BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13634
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLXXXXXXXX 59
M W++WG I+R+A+DG++R+ L+ V +AN LT++Y ++R+Y+ +L
Sbjct: 137 MYWTEWGGKP--KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194
Query: 60 XXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIND 119
G N+ ++A+ P LT Y+ I++++W +RSIE+ +KTS I + + D
Sbjct: 195 MLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD 253
Query: 120 MLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM--VNGTCMAPSS 177
+L++H SRQ+GWN+CA +N C +LCLA P G + C CP HY++ N TC AP++
Sbjct: 254 ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTT 309
Query: 178 FLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
FL+++Q++ ++R++ D Q PD I +++N++A+DYDP+ +Q+YWIDS+ I++A E
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 238 NATR 241
+ ++
Sbjct: 370 DGSQ 373
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 14 IERSALDGTQRSVLLHKVKANSLTVNYDEK--RVYYVNLLXXXXXXXXXXGRNKITIVAN 71
IER+ALDGT+R VL + + + D + ++++ + G N+I + +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS 517
Query: 72 IEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDM-----LIYHPS 126
+PV LT++++ +++ + ++ IEK D T ++ +++D+ L
Sbjct: 518 NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEY 577
Query: 127 RQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN 169
RQ + CA N C ++CL +G G +C CP H ++
Sbjct: 578 RQ---HPCAQDNGGCSHICLV---KGDGTT-RCSCPMHLVLLQ 613
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 174 APSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233
P +FL++++R + R I+ T + + VK ALD+D +IYW D L+ I
Sbjct: 4 VPEAFLLFSRRADIRR-ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 234 RASENATRI 242
RA N + +
Sbjct: 63 RAFMNGSAL 71
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLXXXXXXXX 59
M W++WG I+R+A+DG++R+ L+ V +AN LT++Y ++R+Y+ +L
Sbjct: 142 MYWTEWGGKP--KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 199
Query: 60 XXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIND 119
G N+ ++A+ P LT Y+ I++++W +RSIE+ +KTS I + + D
Sbjct: 200 MLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD 258
Query: 120 MLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM--VNGTCMAPSS 177
+L++H SRQ+GWN+CA +N C +LCLA P G + C CP HY++ N TC AP++
Sbjct: 259 ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTT 314
Query: 178 FLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
FL+++Q++ ++R++ D Q PD I +++N++A+DYDP+ +Q+YWIDS+ I++A E
Sbjct: 315 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 374
Query: 238 NATR 241
+ ++
Sbjct: 375 DGSQ 378
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 14 IERSALDGTQRSVLLHKVKANSLTVNYDEK--RVYYVNLLXXXXXXXXXXGRNKITIVAN 71
IER+ALDGT+R VL + + + D + ++++ + G N+I + +
Sbjct: 463 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS 522
Query: 72 IEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDM-----LIYHPS 126
+PV LT++++ +++ + ++ IEK D T ++ +++D+ L
Sbjct: 523 NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEY 582
Query: 127 RQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN 169
RQ + CA N C ++CL +G G +C CP H ++
Sbjct: 583 RQ---HPCAQDNGGCSHICLV---KGDGTT-RCSCPMHLVLLQ 618
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 174 APSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233
P +FL++++R + R I+ T + + VK ALD+D +IYW D L+ I
Sbjct: 9 VPEAFLLFSRRADIRR-ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 67
Query: 234 RASENATRI 242
RA N + +
Sbjct: 68 RAFMNGSAL 76
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLXXXXXXXX 59
M W++WG I+R+A+DG++R+ L+ V +AN LT++Y ++R+Y+ +L
Sbjct: 135 MYWTEWGGKP--KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 192
Query: 60 XXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIND 119
G N+ ++A+ P LT Y+ I++++W +RSIE+ +KTS I + + D
Sbjct: 193 MLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD 251
Query: 120 MLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM--VNGTCMAPSS 177
+L++H SRQ+GWN+CA +N C +LCLA P G + C CP HY++ N TC AP++
Sbjct: 252 ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTT 307
Query: 178 FLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
FL+++Q++ ++R++ D Q PD I +++N++A+DYDP+ +Q+YWIDS+ I++A E
Sbjct: 308 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 367
Query: 238 NATR 241
+ ++
Sbjct: 368 DGSQ 371
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 14 IERSALDGTQRSVLLHKVKANSLTVNYDEK--RVYYVNLLXXXXXXXXXXGRNKITIVAN 71
IER+ALDGT+R VL + + + D + ++++ + G N+I + +
Sbjct: 456 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS 515
Query: 72 IEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDM-----LIYHPS 126
+PV LT++++ +++ + ++ IEK D T ++ +++D+ L
Sbjct: 516 NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEY 575
Query: 127 RQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG--TCMAP 175
RQ + CA N C ++CL +G G +C CP H ++ +C P
Sbjct: 576 RQ---HPCAQDNGGCSHICLV---KGDGTT-RCSCPMHLVLLQDELSCGEP 619
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
P +FL++++R + R I+ T + + VK ALD+D +IYW D L+ I R
Sbjct: 3 PEAFLLFSRRADIRR-ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 61
Query: 235 ASENATRI 242
A N + +
Sbjct: 62 AFMNGSAL 69
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ +
Sbjct: 133 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 190
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 191 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 250
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NG-TCM-A 174
D+ + RQ N C + N C +LCL +P + Y+C CPT ++ NG TC
Sbjct: 251 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGVKLLENGKTCKDG 307
Query: 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
+ L+ A+R L R+ D D ++ ++++ A+DYDPV IYW D +++AI+R
Sbjct: 308 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRR 367
Query: 235 A 235
+
Sbjct: 368 S 368
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKA--NSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ALDG+ R VL++ N L ++YDE ++Y+ +
Sbjct: 441 MYWTDWG--EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 498
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G + +V + TL +++++W +RSIE+ K S R VI ++
Sbjct: 499 NTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVII-DQLPDLM 557
Query: 119 DMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG--TCMAPS 176
+ + R G N CA N C +LCL P +C CP + +++ TC+ P
Sbjct: 558 GLKATNVHRVIGSNPCAEENGGCSHLCLYRPQ-----GLRCACPIGFELISDMKTCIVPE 612
Query: 177 SFLI 180
+FL+
Sbjct: 613 AFLL 616
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 176 SSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +AIKR
Sbjct: 1 APLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 236 SENATR 241
N T
Sbjct: 60 EFNKTE 65
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ +
Sbjct: 141 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 199 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 258
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NG-TCM-A 174
D+ + RQ N C + N C +LCL +P + Y+C CPT ++ NG TC
Sbjct: 259 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGVKLLENGKTCKDG 315
Query: 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
+ L+ A+R L R+ D D ++ ++++ A+DYDPV IYW D +++AI+R
Sbjct: 316 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRR 375
Query: 235 A 235
+
Sbjct: 376 S 376
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKA--NSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ALDG+ R VL++ N L ++YDE ++Y+ +
Sbjct: 449 MYWTDWG--EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G + +V + TL +++++W +RSIE+ K S R VI ++
Sbjct: 507 NTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVII-DQLPDLM 565
Query: 119 DMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG--TCMAP 175
+ + R G N CA N C +LCL P +C CP + +++ TC+ P
Sbjct: 566 GLKATNVHRVIGSNPCAEENGGCSHLCLYRPQ-----GLRCACPIGFELISDMKTCIVP 619
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 176 SSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +AIKR
Sbjct: 9 APLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 67
Query: 236 SENATR 241
N T
Sbjct: 68 EFNKTE 73
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLL--HKVKANSLTVNYDEKRVYYVNLLXXXXXXX 58
+ W+DWG N IE S++DG+ R ++ H N LT++Y +R+Y+V+
Sbjct: 173 IYWTDWG--NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G ++ +++ P +T+++ +++++W +SI +K + I R+
Sbjct: 231 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPM 290
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMA 174
D+ HP RQ G N+C N C +LCL + G NY C CPT + +N A
Sbjct: 291 DIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS-----GQNYTCACPTGFRKINSHACA 342
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV----NGTCMAPSSFLIYAQRNIL 187
N+CA C C + G ++C C Y + + + P L++A R +
Sbjct: 2 NECA-EEGYCSQGCTNSEGA-----FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Query: 188 SRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENATRI 242
+++ ++ + N++N ALD+ ++W D L I RA+ N + +
Sbjct: 56 RQVLPHRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLL--HKVKANSLTVNYDEKRVYYVNLLXXXXXXX 58
+ W+DWG N IE S++DG+ R ++ H N LT++Y +R+Y+V+
Sbjct: 216 IYWTDWG--NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G ++ +++ P +T+++ +++++W +SI +K + I R+
Sbjct: 274 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPM 333
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN 169
D+ HP RQ G N+C N C +LCL + G NY C CPT + +N
Sbjct: 334 DIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS-----GQNYTCACPTGFRKIN 380
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV----NGTCMAPSSFLIYAQRNIL 187
N+CA C C + G ++C C Y + + + P L++A R +
Sbjct: 45 NECA-EEGYCSQGCTNSEGA-----FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 98
Query: 188 SRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENATRI 242
+++ ++ + N++N ALD+ ++W D L I RA+ N + +
Sbjct: 99 RQVLPHRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ +
Sbjct: 133 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 190
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 191 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 250
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NG-TCMAP 175
D+ + RQ N C + N C +LCL +P + Y+C CPT ++ NG TC
Sbjct: 251 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGVKLLENGKTCKDG 307
Query: 176 SSFLIYAQR 184
++ L+ R
Sbjct: 308 ATELLLLAR 316
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 176 SSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +AIKR
Sbjct: 1 APLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 236 SENATR 241
N T
Sbjct: 60 EFNKTE 65
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 10/177 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ +
Sbjct: 136 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 194 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 253
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NG-TC 172
D+ + RQ N C + N C +LCL +P + Y+C CPT ++ NG TC
Sbjct: 254 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGVKLLENGKTC 307
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 176 SSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +AIKR
Sbjct: 4 APLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 236 SENATR 241
N T
Sbjct: 63 EFNKTE 68
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQ-RSVLLHKVK-ANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG I++ L+G S++ ++ N +T++ R+Y+V+
Sbjct: 134 MYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191
Query: 59 XXXGRNKITIVANIEDK-----PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSS 113
G N+ TI +ED+ P +L +++ ++F+++ +I ++ + + + +
Sbjct: 192 DVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248
Query: 114 EKEINDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPG-RGGGLNYKCECP 162
DM+++H Q G N C ++N C YLCL P + C CP
Sbjct: 249 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 302
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 177 SFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAI 232
++L + R+ + ++ D ++ IPN++N+ ALD + + +IYW D + I
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMI 54
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQ-RSVLLHKVK-ANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG I++ L+G S++ ++ N +T++ R+Y+V+
Sbjct: 216 MYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 273
Query: 59 XXXGRNKITIVANIEDK-----PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSS 113
G N+ TI +ED+ P +L +++ ++F+++ +I ++ + + + +
Sbjct: 274 DVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Query: 114 EKEINDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPG-RGGGLNYKCECP 162
DM+++H Q G N C ++N C YLCL P + C CP
Sbjct: 331 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 384
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 139 NECDYLCLATPGRGGGLNYKCECPTHYTMVNGT--CMAPSS--FLIYAQRNILSRLITDP 194
+ C LC+ G YKC+C + + T C A S +L + R+ + ++ D
Sbjct: 47 DTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 101
Query: 195 TQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAI 232
++ IPN++N+ ALD + + +IYW D + I
Sbjct: 102 SE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI 136
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQ-RSVLLHKVK-ANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG I++ L+G S++ ++ N +T++ R+Y+V+
Sbjct: 256 MYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 313
Query: 59 XXXGRNKITIVANIEDK-----PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSS 113
G N+ TI +ED+ P +L +++ ++F+++ +I ++ + + + +
Sbjct: 314 DVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 370
Query: 114 EKEINDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPG-RGGGLNYKCECP 162
DM+++H Q G N C ++N C YLCL P + C CP
Sbjct: 371 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 424
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 139 NECDYLCLATPGRGGGLNYKCECPTHYTMVNGT--CMAPSS--FLIYAQRNILSRLITDP 194
+ C LC+ G YKC+C + + T C A S +L + R+ + ++ D
Sbjct: 87 DTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 141
Query: 195 TQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAI 232
++ IPN++N+ ALD + + +IYW D + I
Sbjct: 142 SE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI 176
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQ-RSVLLHKVK-ANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG I++ L+G S++ ++ N +T++ R+Y+V+
Sbjct: 528 MYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 585
Query: 59 XXXGRNKITIVANIEDK-----PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSS 113
G N+ TI +ED+ P +L +++ ++F+++ +I ++ + + + +
Sbjct: 586 DVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 642
Query: 114 EKEINDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPG-RGGGLNYKCECPTHYTMV 168
DM+++H Q G N C ++N C YLCL P + C CP +
Sbjct: 643 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 702
Query: 169 NG--TCMAPSSFLIYAQRNILSRLITDPT 195
+C+ + + Q RL T
Sbjct: 703 RDMRSCLTEAEAAVATQETSTVRLKVSST 731
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 139 NECDYLCLATPGRGGGLNYKCECPTHYTMVNGT--CMAPSS--FLIYAQRNILSRLITDP 194
+ C LC+ G YKC+C + + T C A S +L + R+ + ++ D
Sbjct: 359 DTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 413
Query: 195 TQCPDSPYEIPNVKNIKALDYDPVARQIYWID 226
++ IPN++N+ ALD + + +IYW D
Sbjct: 414 SEYTSL---IPNLRNVVALDTEVASNRIYWSD 442
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQ-RSVLLHKVK-ANSLTVNYDEKRVYYVNLLXXXXXXX 58
M W+DWG I++ L+G S++ ++ N +T++ R+Y+V+
Sbjct: 510 MYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567
Query: 59 XXXGRNKITIVANIEDK-----PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSS 113
G N+ TI +ED+ P +L +++ ++F+++ +I ++ + + + +
Sbjct: 568 DVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624
Query: 114 EKEINDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPG-RGGGLNYKCECP 162
DM+++H Q G N C ++N C YLCL P + C CP
Sbjct: 625 LLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACP 678
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 139 NECDYLCLATPGRGGGLNYKCECPTHYTMVNGT--CMAPSS--FLIYAQRNILSRLITDP 194
+ C LC+ G YKC+C + + T C A S +L + R+ + ++ D
Sbjct: 341 DTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 395
Query: 195 TQCPDSPYEIPNVKNIKALDYDPVARQIYWID 226
++ IPN++N+ ALD + + +IYW D
Sbjct: 396 SE---YTSLIPNLRNVVALDTEVASNRIYWSD 424
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKA--NSLTVNYDEKRVYYVNLLXXXXXXX 58
+ W+DW N IE S +DGT R +L N LT + ++ +V+
Sbjct: 136 LYWTDWNRDNP-KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
Query: 59 XXXGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+ ++ ++ P +T Y ++Y++W S+ D + KE++
Sbjct: 195 NPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMD----------LAISKEMD 243
Query: 119 DMLIYHPSRQTGWNKCAVANNEC 141
+HP +QT +A ++C
Sbjct: 244 ---TFHPHKQTRLYGITIALSQC 263
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 200 SPYEIPNVKNIKALDYDPVARQIYWIDSKLQAI 232
SP E+ N+KNI + + + +Q+ W K+ +
Sbjct: 499 SPQEVKNIKNINLIARNTIGKQLGWFSGKIYGL 531
>pdb|3Q06|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|C Chain C, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|D Chain D, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
Length = 231
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 161 CPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQCPDS---PYEIPNV 207
CP H + +AP LI + N+ + + DP S PYE P V
Sbjct: 81 CPHHERSSDSDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEV 130
>pdb|3Q01|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q01|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
Length = 233
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 161 CPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQCPDS---PYEIPNV 207
CP H + +AP LI + N+ + + DP S PYE P V
Sbjct: 83 CPHHERSSDSDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEV 132
>pdb|3Q05|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|C Chain C, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|D Chain D, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3TS8|A Chain A, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|B Chain B, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|C Chain C, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|D Chain D, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
Length = 234
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 161 CPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQCPDS---PYEIPNV 207
CP H + +AP LI + N+ + + DP S PYE P V
Sbjct: 83 CPHHERSSDSDGLAPPQHLIRVEGNLRAEYLDDPNTFRHSVVVPYEPPEV 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,207,716
Number of Sequences: 62578
Number of extensions: 272661
Number of successful extensions: 703
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 63
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)