Query psy13634
Match_columns 242
No_of_seqs 199 out of 1476
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:18:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 5.3E-35 1.2E-39 267.2 11.9 158 1-166 1125-1286(1289)
2 KOG1215|consensus 100.0 4.7E-31 1E-35 257.5 20.1 231 1-239 537-808 (877)
3 KOG1214|consensus 99.9 1.9E-22 4.1E-27 185.4 15.3 183 1-240 1039-1228(1289)
4 KOG1215|consensus 99.8 1.1E-19 2.3E-24 177.8 17.5 211 1-241 253-470 (877)
5 PF00058 Ldl_recept_b: Low-den 99.3 2.4E-12 5.1E-17 78.4 4.7 38 1-40 3-42 (42)
6 PF14670 FXa_inhibition: Coagu 99.3 2.5E-12 5.4E-17 75.0 2.0 34 134-172 1-36 (36)
7 PF00058 Ldl_recept_b: Low-den 99.2 6.9E-11 1.5E-15 71.9 6.7 40 43-82 1-41 (42)
8 PF08450 SGL: SMP-30/Gluconola 99.0 8E-08 1.7E-12 80.6 20.7 181 1-240 14-215 (246)
9 PLN02919 haloacid dehalogenase 98.9 8.7E-07 1.9E-11 88.6 23.4 102 1-105 582-716 (1057)
10 smart00135 LY Low-density lipo 98.8 1.2E-08 2.7E-13 61.7 5.7 34 32-65 10-43 (43)
11 PF08450 SGL: SMP-30/Gluconola 98.8 1.3E-06 2.9E-11 73.2 19.4 158 32-239 1-165 (246)
12 PLN02919 haloacid dehalogenase 98.6 8.5E-06 1.9E-10 81.7 21.4 81 29-109 565-661 (1057)
13 smart00135 LY Low-density lipo 98.6 1.5E-07 3.1E-12 56.9 5.6 38 204-241 5-42 (43)
14 COG3386 Gluconolactonase [Carb 97.8 0.00035 7.6E-09 60.7 12.5 95 10-105 141-245 (307)
15 PF10282 Lactonase: Lactonase, 97.6 0.041 8.9E-07 48.6 21.7 164 32-238 145-322 (345)
16 TIGR02604 Piru_Ver_Nterm putat 97.3 0.032 6.9E-07 49.8 17.5 66 32-100 15-96 (367)
17 KOG4499|consensus 97.2 0.0048 1E-07 51.2 10.3 93 13-105 139-244 (310)
18 PF07645 EGF_CA: Calcium-bindi 97.2 0.00023 4.9E-09 43.0 2.0 37 131-172 2-42 (42)
19 PF03088 Str_synth: Strictosid 97.2 0.0034 7.4E-08 44.3 7.8 66 34-100 1-85 (89)
20 PF10282 Lactonase: Lactonase, 97.1 0.18 3.9E-06 44.5 21.5 191 10-238 11-222 (345)
21 PF12662 cEGF: Complement Clr- 96.9 0.00073 1.6E-08 35.5 2.1 19 157-175 2-22 (24)
22 COG3386 Gluconolactonase [Carb 96.9 0.11 2.4E-06 45.2 16.6 52 32-84 26-77 (307)
23 KOG1520|consensus 96.8 0.0046 9.9E-08 54.6 7.2 61 32-93 116-181 (376)
24 PF12947 EGF_3: EGF domain; I 96.8 0.00076 1.6E-08 39.2 1.6 34 134-172 1-36 (36)
25 PRK03629 tolB translocation pr 96.7 0.44 9.6E-06 43.4 23.3 219 11-241 178-409 (429)
26 cd01475 vWA_Matrilin VWA_Matri 96.7 0.0012 2.6E-08 54.7 2.8 34 130-168 186-219 (224)
27 KOG4659|consensus 96.7 0.23 4.9E-06 50.3 18.2 189 13-239 337-562 (1899)
28 COG2706 3-carboxymuconate cycl 96.6 0.44 9.5E-06 41.7 19.7 193 10-239 14-222 (346)
29 PF07995 GSDH: Glucose / Sorbo 96.5 0.06 1.3E-06 47.4 12.1 95 10-104 146-291 (331)
30 smart00181 EGF Epidermal growt 96.4 0.0044 9.5E-08 35.3 3.0 29 134-168 2-31 (35)
31 TIGR02604 Piru_Ver_Nterm putat 96.2 0.045 9.7E-07 48.8 9.8 88 11-100 89-211 (367)
32 PF07995 GSDH: Glucose / Sorbo 96.2 0.58 1.3E-05 41.2 16.6 56 32-89 3-69 (331)
33 TIGR03606 non_repeat_PQQ dehyd 96.1 0.88 1.9E-05 41.8 17.8 66 19-85 17-90 (454)
34 smart00179 EGF_CA Calcium-bind 96.0 0.009 1.9E-07 34.7 3.2 34 132-172 3-38 (39)
35 PRK11028 6-phosphogluconolacto 95.9 0.99 2.1E-05 39.2 23.0 90 11-100 11-108 (330)
36 TIGR02658 TTQ_MADH_Hv methylam 95.9 1.2 2.5E-05 39.7 20.3 93 12-105 27-139 (352)
37 PF09064 Tme5_EGF_like: Thromb 95.7 0.0094 2E-07 33.7 2.0 24 139-168 6-29 (34)
38 PF03088 Str_synth: Strictosid 95.5 0.035 7.5E-07 39.2 5.0 54 10-63 35-89 (89)
39 PRK11028 6-phosphogluconolacto 95.4 1.6 3.4E-05 37.9 21.4 92 11-102 56-156 (330)
40 PRK04922 tolB translocation pr 95.4 2 4.4E-05 39.0 22.2 94 12-105 184-283 (433)
41 PF01436 NHL: NHL repeat; Int 95.3 0.043 9.4E-07 29.8 3.9 25 32-57 3-27 (28)
42 PRK04792 tolB translocation pr 95.3 2.3 5E-05 39.0 23.7 95 11-105 197-297 (448)
43 PF01731 Arylesterase: Arylest 94.8 0.085 1.8E-06 37.0 5.2 44 17-60 39-83 (86)
44 cd00053 EGF Epidermal growth f 94.7 0.041 8.9E-07 30.8 3.0 25 139-168 6-32 (36)
45 PF06977 SdiA-regulated: SdiA- 94.6 2.5 5.3E-05 35.7 17.9 70 32-101 23-93 (248)
46 KOG1520|consensus 94.4 0.17 3.6E-06 44.9 7.2 100 11-112 135-262 (376)
47 TIGR03032 conserved hypothetic 93.5 1.5 3.3E-05 38.2 11.3 101 25-129 196-319 (335)
48 PF03022 MRJP: Major royal jel 93.3 0.62 1.3E-05 40.2 8.8 59 32-91 187-254 (287)
49 PRK04043 tolB translocation pr 93.2 6.4 0.00014 35.8 22.6 96 10-105 211-312 (419)
50 PRK02889 tolB translocation pr 92.8 7.3 0.00016 35.4 24.5 95 10-105 174-275 (427)
51 PF00008 EGF: EGF-like domain 92.7 0.056 1.2E-06 30.4 1.0 19 144-166 11-29 (32)
52 PRK05137 tolB translocation pr 92.5 8.1 0.00018 35.1 24.4 95 11-105 181-281 (435)
53 TIGR03866 PQQ_ABC_repeats PQQ- 92.4 2.7 5.8E-05 35.0 11.4 88 32-122 208-298 (300)
54 PRK05137 tolB translocation pr 92.0 4.2 9.2E-05 36.9 12.9 97 10-106 312-416 (435)
55 PF01436 NHL: NHL repeat; Int 91.6 0.75 1.6E-05 24.8 4.7 26 208-234 2-27 (28)
56 cd00054 EGF_CA Calcium-binding 91.6 0.27 5.8E-06 27.8 3.1 29 132-166 3-33 (38)
57 COG3391 Uncharacterized conser 91.3 10 0.00023 33.9 19.4 86 32-121 75-166 (381)
58 PF06977 SdiA-regulated: SdiA- 91.3 2.7 5.9E-05 35.4 10.0 60 32-91 172-240 (248)
59 COG3391 Uncharacterized conser 90.9 8.9 0.00019 34.3 13.6 94 11-105 127-242 (381)
60 PRK04792 tolB translocation pr 89.8 7.6 0.00017 35.6 12.4 94 10-105 328-427 (448)
61 PRK04043 tolB translocation pr 89.2 8.8 0.00019 34.9 12.3 94 10-105 299-403 (419)
62 PF12661 hEGF: Human growth fa 88.8 0.25 5.5E-06 21.9 1.0 9 158-166 1-9 (13)
63 PRK00178 tolB translocation pr 88.6 18 0.00039 32.6 23.4 94 12-105 179-278 (430)
64 PRK04922 tolB translocation pr 88.5 11 0.00024 34.2 12.5 93 10-103 314-412 (433)
65 TIGR02800 propeller_TolB tol-p 88.3 18 0.00039 32.2 23.6 95 10-105 168-269 (417)
66 TIGR02800 propeller_TolB tol-p 87.7 15 0.00032 32.8 12.7 83 10-93 300-386 (417)
67 KOG4659|consensus 87.2 1.8 3.8E-05 44.3 6.6 62 175-236 374-435 (1899)
68 PRK01742 tolB translocation pr 86.4 25 0.00055 31.9 22.1 95 11-105 183-283 (429)
69 PRK00178 tolB translocation pr 85.6 24 0.00051 31.9 12.9 92 10-102 309-406 (430)
70 PRK02889 tolB translocation pr 84.6 28 0.00062 31.5 12.9 93 10-102 306-403 (427)
71 KOG1219|consensus 83.3 1 2.2E-05 48.6 3.1 28 132-165 3865-3894(4289)
72 TIGR03032 conserved hypothetic 82.6 7.5 0.00016 34.0 7.7 83 32-122 153-250 (335)
73 TIGR03606 non_repeat_PQQ dehyd 82.4 2.4 5.3E-05 39.0 5.0 43 11-54 198-252 (454)
74 TIGR03866 PQQ_ABC_repeats PQQ- 82.0 27 0.00059 28.8 22.2 94 10-104 9-105 (300)
75 TIGR02658 TTQ_MADH_Hv methylam 81.6 38 0.00083 30.2 12.8 98 11-109 214-338 (352)
76 PRK03629 tolB translocation pr 81.3 42 0.00091 30.5 13.1 93 10-102 309-406 (429)
77 PF03022 MRJP: Major royal jel 81.1 5.3 0.00011 34.4 6.4 50 1-53 199-257 (287)
78 COG2706 3-carboxymuconate cycl 79.2 45 0.00097 29.5 19.9 95 11-105 63-178 (346)
79 TIGR02276 beta_rpt_yvtn 40-res 78.4 10 0.00022 21.6 5.9 37 83-121 3-40 (42)
80 TIGR03118 PEPCTERM_chp_1 conse 78.3 38 0.00082 29.7 10.5 77 32-110 190-288 (336)
81 KOG4499|consensus 78.1 36 0.00078 28.8 9.9 43 21-64 194-244 (310)
82 PF01731 Arylesterase: Arylest 75.0 8.6 0.00019 26.9 4.8 37 201-237 47-83 (86)
83 PRK01029 tolB translocation pr 73.2 74 0.0016 29.0 13.4 96 10-106 303-407 (428)
84 PF00930 DPPIV_N: Dipeptidyl p 72.4 17 0.00038 32.0 7.4 72 10-82 258-336 (353)
85 KOG1219|consensus 70.9 3.2 7E-05 45.1 2.6 23 145-174 3917-3939(4289)
86 PF01826 TIL: Trypsin Inhibito 70.5 5.6 0.00012 24.9 2.9 19 158-176 34-53 (55)
87 PRK01742 tolB translocation pr 70.3 84 0.0018 28.4 12.9 91 11-101 227-323 (429)
88 COG3204 Uncharacterized protei 68.6 80 0.0017 27.5 15.9 69 32-100 87-156 (316)
89 PF02333 Phytase: Phytase; In 67.0 79 0.0017 28.5 10.3 69 32-101 209-289 (381)
90 COG2133 Glucose/sorbosone dehy 65.8 8.9 0.00019 34.7 4.1 44 12-55 219-263 (399)
91 PHA02887 EGF-like protein; Pro 65.6 4.7 0.0001 29.7 1.9 16 157-174 108-123 (126)
92 PF08290 Hep_core_N: Hepatitis 64.4 3.2 6.9E-05 22.0 0.6 14 143-165 5-18 (27)
93 KOG4649|consensus 62.4 22 0.00049 30.4 5.6 52 32-94 32-83 (354)
94 TIGR02276 beta_rpt_yvtn 40-res 61.7 27 0.0006 19.7 5.9 40 41-81 2-41 (42)
95 COG4257 Vgb Streptogramin lyas 60.9 84 0.0018 27.3 8.7 86 20-107 50-137 (353)
96 PRK01029 tolB translocation pr 58.5 1.5E+02 0.0032 27.1 22.8 92 10-101 209-312 (428)
97 PHA03099 epidermal growth fact 57.2 7 0.00015 29.3 1.6 16 157-174 67-82 (139)
98 COG0823 TolB Periplasmic compo 57.0 1.1E+02 0.0024 28.0 9.6 94 12-105 218-317 (425)
99 PF05096 Glu_cyclase_2: Glutam 55.0 1.4E+02 0.0029 25.6 13.9 76 32-110 131-212 (264)
100 PF05345 He_PIG: Putative Ig d 52.2 16 0.00035 22.5 2.4 21 32-52 12-32 (49)
101 PF14759 Reductase_C: Reductas 51.0 39 0.00084 23.2 4.5 26 2-30 2-27 (85)
102 PF12946 EGF_MSP1_1: MSP1 EGF 50.0 7.6 0.00016 22.6 0.6 26 144-173 12-37 (37)
103 COG4257 Vgb Streptogramin lyas 49.8 1.8E+02 0.0038 25.4 10.2 68 43-110 244-313 (353)
104 PF05096 Glu_cyclase_2: Glutam 48.7 1.7E+02 0.0037 25.0 11.9 77 32-109 46-126 (264)
105 KOG0285|consensus 47.5 96 0.0021 27.8 7.2 93 10-104 288-391 (460)
106 COG3204 Uncharacterized protei 47.1 96 0.0021 27.0 7.0 58 32-89 234-300 (316)
107 KOG1671|consensus 46.3 9.3 0.0002 31.0 0.8 26 137-162 149-175 (210)
108 PF01683 EB: EB module; Inter 45.4 15 0.00032 22.6 1.5 16 157-172 37-52 (52)
109 PF13449 Phytase-like: Esteras 43.3 82 0.0018 27.5 6.4 36 32-68 86-127 (326)
110 KOG4289|consensus 42.7 20 0.00044 37.6 2.7 13 155-167 1737-1749(2531)
111 PF13449 Phytase-like: Esteras 42.6 1.6E+02 0.0035 25.6 8.2 72 32-105 21-122 (326)
112 COG2133 Glucose/sorbosone dehy 40.1 1.7E+02 0.0037 26.6 7.9 85 18-102 294-397 (399)
113 PF00930 DPPIV_N: Dipeptidyl p 39.8 2.6E+02 0.0056 24.5 9.9 101 11-111 209-325 (353)
114 PF14583 Pectate_lyase22: Olig 39.1 1.6E+02 0.0034 26.7 7.5 102 10-112 58-187 (386)
115 COG4946 Uncharacterized protei 36.1 3.7E+02 0.0081 25.2 17.0 87 10-101 204-304 (668)
116 PF02191 OLF: Olfactomedin-lik 35.1 2.7E+02 0.006 23.4 17.2 38 200-237 210-248 (250)
117 PF13360 PQQ_2: PQQ-like domai 35.1 2.3E+02 0.005 22.5 9.4 32 73-105 201-233 (238)
118 PF09717 CPW_WPC: Plasmodium f 34.1 22 0.00048 22.7 1.0 22 157-178 5-27 (60)
119 KOG4260|consensus 33.5 26 0.00056 30.0 1.6 33 131-168 236-270 (350)
120 PF06433 Me-amine-dh_H: Methyl 31.4 3.8E+02 0.0082 23.9 12.8 102 2-109 199-328 (342)
121 PF14759 Reductase_C: Reductas 30.1 98 0.0021 21.1 3.9 27 46-72 2-28 (85)
122 TIGR01492 CPW_WPC Plasmodium f 29.7 29 0.00063 22.4 1.0 21 157-177 6-28 (62)
123 PF06433 Me-amine-dh_H: Methyl 29.6 4.1E+02 0.0088 23.7 13.9 27 214-241 190-216 (342)
124 PF13570 PQQ_3: PQQ-like domai 29.5 1.1E+02 0.0024 17.2 3.7 24 78-102 16-39 (40)
125 PF04942 CC: CC domain; Inter 28.5 29 0.00064 19.9 0.8 13 160-172 19-32 (36)
126 KOG4289|consensus 24.5 54 0.0012 34.8 2.3 28 131-168 1244-1271(2531)
127 PF08309 LVIVD: LVIVD repeat; 24.3 1.6E+02 0.0035 17.3 5.5 28 76-104 4-31 (42)
128 PF02191 OLF: Olfactomedin-lik 23.3 1.9E+02 0.0042 24.3 5.2 64 39-105 27-100 (250)
129 PF06739 SBBP: Beta-propeller 22.8 90 0.0019 17.9 2.2 16 32-48 14-29 (38)
130 PF10530 Toxin_35: Toxin with 22.4 61 0.0013 16.6 1.2 10 132-141 6-15 (23)
131 PF02239 Cytochrom_D1: Cytochr 22.4 5.6E+02 0.012 22.8 13.1 94 11-109 15-116 (369)
132 smart00051 DSL delta serrate l 21.2 83 0.0018 20.4 2.0 28 139-166 28-59 (63)
133 PF07974 EGF_2: EGF-like domai 21.1 74 0.0016 17.6 1.5 10 157-166 19-28 (32)
No 1
>KOG1214|consensus
Probab=100.00 E-value=5.3e-35 Score=267.15 Aligned_cols=158 Identities=24% Similarity=0.482 Sum_probs=143.9
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCC--ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEE
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV--KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVT 78 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~ 78 (242)
||||||+. .+|+|+++.|||+||++|++.. .||||++|+.++.|+|+|+++.+.|+...+|..|++++ +++..||+
T Consensus 1125 LYwtDWnR-enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~-~~LqYPF~ 1202 (1289)
T KOG1214|consen 1125 LYWTDWNR-ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ-NNLQYPFS 1202 (1289)
T ss_pred eeeccccc-cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh-hcccCcee
Confidence 79999984 7999999999999999999987 99999999999999999999999999999999999755 56999999
Q ss_pred EEEeCCEEEEEeCCCCeEEEEECCCCc-e-EEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCCCCc
Q psy13634 79 LTLYKSEIFYSNWDKRSIEKYDKTSHT-R-SVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLN 156 (242)
Q Consensus 79 l~v~~d~lYwtd~~~~~i~~~~k~~g~-~-~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~~~ 156 (242)
|+-+++.+|||||+.++|.++++..++ . ..+..+ -.+.+||....++...+++||+.+||||+||||+.-++
T Consensus 1203 itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~-~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpgqng----- 1276 (1289)
T KOG1214|consen 1203 ITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQ-RSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQNG----- 1276 (1289)
T ss_pred eeeccccceeeccccCceEEeecccccccccccccc-ccceEEEEeccccCCCCCCcccccCCcceeecccCcCC-----
Confidence 999999999999999999999999888 4 444444 56799999888888889999999999999999998887
Q ss_pred eeEecCCCcc
Q psy13634 157 YKCECPTHYT 166 (242)
Q Consensus 157 ~~C~Cp~g~~ 166 (242)
..|.||+..+
T Consensus 1277 avcecpdnvk 1286 (1289)
T KOG1214|consen 1277 AVCECPDNVK 1286 (1289)
T ss_pred ccccCCccce
Confidence 8999998754
No 2
>KOG1215|consensus
Probab=99.97 E-value=4.7e-31 Score=257.47 Aligned_cols=231 Identities=27% Similarity=0.586 Sum_probs=193.0
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCC--ccceEEEeccCCEEEEEeCCCC-cEEEEeccCCceEEEEcCCCCceE
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV--KANSLTVNYDEKRVYYVNLLSS-SIESIDIEGRNKITIVANIEDKPV 77 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~-~I~~~~~dG~~~~~l~~~~~~~p~ 77 (242)
|||+||+ ..++|+|+.|||+.+.+++... +|+||++|..++++||+|.... .|++++++|.+|+++....+.||+
T Consensus 537 ~~wtd~~--~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~ 614 (877)
T KOG1215|consen 537 MFWTDWG--QPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPF 614 (877)
T ss_pred eEEecCC--CCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCce
Confidence 7999998 5779999999999999999985 9999999999999999999998 899999999999845556689999
Q ss_pred EEEEeCCEEEEEeCCCCeEEEEECCCCce-EEEecCCcccccceEEe-ccccc-cccccccCcccCCccccccCCCCCCC
Q psy13634 78 TLTLYKSEIFYSNWDKRSIEKYDKTSHTR-SVIYRSSEKEINDMLIY-HPSRQ-TGWNKCAVANNECDYLCLATPGRGGG 154 (242)
Q Consensus 78 ~l~v~~d~lYwtd~~~~~i~~~~k~~g~~-~~~~~~~~~~p~~i~i~-~~~~q-~~~n~C~~~ng~Cs~lCl~~~~~~~~ 154 (242)
++++|++++||+||....+.+.++..+.. ..+..+ ...+..+.++ +...| ++.|+|+.+||+|+|+|++.|.+
T Consensus 615 ~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~--- 690 (877)
T KOG1215|consen 615 GLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSN-LAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQG--- 690 (877)
T ss_pred EEEEecceeEEeeccccceEeeecccCCcceeeecc-cCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCCC---
Confidence 99999999999999999999998877753 233444 5677777766 44444 59999999999999999999997
Q ss_pred CceeEecCCCcccc--CCcccCCceeEEEeeeceEEEEecCCCCCCCccEecC---------------------------
Q psy13634 155 LNYKCECPTHYTMV--NGTCMAPSSFLIYAQRNILSRLITDPTQCPDSPYEIP--------------------------- 205 (242)
Q Consensus 155 ~~~~C~Cp~g~~l~--~~~C~~~~~fl~~~~~~~i~~~~~~~~~~~~~~~p~~--------------------------- 205 (242)
.+|+||.|+.|. +++|.++..+++++....|..+..+....+...++..
T Consensus 691 --~~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (877)
T KOG1215|consen 691 --STCACPEGYRLSPDGKSCSSPEGYLLITSRTGIPCISLDSELSPDQPLEDGDTIDRLEYWTDVRVGVAAVSSQNCAPG 768 (877)
T ss_pred --CeeeCCCCCeecCCCCeecCcccccccccccccceeecCcccCCCcccCCCcccccceecccccceeeEEEecCCCCc
Confidence 599999999988 8999999999999999999888877544332222211
Q ss_pred ------CCCceeeEEEeCCCCEEEEEECCCCcEEEEeCCC
Q psy13634 206 ------NVKNIKALDYDPVARQIYWIDSKLQAIKRASENA 239 (242)
Q Consensus 206 ------~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~dG 239 (242)
+...+..+.+|...+.|||.......|....++|
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 808 (877)
T KOG1215|consen 769 YDLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDG 808 (877)
T ss_pred cccccccCCCCCCceeehhhcceEEEeecccEEEEEEEee
Confidence 2234456788999999999998888888777766
No 3
>KOG1214|consensus
Probab=99.89 E-value=1.9e-22 Score=185.40 Aligned_cols=183 Identities=15% Similarity=0.344 Sum_probs=146.1
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCC--ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEE
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV--KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVT 78 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~ 78 (242)
+||||. ..+.|.||.|.|.+.++++++. .|.|||||+....+||+|+..++||.+.|||+.|++|+...+-+|.+
T Consensus 1039 vyWtDv---~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~ 1115 (1289)
T KOG1214|consen 1039 VYWTDV---AGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRA 1115 (1289)
T ss_pred EEEeec---CCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcce
Confidence 599998 5799999999999999999986 99999999999999999999999999999999999999999988888
Q ss_pred EEE--eCCEEEEEeCCCC--eEEEEECCCCc-eEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCC
Q psy13634 79 LTL--YKSEIFYSNWDKR--SIEKYDKTSHT-RSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGG 153 (242)
Q Consensus 79 l~v--~~d~lYwtd~~~~--~i~~~~k~~g~-~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~ 153 (242)
|++ +++.|||+||.+. +|.+++++ |+ ++++....+..|.||++.--+ +.||....+..
T Consensus 1116 iv~D~~rgnLYwtDWnRenPkIets~mD-G~NrRilin~DigLPNGLtfdpfs---------------~~LCWvDAGt~- 1178 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMD-GENRRILINTDIGLPNGLTFDPFS---------------KLLCWVDAGTK- 1178 (1289)
T ss_pred EEeecccCceeeccccccCCcceeeccC-CccceEEeecccCCCCCceeCccc---------------ceeeEEecCCc-
Confidence 775 5899999999864 79999976 55 555544338889999866433 24777766552
Q ss_pred CCceeEecCCCccccCCcccCCceeEEEeeeceEEEEecCCCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCCCcEE
Q psy13634 154 GLNYKCECPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233 (242)
Q Consensus 154 ~~~~~C~Cp~g~~l~~~~C~~~~~fl~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~ 233 (242)
...|.=|+| +..+....+|..+++|.-+. +.+||+|+....|-
T Consensus 1179 --rleC~~p~g---------------------------------~gRR~i~~~LqYPF~itsy~--~~fY~TDWk~n~vv 1221 (1289)
T KOG1214|consen 1179 --RLECTLPDG---------------------------------TGRRVIQNNLQYPFSITSYA--DHFYHTDWKRNGVV 1221 (1289)
T ss_pred --ceeEecCCC---------------------------------CcchhhhhcccCceeeeecc--ccceeeccccCceE
Confidence 234544433 12233446788899887664 44999999999998
Q ss_pred EEeCCCc
Q psy13634 234 RASENAT 240 (242)
Q Consensus 234 r~~~dGs 240 (242)
.+..-+.
T Consensus 1222 sv~~~~~ 1228 (1289)
T KOG1214|consen 1222 SVNKHSG 1228 (1289)
T ss_pred Eeecccc
Confidence 8877654
No 4
>KOG1215|consensus
Probab=99.83 E-value=1.1e-19 Score=177.84 Aligned_cols=211 Identities=27% Similarity=0.466 Sum_probs=175.0
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCC--ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEE
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV--KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVT 78 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~ 78 (242)
+||+|++. ..+.|+++++|+..+..+.... +|.|++.|+..+.+|| ++++|+.+++ |+...+.++
T Consensus 253 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~~~~~~~-- 319 (877)
T KOG1215|consen 253 MNCSDATC-EAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILLSKLCHG-- 319 (877)
T ss_pred eEeecccc-CCcceeecCCCCccceEEecCccCCCCcccccccccceee---------eeecccCCce-eeecccCcc--
Confidence 58888862 4589999999999999998876 9999999999999999 8899999998 777666666
Q ss_pred EEEeCCEEEEEeCCCCeEEEEECCCCc-eEEEecCCcccccceEEeccccccccccccCcccCCccccccC-CCCCCCCc
Q psy13634 79 LTLYKSEIFYSNWDKRSIEKYDKTSHT-RSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLAT-PGRGGGLN 156 (242)
Q Consensus 79 l~v~~d~lYwtd~~~~~i~~~~k~~g~-~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~-~~~~~~~~ 156 (242)
||.++....+.++.+-.+. +.+.... .....+..+++....+..++|...||+|+|+|++. |..
T Consensus 320 --------~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~----- 385 (877)
T KOG1215|consen 320 --------YWTDGLNECAERVLKCSHKCPDVSVGP-RCDCMGAKVLPLGARTDSNPCESDNGGCSQLCVPNSPGT----- 385 (877)
T ss_pred --------ccccccccchhhcccccCCCCccccCC-cccCCccceecccccccCCcccccCCccceeccCCCCCc-----
Confidence 6999988877777766665 4444333 34455666665555557899999999999999976 544
Q ss_pred eeEecCCCccccCCcccC---CceeEEEeeeceEEEEecCCCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCCCcEE
Q psy13634 157 YKCECPTHYTMVNGTCMA---PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233 (242)
Q Consensus 157 ~~C~Cp~g~~l~~~~C~~---~~~fl~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~ 233 (242)
+.|.|+.||.+....|.. ++.||+++.+..|+++.++.. +...|+.++.++.++|+|+.+++|||+|.....|.
T Consensus 386 ~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ir~~~~~~~---~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~ 462 (877)
T KOG1215|consen 386 FKCACSPGYELRLDKCEASDQPEAFLLFSNRHDIRRISLDCS---DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKIC 462 (877)
T ss_pred eeEecCCCcEeccCCceecCCCCcEEEEecCccceecccCCC---cceEEccCCccceEEEEEecCCEEEEEeccCCeEe
Confidence 999999999999222643 678999999999999999864 67889999899999999999999999999999999
Q ss_pred EEeCCCcc
Q psy13634 234 RASENATR 241 (242)
Q Consensus 234 r~~~dGs~ 241 (242)
+++.+|..
T Consensus 463 ~~~~~~~~ 470 (877)
T KOG1215|consen 463 RASQDGSS 470 (877)
T ss_pred eeccCCCc
Confidence 99999875
No 5
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.32 E-value=2.4e-12 Score=78.37 Aligned_cols=38 Identities=29% Similarity=0.795 Sum_probs=34.8
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCC--ccceEEEec
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV--KANSLTVNY 40 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~ 40 (242)
|||||++ ..++|++++|||+++++|++.. +|.|||||+
T Consensus 3 iYWtD~~--~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 3 IYWTDWS--QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEETT--TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEECC--CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 7999997 4479999999999999999986 999999995
No 6
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=99.26 E-value=2.5e-12 Score=75.02 Aligned_cols=34 Identities=44% Similarity=1.228 Sum_probs=29.4
Q ss_pred ccCcccCCccccccCCCCCCCCceeEecCCCcccc--CCcc
Q psy13634 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV--NGTC 172 (242)
Q Consensus 134 C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~--~~~C 172 (242)
|+.+||+|+|+|++.|++ ++|+||.||.|. +++|
T Consensus 1 C~~~NGgC~h~C~~~~g~-----~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGS-----YRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTS-----EEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCc-----eEeECCCCCEECcCCCCC
Confidence 778899999999999987 999999999999 7776
No 7
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.21 E-value=6.9e-11 Score=71.87 Aligned_cols=40 Identities=20% Similarity=0.481 Sum_probs=38.3
Q ss_pred CEEEEEeCCCC-cEEEEeccCCceEEEEcCCCCceEEEEEe
Q psy13634 43 KRVYYVNLLSS-SIESIDIEGRNKITIVANIEDKPVTLTLY 82 (242)
Q Consensus 43 ~rLYW~D~~~~-~I~~~~~dG~~~~~l~~~~~~~p~~l~v~ 82 (242)
++|||+|...+ .|+++++||+++++++.+.+.+|.||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 58999999999 99999999999999999999999999986
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=8e-08 Score=80.63 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=122.0
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeCCccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcC-----CCCc
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVAN-----IEDK 75 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~~~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~-----~~~~ 75 (242)
|||+|. ...+|.|.+.++...+++-.. .|.|++++...++||.++... +...++.....+++... ....
T Consensus 14 l~~~D~---~~~~i~~~~~~~~~~~~~~~~-~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~~~~~~~~~~~~~ 87 (246)
T PF08450_consen 14 LYWVDI---PGGRIYRVDPDTGEVEVIDLP-GPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVLADLPDGGVPFNR 87 (246)
T ss_dssp EEEEET---TTTEEEEEETTTTEEEEEESS-SEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred EEEEEc---CCCEEEEEECCCCeEEEEecC-CCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEEeeccCCCcccCC
Confidence 699997 478999999998765553333 699999997789999999754 44448776666666653 3567
Q ss_pred eEEEEEeC-CEEEEEeCCC--------CeEEEEECCCCceEEEecCCcccccceEEeccccccccccccCcccCCccccc
Q psy13634 76 PVTLTLYK-SEIFYSNWDK--------RSIEKYDKTSHTRSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCL 146 (242)
Q Consensus 76 p~~l~v~~-d~lYwtd~~~--------~~i~~~~k~~g~~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl 146 (242)
|..+++.. +.||+++... ++|++++.. ++.+.+... +..|.||.+-..
T Consensus 88 ~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~d--------------------- 144 (246)
T PF08450_consen 88 PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPD--------------------- 144 (246)
T ss_dssp EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETT---------------------
T ss_pred CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCc---------------------
Confidence 88999874 6799999654 569999876 554444445 666777764432
Q ss_pred cCCCCCCCCceeEecCCCccccCCcccCCceeEEEee--eceEEEEecCCCCC--C--CccEecCCC-CceeeEEEeCCC
Q psy13634 147 ATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQ--RNILSRLITDPTQC--P--DSPYEIPNV-KNIKALDYDPVA 219 (242)
Q Consensus 147 ~~~~~~~~~~~~C~Cp~g~~l~~~~C~~~~~fl~~~~--~~~i~~~~~~~~~~--~--~~~~p~~~~-~~~~~l~~d~~~ 219 (242)
++.|+++. ...|.++.++.... . .....+... ..+-++.+|. +
T Consensus 145 -----------------------------g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~ 194 (246)
T PF08450_consen 145 -----------------------------GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-D 194 (246)
T ss_dssp -----------------------------SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-T
T ss_pred -----------------------------chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-C
Confidence 11333333 35677777764322 1 111223333 2477899998 5
Q ss_pred CEEEEEECCCCcEEEEeCCCc
Q psy13634 220 RQIYWIDSKLQAIKRASENAT 240 (242)
Q Consensus 220 ~~iYw~d~~~~~I~r~~~dGs 240 (242)
++||-++...+.|.+...+|.
T Consensus 195 G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp S-EEEEEETTTEEEEEETTSC
T ss_pred CCEEEEEcCCCEEEEECCCcc
Confidence 689999999999999998886
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=8.7e-07 Score=88.64 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=81.4
Q ss_pred CEEeecCCCCCCcEEEEecCCCCcEEEEeC--------------C-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCce
Q psy13634 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--------------V-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNK 65 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDGs~~~~lv~~--------------~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~ 65 (242)
||.+|.+ +.+|.+.+++|.....+-.. . .|.||++|...+.||++|.....|..+++.+...
T Consensus 582 lyVaDs~---n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V 658 (1057)
T PLN02919 582 LFISDSN---HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV 658 (1057)
T ss_pred EEEEECC---CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence 5888874 68999999998754444331 1 6999999998899999999999999999987666
Q ss_pred EEEEcC----------------CCCceEEEEEe--CCEEEEEeCCCCeEEEEECCCCc
Q psy13634 66 ITIVAN----------------IEDKPVTLTLY--KSEIFYSNWDKRSIEKYDKTSHT 105 (242)
Q Consensus 66 ~~l~~~----------------~~~~p~~l~v~--~d~lYwtd~~~~~i~~~~k~~g~ 105 (242)
+++... .+.+|.+|++. ++.||++|...+.|...+..+|.
T Consensus 659 ~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 659 RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 655321 14689999987 57999999999999999977665
No 10
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.82 E-value=1.2e-08 Score=61.75 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=32.6
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCce
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNK 65 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~ 65 (242)
.|+||++|+.+++|||+|.....|++++++|+++
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999999999999999999999874
No 11
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=1.3e-06 Score=73.19 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=101.2
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEe--CCEEEEEeCCCCeEEEEECCCCc-eEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLY--KSEIFYSNWDKRSIEKYDKTSHT-RSV 108 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~--~d~lYwtd~~~~~i~~~~k~~g~-~~~ 108 (242)
+|.|.+.|..+++|||+|...+.|.+++.++...+++. ...|.|+++. ++.+|.++.... ...+..+++ ...
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---~~~~~G~~~~~~~g~l~v~~~~~~--~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---LPGPNGMAFDRPDGRLYVADSGGI--AVVDPDTGKVTVL 75 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---SSSEEEEEEECTTSEEEEEETTCE--EEEETTTTEEEEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---cCCCceEEEEccCCEEEEEEcCce--EEEecCCCcEEEE
Confidence 47899999999999999999999999999988776433 2349999988 689999987544 334777776 333
Q ss_pred Eec--C--CcccccceEEeccccccccccccCcccCCccccccCCCCCCCCceeEecCCCccccCCcccCCceeEEEeee
Q psy13634 109 IYR--S--SEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQR 184 (242)
Q Consensus 109 ~~~--~--~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~~~~C~~~~~fl~~~~~ 184 (242)
+.. . .+..|+++.+... +. ..+..+...... ....
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~-------------------------G~----ly~t~~~~~~~~-----~~~~------- 114 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPD-------------------------GN----LYVTDSGGGGAS-----GIDP------- 114 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TT-------------------------S-----EEEEEECCBCTT-----CGGS-------
T ss_pred eeccCCCcccCCCceEEEcCC-------------------------CC----EEEEecCCCccc-----cccc-------
Confidence 322 1 1233444433211 10 111111110000 0000
Q ss_pred ceEEEEecCCCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCCCcEEEEeCCC
Q psy13634 185 NILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENA 239 (242)
Q Consensus 185 ~~i~~~~~~~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~dG 239 (242)
..+.++..+. .......++..+-+|.+++.++.+|++|+..+.|.|..++.
T Consensus 115 g~v~~~~~~~----~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 115 GSVYRIDPDG----KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEEEEEETTS----EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred cceEEECCCC----eEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 3455555541 23334456777889999999999999999999999999863
No 12
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=8.5e-06 Score=81.66 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=64.8
Q ss_pred eCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcC-------------CCCceEEEEEe--CCEEEEEeCC
Q psy13634 29 HKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVAN-------------IEDKPVTLTLY--KSEIFYSNWD 92 (242)
Q Consensus 29 ~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~-------------~~~~p~~l~v~--~d~lYwtd~~ 92 (242)
+.. .|.++++|..+++||++|....+|..++.+|.-..++... .+..|.||++. ++.||++|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 344 8999999999999999999999999999998755443321 14579999997 4689999999
Q ss_pred CCeEEEEECCCCceEEE
Q psy13634 93 KRSIEKYDKTSHTRSVI 109 (242)
Q Consensus 93 ~~~i~~~~k~~g~~~~~ 109 (242)
.+.|.+++..++..+++
T Consensus 645 n~~Ir~id~~~~~V~tl 661 (1057)
T PLN02919 645 NHALREIDFVNETVRTL 661 (1057)
T ss_pred CceEEEEecCCCEEEEE
Confidence 99999999776654444
No 13
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.59 E-value=1.5e-07 Score=56.91 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred cCCCCceeeEEEeCCCCEEEEEECCCCcEEEEeCCCcc
Q psy13634 204 IPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENATR 241 (242)
Q Consensus 204 ~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~dGs~ 241 (242)
..++..+.+|++|+.+++|||+|...+.|+|+++||++
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 45677788899999999999999999999999999986
No 14
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00035 Score=60.75 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=70.3
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEecc---CC--ceE--EEEcCCCCceEEEEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIE---GR--NKI--TIVANIEDKPVTLTL 81 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~d---G~--~~~--~l~~~~~~~p~~l~v 81 (242)
..+.++|.+.+|...+.+.... .||||++++.++.||++|....+|.+++++ |. +++ +.....-..|=|+++
T Consensus 141 ~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 141 PTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred CcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence 3457999999777666665556 999999999999999999999999999998 31 222 222222368999999
Q ss_pred eCCEEEEE--eCCCCeEEEEECCCCc
Q psy13634 82 YKSEIFYS--NWDKRSIEKYDKTSHT 105 (242)
Q Consensus 82 ~~d~lYwt--d~~~~~i~~~~k~~g~ 105 (242)
..+-.||. -|....|.+.+++ |+
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-Cc
Confidence 97666663 3444478888877 65
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.57 E-value=0.041 Score=48.58 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=99.6
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCce-----EEEEcCCCCceEEEEEeC--CEEEEEeCCCCeEEEEECC--
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNK-----ITIVANIEDKPVTLTLYK--SEIFYSNWDKRSIEKYDKT-- 102 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~-----~~l~~~~~~~p~~l~v~~--d~lYwtd~~~~~i~~~~k~-- 102 (242)
.|+.+.+++..+.||-+|.+.++|...+++.... ..+-...-..|..|++.. .++|.....++.|...+..
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 7899999999999999999999999999987652 112112236799999875 5999999888887766644
Q ss_pred CCceEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCCCCceeEecCCCccccCCcccCCceeEEEe
Q psy13634 103 SHTRSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYA 182 (242)
Q Consensus 103 ~g~~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~~~~C~~~~~fl~~~ 182 (242)
+|..+.+..- ...|.+. .+. ..+++|.+ .| ..+||+++
T Consensus 225 ~g~~~~~~~~-~~~~~~~--------~~~-------~~~~~i~i--------------sp------------dg~~lyvs 262 (345)
T PF10282_consen 225 DGSLTEIQTI-STLPEGF--------TGE-------NAPAEIAI--------------SP------------DGRFLYVS 262 (345)
T ss_dssp TTEEEEEEEE-ESCETTS--------CSS-------SSEEEEEE---------------T------------TSSEEEEE
T ss_pred CCceeEEEEe-eeccccc--------ccc-------CCceeEEE--------------ec------------CCCEEEEE
Confidence 3332222111 0000000 000 02222222 22 23488888
Q ss_pred eec--eEEEEecCCCCCC--C-ccEecCCCCceeeEEEeCCCCEEEEEECCCCcEEEEeCC
Q psy13634 183 QRN--ILSRLITDPTQCP--D-SPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASEN 238 (242)
Q Consensus 183 ~~~--~i~~~~~~~~~~~--~-~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~d 238 (242)
++. .|..+.++..... . ..++.. -..|+.+.+|+..++||-+....+.|..-++|
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 864 5777777543211 1 123332 34589999999999999999888888866654
No 16
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.28 E-value=0.032 Score=49.76 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=48.0
Q ss_pred ccceEEEeccCCEEEEEeCC-----------C-CcEEEEec---cCC-ceEEEEcCCCCceEEEEEeCCEEEEEeCCCCe
Q psy13634 32 KANSLTVNYDEKRVYYVNLL-----------S-SSIESIDI---EGR-NKITIVANIEDKPVTLTLYKSEIFYSNWDKRS 95 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~-----------~-~~I~~~~~---dG~-~~~~l~~~~~~~p~~l~v~~d~lYwtd~~~~~ 95 (242)
.|.+|++|. .++||-++.. . ++|....- ||. +..+++.+.+..|.+|++..+-||.++. ..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~--~~ 91 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATP--PD 91 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCC--Ce
Confidence 899999997 4899999842 2 36776653 343 2345666778899999998666999863 46
Q ss_pred EEEEE
Q psy13634 96 IEKYD 100 (242)
Q Consensus 96 i~~~~ 100 (242)
|.++.
T Consensus 92 i~~~~ 96 (367)
T TIGR02604 92 ILFLR 96 (367)
T ss_pred EEEEe
Confidence 77774
No 17
>KOG4499|consensus
Probab=97.21 E-value=0.0048 Score=51.15 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=74.7
Q ss_pred cEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccC-----CceEEEEcCC------CCceEEEE
Q psy13634 13 TIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEG-----RNKITIVANI------EDKPVTLT 80 (242)
Q Consensus 13 ~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG-----~~~~~l~~~~------~~~p~~l~ 80 (242)
.-.++.+-|-....+.+.. -||||+-|...++.|++|+..-.|...++|- +||++++.-. -.-|-|++
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ 218 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT 218 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce
Confidence 3455566666677777777 9999999999999999999988898888652 5777776421 24577888
Q ss_pred Ee-CCEEEEEeCCCCeEEEEECCCCc
Q psy13634 81 LY-KSEIFYSNWDKRSIEKYDKTSHT 105 (242)
Q Consensus 81 v~-~d~lYwtd~~~~~i~~~~k~~g~ 105 (242)
+. ++.||-+-|+.++|++++..+|+
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCc
Confidence 86 58999999999999999999998
No 18
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.20 E-value=0.00023 Score=42.98 Aligned_cols=37 Identities=35% Similarity=0.911 Sum_probs=29.8
Q ss_pred cccccCcccCCc--cccccCCCCCCCCceeEecCCCcccc--CCcc
Q psy13634 131 WNKCAVANNECD--YLCLATPGRGGGLNYKCECPTHYTMV--NGTC 172 (242)
Q Consensus 131 ~n~C~~~ng~Cs--~lCl~~~~~~~~~~~~C~Cp~g~~l~--~~~C 172 (242)
.|+|......|. +.|+.+.++ |+|.|+.||.+. +.+|
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gs-----y~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGS-----YSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTE-----EEEEESTTEEECTTSSEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCC-----EEeeCCCCcEECCCCCcC
Confidence 367887777886 799999998 999999999855 5444
No 19
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.15 E-value=0.0034 Score=44.34 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=49.2
Q ss_pred ceEEEeccCCEEEEEeCCC-----------------CcEEEEeccCCceEEEEcCCCCceEEEEEe--CCEEEEEeCCCC
Q psy13634 34 NSLTVNYDEKRVYYVNLLS-----------------SSIESIDIEGRNKITIVANIEDKPVTLTLY--KSEIFYSNWDKR 94 (242)
Q Consensus 34 ~glaiD~~~~rLYW~D~~~-----------------~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~--~d~lYwtd~~~~ 94 (242)
++|+|+..++.|||+|+.. +++-+.|......++++. ++..|-|+++. |++|+.++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Confidence 5789999889999999853 678888887777665554 58999999986 569999998888
Q ss_pred eEEEEE
Q psy13634 95 SIEKYD 100 (242)
Q Consensus 95 ~i~~~~ 100 (242)
+|.|.-
T Consensus 80 Ri~ryw 85 (89)
T PF03088_consen 80 RILRYW 85 (89)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888765
No 20
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.09 E-value=0.18 Score=44.45 Aligned_cols=191 Identities=16% Similarity=0.245 Sum_probs=113.7
Q ss_pred CCCcEEEEecCCCCcE-EEEe---CC-ccceEEEeccCCEEEEEeC---CCCcEEEEeccCC-ceEEEEcC---CCCceE
Q psy13634 10 NGGTIERSALDGTQRS-VLLH---KV-KANSLTVNYDEKRVYYVNL---LSSSIESIDIEGR-NKITIVAN---IEDKPV 77 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~-~lv~---~~-~P~glaiD~~~~rLYW~D~---~~~~I~~~~~dG~-~~~~l~~~---~~~~p~ 77 (242)
....|.+..+|.+..+ .++. .. .|.-|++|+..++||-+.. ....|.+..++.. ..-+++.. .-..|-
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 4578999999765543 2233 23 9999999999999999988 4678999988875 33223322 236888
Q ss_pred EEEE--eCCEEEEEeCCCCeEEEEECCC-Cc-eEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCC
Q psy13634 78 TLTL--YKSEIFYSNWDKRSIEKYDKTS-HT-RSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGG 153 (242)
Q Consensus 78 ~l~v--~~d~lYwtd~~~~~i~~~~k~~-g~-~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~ 153 (242)
.|++ .+.+||.+....+.|...+... |. ...... ... .+- --++.+|.+ .-.|-+...|.
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~--~~~-~g~-g~~~~rq~~---------~h~H~v~~~pd--- 154 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT--VRH-EGS-GPNPDRQEG---------PHPHQVVFSPD--- 154 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE--EES-EEE-ESSTTTTSS---------TCEEEEEE-TT---
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee--ccc-CCC-CCccccccc---------ccceeEEECCC---
Confidence 8888 5789999998888876665433 44 222110 000 000 001112211 11222233333
Q ss_pred CCceeEecCCCccccCCcccCCceeEEEeee--ceEEEEecCCCC--CC-CccEecCCCCceeeEEEeCCCCEEEEEECC
Q psy13634 154 GLNYKCECPTHYTMVNGTCMAPSSFLIYAQR--NILSRLITDPTQ--CP-DSPYEIPNVKNIKALDYDPVARQIYWIDSK 228 (242)
Q Consensus 154 ~~~~~C~Cp~g~~l~~~~C~~~~~fl~~~~~--~~i~~~~~~~~~--~~-~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~ 228 (242)
.+|+++++. ..|..+.++... .. ...+.++.-..|+.+.|++..+++|.+...
T Consensus 155 ----------------------g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 155 ----------------------GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp ----------------------SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT
T ss_pred ----------------------CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC
Confidence 246666553 456666666432 11 112234444568999999999999999988
Q ss_pred CCcEEEEeCC
Q psy13634 229 LQAIKRASEN 238 (242)
Q Consensus 229 ~~~I~r~~~d 238 (242)
.++|....++
T Consensus 213 s~~v~v~~~~ 222 (345)
T PF10282_consen 213 SNTVSVFDYD 222 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEeec
Confidence 8888877765
No 21
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.94 E-value=0.00073 Score=35.49 Aligned_cols=19 Identities=32% Similarity=0.955 Sum_probs=17.0
Q ss_pred eeEecCCCcccc--CCcccCC
Q psy13634 157 YKCECPTHYTMV--NGTCMAP 175 (242)
Q Consensus 157 ~~C~Cp~g~~l~--~~~C~~~ 175 (242)
|+|.|+.||.|. +++|...
T Consensus 2 y~C~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 2 YTCSCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred EEeeCCCCCcCCCCCCccccC
Confidence 899999999998 8899764
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.11 Score=45.23 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=37.6
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEeCC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYKS 84 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d 84 (242)
+..|-+-|...+.|||+|....+|.+.+......+++... -..+.++.+..+
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p-~~~~~~~~~d~~ 77 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP-GGFSSGALIDAG 77 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC-CCcccceeecCC
Confidence 8999999999999999999999999999974444433322 223444445443
No 23
>KOG1520|consensus
Probab=96.80 E-value=0.0046 Score=54.55 Aligned_cols=61 Identities=11% Similarity=0.247 Sum_probs=44.9
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCce----EEEEEe-CCEEEEEeCCC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKP----VTLTLY-KSEIFYSNWDK 93 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p----~~l~v~-~d~lYwtd~~~ 93 (242)
+|-||++|..++.||-+|++.+ +..++..|..-+.+..+....| -++++. ++.+||||..+
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSS 181 (376)
T ss_pred CcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccc
Confidence 9999999999999999999875 6778888877553333322333 345554 68999999754
No 24
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.79 E-value=0.00076 Score=39.25 Aligned_cols=34 Identities=32% Similarity=0.695 Sum_probs=25.4
Q ss_pred ccCcccCCcc--ccccCCCCCCCCceeEecCCCccccCCcc
Q psy13634 134 CAVANNECDY--LCLATPGRGGGLNYKCECPTHYTMVNGTC 172 (242)
Q Consensus 134 C~~~ng~Cs~--lCl~~~~~~~~~~~~C~Cp~g~~l~~~~C 172 (242)
|..+|++|.. .|..+++. ++|.|+.||.-.|..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~-----~~C~C~~Gy~GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGS-----YTCTCKPGYEGDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTS-----EEEEE-CEEECCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCC-----EEeECCCCCccCCcCC
Confidence 6778899963 79999986 9999999998766555
No 25
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.73 E-value=0.44 Score=43.38 Aligned_cols=219 Identities=9% Similarity=0.022 Sum_probs=113.7
Q ss_pred CCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeC--CCCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNL--LSSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEI 86 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~--~~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~l 86 (242)
..+|+.++.||.+++.|.... .....+..+..++|.|+.. +...|...++++...+.+.... .......+-.+.+|
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 468999999999999987766 6678888888889988743 3457888888877666444321 11122344457789
Q ss_pred EEEeCCCC--eEEEEECCCCceEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCCCCceeEecCCC
Q psy13634 87 FYSNWDKR--SIEKYDKTSHTRSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTH 164 (242)
Q Consensus 87 Ywtd~~~~--~i~~~~k~~g~~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g 164 (242)
+++....+ .|+.++..+++.+.+... -...... .+++..+.. ......++..++.+....+. ...-.=..+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~-~wSPDG~~I--~f~s~~~g~~~Iy~~d~~~g---~~~~lt~~~ 330 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEP-TWFPDSQNL--AYTSDQAGRPQVYKVNINGG---APQRITWEG 330 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCce-EECCCCCEE--EEEeCCCCCceEEEEECCCC---CeEEeecCC
Confidence 98755433 588888777663333222 1111111 122211100 00001123344444322211 011000000
Q ss_pred ccccCCcc-cCCceeEEEeeec----eEEEEecCCCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCC--CcEEEEeC
Q psy13634 165 YTMVNGTC-MAPSSFLIYAQRN----ILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKL--QAIKRASE 237 (242)
Q Consensus 165 ~~l~~~~C-~~~~~fl~~~~~~----~i~~~~~~~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~--~~I~r~~~ 237 (242)
.. ...-+ .+...+|+++... .|..+.++... ...+..........+.|..++|+++.... ..++...+
T Consensus 331 ~~-~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 331 SQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CC-ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 00 00111 2234577775532 35556655321 11222111223456788899999987643 34777788
Q ss_pred CCcc
Q psy13634 238 NATR 241 (242)
Q Consensus 238 dGs~ 241 (242)
||..
T Consensus 406 ~G~~ 409 (429)
T PRK03629 406 DGRF 409 (429)
T ss_pred CCCC
Confidence 8864
No 26
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.70 E-value=0.0012 Score=54.73 Aligned_cols=34 Identities=32% Similarity=0.876 Sum_probs=30.3
Q ss_pred ccccccCcccCCccccccCCCCCCCCceeEecCCCcccc
Q psy13634 130 GWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 130 ~~n~C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
..++|...++.|.|.|...+++ |.|.|+.||.+.
T Consensus 186 ~~~~C~~~~~~c~~~C~~~~g~-----~~c~c~~g~~~~ 219 (224)
T cd01475 186 VPDLCATLSHVCQQVCISTPGS-----YLCACTEGYALL 219 (224)
T ss_pred CchhhcCCCCCccceEEcCCCC-----EEeECCCCccCC
Confidence 4578888888999999998887 999999999886
No 27
>KOG4659|consensus
Probab=96.67 E-value=0.23 Score=50.29 Aligned_cols=189 Identities=13% Similarity=0.168 Sum_probs=116.2
Q ss_pred cEEEEecCCCCcEEEE-------eCC---ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcC--CCCceEEEE
Q psy13634 13 TIERSALDGTQRSVLL-------HKV---KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVAN--IEDKPVTLT 80 (242)
Q Consensus 13 ~I~ra~mDGs~~~~lv-------~~~---~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~--~~~~p~~l~ 80 (242)
-|--+-.||-.|-+=. ++. .|.+||.-+ .+-||-.|. ..|.++..||.-+.+|--+ ...|-+-||
T Consensus 337 vitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~A 413 (1899)
T KOG4659|consen 337 VITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIA 413 (1899)
T ss_pred eEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEE
Confidence 3444455676654432 222 799999876 688999885 6799999999988754332 235666666
Q ss_pred E--eCCEEEEEeCCCCeEEEEECCCCceEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCCCCcee
Q psy13634 81 L--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYK 158 (242)
Q Consensus 81 v--~~d~lYwtd~~~~~i~~~~k~~g~~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~~~~~ 158 (242)
+ ..+.||-+|..++.|+|+.-..++ -... ...+.. |--..|||.-.
T Consensus 414 vsPvdgtlyvSdp~s~qv~rv~sl~~~--d~~~-------N~evva---------------G~Ge~Clp~de-------- 461 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLSKQVWRVSSLEPQ--DSRN-------NYEVVA---------------GDGEVCLPADE-------- 461 (1899)
T ss_pred ecCcCceEEecCCCcceEEEeccCCcc--cccc-------CeeEEe---------------ccCcCcccccc--------
Confidence 5 579999999999999999754332 0000 111111 11123554322
Q ss_pred EecCCCccccCCcccCC-------ceeEEEeeeceEEEEecCCC------CCCCccEecC----------CCCceeeEEE
Q psy13634 159 CECPTHYTMVNGTCMAP-------SSFLIYAQRNILSRLITDPT------QCPDSPYEIP----------NVKNIKALDY 215 (242)
Q Consensus 159 C~Cp~g~~l~~~~C~~~-------~~fl~~~~~~~i~~~~~~~~------~~~~~~~p~~----------~~~~~~~l~~ 215 (242)
+|-+|-..++.+=..| ..+|.|++...|+.+.-++- ..++..-|++ .++=|..|++
T Consensus 462 -sCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV 540 (1899)
T KOG4659|consen 462 -SCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAV 540 (1899)
T ss_pred -ccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceee
Confidence 2666644333222222 35999999999998765432 1111122221 3445889999
Q ss_pred eCCCCEEEEEECCCCcEEEEeCCC
Q psy13634 216 DPVARQIYWIDSKLQAIKRASENA 239 (242)
Q Consensus 216 d~~~~~iYw~d~~~~~I~r~~~dG 239 (242)
||.++.+|-.|. +.|.|...++
T Consensus 541 ~Pmdnsl~Vld~--nvvlrit~~~ 562 (1899)
T KOG4659|consen 541 DPMDNSLLVLDT--NVVLRITVVH 562 (1899)
T ss_pred cCCCCeEEEeec--ceEEEEccCc
Confidence 999999999994 4777766554
No 28
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.44 Score=41.73 Aligned_cols=193 Identities=17% Similarity=0.240 Sum_probs=111.0
Q ss_pred CCCcEEEEecCCCCc-EEE---EeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCC-ceEEEEcCC---CCceEE
Q psy13634 10 NGGTIERSALDGTQR-SVL---LHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGR-NKITIVANI---EDKPVT 78 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~-~~l---v~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~-~~~~l~~~~---~~~p~~ 78 (242)
....|++.+||.... ..+ +... .|+-|++++..++||=+... ...|.+..+|+. ++-+++... -..|--
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467899999995443 233 3334 99999999999999999776 789999999986 565565443 245566
Q ss_pred EEEeC--CEEEEEeCCCCeEEEEEC-CCCc-eEEEecCCcccccceEEeccccccccccccCcccCCccccccCCCCCCC
Q psy13634 79 LTLYK--SEIFYSNWDKRSIEKYDK-TSHT-RSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGG 154 (242)
Q Consensus 79 l~v~~--d~lYwtd~~~~~i~~~~k-~~g~-~~~~~~~~~~~p~~i~i~~~~~q~~~n~C~~~ng~Cs~lCl~~~~~~~~ 154 (242)
+++.+ .+||-+....+.|..... ..|. ..++.. +.|.-. +.++-+.. .=.|.-..+|.+.
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~----------~~h~g~--~p~~rQ~~--~h~H~a~~tP~~~-- 157 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV----------VKHTGS--GPHERQES--PHVHSANFTPDGR-- 157 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceee----------eecCCC--CCCccccC--CccceeeeCCCCC--
Confidence 77765 578888777776644332 2244 222111 111111 11111111 1123333455554
Q ss_pred CceeEecCCCccccCCcccCCceeEEEeeeceEEEEecC-CCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCCCcEE
Q psy13634 155 LNYKCECPTHYTMVNGTCMAPSSFLIYAQRNILSRLITD-PTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233 (242)
Q Consensus 155 ~~~~C~Cp~g~~l~~~~C~~~~~fl~~~~~~~i~~~~~~-~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~ 233 (242)
+.|.|.-|- +.+.+|. ++ +.-.+....-+.-=..++-|.|.|..+..|-+---+++|.
T Consensus 158 --~l~v~DLG~----------Dri~~y~---------~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 158 --YLVVPDLGT----------DRIFLYD---------LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred --EEEEeecCC----------ceEEEEE---------cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEE
Confidence 778776652 2222222 22 1100000001111234778999999999999987777777
Q ss_pred EEeCCC
Q psy13634 234 RASENA 239 (242)
Q Consensus 234 r~~~dG 239 (242)
-...|+
T Consensus 217 v~~y~~ 222 (346)
T COG2706 217 VLEYNP 222 (346)
T ss_pred EEEEcC
Confidence 666654
No 29
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.46 E-value=0.06 Score=47.37 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCCcEEEEecCCC-------------CcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEec--cCCce--------
Q psy13634 10 NGGTIERSALDGT-------------QRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDI--EGRNK-------- 65 (242)
Q Consensus 10 ~~~~I~ra~mDGs-------------~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~--dG~~~-------- 65 (242)
...+|.|.+.||+ ..++.-... .|.+|++|+.+++||-+|.+.+..+.++. .|.+.
T Consensus 146 ~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~ 225 (331)
T PF07995_consen 146 LRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGG 225 (331)
T ss_dssp STTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSS
T ss_pred ccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCC
Confidence 4578999999998 455555556 89999999999999999988766666654 23321
Q ss_pred ------E-------------EEEcCCCCceEEEEEe--------CCEEEEEeCCCCeEEEEECCCC
Q psy13634 66 ------I-------------TIVANIEDKPVTLTLY--------KSEIFYSNWDKRSIEKYDKTSH 104 (242)
Q Consensus 66 ------~-------------~l~~~~~~~p~~l~v~--------~d~lYwtd~~~~~i~~~~k~~g 104 (242)
. .+....-..|.|++++ .+.++++++..+.|+++....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~ 291 (331)
T PF07995_consen 226 PKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED 291 (331)
T ss_dssp CSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred CCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence 0 0000112468899988 5789999999999999987544
No 30
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.38 E-value=0.0044 Score=35.32 Aligned_cols=29 Identities=45% Similarity=1.084 Sum_probs=22.6
Q ss_pred ccCcccCCcc-ccccCCCCCCCCceeEecCCCcccc
Q psy13634 134 CAVANNECDY-LCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 134 C~~~ng~Cs~-lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
|..+ +.|.+ .|+..+++ +.|.|+.||.+.
T Consensus 2 C~~~-~~C~~~~C~~~~~~-----~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASG-GPCSNGTCINTPGS-----YTCSCPPGYTGD 31 (35)
T ss_pred CCCc-CCCCCCEEECCCCC-----eEeECCCCCccC
Confidence 5543 57877 89988666 999999999753
No 31
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.16 E-value=0.045 Score=48.81 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCcEEEE-ecCCC-----CcEEEEeCC---------ccceEEEeccCCEEEEEeCCC-------------------CcEE
Q psy13634 11 GGTIERS-ALDGT-----QRSVLLHKV---------KANSLTVNYDEKRVYYVNLLS-------------------SSIE 56 (242)
Q Consensus 11 ~~~I~ra-~mDGs-----~~~~lv~~~---------~P~glaiD~~~~rLYW~D~~~-------------------~~I~ 56 (242)
.++|.|. +.||. .+++|++.. .|++|++++ .++||+++... ..|.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 4567766 44442 566676642 388999998 58999988731 4699
Q ss_pred EEeccCCceEEEEcCCCCceEEEEEe-CCEEEEEeCCCCeEEEEE
Q psy13634 57 SIDIEGRNKITIVANIEDKPVTLTLY-KSEIFYSNWDKRSIEKYD 100 (242)
Q Consensus 57 ~~~~dG~~~~~l~~~~~~~p~~l~v~-~d~lYwtd~~~~~i~~~~ 100 (242)
+++.||+..+ ++...+++|++|++. .+.+|.+|.......+++
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRVT 211 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCCCceeEEc
Confidence 9999999887 455668999999996 477899987655555554
No 32
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.16 E-value=0.58 Score=41.15 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=40.5
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcC------CCCceEEEEEeC-----CEEEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVAN------IEDKPVTLTLYK-----SEIFYS 89 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~------~~~~p~~l~v~~-----d~lYwt 89 (242)
.|.+|++.+. ++||.++. .++|..++.+|.....+... ...-+++|+++. ++||..
T Consensus 3 ~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred CceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence 5999999986 89999997 89999999888873333221 236789999987 455544
No 33
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.09 E-value=0.88 Score=41.84 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred cCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEE------cC-CCCceEEEEEeCCE
Q psy13634 19 LDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIV------AN-IEDKPVTLTLYKSE 85 (242)
Q Consensus 19 mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~------~~-~~~~p~~l~v~~d~ 85 (242)
-.|-..+++.+.. .|.+|++.+ .++||.++...++|..++-++.....+. .. ...-+++|+++-++
T Consensus 17 p~~f~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 17 SENFDKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCcEEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4444556666666 999999988 5799999987788998876554433222 11 23557999997553
No 34
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.04 E-value=0.009 Score=34.68 Aligned_cols=34 Identities=44% Similarity=1.098 Sum_probs=24.3
Q ss_pred ccccCcccCCcc--ccccCCCCCCCCceeEecCCCccccCCcc
Q psy13634 132 NKCAVANNECDY--LCLATPGRGGGLNYKCECPTHYTMVNGTC 172 (242)
Q Consensus 132 n~C~~~ng~Cs~--lCl~~~~~~~~~~~~C~Cp~g~~l~~~~C 172 (242)
++|... ..|.+ .|+..+++ +.|.|+.||. .+..|
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~g~-----~~C~C~~g~~-~g~~C 38 (39)
T smart00179 3 DECASG-NPCQNGGTCVNTVGS-----YRCECPPGYT-DGRNC 38 (39)
T ss_pred ccCcCC-CCcCCCCEeECCCCC-----eEeECCCCCc-cCCcC
Confidence 456542 35765 89988876 9999999987 54555
No 35
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.95 E-value=0.99 Score=39.20 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCCcEEEE---eCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcC-C-CCceEEEEEe--
Q psy13634 11 GGTIERSALDGTQRSVLL---HKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVAN-I-EDKPVTLTLY-- 82 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv---~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~-~-~~~p~~l~v~-- 82 (242)
...|..-+++-.....++ ... .|+.|++++..+.||.+......|...++++.+.-+++.. . ..+|..|++.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ 90 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC
Confidence 466777777522222222 223 8999999999999999987778898888874433222221 1 2478888876
Q ss_pred CCEEEEEeCCCCeEEEEE
Q psy13634 83 KSEIFYSNWDKRSIEKYD 100 (242)
Q Consensus 83 ~d~lYwtd~~~~~i~~~~ 100 (242)
+.+||-+....+.|...+
T Consensus 91 g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 91 GRFLFSASYNANCVSVSP 108 (330)
T ss_pred CCEEEEEEcCCCeEEEEE
Confidence 567888776666555444
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.91 E-value=1.2 Score=39.69 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=61.9
Q ss_pred CcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeC---------CCCcEEEEeccCCc-eEEEEcCC------C-
Q psy13634 12 GTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNL---------LSSSIESIDIEGRN-KITIVANI------E- 73 (242)
Q Consensus 12 ~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~---------~~~~I~~~~~dG~~-~~~l~~~~------~- 73 (242)
.+|...+.+--...--+... +|+++ +.+..+.||-+.. ..+.|+-+|..-.. ...|.... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 45655555443333334444 99997 9999999999999 77888888875433 22232111 1
Q ss_pred -CceEEEEEeCCEEEEEeCC-CCeEEEEECCCCc
Q psy13634 74 -DKPVTLTLYKSEIFYSNWD-KRSIEKYDKTSHT 105 (242)
Q Consensus 74 -~~p~~l~v~~d~lYwtd~~-~~~i~~~~k~~g~ 105 (242)
++-++|+-.+.+||..++. ...+-.++..+++
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA 139 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence 2245555667899999888 7888888877665
No 37
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=95.67 E-value=0.0094 Score=33.71 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=19.9
Q ss_pred cCCccccccCCCCCCCCceeEecCCCcccc
Q psy13634 139 NECDYLCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 139 g~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
..|...|-|... ..|.||+||.|.
T Consensus 6 t~CpA~CDpn~~------~~C~CPeGyIld 29 (34)
T PF09064_consen 6 TECPADCDPNSP------GQCFCPEGYILD 29 (34)
T ss_pred ccCCCccCCCCC------CceeCCCceEec
Confidence 478888888665 589999999887
No 38
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.52 E-value=0.035 Score=39.22 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCC
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGR 63 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~ 63 (242)
..+++.+-++.....++|++.. .|||+++....+-|..++....+|.+.-+.|.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence 5688999999988889999988 99999999999999999999999999988874
No 39
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.44 E-value=1.6 Score=37.92 Aligned_cols=92 Identities=3% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCcEEEEecCCCCcEEEEeC---C-ccceEEEeccCCEEEEEeCCCCcEEEEecc--CCceEEEE-cCCCCceEEEEEe-
Q psy13634 11 GGTIERSALDGTQRSVLLHK---V-KANSLTVNYDEKRVYYVNLLSSSIESIDIE--GRNKITIV-ANIEDKPVTLTLY- 82 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~---~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~d--G~~~~~l~-~~~~~~p~~l~v~- 82 (242)
...|..-+++++....++.. . .|.+|++|+..++||=+....+.|...+++ |.-.+.+- .....+|.++++.
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p 135 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP 135 (330)
T ss_pred CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC
Confidence 45665555554333333332 2 899999999999999988777888888775 32212111 1224678887776
Q ss_pred -CCEEEEEeCCCCeEEEEECC
Q psy13634 83 -KSEIFYSNWDKRSIEKYDKT 102 (242)
Q Consensus 83 -~d~lYwtd~~~~~i~~~~k~ 102 (242)
+.++|-++...+.|...+..
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEEC
Confidence 46899999888877766643
No 40
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.40 E-value=2 Score=39.01 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=63.8
Q ss_pred CcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEEE
Q psy13634 12 GTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEIF 87 (242)
Q Consensus 12 ~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~lY 87 (242)
..|+.++.||.+.+.|.... ...+.+..+..++|+|+... ...|...++++..++.+.... .......+-.+.+|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46888999999998887765 56677888888899998643 346888999877766443221 111223334567787
Q ss_pred EEeCCC--CeEEEEECCCCc
Q psy13634 88 YSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 88 wtd~~~--~~i~~~~k~~g~ 105 (242)
++-... ..|+..+..+|+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred EEEeCCCCceEEEEECCCCC
Confidence 764433 368888877666
No 41
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=95.31 E-value=0.043 Score=29.78 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=21.8
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIES 57 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~ 57 (242)
.|.||++| .++.||-+|....+|..
T Consensus 3 ~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 69999999 78999999998887753
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.30 E-value=2.3 Score=38.99 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEI 86 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~l 86 (242)
..+|+.++.||.+.+.|.... .....+..+..++|+|+... ...|...++++...+.+.... .......+-.+++|
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 357899999999998887766 55677888888999998543 356999999887766443221 12223344567788
Q ss_pred EEEeCCCC--eEEEEECCCCc
Q psy13634 87 FYSNWDKR--SIEKYDKTSHT 105 (242)
Q Consensus 87 Ywtd~~~~--~i~~~~k~~g~ 105 (242)
+++....+ .|+.++..+++
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCC
Confidence 88644333 58888877666
No 43
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.78 E-value=0.085 Score=36.98 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=37.0
Q ss_pred EecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEec
Q psy13634 17 SALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDI 60 (242)
Q Consensus 17 a~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~ 60 (242)
.-.||++.+++.+.. .|+||++|+..+.||-++.....|.....
T Consensus 39 vyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 39 VYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred EEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 345788888888887 99999999999999999988888776543
No 44
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=94.73 E-value=0.041 Score=30.79 Aligned_cols=25 Identities=48% Similarity=1.083 Sum_probs=19.2
Q ss_pred cCCc--cccccCCCCCCCCceeEecCCCcccc
Q psy13634 139 NECD--YLCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 139 g~Cs--~lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
+.|. ..|...+++ ++|.|+.||...
T Consensus 6 ~~C~~~~~C~~~~~~-----~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGS-----YRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCC-----eEeECCCCCccc
Confidence 3565 678888866 999999998643
No 45
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.58 E-value=2.5 Score=35.73 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=51.2
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEeC-CEEEEEeCCCCeEEEEEC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYK-SEIFYSNWDKRSIEKYDK 101 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~-d~lYwtd~~~~~i~~~~k 101 (242)
.+.|||.|+.+++||=+.-....|...+++|.-.+.+--.+...|-||++.+ +.+.-++...+.++.+..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 5899999999999999988889999999998765555444568899999887 455556666777776654
No 46
>KOG1520|consensus
Probab=94.38 E-value=0.17 Score=44.90 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCCcEEEEeCC------ccceEEEeccCCEEEEEeCCC----CcEEEEeccC-------------CceEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV------KANSLTVNYDEKRVYYVNLLS----SSIESIDIEG-------------RNKIT 67 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~------~P~glaiD~~~~rLYW~D~~~----~~I~~~~~dG-------------~~~~~ 67 (242)
.-.++..+.+|...+.+.+.. -.++|.||. ++.+||+|+.. ..+.-+-+.| ...+
T Consensus 135 YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~- 212 (376)
T KOG1520|consen 135 YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK- 212 (376)
T ss_pred ceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchh-
Confidence 345777778887766666552 689999999 99999999865 1222233333 2222
Q ss_pred EEcCCCCceEEEEE--eCCEEEEEeCCCCeEEEEECCCCc---eEEEecC
Q psy13634 68 IVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHT---RSVIYRS 112 (242)
Q Consensus 68 l~~~~~~~p~~l~v--~~d~lYwtd~~~~~i~~~~k~~g~---~~~~~~~ 112 (242)
++-.++..|-|+++ .++++.+++-...+|.+.-....+ .+++..+
T Consensus 213 VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~ 262 (376)
T KOG1520|consen 213 VLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEG 262 (376)
T ss_pred hhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhc
Confidence 33345778888776 578899998887777665433222 3555554
No 47
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.54 E-value=1.5 Score=38.22 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=65.4
Q ss_pred EEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEecc-CCceEEEEcCCCCceEEEEEeCCEEEEEeCCCC--------
Q psy13634 25 SVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIE-GRNKITIVANIEDKPVTLTLYKSEIFYSNWDKR-------- 94 (242)
Q Consensus 25 ~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~d-G~~~~~l~~~~~~~p~~l~v~~d~lYwtd~~~~-------- 94 (242)
++|++.. .|.+--.. +++||..|++++.+.+++.+ |.... +..- -..|.||++.+++++-+-...+
T Consensus 196 evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~-Va~v-pG~~rGL~f~G~llvVgmSk~R~~~~f~gl 271 (335)
T TIGR03032 196 EVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQP-VAFL-PGFTRGLAFAGDFAFVGLSKLRESRVFGGL 271 (335)
T ss_pred CEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEE-EEEC-CCCCcccceeCCEEEEEeccccCCCCcCCC
Confidence 3444443 45444433 69999999999999999998 55554 3321 2589999999998887653211
Q ss_pred -----------eEEEEECCCCc-eEEEe-cCCcccccceEEecccccc
Q psy13634 95 -----------SIEKYDKTSHT-RSVIY-RSSEKEINDMLIYHPSRQT 129 (242)
Q Consensus 95 -----------~i~~~~k~~g~-~~~~~-~~~~~~p~~i~i~~~~~q~ 129 (242)
.|..+|..+|. ...+. ++.....+++.|.-..++|
T Consensus 272 pl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 272 PIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP 319 (335)
T ss_pred chhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence 36677777887 54443 2225666777766554443
No 48
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.31 E-value=0.62 Score=40.19 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=47.3
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccC----CceEEEEcC-C-CCceEEEEEeC---CEEEEEeC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEG----RNKITIVAN-I-EDKPVTLTLYK---SEIFYSNW 91 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG----~~~~~l~~~-~-~~~p~~l~v~~---d~lYwtd~ 91 (242)
.-.|+++|. ++.||+++.....|.+.+.++ .+.++|.+. . +..|-++++.+ ++||...-
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 568999998 899999999999999999998 555656643 3 78999999988 88998753
No 49
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.24 E-value=6.4 Score=35.83 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=63.0
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCC-CceEEEEEeCCE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIE-DKPVTLTLYKSE 85 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~-~~p~~l~v~~d~ 85 (242)
..+.|+..++++..++.|.+.. ....-.+.+..++|.++.... ..|..++++|...+.|..... ...-..+-.+..
T Consensus 211 ~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 211 RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCE
Confidence 3689999999888777776543 333345666677888875433 579999998877654543321 122234455788
Q ss_pred EEEEeCCC--CeEEEEECCCCc
Q psy13634 86 IFYSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 86 lYwtd~~~--~~i~~~~k~~g~ 105 (242)
|||+.... ..|+.++..+|+
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred EEEEECCCCCceEEEEECCCCC
Confidence 88887543 368888877666
No 50
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.81 E-value=7.3 Score=35.37 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCCCCceEEEE--EeCC
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANIEDKPVTLT--LYKS 84 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~~~~p~~l~--v~~d 84 (242)
...+|+.++.||.+.+.+.... .-...++.+..++|+++... ...|...++++..++.+.... ......+ -.++
T Consensus 174 ~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~ 252 (427)
T PRK02889 174 NRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGR 252 (427)
T ss_pred CccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC
Confidence 3468999999999988887665 55567788888899887643 346888999877665443221 1122233 3456
Q ss_pred EEEEEeCC--CCeEEEEECCCCc
Q psy13634 85 EIFYSNWD--KRSIEKYDKTSHT 105 (242)
Q Consensus 85 ~lYwtd~~--~~~i~~~~k~~g~ 105 (242)
.|+++-.. ...|+.++..++.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC
Confidence 77775333 2367888765554
No 51
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=92.68 E-value=0.056 Score=30.37 Aligned_cols=19 Identities=58% Similarity=1.441 Sum_probs=14.2
Q ss_pred ccccCCCCCCCCceeEecCCCcc
Q psy13634 144 LCLATPGRGGGLNYKCECPTHYT 166 (242)
Q Consensus 144 lCl~~~~~~~~~~~~C~Cp~g~~ 166 (242)
.|+.....+ |.|.|+.||.
T Consensus 11 ~C~~~~~~~----y~C~C~~G~~ 29 (32)
T PF00008_consen 11 TCIDLPGGG----YTCECPPGYT 29 (32)
T ss_dssp EEEEESTSE----EEEEEBTTEE
T ss_pred EEEeCCCCC----EEeECCCCCc
Confidence 566666332 9999999985
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.51 E-value=8.1 Score=35.11 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=64.5
Q ss_pred CCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeC--CCCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNL--LSSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEI 86 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~--~~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~l 86 (242)
...|+.++.||.+.+.|.... .....++.+..++|+++.. +...|...++++..++.+.... ...-...+-.++.|
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 568999999999999888766 6667777777888988754 3467999999877666443221 11222334456777
Q ss_pred EEEeCC--CCeEEEEECCCCc
Q psy13634 87 FYSNWD--KRSIEKYDKTSHT 105 (242)
Q Consensus 87 Ywtd~~--~~~i~~~~k~~g~ 105 (242)
+++-.. ...|+.++..++.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred EEEEecCCCceEEEEECCCCc
Confidence 766433 2458888876665
No 53
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.39 E-value=2.7 Score=34.99 Aligned_cols=88 Identities=8% Similarity=0.069 Sum_probs=60.7
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEE--eCCEEEEEeCCCCeEEEEECCCCc-eEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHT-RSV 108 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v--~~d~lYwtd~~~~~i~~~~k~~g~-~~~ 108 (242)
.|.++++++..+.+|.+....+.|...++........+.. -..|.++++ .+.+||-+....+.|...+..+++ .+.
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 5678999988888898877777788777754332212211 235667776 456888777778889999988888 666
Q ss_pred EecCCcccccceEE
Q psy13634 109 IYRSSEKEINDMLI 122 (242)
Q Consensus 109 ~~~~~~~~p~~i~i 122 (242)
+..+ ..|.+|.+
T Consensus 287 ~~~~--~~~~~~~~ 298 (300)
T TIGR03866 287 IKVG--RLPWGVVV 298 (300)
T ss_pred EEcc--cccceeEe
Confidence 6543 56788764
No 54
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.96 E-value=4.2 Score=36.94 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=62.2
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCCCceEEEEEeCCEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIEDKPVTLTLYKSEI 86 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~l 86 (242)
..++|++.+++|...+.|.... .-...++.+..++|+++.... ..|..++++|...+.+...........+-.+..|
T Consensus 312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVI 391 (435)
T ss_pred CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEE
Confidence 4578999999998777776543 444566777788888876433 4688888888776644332211222334456788
Q ss_pred EEEeCCC-----CeEEEEECCCCce
Q psy13634 87 FYSNWDK-----RSIEKYDKTSHTR 106 (242)
Q Consensus 87 Ywtd~~~-----~~i~~~~k~~g~~ 106 (242)
+++-... ..++.++..+++.
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEccCCCCCcceEEEEECCCCce
Confidence 8865432 3688888765443
No 55
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=91.64 E-value=0.75 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.1
Q ss_pred CceeeEEEeCCCCEEEEEECCCCcEEE
Q psy13634 208 KNIKALDYDPVARQIYWIDSKLQAIKR 234 (242)
Q Consensus 208 ~~~~~l~~d~~~~~iYw~d~~~~~I~r 234 (242)
..|.+|++| .++.||-+|...+.|..
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 467889999 88899999999888864
No 56
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=91.62 E-value=0.27 Score=27.76 Aligned_cols=29 Identities=45% Similarity=1.111 Sum_probs=20.2
Q ss_pred ccccCcccCC--ccccccCCCCCCCCceeEecCCCcc
Q psy13634 132 NKCAVANNEC--DYLCLATPGRGGGLNYKCECPTHYT 166 (242)
Q Consensus 132 n~C~~~ng~C--s~lCl~~~~~~~~~~~~C~Cp~g~~ 166 (242)
++|... ..| ...|...+++ +.|.|+.||.
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~~~-----~~C~C~~g~~ 33 (38)
T cd00054 3 DECASG-NPCQNGGTCVNTVGS-----YRCSCPPGYT 33 (38)
T ss_pred ccCCCC-CCcCCCCEeECCCCC-----eEeECCCCCc
Confidence 455432 246 3578887776 9999999986
No 57
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=10 Score=33.91 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=60.0
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEE-EEcCCCCceEEEEE--eCCEEEEEeCC--CCeEEEEECCCCc-
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKIT-IVANIEDKPVTLTL--YKSEIFYSNWD--KRSIEKYDKTSHT- 105 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~-l~~~~~~~p~~l~v--~~d~lYwtd~~--~~~i~~~~k~~g~- 105 (242)
.|++++++....++|-.....+.|..++........ +... ..|.++++ .+.++|-++.. .+.+..++..+++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 689999999999999999998999988854433222 2222 25555555 57799999994 6889999988777
Q ss_pred eEEEecCCcccccceE
Q psy13634 106 RSVIYRSSEKEINDML 121 (242)
Q Consensus 106 ~~~~~~~~~~~p~~i~ 121 (242)
...+..+ ..|.++.
T Consensus 153 ~~~~~vG--~~P~~~a 166 (381)
T COG3391 153 TATIPVG--NTPTGVA 166 (381)
T ss_pred EEEEecC--CCcceEE
Confidence 4434433 2344444
No 58
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.26 E-value=2.7 Score=35.44 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=39.7
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEE-cC-------CCCceEEEEEeC-CEEEEEeC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIV-AN-------IEDKPVTLTLYK-SEIFYSNW 91 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~-~~-------~~~~p~~l~v~~-d~lYwtd~ 91 (242)
.|.+|++|+.++.||-.......|...+.+|.-...+- .. .+++|-|||+.. +.||-+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 79999999999999999999999999999998655332 22 257899999985 67887753
No 59
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=90.90 E-value=8.9 Score=34.34 Aligned_cols=94 Identities=15% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCcEEEEecC-CCCcEEEEeC-----------C-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEc-----CC
Q psy13634 11 GGTIERSALD-GTQRSVLLHK-----------V-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVA-----NI 72 (242)
Q Consensus 11 ~~~I~ra~mD-Gs~~~~lv~~-----------~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~-----~~ 72 (242)
...++.+++. +.+...+++. . .|.++++|+..+++|-++.....|.-.+..+..... -. ..
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~ 205 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGV 205 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccccc
Confidence 4678888886 3444433332 1 599999999999999999888999999877665542 11 12
Q ss_pred CCceEEEEE--eCCEEEEEeCCC--CeEEEEECCCCc
Q psy13634 73 EDKPVTLTL--YKSEIFYSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 73 ~~~p~~l~v--~~d~lYwtd~~~--~~i~~~~k~~g~ 105 (242)
...|.++++ .+.++|-++..+ +.+..++-.++.
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 467888777 578899999887 688888877766
No 60
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.78 E-value=7.6 Score=35.59 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=61.6
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCC-CceEEEEEeCCE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIE-DKPVTLTLYKSE 85 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~-~~p~~l~v~~d~ 85 (242)
..+.|++.++++...+.|.... ...+.++.+..+.||++.... ..|..+++++...+.+..... ..| +.+-.+..
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~ 406 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTM 406 (448)
T ss_pred CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCE
Confidence 4578999999876666554333 555668888888999986543 368888998877664433222 234 45566788
Q ss_pred EEEEeCCCC--eEEEEECCCCc
Q psy13634 86 IFYSNWDKR--SIEKYDKTSHT 105 (242)
Q Consensus 86 lYwtd~~~~--~i~~~~k~~g~ 105 (242)
|+|+....+ .++.++. +|.
T Consensus 407 I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred EEEEEecCCceEEEEEEC-CCC
Confidence 888775443 4666775 344
No 61
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.24 E-value=8.8 Score=34.95 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=63.7
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--------CcEEEEeccCCceEEEEcCCCCceEEEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--------SSIESIDIEGRNKITIVANIEDKPVTLT 80 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--------~~I~~~~~dG~~~~~l~~~~~~~p~~l~ 80 (242)
..+.|++.+++|...+.+.... . + ..+.+..++|.++-... ..|..++++|...+.|...........+
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~S 376 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFS 376 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEEC
Confidence 5689999999988876666543 2 2 37788888898886543 4789999988877755443332223456
Q ss_pred EeCCEEEEEeCCC--CeEEEEECCCCc
Q psy13634 81 LYKSEIFYSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 81 v~~d~lYwtd~~~--~~i~~~~k~~g~ 105 (242)
-.+..|+|+.... ..+..++..+..
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 6788888887543 347777765433
No 62
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=88.82 E-value=0.25 Score=21.85 Aligned_cols=9 Identities=44% Similarity=1.394 Sum_probs=6.8
Q ss_pred eEecCCCcc
Q psy13634 158 KCECPTHYT 166 (242)
Q Consensus 158 ~C~Cp~g~~ 166 (242)
+|.|+.||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 599999986
No 63
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.60 E-value=18 Score=32.60 Aligned_cols=94 Identities=20% Similarity=0.157 Sum_probs=63.5
Q ss_pred CcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEEE
Q psy13634 12 GTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEIF 87 (242)
Q Consensus 12 ~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~lY 87 (242)
-+|+.++.||.+.+.|.... .....+..+..++|+|+... ...|...++++...+.+.... ........-.+++|+
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 36999999999988887765 55677888888999887533 357999999877766543322 111223334567888
Q ss_pred EEeCCC--CeEEEEECCCCc
Q psy13634 88 YSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 88 wtd~~~--~~i~~~~k~~g~ 105 (242)
++-... ..|+..+..+++
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred EEEccCCCceEEEEECCCCC
Confidence 765433 368888877666
No 64
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.53 E-value=11 Score=34.24 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCC-CceEEEEEeCCE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIE-DKPVTLTLYKSE 85 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~-~~p~~l~v~~d~ 85 (242)
..+.|+..++++...+.|.... .....++.+..+.|+++.... ..|...++++...+.+..... ..| ..+-.+.+
T Consensus 314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~ 392 (433)
T PRK04922 314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSM 392 (433)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc-eECCCCCE
Confidence 3578999999877666655444 555788888889999876432 368888988776664433222 222 34455677
Q ss_pred EEEEeCC--CCeEEEEECCC
Q psy13634 86 IFYSNWD--KRSIEKYDKTS 103 (242)
Q Consensus 86 lYwtd~~--~~~i~~~~k~~ 103 (242)
|+++... ...|+.++..+
T Consensus 393 i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 393 VLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEEecCCceEEEEEECCC
Confidence 8877653 33577777643
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=88.26 E-value=18 Score=32.20 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCCCceEEEEE--eCC
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIEDKPVTLTL--YKS 84 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~~~p~~l~v--~~d 84 (242)
....|+.++.||.+.+.|+... .....++.+..++|+|+.... ..|...++.+...+.+.... ....++++ .+.
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~ 246 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGS 246 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC
Confidence 3567999999999998888765 455667788889999986543 56888888766554333211 12223333 456
Q ss_pred EEEEEeCCC--CeEEEEECCCCc
Q psy13634 85 EIFYSNWDK--RSIEKYDKTSHT 105 (242)
Q Consensus 85 ~lYwtd~~~--~~i~~~~k~~g~ 105 (242)
.|+++.... ..|+..+..++.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC
Confidence 787765433 358888866665
No 66
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.72 E-value=15 Score=32.78 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCC-CCceEEEEEeCCE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANI-EDKPVTLTLYKSE 85 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~ 85 (242)
..++|++.++++...+.|.... .....++.+..+.|+++.... ..|..+++++...+.+.... ...| ..+..+.+
T Consensus 300 g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~ 378 (417)
T TIGR02800 300 GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP-SFAPNGRM 378 (417)
T ss_pred CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc-eECCCCCE
Confidence 3568999999988776665555 667788888888999987643 37888888886655443222 1222 34556778
Q ss_pred EEEEeCCC
Q psy13634 86 IFYSNWDK 93 (242)
Q Consensus 86 lYwtd~~~ 93 (242)
|+++....
T Consensus 379 l~~~~~~~ 386 (417)
T TIGR02800 379 ILYATTRG 386 (417)
T ss_pred EEEEEeCC
Confidence 88887654
No 67
>KOG4659|consensus
Probab=87.21 E-value=1.8 Score=44.30 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=47.4
Q ss_pred CceeEEEeeeceEEEEecCCCCCCCccEecCCCCceeeEEEeCCCCEEEEEECCCCcEEEEe
Q psy13634 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236 (242)
Q Consensus 175 ~~~fl~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~ 236 (242)
|+.-|++.+.+-|+||+.++....-..|-+.....---|+.||+.+.||-+|...++|+|++
T Consensus 374 ~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 374 PDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVS 435 (1899)
T ss_pred CCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEec
Confidence 66788999999999999886433222333334444456888999999999999999999987
No 68
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.42 E-value=25 Score=31.87 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEI 86 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~l 86 (242)
..+|+.++.||.+++.|.... .....+..+..++|.|+... ...|...++.+..++.+.... ........-.+..|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 368999999999988877655 67788888889999987543 346888888876655443221 11222333456788
Q ss_pred EEEeCCCC--eEEEEECCCCc
Q psy13634 87 FYSNWDKR--SIEKYDKTSHT 105 (242)
Q Consensus 87 Ywtd~~~~--~i~~~~k~~g~ 105 (242)
+++-...+ .|+.++..+++
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC
Confidence 88754333 57788876665
No 69
>PRK00178 tolB translocation protein TolB; Provisional
Probab=85.61 E-value=24 Score=31.87 Aligned_cols=92 Identities=9% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCC-CceEEEEEeCCE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIE-DKPVTLTLYKSE 85 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~-~~p~~l~v~~d~ 85 (242)
..+.|++.++++...+.+.... .....++.+..+.|+++.... ..|..+++++...+.+..... ..| ..+-.+..
T Consensus 309 g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~ 387 (430)
T PRK00178 309 GKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTM 387 (430)
T ss_pred CCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCc-eECCCCCE
Confidence 4578999998877666554333 334456777788999987543 358888988876664433222 233 45556788
Q ss_pred EEEEeCCC--CeEEEEECC
Q psy13634 86 IFYSNWDK--RSIEKYDKT 102 (242)
Q Consensus 86 lYwtd~~~--~~i~~~~k~ 102 (242)
|+++.... ..|+.++..
T Consensus 388 i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEEecCCceEEEEEECC
Confidence 88887654 346666654
No 70
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.57 E-value=28 Score=31.53 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCCCceEEEEEeCCEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIEDKPVTLTLYKSEI 86 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~l 86 (242)
..+.|+..+++|...+.+.... .....++.+..+.|+++.... ..|...++++...+.+...........+-.+..|
T Consensus 306 g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l 385 (427)
T PRK02889 306 GAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYI 385 (427)
T ss_pred CCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEE
Confidence 4578999998877655554333 344567778788898876543 3688888887666645433221222344456777
Q ss_pred EEEeCCCC--eEEEEECC
Q psy13634 87 FYSNWDKR--SIEKYDKT 102 (242)
Q Consensus 87 Ywtd~~~~--~i~~~~k~ 102 (242)
+++....+ .++.++..
T Consensus 386 ~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 386 LYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEecCCCEEEEEEECC
Confidence 77654332 46666653
No 71
>KOG1219|consensus
Probab=83.34 E-value=1 Score=48.59 Aligned_cols=28 Identities=39% Similarity=1.175 Sum_probs=14.3
Q ss_pred ccccCcccCCcc--ccccCCCCCCCCceeEecCCCc
Q psy13634 132 NKCAVANNECDY--LCLATPGRGGGLNYKCECPTHY 165 (242)
Q Consensus 132 n~C~~~ng~Cs~--lCl~~~~~~~~~~~~C~Cp~g~ 165 (242)
.+|..+ .|+| -|...|.+. |+|.||.-|
T Consensus 3865 d~C~~n--pCqhgG~C~~~~~gg----y~CkCpsqy 3894 (4289)
T KOG1219|consen 3865 DPCNDN--PCQHGGTCISQPKGG----YKCKCPSQY 3894 (4289)
T ss_pred cccccC--cccCCCEecCCCCCc----eEEeCcccc
Confidence 555544 4544 455555543 555555444
No 72
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.64 E-value=7.5 Score=34.00 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=54.0
Q ss_pred ccceEEEeccCCEEEEEeCCC---------------CcEEEEeccCCceEEEEcCCCCceEEEEEeCCEEEEEeCCCCeE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLS---------------SSIESIDIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSI 96 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~---------------~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~lYwtd~~~~~i 96 (242)
.-||||++ +++..|+-+-. +.+ +++. .-+ ++.+++..|.+.-.+++.||.+|+.++.|
T Consensus 153 HLNGlA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~v--idv~--s~e-vl~~GLsmPhSPRWhdgrLwvldsgtGev 225 (335)
T TIGR03032 153 HLNGMALD--DGEPRYVTALSQSDVADGWREGRRDGGCV--IDIP--SGE-VVASGLSMPHSPRWYQGKLWLLNSGRGEL 225 (335)
T ss_pred eecceeee--CCeEEEEEEeeccCCcccccccccCCeEE--EEeC--CCC-EEEcCccCCcCCcEeCCeEEEEECCCCEE
Confidence 67899997 56666653311 111 1221 112 33455889999999999999999999999
Q ss_pred EEEECCCCceEEEecCCcccccceEE
Q psy13634 97 EKYDKTSHTRSVIYRSSEKEINDMLI 122 (242)
Q Consensus 97 ~~~~k~~g~~~~~~~~~~~~p~~i~i 122 (242)
.+++..+|+.+.+..- -..|.||..
T Consensus 226 ~~vD~~~G~~e~Va~v-pG~~rGL~f 250 (335)
T TIGR03032 226 GYVDPQAGKFQPVAFL-PGFTRGLAF 250 (335)
T ss_pred EEEcCCCCcEEEEEEC-CCCCcccce
Confidence 9999888883333322 134455543
No 73
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.37 E-value=2.4 Score=38.98 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCC----------cEEEEeCC--ccceEEEeccCCEEEEEeCCCCc
Q psy13634 11 GGTIERSALDGTQ----------RSVLLHKV--KANSLTVNYDEKRVYYVNLLSSS 54 (242)
Q Consensus 11 ~~~I~ra~mDGs~----------~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~~ 54 (242)
..+|.|.+.||+- +..|.... .|.||++|+ +++||.+|.+.+.
T Consensus 198 ~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~ 252 (454)
T TIGR03606 198 MGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNS 252 (454)
T ss_pred ceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCC
Confidence 4689999999983 33455554 899999999 8999999988763
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.02 E-value=27 Score=28.78 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEe--CCEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLY--KSEI 86 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~--~d~l 86 (242)
..+.|.+-+++.......++.. .|.++++++..+.||-+....+.|...+.++......+.. ...|..+++. ++.+
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l 87 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-GPDPELFALHPNGKIL 87 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-CCCccEEEECCCCCEE
Confidence 4578888888654444444545 7899999988888888877777888888875443222222 1334555554 4567
Q ss_pred EEEeCCCCeEEEEECCCC
Q psy13634 87 FYSNWDKRSIEKYDKTSH 104 (242)
Q Consensus 87 Ywtd~~~~~i~~~~k~~g 104 (242)
|-+....+.|...+..++
T Consensus 88 ~~~~~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETR 105 (300)
T ss_pred EEEcCCCCeEEEEECCCC
Confidence 766555566666665443
No 75
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=81.64 E-value=38 Score=30.17 Aligned_cols=98 Identities=9% Similarity=0.161 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCCcEEE--EeC--------C-ccce---EEEeccCCEEEEEeCCC---------CcEEEEeccCCceEE
Q psy13634 11 GGTIERSALDGTQRSVL--LHK--------V-KANS---LTVNYDEKRVYYVNLLS---------SSIESIDIEGRNKIT 67 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~l--v~~--------~-~P~g---laiD~~~~rLYW~D~~~---------~~I~~~~~dG~~~~~ 67 (242)
...|...++.|...... +.. . +|-| ++++...++||-+-.+. ..|..+|.....+..
T Consensus 214 eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 214 TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 37888888877554432 221 2 4666 99999999999953222 467766654333222
Q ss_pred EEcCCCCceEEEEEe--CC-EEEEEeCCCCeEEEEECCCCc-eEEE
Q psy13634 68 IVANIEDKPVTLTLY--KS-EIFYSNWDKRSIEKYDKTSHT-RSVI 109 (242)
Q Consensus 68 l~~~~~~~p~~l~v~--~d-~lYwtd~~~~~i~~~~k~~g~-~~~~ 109 (242)
-+.- -..|.+|++- +. .||-+.+.++.|..++..+++ ...+
T Consensus 294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 294 KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1211 2567777775 46 888898888989999988777 4444
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.35 E-value=42 Score=30.48 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCCCCceEEEEEeCCEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVANIEDKPVTLTLYKSEI 86 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~l 86 (242)
..++|++.+++|...+.|.... .....++.+..+.|+++.... ..|..+++++...+.+...........+-.+..|
T Consensus 309 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMV 388 (429)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEE
Confidence 3578999999987776664443 455677778788888875433 4588888887776644322112223455567778
Q ss_pred EEEeCCCC--eEEEEECC
Q psy13634 87 FYSNWDKR--SIEKYDKT 102 (242)
Q Consensus 87 Ywtd~~~~--~i~~~~k~ 102 (242)
+++....+ .++.++.+
T Consensus 389 ~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 389 IYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEcCCCceEEEEEECC
Confidence 88775433 35566654
No 77
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.12 E-value=5.3 Score=34.43 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=35.3
Q ss_pred CEEeecCCCCCCcEEEEecCC----CCcEEEEeCC----ccceEEEec-cCCEEEEEeCCCC
Q psy13634 1 MLWSDWGAGNGGTIERSALDG----TQRSVLLHKV----KANSLTVNY-DEKRVYYVNLLSS 53 (242)
Q Consensus 1 lyWtd~g~~~~~~I~ra~mDG----s~~~~lv~~~----~P~glaiD~-~~~rLYW~D~~~~ 53 (242)
||+++. ....|.+.+.++ .+.++|++.. ||.+|++|. ..+.||..-....
T Consensus 199 ly~~~~---~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 199 LYFTDV---EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp EEEEEC---CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred EEEecC---CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence 688987 478999999999 5667777653 999999997 4588888775543
No 78
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.25 E-value=45 Score=29.51 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCcEEEEecCCC-CcEEEEeCC-----ccceEEEeccCCEEEEEeCCCCcEEEEec--cCCceE---EEEcCCC------
Q psy13634 11 GGTIERSALDGT-QRSVLLHKV-----KANSLTVNYDEKRVYYVNLLSSSIESIDI--EGRNKI---TIVANIE------ 73 (242)
Q Consensus 11 ~~~I~ra~mDGs-~~~~lv~~~-----~P~glaiD~~~~rLYW~D~~~~~I~~~~~--dG~~~~---~l~~~~~------ 73 (242)
...|..-..|+- .+-++++.. .|.-+++|...+-||-+.-..+.|...-+ ||.-.. ++....-
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 456666677764 677777653 56999999999999999888887777766 454332 2222111
Q ss_pred ----CceEEEEEeCCEEEEEeCCCCeEEEEECCCCc
Q psy13634 74 ----DKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHT 105 (242)
Q Consensus 74 ----~~p~~l~v~~d~lYwtd~~~~~i~~~~k~~g~ 105 (242)
.|+..++-.+++|.-.|....+|...+...|.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 35566777788999999998888766655665
No 79
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.38 E-value=10 Score=21.64 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=26.4
Q ss_pred CCEEEEEeCCCCeEEEEECCCCc-eEEEecCCcccccceE
Q psy13634 83 KSEIFYSNWDKRSIEKYDKTSHT-RSVIYRSSEKEINDML 121 (242)
Q Consensus 83 ~d~lYwtd~~~~~i~~~~k~~g~-~~~~~~~~~~~p~~i~ 121 (242)
+++||-+++..+.|..++..+++ ...+..+ ..|.+|.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~ 40 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVA 40 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEE
Confidence 57899999999999989876666 4444433 4566665
No 80
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.35 E-value=38 Score=29.66 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=56.2
Q ss_pred ccceEEEeccCCEEEEEeCCC-------------CcEEEEeccCCceEEEEcC-CCCceEEEEE-------eCCEEEEEe
Q psy13634 32 KANSLTVNYDEKRVYYVNLLS-------------SSIESIDIEGRNKITIVAN-IEDKPVTLTL-------YKSEIFYSN 90 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~-------------~~I~~~~~dG~~~~~l~~~-~~~~p~~l~v-------~~d~lYwtd 90 (242)
.|-+|. -..++||-+-+.. ..|...+++|.-.+.+.+. .+..|+||++ +.+.|.-..
T Consensus 190 APFnIq--nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGN 267 (336)
T TIGR03118 190 APFNVQ--NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGN 267 (336)
T ss_pred CCcceE--EECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEee
Confidence 455553 3469999875433 5788888999877655444 3789999998 347888888
Q ss_pred CCCCeEEEEECCCCc-eEEEe
Q psy13634 91 WDKRSIEKYDKTSHT-RSVIY 110 (242)
Q Consensus 91 ~~~~~i~~~~k~~g~-~~~~~ 110 (242)
...+.|-..+..+|+ .-.+.
T Consensus 268 FGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 268 FGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred cCCceeEEecCCCCceeeeec
Confidence 889999988888887 54443
No 81
>KOG4499|consensus
Probab=78.07 E-value=36 Score=28.77 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=35.2
Q ss_pred CCCcEEEEeC-------C-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCc
Q psy13634 21 GTQRSVLLHK-------V-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRN 64 (242)
Q Consensus 21 Gs~~~~lv~~-------~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~ 64 (242)
=++|++|++- . .|.|++||- ++.||-+-...++|.++|+....
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCc
Confidence 3788888753 1 799999997 89999999999999999886443
No 82
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.99 E-value=8.6 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=30.6
Q ss_pred cEecCCCCceeeEEEeCCCCEEEEEECCCCcEEEEeC
Q psy13634 201 PYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237 (242)
Q Consensus 201 ~~p~~~~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~ 237 (242)
...+.++..+-+|.+|+..++||-++...+.|..-++
T Consensus 47 ~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 47 KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 4456778888899999999999999999888876543
No 83
>PRK01029 tolB translocation protein TolB; Provisional
Probab=73.24 E-value=74 Score=28.98 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCC--cEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCCCCceEEEE--Ee
Q psy13634 10 NGGTIERSALDGTQ--RSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANIEDKPVTLT--LY 82 (242)
Q Consensus 10 ~~~~I~ra~mDGs~--~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~~~~p~~l~--v~ 82 (242)
..++|++.++++.. .+.|.... .....+..+..++|+++... ...|..+++++...+.+.... ......+ -.
T Consensus 303 g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~-~~~~~p~wSpD 381 (428)
T PRK01029 303 GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP-ENKESPSWAID 381 (428)
T ss_pred CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC-CCccceEECCC
Confidence 45789998887532 33333333 44566777878889988543 346888999888776554331 1222333 35
Q ss_pred CCEEEEEeCC--CCeEEEEECCCCce
Q psy13634 83 KSEIFYSNWD--KRSIEKYDKTSHTR 106 (242)
Q Consensus 83 ~d~lYwtd~~--~~~i~~~~k~~g~~ 106 (242)
+..|+++... ...|+.++..+++.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCE
Confidence 6778876543 34688888776663
No 84
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=72.44 E-value=17 Score=31.97 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-cc-ceEEEeccCCEEEEEeCC----CCcEEEEecc-CCceEEEEcCCCCceEEEEEe
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KA-NSLTVNYDEKRVYYVNLL----SSSIESIDIE-GRNKITIVANIEDKPVTLTLY 82 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P-~glaiD~~~~rLYW~D~~----~~~I~~~~~d-G~~~~~l~~~~~~~p~~l~v~ 82 (242)
.-.+|...+++|...+.|.... .. .-+.+|..+++||+.-.. ...+.+++++ |...+.|-.....+ +.+++-
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEEC
Confidence 4678999999998877555555 34 358899999999999775 3589999999 77776443333344 444443
No 85
>KOG1219|consensus
Probab=70.88 E-value=3.2 Score=45.15 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=15.9
Q ss_pred cccCCCCCCCCceeEecCCCccccCCcccC
Q psy13634 145 CLATPGRGGGLNYKCECPTHYTMVNGTCMA 174 (242)
Q Consensus 145 Cl~~~~~~~~~~~~C~Cp~g~~l~~~~C~~ 174 (242)
|++.+++ +.|.||.||+ |.+|..
T Consensus 3917 Cip~~n~-----f~CnC~~gyT--G~~Ce~ 3939 (4289)
T KOG1219|consen 3917 CIPFYNG-----FLCNCPNGYT--GKRCEA 3939 (4289)
T ss_pred EEecCCC-----eeEeCCCCcc--Cceeec
Confidence 5555554 9999999998 444443
No 86
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=70.48 E-value=5.6 Score=24.87 Aligned_cols=19 Identities=47% Similarity=1.079 Sum_probs=15.1
Q ss_pred eEecCCCcccc-CCcccCCc
Q psy13634 158 KCECPTHYTMV-NGTCMAPS 176 (242)
Q Consensus 158 ~C~Cp~g~~l~-~~~C~~~~ 176 (242)
-|.|+.||.+. +..|++++
T Consensus 34 gC~C~~G~v~~~~~~CV~~~ 53 (55)
T PF01826_consen 34 GCFCPPGYVRNDNGRCVPPS 53 (55)
T ss_dssp EEEETTTEEEETTSEEEEGG
T ss_pred cCCCCCCeeEcCCCCEEcHH
Confidence 39999999988 55887654
No 87
>PRK01742 tolB translocation protein TolB; Provisional
Probab=70.35 E-value=84 Score=28.45 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=50.6
Q ss_pred CCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeC--CCCcEEEEeccCCceEEEEcCCC-CceEEEEEeCCEE
Q psy13634 11 GGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNL--LSSSIESIDIEGRNKITIVANIE-DKPVTLTLYKSEI 86 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~--~~~~I~~~~~dG~~~~~l~~~~~-~~p~~l~v~~d~l 86 (242)
.+.|+..++++..++.+.... .-..+++.+..++|+++-. +...|..+++++...+.+..... ..-....-.+.+|
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEE
Confidence 467888888876666554333 3345677777888888743 23357778887766554432211 1112222344566
Q ss_pred EEEeCC--CCeEEEEEC
Q psy13634 87 FYSNWD--KRSIEKYDK 101 (242)
Q Consensus 87 Ywtd~~--~~~i~~~~k 101 (242)
+++... ...|+.++.
T Consensus 307 ~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEECCCCCceEEEEEC
Confidence 665432 224555543
No 88
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.58 E-value=80 Score=27.49 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=56.6
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEeCCEEE-EEeCCCCeEEEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYKSEIF-YSNWDKRSIEKYD 100 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~lY-wtd~~~~~i~~~~ 100 (242)
...+|+.++.++.||=+-.....|--.+.+|.-.+++-...+..|-+|++-++-.| -+|...+.++...
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 67899999999999999888889999999999888776666899999999876555 6666667665444
No 89
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=66.95 E-value=79 Score=28.52 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=46.0
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEecc---CCceEEEEc--C-CC-CceEEEEEeC-----CEEEEEeCCCCeEEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIE---GRNKITIVA--N-IE-DKPVTLTLYK-----SEIFYSNWDKRSIEKY 99 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~d---G~~~~~l~~--~-~~-~~p~~l~v~~-----d~lYwtd~~~~~i~~~ 99 (242)
.|.|+++|.+.++||.++... -|-+.+.+ |..++.+.. . .+ ...-||++|. +||.-++...++....
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred cceEEEEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 899999999999999999764 68888876 344553322 1 23 5678999872 5777777766655544
Q ss_pred EC
Q psy13634 100 DK 101 (242)
Q Consensus 100 ~k 101 (242)
++
T Consensus 288 ~r 289 (381)
T PF02333_consen 288 DR 289 (381)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 90
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=65.79 E-value=8.9 Score=34.69 Aligned_cols=44 Identities=5% Similarity=-0.084 Sum_probs=34.1
Q ss_pred CcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcE
Q psy13634 12 GTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSI 55 (242)
Q Consensus 12 ~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I 55 (242)
..|..++.++.+.++.-... .|.||++|+.+++||.+|.+.+.+
T Consensus 219 a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 219 AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 34555666777755554555 899999999999999999988766
No 91
>PHA02887 EGF-like protein; Provisional
Probab=65.61 E-value=4.7 Score=29.72 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.5
Q ss_pred eeEecCCCccccCCcccC
Q psy13634 157 YKCECPTHYTMVNGTCMA 174 (242)
Q Consensus 157 ~~C~Cp~g~~l~~~~C~~ 174 (242)
+.|.|+.||. |.+|..
T Consensus 108 psCrC~~GYt--G~RCE~ 123 (126)
T PHA02887 108 KFCICNKGYT--GIRCDE 123 (126)
T ss_pred ceeECCCCcc--cCCCCc
Confidence 8999999998 677754
No 92
>PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis
Probab=64.38 E-value=3.2 Score=21.98 Aligned_cols=14 Identities=50% Similarity=1.082 Sum_probs=10.9
Q ss_pred cccccCCCCCCCCceeEecCCCc
Q psy13634 143 YLCLATPGRGGGLNYKCECPTHY 165 (242)
Q Consensus 143 ~lCl~~~~~~~~~~~~C~Cp~g~ 165 (242)
|+|+. -+|.||++.
T Consensus 5 ~lcli---------iscscpt~q 18 (27)
T PF08290_consen 5 HLCLI---------ISCSCPTVQ 18 (27)
T ss_pred eeeee---------eeccCCcch
Confidence 67776 789999864
No 93
>KOG4649|consensus
Probab=62.43 E-value=22 Score=30.39 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=36.9
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEeCCEEEEEeCCCC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKR 94 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~d~lYwtd~~~~ 94 (242)
.-.-++||++++.|||-.....+||+.-+-=.+. .-|--+.+.||+.+.+++
T Consensus 32 s~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdf-----------VV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDF-----------VVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred CceEEEecCCCCcEEeehhhCceeeeeeEEECCE-----------EEEEEccCcEEEEEecch
Confidence 4456799999999999988888999875431121 334456677777777666
No 94
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=61.66 E-value=27 Score=19.72 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=25.5
Q ss_pred cCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEE
Q psy13634 41 DEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTL 81 (242)
Q Consensus 41 ~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v 81 (242)
..++||-++...+.|..++........-+.- -.+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 4678999998888888887743222111221 367888765
No 95
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.89 E-value=84 Score=27.28 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCCCcEEEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEEEEEeC-CEEEEEeCCCCeEE
Q psy13634 20 DGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYK-SEIFYSNWDKRSIE 97 (242)
Q Consensus 20 DGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~~-d~lYwtd~~~~~i~ 97 (242)
+|+...--+... .|..++.+. .+.+.+.+.....|-..|.-....+++--..-.+|++|.+-. +..+.+|... .|.
T Consensus 50 ~~s~~~fpvp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~ 127 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIG 127 (353)
T ss_pred CCccceeccCCCCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeE
Confidence 444444444444 788888887 578999999999999888754444434333458999999986 4577777665 899
Q ss_pred EEECCCCceE
Q psy13634 98 KYDKTSHTRS 107 (242)
Q Consensus 98 ~~~k~~g~~~ 107 (242)
|++..+.+.+
T Consensus 128 R~dpkt~evt 137 (353)
T COG4257 128 RLDPKTLEVT 137 (353)
T ss_pred EecCcccceE
Confidence 9987666633
No 96
>PRK01029 tolB translocation protein TolB; Provisional
Probab=58.54 E-value=1.5e+02 Score=27.06 Aligned_cols=92 Identities=8% Similarity=0.004 Sum_probs=53.2
Q ss_pred CCCcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEE--eccC---CceEEEEcCCCCc--eEEE
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESI--DIEG---RNKITIVANIEDK--PVTL 79 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~--~~dG---~~~~~l~~~~~~~--p~~l 79 (242)
..+.|+..+++|..++.|.... .....++.+..++|.|+-.. ...|... ++++ ...+.+....... -...
T Consensus 209 g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w 288 (428)
T PRK01029 209 GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF 288 (428)
T ss_pred CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE
Confidence 4689999999998888877654 44556777888888887633 2345444 3332 2223244322111 1234
Q ss_pred EEeCCEEEEEeCCCC--eEEEEEC
Q psy13634 80 TLYKSEIFYSNWDKR--SIEKYDK 101 (242)
Q Consensus 80 ~v~~d~lYwtd~~~~--~i~~~~k 101 (242)
+-.+.+|+|+....+ .|+.++.
T Consensus 289 SPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 289 SPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEEC
Confidence 445677777654332 4555553
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=57.15 E-value=7 Score=29.33 Aligned_cols=16 Identities=31% Similarity=0.739 Sum_probs=13.8
Q ss_pred eeEecCCCccccCCcccC
Q psy13634 157 YKCECPTHYTMVNGTCMA 174 (242)
Q Consensus 157 ~~C~Cp~g~~l~~~~C~~ 174 (242)
+.|.|+.||. |.+|.-
T Consensus 67 ~~CrC~~GYt--GeRCEh 82 (139)
T PHA03099 67 MYCRCSHGYT--GIRCQH 82 (139)
T ss_pred ceeECCCCcc--cccccc
Confidence 8999999998 778864
No 98
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=56.99 E-value=1.1e+02 Score=28.00 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred CcEEEEecCCCCcEEEEeCC-ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCC-CCceEEEEEeCCEEE
Q psy13634 12 GTIERSALDGTQRSVLLHKV-KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANI-EDKPVTLTLYKSEIF 87 (242)
Q Consensus 12 ~~I~ra~mDGs~~~~lv~~~-~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~-~~~p~~l~v~~d~lY 87 (242)
++|...+++...+..+++.. .-...++-+..++|-++-.. ...|..+|++|.+...|.... ....-++.-.+.+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEE
Confidence 78999999999999988864 33333444455677666443 357999999998866533221 222233556678888
Q ss_pred EEeCCCC--eEEEEECCCCc
Q psy13634 88 YSNWDKR--SIEKYDKTSHT 105 (242)
Q Consensus 88 wtd~~~~--~i~~~~k~~g~ 105 (242)
++.-..+ .|++++..++.
T Consensus 298 f~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 298 FTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred EEeCCCCCcceEEECCCCCc
Confidence 8765443 68888877655
No 99
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=54.96 E-value=1.4e+02 Score=25.59 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=46.6
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCC-ceEEE-Ec-CC--CCceEEEEEeCCEEEEEeCCCCeEEEEECCCCc-
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGR-NKITI-VA-NI--EDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHT- 105 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~-~~~~l-~~-~~--~~~p~~l~v~~d~lYwtd~~~~~i~~~~k~~g~- 105 (242)
...||+-| .++|+-+| ++++|...|...- ..+.+ +. .. +..--.|...+++||---|.+..|.++++.+|+
T Consensus 131 EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 131 EGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp S--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BE
T ss_pred cceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeE
Confidence 56788866 55666666 4777777765432 11111 22 11 345566888999999999999999999999998
Q ss_pred eEEEe
Q psy13634 106 RSVIY 110 (242)
Q Consensus 106 ~~~~~ 110 (242)
...+.
T Consensus 208 ~~~iD 212 (264)
T PF05096_consen 208 VGWID 212 (264)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 100
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=52.19 E-value=16 Score=22.47 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=18.3
Q ss_pred ccceEEEeccCCEEEEEeCCC
Q psy13634 32 KANSLTVNYDEKRVYYVNLLS 52 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~ 52 (242)
.|.||.||..++.|.|.-...
T Consensus 12 LP~gLs~d~~tG~isGtp~~~ 32 (49)
T PF05345_consen 12 LPSGLSLDPSTGTISGTPTSS 32 (49)
T ss_pred CCCcEEEeCCCCEEEeecCCC
Confidence 899999999999999985433
No 101
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=51.02 E-value=39 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEeecCCCCCCcEEEEecCCCCcEEEEeC
Q psy13634 2 LWSDWGAGNGGTIERSALDGTQRSVLLHK 30 (242)
Q Consensus 2 yWtd~g~~~~~~I~ra~mDGs~~~~lv~~ 30 (242)
||||+. .-+|+-+..-+..-++++..
T Consensus 2 FWSdQ~---~~~iq~~G~~~~~~~~v~rg 27 (85)
T PF14759_consen 2 FWSDQY---GVRIQIAGLPGGADEVVVRG 27 (85)
T ss_dssp EEEEET---TEEEEEEE-STTSSEEEEEE
T ss_pred eecccC---CCeEEEEECCCCCCEEEEEc
Confidence 999985 67999999766655555554
No 102
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=50.04 E-value=7.6 Score=22.55 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=18.4
Q ss_pred ccccCCCCCCCCceeEecCCCccccCCccc
Q psy13634 144 LCLATPGRGGGLNYKCECPTHYTMVNGTCM 173 (242)
Q Consensus 144 lCl~~~~~~~~~~~~C~Cp~g~~l~~~~C~ 173 (242)
-|+....+. ..|.|-.||+..+..|+
T Consensus 12 ~C~~~~dG~----eecrCllgyk~~~~~C~ 37 (37)
T PF12946_consen 12 GCFRYDDGS----EECRCLLGYKKVGGKCV 37 (37)
T ss_dssp EEEEETTSE----EEEEE-TTEEEETTEEE
T ss_pred ccEEcCCCC----EEEEeeCCccccCCCcC
Confidence 456656554 89999999998866674
No 103
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.76 E-value=1.8e+02 Score=25.38 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=42.8
Q ss_pred CEEEEEeCCCCcEEEEeccCCceEE-EEcCCCCceEEEEEeC-CEEEEEeCCCCeEEEEECCCCceEEEe
Q psy13634 43 KRVYYVNLLSSSIESIDIEGRNKIT-IVANIEDKPVTLTLYK-SEIFYSNWDKRSIEKYDKTSHTRSVIY 110 (242)
Q Consensus 43 ~rLYW~D~~~~~I~~~~~dG~~~~~-l~~~~~~~p~~l~v~~-d~lYwtd~~~~~i~~~~k~~g~~~~~~ 110 (242)
+++.-++.....+.+.+..-+.=+. -+...-.+|+++-|.. +.++.+|+..+.|.|.|..+-..+++.
T Consensus 244 g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 244 GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 4554455555666666554333111 1222247899999986 778888999999999987654444443
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=48.66 E-value=1.7e+02 Score=24.96 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred ccceEEEeccCCEEEEEeCCC--CcEEEEeccCCceEEEEc-CCCCceEEEEEeCCEEEEEeCCCCeEEEEECCCCc-eE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLS--SSIESIDIEGRNKITIVA-NIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHT-RS 107 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~-~~~~~p~~l~v~~d~lYwtd~~~~~i~~~~k~~g~-~~ 107 (242)
.-.||.++. .+.||=+-... +.|..++++......-.. ..--.--||++.+|.||-..|.++..+..++.+-+ ..
T Consensus 46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 456888853 57888887765 478888888654321111 11234568999999999999999999999987765 44
Q ss_pred EE
Q psy13634 108 VI 109 (242)
Q Consensus 108 ~~ 109 (242)
.+
T Consensus 125 ~~ 126 (264)
T PF05096_consen 125 TF 126 (264)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 105
>KOG0285|consensus
Probab=47.52 E-value=96 Score=27.82 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCcEEEEecCCCCcE----------EEEeCC-ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCCCCceEE
Q psy13634 10 NGGTIERSALDGTQRS----------VLLHKV-KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVT 78 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~----------~lv~~~-~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~~~~p~~ 78 (242)
.+|+|..+.||++-|. +|.... ...+|++.+.... |+.+..+.|+.-++.-..+-.-+++.......
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~--fASas~dnik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL--FASASPDNIKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh--hhccCCccceeccCCccchhhccccccceeee
Confidence 4799999999998753 233333 6778888864432 67778888988877533222123333345667
Q ss_pred EEEeCCEEEEEeCCCCeEEEEECCCC
Q psy13634 79 LTLYKSEIFYSNWDKRSIEKYDKTSH 104 (242)
Q Consensus 79 l~v~~d~lYwtd~~~~~i~~~~k~~g 104 (242)
|+++.|-+|.+-...+.|+.-+-.+|
T Consensus 366 l~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 366 LSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eeeccCceEEEcCCceEEEEEecCcC
Confidence 88888888888777777766553333
No 106
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.08 E-value=96 Score=27.00 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=45.0
Q ss_pred ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEE--------cCCCCceEEEEEeC-CEEEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIV--------ANIEDKPVTLTLYK-SEIFYS 89 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~--------~~~~~~p~~l~v~~-d~lYwt 89 (242)
...||.+|..++.|+-.......+..++.+|.-+..+. +..++++-||+... +.||-.
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 46789999999999998888888999999998765432 12368899999975 566655
No 107
>KOG1671|consensus
Probab=46.32 E-value=9.3 Score=30.95 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred cccCCccc-cccCCCCCCCCceeEecC
Q psy13634 137 ANNECDYL-CLATPGRGGGLNYKCECP 162 (242)
Q Consensus 137 ~ng~Cs~l-Cl~~~~~~~~~~~~C~Cp 162 (242)
.+|-|.|| |++.......+++.|-|-
T Consensus 149 ~igVCThLGCVp~~~AGd~gg~~CPCH 175 (210)
T KOG1671|consen 149 VIGVCTHLGCVPIANAGDYGGYYCPCH 175 (210)
T ss_pred EEeeeccccccccccccccCceecccc
Confidence 46889986 998876555556899885
No 108
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=45.36 E-value=15 Score=22.60 Aligned_cols=16 Identities=44% Similarity=1.190 Sum_probs=12.4
Q ss_pred eeEecCCCccccCCcc
Q psy13634 157 YKCECPTHYTMVNGTC 172 (242)
Q Consensus 157 ~~C~Cp~g~~l~~~~C 172 (242)
-+|.|+.||...+.+|
T Consensus 37 g~C~C~~g~~~~~~~C 52 (52)
T PF01683_consen 37 GRCQCPPGYVEVGGRC 52 (52)
T ss_pred CEeECCCCCEecCCCC
Confidence 5899999987765554
No 109
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=43.26 E-value=82 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.4
Q ss_pred ccceEEEeccCCEEEEEeCCC------CcEEEEeccCCceEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLS------SSIESIDIEGRNKITI 68 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~------~~I~~~~~dG~~~~~l 68 (242)
.+.||++ ..++.+||++.+. ..|..++.+|.-.+.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~ 127 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRF 127 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceE
Confidence 3559999 6789999999999 9999999999875544
No 110
>KOG4289|consensus
Probab=42.67 E-value=20 Score=37.64 Aligned_cols=13 Identities=54% Similarity=1.180 Sum_probs=10.9
Q ss_pred CceeEecCCCccc
Q psy13634 155 LNYKCECPTHYTM 167 (242)
Q Consensus 155 ~~~~C~Cp~g~~l 167 (242)
++|+|.||.||.-
T Consensus 1737 ~GY~C~C~~g~~G 1749 (2531)
T KOG4289|consen 1737 HGYTCECPPGYTG 1749 (2531)
T ss_pred CceeEECCCcccC
Confidence 6799999998863
No 111
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=42.57 E-value=1.6e+02 Score=25.59 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=46.3
Q ss_pred ccceEEEeccCCEEEEEeCCCCc------EEEEeccCCc----eEEE-----EcCCCC--------ceEEEEE-eCCEEE
Q psy13634 32 KANSLTVNYDEKRVYYVNLLSSS------IESIDIEGRN----KITI-----VANIED--------KPVTLTL-YKSEIF 87 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~D~~~~~------I~~~~~dG~~----~~~l-----~~~~~~--------~p~~l~v-~~d~lY 87 (242)
.-+||+.|...++ ||+=+.... +....++... ...+ +...-. .+-+|++ -++.+|
T Consensus 21 GlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred cEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 4578999875554 666444444 7777766511 1111 111112 4458998 678999
Q ss_pred EEeCCC------CeEEEEECCCCc
Q psy13634 88 YSNWDK------RSIEKYDKTSHT 105 (242)
Q Consensus 88 wtd~~~------~~i~~~~k~~g~ 105 (242)
|++... ..|.+.+.. |.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~ 122 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GR 122 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-Cc
Confidence 999999 899999976 66
No 112
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=40.12 E-value=1.7e+02 Score=26.59 Aligned_cols=85 Identities=11% Similarity=0.124 Sum_probs=56.9
Q ss_pred ecCCCCcEEEEeCC-------ccceEEEeccC------CEEEEEeCCCCcEEEEeccCCceEE---EEcCCC-CceEEEE
Q psy13634 18 ALDGTQRSVLLHKV-------KANSLTVNYDE------KRVYYVNLLSSSIESIDIEGRNKIT---IVANIE-DKPVTLT 80 (242)
Q Consensus 18 ~mDGs~~~~lv~~~-------~P~glaiD~~~------~rLYW~D~~~~~I~~~~~dG~~~~~---l~~~~~-~~p~~l~ 80 (242)
.++++....++... .|.||++=.-+ +.||-+..+.-.+.+.+.+|..+.+ .+.... ..|.+++
T Consensus 294 ~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~ 373 (399)
T COG2133 294 IPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVA 373 (399)
T ss_pred cCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceE
Confidence 44455555544432 46888885322 6788877777778889999885432 222212 5899999
Q ss_pred Ee-CCEEEEEeCC-CCeEEEEECC
Q psy13634 81 LY-KSEIFYSNWD-KRSIEKYDKT 102 (242)
Q Consensus 81 v~-~d~lYwtd~~-~~~i~~~~k~ 102 (242)
+. .+.||.+|-. .+.|+|+...
T Consensus 374 v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 374 VAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ECCCCeEEEeecCCCCeEEEecCC
Confidence 86 4788888877 6799998754
No 113
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=39.85 E-value=2.6e+02 Score=24.48 Aligned_cols=101 Identities=7% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCcEEEEecCCCCcEEEEeC-C--c---cceEEEe-ccCCEEEEEeCCC--CcEEEEeccCCceEEEEcCC--CCceEEE
Q psy13634 11 GGTIERSALDGTQRSVLLHK-V--K---ANSLTVN-YDEKRVYYVNLLS--SSIESIDIEGRNKITIVANI--EDKPVTL 79 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~lv~~-~--~---P~glaiD-~~~~rLYW~D~~~--~~I~~~~~dG~~~~~l~~~~--~~~p~~l 79 (242)
.-.|..++......++++.. . | ...+.+- .....++|.-... ..|..++.+|...+.|-.+. +..+.++
T Consensus 209 ~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~ 288 (353)
T PF00930_consen 209 RLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGW 288 (353)
T ss_dssp EEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEE
T ss_pred EEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceE
Confidence 34567777754444444433 2 2 2344432 4567777765543 57999999998866443333 2346666
Q ss_pred EEeCCEEEEEeCC----CCeEEEEECC-CCceEEEec
Q psy13634 80 TLYKSEIFYSNWD----KRSIEKYDKT-SHTRSVIYR 111 (242)
Q Consensus 80 ~v~~d~lYwtd~~----~~~i~~~~k~-~g~~~~~~~ 111 (242)
+-.++.||++-.. ...+++++.. +++.+.|..
T Consensus 289 d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 289 DEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp ECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred cCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 6667899998764 4478899877 444555543
No 114
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=39.13 E-value=1.6e+02 Score=26.69 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCCcEEEEecCCCCcEEEEeCC--ccceEEEeccCCEEEEEeCCCCcEEEEeccCCceEEEEcCC--------------C
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV--KANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANI--------------E 73 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~--~P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~~~l~~~~--------------~ 73 (242)
....++..+|+....+.|.+.. ...|..+-..+..|||.... ..+.+++++....++|..-. -
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~ 136 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC 136 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEECCcccccccceeeCCCc
Confidence 4566777777777777777654 33467777888999887643 57899999987766554321 1
Q ss_pred CceEEEEEe-CCEEEEEeCC----------CCeEEEEECCCCc-eEEEecC
Q psy13634 74 DKPVTLTLY-KSEIFYSNWD----------KRSIEKYDKTSHT-RSVIYRS 112 (242)
Q Consensus 74 ~~p~~l~v~-~d~lYwtd~~----------~~~i~~~~k~~g~-~~~~~~~ 112 (242)
..-.++.+. ++...-++|. ..+|++++..+|+ ..++...
T Consensus 137 t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 137 TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES
T ss_pred cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC
Confidence 122334332 2332223331 2368899988888 5554443
No 115
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.06 E-value=3.7e+02 Score=25.23 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCcEEEEecCCCCcEEEEeCC----ccceEEEeccCCEEEEEeCC--CCcEEEEeccCCceEEEEcCCCCceEEEEEe-
Q psy13634 10 NGGTIERSALDGTQRSVLLHKV----KANSLTVNYDEKRVYYVNLL--SSSIESIDIEGRNKITIVANIEDKPVTLTLY- 82 (242)
Q Consensus 10 ~~~~I~ra~mDGs~~~~lv~~~----~P~glaiD~~~~rLYW~D~~--~~~I~~~~~dG~~~~~l~~~~~~~p~~l~v~- 82 (242)
..++||-..-.|...+-+++-. +|. ...+|+|+.... -+.|.|++++|.+.+..-.-.--.|.-+.-.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~Pm-----IV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDG 278 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPM-----IVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDG 278 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCce-----EEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCC
Confidence 4578888887786777777653 553 236899998543 3789999999987542111001223322222
Q ss_pred -------CCEEEEEeCCCCeEEEEEC
Q psy13634 83 -------KSEIFYSNWDKRSIEKYDK 101 (242)
Q Consensus 83 -------~d~lYwtd~~~~~i~~~~k 101 (242)
++.+|--|..+.++.+.+.
T Consensus 279 krIvFq~~GdIylydP~td~lekldI 304 (668)
T COG4946 279 KRIVFQNAGDIYLYDPETDSLEKLDI 304 (668)
T ss_pred cEEEEecCCcEEEeCCCcCcceeeec
Confidence 4567777777666666653
No 116
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=35.11 E-value=2.7e+02 Score=23.40 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred ccEecCC-CCceeeEEEeCCCCEEEEEECCCCcEEEEeC
Q psy13634 200 SPYEIPN-VKNIKALDYDPVARQIYWIDSKLQAIKRASE 237 (242)
Q Consensus 200 ~~~p~~~-~~~~~~l~~d~~~~~iYw~d~~~~~I~r~~~ 237 (242)
..+|+.. .+....|+|+|.+++||-=|.+.-.++.+.+
T Consensus 210 ~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 210 VSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred eeeeeccccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 4455543 3456689999999999998887666666654
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=35.06 E-value=2.3e+02 Score=22.52 Aligned_cols=32 Identities=3% Similarity=0.039 Sum_probs=22.9
Q ss_pred CCceEE-EEEeCCEEEEEeCCCCeEEEEECCCCc
Q psy13634 73 EDKPVT-LTLYKSEIFYSNWDKRSIEKYDKTSHT 105 (242)
Q Consensus 73 ~~~p~~-l~v~~d~lYwtd~~~~~i~~~~k~~g~ 105 (242)
...+.+ ....++.||..+ ..+.|+.+++.+|+
T Consensus 201 ~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 201 ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCC
Confidence 344555 566778888888 67888888888776
No 118
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=34.06 E-value=22 Score=22.74 Aligned_cols=22 Identities=36% Similarity=1.059 Sum_probs=17.2
Q ss_pred eeEecCCCcccc-CCcccCCcee
Q psy13634 157 YKCECPTHYTMV-NGTCMAPSSF 178 (242)
Q Consensus 157 ~~C~Cp~g~~l~-~~~C~~~~~f 178 (242)
|+=.||.|+.+. +..|.+|..|
T Consensus 5 ys~~CP~~W~~~~~~~C~ap~~Y 27 (60)
T PF09717_consen 5 YSQPCPEGWILSDDGSCIAPDSY 27 (60)
T ss_pred cccccccccccCCCCeEcCCccc
Confidence 555699999966 7889998764
No 119
>KOG4260|consensus
Probab=33.54 E-value=26 Score=30.00 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=25.7
Q ss_pred cccccCcccCCc--cccccCCCCCCCCceeEecCCCcccc
Q psy13634 131 WNKCAVANNECD--YLCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 131 ~n~C~~~ng~Cs--~lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
.|.|+.....|. ++|+++.++ ++|.|.+||.-.
T Consensus 236 vnEC~~ep~~c~~~qfCvNteGS-----f~C~dk~Gy~~g 270 (350)
T KOG4260|consen 236 VNECQNEPAPCKAHQFCVNTEGS-----FKCEDKEGYKKG 270 (350)
T ss_pred HHHHhcCCCCCChhheeecCCCc-----eEecccccccCC
Confidence 577776656664 899999987 999998887654
No 120
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=31.42 E-value=3.8e+02 Score=23.87 Aligned_cols=102 Identities=10% Similarity=0.207 Sum_probs=58.5
Q ss_pred EEeecCCCCCCcEEEEecCCCCcEEEEeC----------C-ccce---EEEeccCCEEEEEeCCC---------CcEEEE
Q psy13634 2 LWSDWGAGNGGTIERSALDGTQRSVLLHK----------V-KANS---LTVNYDEKRVYYVNLLS---------SSIESI 58 (242)
Q Consensus 2 yWtd~g~~~~~~I~ra~mDGs~~~~lv~~----------~-~P~g---laiD~~~~rLYW~D~~~---------~~I~~~ 58 (242)
||+.+ .++|..+++-|...+..-.- . +|-| +|++..++|||-.=... ..|-.+
T Consensus 199 ~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 199 YFVSY----EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEBT----TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred EEEec----CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 56554 58999999999886544221 2 4655 89999999999652110 134444
Q ss_pred eccCCceEEEEcCCCCceE-EEEEeCC---EEEEEeCCCCeEEEEECCCCc-eEEE
Q psy13634 59 DIEGRNKITIVANIEDKPV-TLTLYKS---EIFYSNWDKRSIEKYDKTSHT-RSVI 109 (242)
Q Consensus 59 ~~dG~~~~~l~~~~~~~p~-~l~v~~d---~lYwtd~~~~~i~~~~k~~g~-~~~~ 109 (242)
|+. .++.+-.-.+.+|. +|++-.| .||-.+...+.+...+..+|+ .+.+
T Consensus 275 D~~--t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLK--THKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETT--TTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECC--CCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 443 33323222344444 6666543 566666666777777777777 4444
No 121
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=30.14 E-value=98 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEeCCCCcEEEEeccCCceEEEEcCC
Q psy13634 46 YYVNLLSSSIESIDIEGRNKITIVANI 72 (242)
Q Consensus 46 YW~D~~~~~I~~~~~dG~~~~~l~~~~ 72 (242)
||+|....+|+.+-..+..-++++...
T Consensus 2 FWSdQ~~~~iq~~G~~~~~~~~v~rg~ 28 (85)
T PF14759_consen 2 FWSDQYGVRIQIAGLPGGADEVVVRGD 28 (85)
T ss_dssp EEEEETTEEEEEEE-STTSSEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCCEEEEEcc
Confidence 899999999999998766555555543
No 122
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=29.67 E-value=29 Score=22.43 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=15.6
Q ss_pred eeEecCCCcccc--CCcccCCce
Q psy13634 157 YKCECPTHYTMV--NGTCMAPSS 177 (242)
Q Consensus 157 ~~C~Cp~g~~l~--~~~C~~~~~ 177 (242)
|+=.||.|+.+. +..|.+|..
T Consensus 6 Ys~~CP~~W~~~~~~~~C~ap~~ 28 (62)
T TIGR01492 6 YSSPCPENWIQKNDKYGCIAPDN 28 (62)
T ss_pred cCccCCccceecCCCCeeCCCcc
Confidence 566799999887 334998765
No 123
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=29.60 E-value=4.1e+02 Score=23.68 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEeCCCCEEEEEECCCCcEEEEeCCCcc
Q psy13634 214 DYDPVARQIYWIDSKLQAIKRASENATR 241 (242)
Q Consensus 214 ~~d~~~~~iYw~d~~~~~I~r~~~dGs~ 241 (242)
.|+..+++.||.... |.|+.+.+.|..
T Consensus 190 ~~~~~~~~~~F~Sy~-G~v~~~dlsg~~ 216 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYE-GNVYSADLSGDS 216 (342)
T ss_dssp EEETTTTEEEEEBTT-SEEEEEEETTSS
T ss_pred ceECCCCeEEEEecC-CEEEEEeccCCc
Confidence 345667788997554 889988887653
No 124
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.54 E-value=1.1e+02 Score=17.22 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=16.4
Q ss_pred EEEEeCCEEEEEeCCCCeEEEEECC
Q psy13634 78 TLTLYKSEIFYSNWDKRSIEKYDKT 102 (242)
Q Consensus 78 ~l~v~~d~lYwtd~~~~~i~~~~k~ 102 (242)
++++.++.||..+. .+.++.++..
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCC
Confidence 45888999999977 4677777643
No 125
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=28.47 E-value=29 Score=19.92 Aligned_cols=13 Identities=38% Similarity=1.114 Sum_probs=9.8
Q ss_pred ecCCCcccc-CCcc
Q psy13634 160 ECPTHYTMV-NGTC 172 (242)
Q Consensus 160 ~Cp~g~~l~-~~~C 172 (242)
.||.|+.+. +..|
T Consensus 19 ~CP~G~~~i~g~~C 32 (36)
T PF04942_consen 19 VCPSGYTVITGNGC 32 (36)
T ss_pred cCCCCCEEECCCcc
Confidence 589999887 5555
No 126
>KOG4289|consensus
Probab=24.53 E-value=54 Score=34.79 Aligned_cols=28 Identities=32% Similarity=0.723 Sum_probs=18.4
Q ss_pred cccccCcccCCccccccCCCCCCCCceeEecCCCcccc
Q psy13634 131 WNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV 168 (242)
Q Consensus 131 ~n~C~~~ng~Cs~lCl~~~~~~~~~~~~C~Cp~g~~l~ 168 (242)
.+||.+ ||.| ....++ |+|.|..||.-.
T Consensus 1244 s~pC~n-ng~C----~srEgg-----YtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1244 SGPCGN-NGRC----RSREGG-----YTCECRPGFTGE 1271 (2531)
T ss_pred cCCCCC-CCce----EEecCc-----eeEEecCCcccc
Confidence 567764 4544 444555 999999888643
No 127
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=24.29 E-value=1.6e+02 Score=17.33 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=20.3
Q ss_pred eEEEEEeCCEEEEEeCCCCeEEEEECCCC
Q psy13634 76 PVTLTLYKSEIFYSNWDKRSIEKYDKTSH 104 (242)
Q Consensus 76 p~~l~v~~d~lYwtd~~~~~i~~~~k~~g 104 (242)
..++++.++++|-+++..+ +.-++..+.
T Consensus 4 a~~v~v~g~yaYva~~~~G-l~IvDISnP 31 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNG-LVIVDISNP 31 (42)
T ss_pred EEEEEEECCEEEEEeCCCC-EEEEECCCC
Confidence 4678999999999987754 555664443
No 128
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=23.31 E-value=1.9e+02 Score=24.31 Aligned_cols=64 Identities=23% Similarity=0.461 Sum_probs=42.0
Q ss_pred eccCCEEEEEeCCCCc-EEEE-ec-----cCCceEEEEcCCCCceE---EEEEeCCEEEEEeCCCCeEEEEECCCCc
Q psy13634 39 NYDEKRVYYVNLLSSS-IESI-DI-----EGRNKITIVANIEDKPV---TLTLYKSEIFYSNWDKRSIEKYDKTSHT 105 (242)
Q Consensus 39 D~~~~rLYW~D~~~~~-I~~~-~~-----dG~~~~~l~~~~~~~p~---~l~v~~d~lYwtd~~~~~i~~~~k~~g~ 105 (242)
....+++||++..... +... ++ .+...++. .++.|+ |-.||++.||+--..+..|.+.+..+..
T Consensus 27 ~~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 27 PSDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRS 100 (250)
T ss_pred CCCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEecCCceEEEEECcCCc
Confidence 3457899999876542 2222 11 22222211 134443 5788999999999999999999988776
No 129
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=22.82 E-value=90 Score=17.88 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.0
Q ss_pred ccceEEEeccCCEEEEE
Q psy13634 32 KANSLTVNYDEKRVYYV 48 (242)
Q Consensus 32 ~P~glaiD~~~~rLYW~ 48 (242)
.|++|++|.. +.+|-+
T Consensus 14 ~~~~IavD~~-GNiYv~ 29 (38)
T PF06739_consen 14 YGNGIAVDSN-GNIYVT 29 (38)
T ss_pred eEEEEEECCC-CCEEEE
Confidence 7999999964 668865
No 130
>PF10530 Toxin_35: Toxin with inhibitor cystine knot ICK or Knottin scaffold; InterPro: IPR019553 Spider toxins of the CSTX family are ion channel toxins containing an inhibitor cystine knot (ICK) structural motif or Knottin scaffold. The four disulphide bonds present in the CSTX spider toxin family are arranged in the following pattern: 1-4, 2-5, 3-8 and 6-7. CSTX-1 is the most important component of Cupiennius salei (Wandering spider) venom in terms of relative abundance and toxicity and therefore is likely to contribute significantly to the overall toxicity of the whole venom. CSTX-1 blocked rat neuronal L-type, but no other types of HVA Cav channels []. Interestingly, the omega-toxins from Phoneutria nigriventer (Brazilian armed spider) venom (another South American species also belonging to the Ctenidae family) are included as they carry the same disulphide bond arrangement. suggested that CSTX-1 may interact with Cav channels. Calcium ion voltage channel heteromultimer containing an L-type pore-forming alpha1-subunit is the most probable candidate for the molecular target of CSTX-1 these toxins [].
Probab=22.44 E-value=61 Score=16.62 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=5.9
Q ss_pred ccccCcccCC
Q psy13634 132 NKCAVANNEC 141 (242)
Q Consensus 132 n~C~~~ng~C 141 (242)
+.|..+..||
T Consensus 6 ~sC~~dk~gC 15 (23)
T PF10530_consen 6 HSCTHDKHGC 15 (23)
T ss_pred cccccCCCCc
Confidence 4566655566
No 131
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.39 E-value=5.6e+02 Score=22.81 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=55.3
Q ss_pred CCcEEEEecCCCCcEE--EEeCC-c-cceEEEeccCCEEEEEeCCCCcEEEEeccCCce-EEEEcCCCCceEEEEE--eC
Q psy13634 11 GGTIERSALDGTQRSV--LLHKV-K-ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNK-ITIVANIEDKPVTLTL--YK 83 (242)
Q Consensus 11 ~~~I~ra~mDGs~~~~--lv~~~-~-P~glaiD~~~~rLYW~D~~~~~I~~~~~dG~~~-~~l~~~~~~~p~~l~v--~~ 83 (242)
..++... |+...++ -+... . +.++++.+..+.+|-+.. .+.|..+|+.-... .++-. -..|.++++ .+
T Consensus 15 ~~~v~vi--D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG 89 (369)
T PF02239_consen 15 SGSVAVI--DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDG 89 (369)
T ss_dssp GTEEEEE--ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE---SSEEEEEEE--TT
T ss_pred CCEEEEE--ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEec--CCCcceEEEcCCC
Confidence 3455554 4444333 33433 3 445666666778888875 46888888864442 22222 257888887 56
Q ss_pred CEEEEEeCCCCeEEEEECCCCc-eEEE
Q psy13634 84 SEIFYSNWDKRSIEKYDKTSHT-RSVI 109 (242)
Q Consensus 84 d~lYwtd~~~~~i~~~~k~~g~-~~~~ 109 (242)
.++|-+.+..+.+.-++-.+.+ .+.+
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred CEEEEEecCCCceeEeccccccceeec
Confidence 7999998888888888866665 4443
No 132
>smart00051 DSL delta serrate ligand.
Probab=21.16 E-value=83 Score=20.44 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=14.2
Q ss_pred cCCccccccCCC--CCC--CCceeEecCCCcc
Q psy13634 139 NECDYLCLATPG--RGG--GLNYKCECPTHYT 166 (242)
Q Consensus 139 g~Cs~lCl~~~~--~~~--~~~~~C~Cp~g~~ 166 (242)
..|+.+|.+... +.. +..-.|.|+.|+.
T Consensus 28 ~~C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~ 59 (63)
T smart00051 28 EGCNKFCRPRDDFFGHYTCDENGNKGCLEGWM 59 (63)
T ss_pred CccCCEeCcCccccCCccCCcCCCEecCCCCc
Confidence 367788876321 110 0113456777765
No 133
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=21.08 E-value=74 Score=17.62 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=8.9
Q ss_pred eeEecCCCcc
Q psy13634 157 YKCECPTHYT 166 (242)
Q Consensus 157 ~~C~Cp~g~~ 166 (242)
.+|.|+.||.
T Consensus 19 g~C~C~~g~~ 28 (32)
T PF07974_consen 19 GRCVCDSGYT 28 (32)
T ss_pred CEEECCCCCc
Confidence 6899999986
Done!