVGVK----HAIAIDWDPVEQHLYWTD 70
I K D V++ V + + D +++YWT
Sbjct: 364 IRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407
Score = 28.2 bits (62), Expect = 0.28
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I LD V+ A+ ++ P + ++Y+T+
Sbjct: 413 INVTRLDGRSVGVVLKGEQDRPRAVVVN--PEKGYMYFTN 450
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 52.4 bits (125), Expect = 6e-10
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 18 GSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
GS +LL R D+ + N + V G++ A A+D+ +YW+D
Sbjct: 2 GSAPLLLYANRRDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 57
Score = 29.3 bits (65), Expect = 0.091
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + + + + V G+ + D + + LYWTD
Sbjct: 59 IKRTEFNKTESVQN-VVVSGLLSPDGLACDWLGEKLYWTD 97
Score = 25.4 bits (55), Expect = 2.1
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + +D ++ + + D EQ LYW D
Sbjct: 147 IERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWAD 184
Score = 25.4 bits (55), Expect = 2.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I +LD + + AIA+D P +YWTD
Sbjct: 103 IEVSNLDGSLRKVLFWQELDQPRAIALD--PSSGFMYWTD 140
Score = 24.6 bits (53), Expect = 4.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I K +LD + V+ + H A+ E LYWTD
Sbjct: 190 IHKSNLDGTNRQAVVKG--SLPHPFALTLF--EDILYWTD 225
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 52.1 bits (124), Expect = 8e-10
Identities = 36/64 (56%), Positives = 52/64 (81%)
Query: 11 DNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ TC +G+ E+LLL +RTD+ +ISLDTPD T+++L + ++HAIAID+DPVE ++YWTD
Sbjct: 308 NGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTD 367
Query: 71 DEAR 74
DE R
Sbjct: 368 DEVR 371
Score = 51.0 bits (121), Expect = 2e-09
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 15 CANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
+ +LL R D+ + N + V G++ A A+D+ +YW+D
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Score = 31.3 bits (70), Expect = 0.019
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + +D V+ + IA+DW V ++LYWTD
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDW--VARNLYWTD 410
Score = 27.9 bits (61), Expect = 0.38
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I +LD + + AIA+D P +YWTD
Sbjct: 108 IEVSNLDGSLRKVLFWQELDQPRAIALD--PSSGFMYWTD 145
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I L+ ++ + AI +D P+ ++YWTD
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLD--PMVGYMYWTD 453
Score = 24.4 bits (52), Expect = 5.1
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDE 72
I + +LD D ++ +G + +A+D+D E +YW D +
Sbjct: 460 IERAALDGSDRVVLVNTSLGWPNGLALDYD--EGKIYWGDAK 499
>1npe_A Nidogen, entactin; glycoprotein, basement membrane,
beta-propeller, EGF-like, structural protein; 2.30A
{Mus musculus} SCOP: b.68.5.1
Length = 267
Score = 50.2 bits (120), Expect = 4e-09
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 23 LLLVQRTDICKISLDTPDHTNV---MLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
LL Q I ++ L+ + K I + +D V++ +YWTD
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Score = 31.7 bits (72), Expect = 0.012
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + SL + T ++ +G IA+D + + ++WTD
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDH--LGRTIFWTD 97
Score = 27.9 bits (62), Expect = 0.27
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I +D + +L + + +D L W D
Sbjct: 148 IETSHMDGTNRR--ILAQDNLGLPNGLTFDAFSSQLCWVD 185
Score = 27.1 bits (60), Expect = 0.47
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 33 KISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ P + G+++ A+ ++LY+TD
Sbjct: 190 RAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTD 225
Score = 27.1 bits (60), Expect = 0.50
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I +D +L G+ + I DPV +LYWTD
Sbjct: 103 IEVAKMDGTQRR--VLFDTGLVNPRGIVTDPVRGNLYWTD 140
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 49.7 bits (118), Expect = 6e-09
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 22 MLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
L R ++ K++LD ++T++ + +++ +A+D + +YW+D R
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 52
Score = 30.8 bits (69), Expect = 0.032
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 31 ICKISLDTPDHTNVMLPVV--GVKHAIAIDWDPVEQHLYWTD 70
IC LD + V+ ++ + D + ++YWTD
Sbjct: 54 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 95
Score = 28.1 bits (62), Expect = 0.24
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I I ++ + ++ + H ++ E ++WTD
Sbjct: 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 225
Score = 26.6 bits (58), Expect = 0.89
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNK 76
+ + AI +D PV +YWTD K
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTDWGTPAK 144
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding;
HET: NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 38.7 bits (89), Expect = 4e-05
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 11 DNFTC-ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
D +C A G + +LL R DI ++ ++T L + +++AIA+D+ + ++W+
Sbjct: 34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWS 90
Query: 70 DDEARN 75
D
Sbjct: 91 DVTLDR 96
Score = 30.2 bits (67), Expect = 0.040
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + +L+ + V+ + +A+DW V LYWTD
Sbjct: 97 ILRANLNGSNVEEVVSTGLESPGGLAVDW--VHDKLYWTD 134
Score = 26.8 bits (58), Expect = 0.69
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I +LD ++ + AIA+ P+E +YWTD
Sbjct: 140 IEVANLDGAHRKVLLWQSLEKPRAIALH--PMEGTIYWTD 177
Score = 24.1 bits (51), Expect = 6.3
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + +LD V+ + AI + E LYWTD
Sbjct: 227 IERANLDGSHRKAVISQGLPHPFAITVF----EDSLYWTD 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 31.4 bits (70), Expect = 0.019
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 26 VQRTDICKISLDTPDHTNVMLPVV--GVKHAIAIDWDPVEQHLYWTD 70
+ + IC LD + V+ ++ + D + ++YWTD
Sbjct: 131 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 177
Score = 27.9 bits (61), Expect = 0.28
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I I ++ + ++ + H ++ E ++WTD
Sbjct: 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 307
Score = 25.6 bits (55), Expect = 1.8
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ + AI +D PV +YWTD
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVD--PVHGFMYWTD 220
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I K L+ D +++ + + I +D + LYW D
Sbjct: 227 IKKGGLNGVDIYSLVTENIQWPNGITLDL--LSGRLYWVD 264
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 29.4 bits (65), Expect = 0.084
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 31 ICKISLDTPDHTNVMLPVV--GVKHAIAIDWDPVEQHLYWTD 70
IC LD + V+ ++ + D + ++YWTD
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 471
Score = 27.8 bits (61), Expect = 0.35
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I I ++ + ++ + H ++ E ++WTD
Sbjct: 564 ISSIDVNGGNRKTILEDEKRLAHPFSLA--VFEDKVFWTD 601
Score = 27.1 bits (59), Expect = 0.61
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 15 CANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
A GS L R ++ K++LD ++T+++ + ++ +A+D + +YW+D R
Sbjct: 372 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQR 428
Score = 24.4 bits (52), Expect = 6.3
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
+ + AI +D PV +YWTD
Sbjct: 477 VSVADTKGVKRKTLFREQGSKPRAIVVD--PVHGFMYWTD 514
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.4 bits (65), Expect = 0.087
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 1 MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWD 60
+ + V I + +L+ + V+ + +A+DW
Sbjct: 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW- 168
Query: 61 PVEQHLYWTD 70
V LYWTD
Sbjct: 169 -VHDKLYWTD 177
Score = 25.5 bits (55), Expect = 2.1
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 53 HAIAIDWDPVEQHLYWTD 70
AIA+ P+E +YWTD
Sbjct: 205 RAIALH--PMEGTIYWTD 220
Score = 24.7 bits (53), Expect = 3.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I + +LD V+ + AI + E LYWTD
Sbjct: 270 IERANLDGSHRKAVISQGLPHPFAITVF----EDSLYWTD 305
Score = 24.7 bits (53), Expect = 4.1
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I S+D + + + + ID+ + +YW D
Sbjct: 227 IEASSMDGSGRRIIADTHLFWPNGLTIDY--AGRRMYWVD 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 29.0 bits (64), Expect = 0.12
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 31 ICKISLDTPDHTNVMLPVV--GVKHAIAIDWDPVEQHLYWTD 70
IC LD + V+ ++ + D + ++YWTD
Sbjct: 448 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 489
Score = 27.5 bits (60), Expect = 0.49
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
I I ++ + ++ + H ++ E ++WTD
Sbjct: 582 ISSIDVNGGNRKTILEDEKRLAHPFSLA--VFEDKVFWTD 619
Score = 26.3 bits (57), Expect = 1.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 13 FTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDE 72
A GS L R ++ K++LD ++T++ + +++ +A+D + +YW+D
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLS 444
Query: 73 AR 74
R
Sbjct: 445 QR 446
Score = 24.4 bits (52), Expect = 5.1
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 53 HAIAIDWDPVEQHLYWTD 70
AI +D PV +YWTD
Sbjct: 517 RAIVVD--PVHGFMYWTD 532
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 28.0 bits (63), Expect = 0.23
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 59 WDPVEQHLYWTD 70
W+ V L + D
Sbjct: 20 WEEVSNSLLFVD 31
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PSI-2; 1.55A {Agrobacterium tumefaciens
str} SCOP: b.68.6.1
Length = 326
Score = 28.0 bits (63), Expect = 0.24
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 59 WDPVEQHLYWTD 70
+DP +W +
Sbjct: 56 FDPASGTAWWFN 67
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 27.0 bits (60), Expect = 0.57
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 59 WDPVEQHLYWTD 70
W ++ L W+D
Sbjct: 52 WWEAQRTLVWSD 63
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 26.6 bits (59), Expect = 0.82
Identities = 2/12 (16%), Positives = 6/12 (50%)
Query: 59 WDPVEQHLYWTD 70
+ P + ++D
Sbjct: 35 YVPARSAVIFSD 46
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 4 FYGVRLVDNFTCANGSQEMLLLVQRT 29
YG ANGS E+L + R
Sbjct: 77 LYGFD-PSWIIMANGSDEVLNNLIRA 101
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 25.6 bits (57), Expect = 1.8
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 4 FYGVRLVDNFTCANGSQEMLLLVQRT 29
V NGS E++ ++
Sbjct: 79 VMQVPAGMEVLLGNGSDEIISMLALA 104
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G
joint center for structural genomics, JCSG; HET: MSE
PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 25.6 bits (57), Expect = 1.8
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 4 FYGVRLVDNFTCANGSQEMLLLVQRT 29
+ V + GS E +
Sbjct: 63 HHQVE-APSILLTAGSSEGIRAAIEA 87
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 36 LDTPDH--TNVMLPVVGVKHAIAIDW----DPVEQHL 66
LD D + + G+ I W D + +
Sbjct: 400 LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEI 436
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 24.8 bits (55), Expect = 3.9
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 4 FYGVRLV--DNFTCANGSQEMLLLVQRT 29
+ + +N + NG+ E++ ++
Sbjct: 68 YLDTDFLSKNNVSVGNGADEIIYVMMLM 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.9
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 21/69 (30%)
Query: 7 VRLVDNFTCAN------GSQEML-LLVQRTDICKI-SLDTPDHTNVMLPVVGVKHAIAID 58
V +V N+ N G L + + K+ +D + L ++
Sbjct: 1841 VEIV-NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID-----IIELQK-------SLS 1887
Query: 59 WDPVEQHLY 67
+ VE HL+
Sbjct: 1888 LEEVEGHLF 1896
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 24.1 bits (53), Expect = 6.7
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 4 FYGVRLVDNFTCANGSQEMLLLVQRT 29
+ GV+ + + G+ E + L+ R
Sbjct: 70 YAGVK-PEQVLVSRGADEGIELLIRA 94
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 23.8 bits (51), Expect = 8.6
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 25 LVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHL 66
L Q T I + + + + M+ +H I + VE+HL
Sbjct: 214 LSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTPKLVEEHL 255
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 23.4 bits (50), Expect = 10.0
Identities = 5/72 (6%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 3 HFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPD------HTNVMLPVVGVKHAIA 56
++ +++ + +I +I+ + ++ ++ +
Sbjct: 190 SYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILT 249
Query: 57 IDWDPVEQHLYW 68
+ D V+ H
Sbjct: 250 LSEDIVDGHERA 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.438
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,274,604
Number of extensions: 59752
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 67
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)