RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13631
         (81 letters)



>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL)
          receptor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 266

 Score = 53.0 bits (126), Expect = 1e-10
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 23 LLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          L    R ++ K++LD  ++T     +  +++ +A+D +     +YW+D
Sbjct: 4  LFFTNRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSD 48



 Score = 28.3 bits (62), Expect = 0.079
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 31  ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
           I  I ++  +   ++     + H  ++     E  ++WTD
Sbjct: 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 225


>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 263

 Score = 51.4 bits (122), Expect = 4e-10
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 23 LLLVQRTDICKISLDTPDHTNV---MLPVVGVKHAIAIDWDPVEQHLYWTDDEARN 75
          LL  Q   I ++ L+              +  K  I + +D V++ +YWTD    +
Sbjct: 4  LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS 59



 Score = 25.2 bits (54), Expect = 0.96
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 31  ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
              ++   P    V   + G+++  A+      ++LY+TD
Sbjct: 191 AECLNPAQPGRRKV---LEGLQYPFAVTSY--GKNLYYTD 225



 Score = 24.1 bits (51), Expect = 2.7
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          I + SL   + T ++   +G    IA+D   + + ++WTD
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDH--LGRTIFWTD 97


>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
          [TaxId: 358]}
          Length = 295

 Score = 24.6 bits (52), Expect = 1.6
 Identities = 3/12 (25%), Positives = 6/12 (50%)

Query: 59 WDPVEQHLYWTD 70
          +DP     +W +
Sbjct: 25 FDPASGTAWWFN 36


>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
           MYST1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 23.2 bits (50), Expect = 4.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 45  MLPVVGVKHAIAIDWDPVEQHL 66
           M+     +H I +    VE+HL
Sbjct: 229 MVKYWKGQHVICVTPKLVEEHL 250


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 22.9 bits (49), Expect = 7.0
 Identities = 7/41 (17%), Positives = 13/41 (31%)

Query: 41  HTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGESH 81
           HT   +     +  +   +   +      DDEA    G+  
Sbjct: 194 HTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDR 234


>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 270

 Score = 22.5 bits (48), Expect = 7.7
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 45  MLPVVGVKHAIAIDWDPVEQHL 66
           ML     +  I      ++ H+
Sbjct: 230 MLDFRSDQFVIIRREKLIQDHM 251


>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
           1351]}
          Length = 474

 Score = 22.5 bits (48), Expect = 8.6
 Identities = 5/39 (12%), Positives = 11/39 (28%)

Query: 41  HTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE 79
           HT   +   G    +   +   +         A   +G+
Sbjct: 194 HTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGK 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,611
Number of extensions: 11235
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 14
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)