RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13634
(242 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 146 bits (368), Expect = 3e-40
Identities = 52/249 (20%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG I++ L+G L+ + N +T++ R+Y+V+ SI SI
Sbjct: 528 MYWTDWG--TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 585
Query: 59 DIEGRNKITIVANIEDK--PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKE 116
D+ G N+ TI+ + + P +L +++ ++F+++ +I ++ + + + +
Sbjct: 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 645
Query: 117 INDMLIYHPSRQ-TGWNKCA---VANNECDYLCLATPGRGGGLN-YKCECPTHYTMVNG- 170
DM+++H Q G N C ++N C YLCL P + C CP +
Sbjct: 646 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 705
Query: 171 -TCMAPSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKL 229
+C+ + + Q RL T V P ++ L
Sbjct: 706 RSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPV---------PDTSRLPGATPGL 756
Query: 230 QAIKRASEN 238
++ + +
Sbjct: 757 TTVEIVTMS 765
Score = 37.5 bits (86), Expect = 0.003
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 138 NNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMA----PSSFLIYAQRNILSRLITD 193
+ C LC+ G YKC+C + + T ++L + R+ +
Sbjct: 358 PDTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH---EVRKM 409
Query: 194 PTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASEN 238
+ IPN++N+ ALD + + +IYW D + I +
Sbjct: 410 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454
Score = 37.5 bits (86), Expect = 0.004
Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 9/138 (6%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHKV------KANSLTVNYDEKRVYYVNLLSSSIE 56
W + I + LD V + L V++ +Y+ + + ++
Sbjct: 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496
Query: 57 SIDIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRS-IEKYDKTSHTRSVIYRSS 113
D +G + T+ KP + + +++++W + I+K + +
Sbjct: 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556
Query: 114 EKEINDMLIYHPSRQTGW 131
+ N + + S + W
Sbjct: 557 IQWPNGITLDLLSGRLYW 574
Score = 31.7 bits (71), Expect = 0.25
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENATR 241
+++ L D + IYW DS L + A +
Sbjct: 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504
Score = 28.6 bits (63), Expect = 2.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 212 ALDYDPVARQIYWIDSKLQAIKRASENATRI 242
+ D ++ ++YW+DSKL +I N
Sbjct: 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 134 bits (339), Expect = 2e-36
Identities = 93/243 (38%), Positives = 161/243 (66%), Gaps = 10/243 (4%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVK-ANSLTVNYDEKRVYYVNLLSSSIESID 59
M W++WG I+R+A+DG++R+ L+ V AN LT++Y ++R+Y+ +L ++ IES +
Sbjct: 137 MYWTEWG--GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194
Query: 60 IEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIND 119
+ G N+ I ++ P LT Y+ I++++W +RSIE+ +KTS I + + D
Sbjct: 195 MLGLNREVIADDLPH-PFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD 253
Query: 120 MLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV--NGTCMAPSS 177
+L++H SRQ+GWN+CA +N C +LCLA P G + C CP HY++ N TC AP++
Sbjct: 254 ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG----FVCGCPAHYSLNADNRTCSAPTT 309
Query: 178 FLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
FL+++Q++ ++R++ D Q PD I +++N++A+DYDP+ +Q+YWIDS+ I++A E
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 238 NAT 240
+ +
Sbjct: 370 DGS 372
Score = 109 bits (273), Expect = 1e-27
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M +++ IER+ALDGT+R VL K +L ++ ++++ + IES
Sbjct: 446 MYFTNLQ-ERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESS 504
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
D+ G N+I + + +PV LT++++ +++ + ++ IEK D T ++ +++
Sbjct: 505 DLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLS 564
Query: 119 DMLIYHPSR--QTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV--NGTCMA 174
D+ + + CA N C ++CL +C CP H ++ +C
Sbjct: 565 DIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGT----TRCSCPMHLVLLQDELSCGG 620
Query: 175 P 175
Sbjct: 621 T 621
Score = 55.2 bits (132), Expect = 5e-09
Identities = 22/143 (15%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLL--------HKVKANSLTVNYDEKRVYYVNLLS 52
+ W D I ++ DG+Q ++ +++ L+++ + +Y+ +
Sbjct: 354 LYWIDS---RQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEAT 410
Query: 53 SSIESIDIEGRNKITIVANIEDKPVTLTLYKSE--IFYSNWDKRS--IEKYDKTSHTRSV 108
+ I ++GR+ ++ +D+P + + + ++++N +RS IE+ R V
Sbjct: 411 NVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV 470
Query: 109 IYRSSEKEINDMLIYHPSRQTGW 131
++ S + + + + W
Sbjct: 471 LFFSGLSKPIALALDSRLGKLFW 493
Score = 51.3 bits (122), Expect = 9e-08
Identities = 24/137 (17%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+D + TI R+ ++G+ ++ + V++ K +Y+ + ++ IE
Sbjct: 51 IYWTDI---SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS 107
Query: 59 DIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRS-IEKYDKTSHTRSVIYRSSEK 115
++G+++ +V D P L L + ++++ W + I++ R+ + +
Sbjct: 108 KLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVG 166
Query: 116 EINDMLIYHPSRQTGWN 132
N + I + R+ W
Sbjct: 167 RANGLTIDYAKRRLYWT 183
Score = 51.3 bits (122), Expect = 9e-08
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
P +FL++++R + R+ + + + VK ALD+D +IYW D L+ I R
Sbjct: 5 PEAFLLFSRRADIRRISLETNN-NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 235 ASENATRI 242
A N + +
Sbjct: 64 AFMNGSAL 71
Score = 45.2 bits (106), Expect = 1e-05
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 10 NGGTIERSALDGTQRSVLL---HKVKANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKI 66
I R +L+ +V + +A++L + + R+Y+ ++ +I + G
Sbjct: 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE 72
Query: 67 TIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRS 112
+V D P + + +++++ IE R V+
Sbjct: 73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120
Score = 37.5 bits (86), Expect = 0.003
Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLL----HKVKANSLTVNYDEKRVYYVNLLSSSIE 56
+ I R +D Q ++ ++ + +K++Y+++ + I
Sbjct: 306 APTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIR 365
Query: 57 SIDIEGRNKITIVA------NIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSV 108
+G T+V N+E +P L++ Y I+++ I + V
Sbjct: 366 KAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGV 425
Query: 109 IYRSSEKEINDMLIYHPSR 127
+ + + ++ +P +
Sbjct: 426 VLKGEQDRPRA-VVVNPEK 443
Score = 32.9 bits (74), Expect = 0.087
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENATR 241
+ + + D + + +YW D+ I+ + +
Sbjct: 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113
Score = 27.5 bits (60), Expect = 4.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
+ AL D +++W DS L+ I+ +
Sbjct: 475 GLSKPIALALDSRLGKLFWADSDLRRIESS 504
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 125 bits (315), Expect = 3e-33
Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 5/243 (2%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ + + I
Sbjct: 141 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+++G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 199 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 258
Query: 119 DMLIYHPSRQTGW-NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSS 177
D+ + RQ N C + N C +LCL +P + +
Sbjct: 259 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318
Query: 178 FLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
L+ A+R L R+ D D ++ ++++ A+DYDPV IYW D +++AI+R+
Sbjct: 319 LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI 378
Query: 238 NAT 240
+ +
Sbjct: 379 DGS 381
Score = 119 bits (298), Expect = 6e-31
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG IER+ALDG+ R VL++ N L ++YDE ++Y+ + + IE +
Sbjct: 449 MYWTDWG--EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+ +G + +V + TL +++++W +RSIE+ K S R VI ++
Sbjct: 507 NTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVI-IDQLPDLM 565
Query: 119 DMLIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG--TCMAP 175
+ + R G N CA N C +LCL P +C CP + +++ TC+ P
Sbjct: 566 GLKATNVHRVIGSNPCAEENGGCSHLCLYRPQ-----GLRCACPIGFELISDMKTCIVP 619
Score = 49.4 bits (117), Expect = 4e-07
Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+D I RS +DG+ ++ + + V++ + +Y+ + + IE
Sbjct: 363 IYWTDD---EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSE--IFYSNWDK-RSIEKYDKTSHTRSVIYRSSEK 115
+ G + +++ ++P + L +++++W + IE+ R V+ +S
Sbjct: 420 RLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG 479
Query: 116 EINDMLIYHPSRQTGW 131
N + + + + W
Sbjct: 480 WPNGLALDYDEGKIYW 495
Score = 48.3 bits (114), Expect = 9e-07
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 171 TCMAPSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQ 230
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +
Sbjct: 4 HHHHHAPLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Query: 231 AIKRAS 236
AIKR
Sbjct: 63 AIKRTE 68
Score = 47.9 bits (113), Expect = 1e-06
Identities = 22/138 (15%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK---VKANSLTVNYDEKRVYYVNLLSSSIES 57
+ WSD I+R+ + T+ + + + L ++ +++Y+ + ++ IE
Sbjct: 54 IYWSDVS---EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEV 110
Query: 58 IDIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNW-DKRSIEKYDKTSHTRSVIYRSSE 114
+++G + + D+P + L +++++W + IE+ +R +I S
Sbjct: 111 SNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170
Query: 115 KEINDMLIYHPSRQTGWN 132
N + + + ++ W
Sbjct: 171 YWPNGLTLDYEEQKLYWA 188
Score = 34.0 bits (77), Expect = 0.041
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENATR 241
+ + L D + ++YW DS+ I+ ++ + +
Sbjct: 82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117
Score = 28.6 bits (63), Expect = 2.1
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENATRI 242
++ L D +IYW D+K I+ + + T
Sbjct: 477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 121 bits (304), Expect = 1e-32
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+DWG N IE S++DG+ R ++ N LT++Y +R+Y+V+ IE
Sbjct: 216 IYWTDWG--NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+++G ++ +++ P +T+++ +++++W +SI +K + I R+
Sbjct: 274 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPM 333
Query: 119 DMLIYHPS-RQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG-TCM 173
D+ HP + G N+C N C +LCL + NY C CPT + +N C
Sbjct: 334 DIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ-----NYTCACPTGFRKINSHACA 385
Score = 49.4 bits (117), Expect = 3e-07
Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESIDI 60
W I R+ L+G+ ++ L V++ ++Y+ + +S IE ++
Sbjct: 129 LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188
Query: 61 EGRNKITIVANIEDKPVTLTLYKSE--IFYSNW-DKRSIEKYDKTSHTRSVIYRSSEKEI 117
+G ++ ++ +KP + L+ E I++++W + IE R +I +
Sbjct: 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 248
Query: 118 NDMLIYHPSRQ 128
N + I + R+
Sbjct: 249 NGLTIDYAGRR 259
Score = 47.1 bits (111), Expect = 2e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 138 NNECDYLCLATPGRGGGLNYKCECPTHYTMV-NGTCMAPSSFLIYAQRNILSRLITDPTQ 196
C C + G ++C C Y + + +
Sbjct: 50 EGYCSQGCTNSEG-----AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 104
Query: 197 CPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENAT 240
+ + N++N ALD+ ++W D L I RA+ N +
Sbjct: 105 RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 148
Score = 31.7 bits (71), Expect = 0.22
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENAT 240
+++ L D V ++YW DS I+ A+ +
Sbjct: 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191
Score = 29.7 bits (66), Expect = 0.90
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
++ L D R++YW+D+K I+RA
Sbjct: 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 123 bits (310), Expect = 2e-32
Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG I++ L+G L+ + N +T++ R+Y+V+ SI SI
Sbjct: 510 MYWTDWG--TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567
Query: 59 DIEGRNKITIVANIED--KPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKE 116
D+ G N+ TI+ + + P +L +++ ++F+++ +I ++ + + + +
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 627
Query: 117 INDMLIYHPSRQTGWN----KCAVANNECDYLCLATPGRGGGLN-YKCECPTHYTMV--N 169
DM+++H Q + ++N C YLCL P + C CP +
Sbjct: 628 PEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 687
Query: 170 GTCMAPSS 177
+C+ +
Sbjct: 688 RSCLTEAE 695
Score = 37.1 bits (85), Expect = 0.005
Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 9/138 (6%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHKV------KANSLTVNYDEKRVYYVNLLSSSIE 56
W + I + LD V + L V++ +Y+ + + ++
Sbjct: 419 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478
Query: 57 SIDIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRS-IEKYDKTSHTRSVIYRSS 113
D +G + T+ KP + + +++++W + I+K + +
Sbjct: 479 VADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538
Query: 114 EKEINDMLIYHPSRQTGW 131
+ N + + S + W
Sbjct: 539 IQWPNGITLDLLSGRLYW 556
Score = 36.3 bits (83), Expect = 0.007
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 130 GWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC----MAPSSFLIYAQRN 185
+C + D + YKC+C + + T + ++L + R+
Sbjct: 327 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Query: 186 ILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASEN 238
+ + IPN++N+ ALD + + +IYW D + I +
Sbjct: 387 ---EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436
Score = 33.2 bits (75), Expect = 0.063
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 9/120 (7%)
Query: 131 WNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPS-------SFLIYAQ 183
K A YL + T +A +
Sbjct: 367 HTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS 426
Query: 184 RNILSRLITDPTQCPDSPYEI--PNVKNIKALDYDPVARQIYWIDSKLQAIKRASENATR 241
+ ++ D S + +++ L D + IYW DS L + A +
Sbjct: 427 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486
Score = 29.0 bits (64), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236
N++ + D ++ ++YW+DSKL +I
Sbjct: 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSID 568
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 116 bits (292), Expect = 2e-31
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG IER+ +DG+ R ++++ N LT++Y+E+++Y+ + + I
Sbjct: 136 MYWTDWG--EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+++G N+ +V P LTL++ +++++W SI +K + S
Sbjct: 194 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM 253
Query: 119 DMLIYHPSRQT-GWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG--TCMAP 175
D+ + RQ N C + N C +LCL +P + Y+C CPT ++ TC
Sbjct: 254 DIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---YQCACPTGVKLLENGKTCKDG 310
Query: 176 SS 177
+S
Sbjct: 311 NS 312
Score = 48.5 bits (115), Expect = 6e-07
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 175 PSSFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
+ L+YA R L RL+ ++ + +++ A+D+ IYW D +AIKR
Sbjct: 3 SAPLLLYANRRDL-RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKR 61
Query: 235 ASENAT 240
N T
Sbjct: 62 TEFNKT 67
Score = 45.8 bits (108), Expect = 4e-06
Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHK---VKANSLTVNYDEKRVYYVNLLSSSIESID 59
WSD I+R+ + T+ + + + L ++ +++Y+ + ++ IE +
Sbjct: 51 WSDVSEE---AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 107
Query: 60 IEGRNKITIVANIEDKPVTLTLYKSE--IFYSNW-DKRSIEKYDKTSHTRSVIYRSSEKE 116
++G + + D+P + L S +++++W + IE+ +R +I S
Sbjct: 108 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167
Query: 117 INDMLI 122
N + +
Sbjct: 168 PNGLTL 173
Score = 36.2 bits (83), Expect = 0.007
Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 55/239 (23%)
Query: 10 NGGTIERSALDG--TQRSVLLHKVK-ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKI 66
N + ++++ ++ A ++ + +Y+ ++ +I+ + +
Sbjct: 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70
Query: 67 -TIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLIY 123
+V + P L ++++++ + IE + R V++ + +
Sbjct: 71 QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA-IAL 129
Query: 124 HPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQ 183
PS ++ G + ++G+
Sbjct: 130 DPSS--------------GFMYWTDWGEVPKI--------ERAGMDGS------------ 155
Query: 184 RNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENATRI 242
+S PN L D +++YW D+KL I +++ + T
Sbjct: 156 ---------SRFIIINSEIYWPN-----GLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 114 bits (285), Expect = 3e-30
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+DWG N IE S++DG+ R ++ N LT++Y +R+Y+V+ IE
Sbjct: 173 IYWTDWG--NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+++G ++ +++ P +T+++ +++++W +SI +K + I R+
Sbjct: 231 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPM 290
Query: 119 DMLIYHPSRQ-TGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG-TCMAPS 176
D+ HP RQ G N+C N C +LCL + NY C CPT + +N C
Sbjct: 291 DIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ-----NYTCACPTGFRKINSHACALEV 345
Query: 177 SF 178
F
Sbjct: 346 LF 347
Score = 52.2 bits (124), Expect = 4e-08
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 7/110 (6%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NGTCMAPSSFLIYAQRNILSRL 190
N+CA C C + G ++C C Y + + +
Sbjct: 2 NECA-EEGYCSQGCTNSEG-----AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Query: 191 ITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASENAT 240
+ + N++N ALD+ ++W D L I RA+ N +
Sbjct: 56 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105
Score = 49.1 bits (116), Expect = 3e-07
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ WSD I R+ L+G+ ++ L V++ ++Y+ + +S IE
Sbjct: 87 VFWSDVTLDR---ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSE--IFYSNW-DKRSIEKYDKTSHTRSVIYRSSEK 115
+++G ++ ++ +KP + L+ E I++++W + IE R +I +
Sbjct: 144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 203
Query: 116 EINDMLIYHPSRQTGW 131
N + I + R+ W
Sbjct: 204 WPNGLTIDYAGRRMYW 219
Score = 28.3 bits (62), Expect = 2.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENATRI 242
++ L D R++YW+D+K I+RA+ + +
Sbjct: 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 237
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 114 bits (287), Expect = 4e-30
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG I++ L+G L+ + N +T++ R+Y+V+ SI SI
Sbjct: 216 MYWTDWG--TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 273
Query: 59 DIEGRNKITIVANIEDK--PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKE 116
D+ G N+ TI+ + + P +L +++ ++F+++ +I ++ + + + +
Sbjct: 274 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333
Query: 117 INDMLIYHPSRQT-GWNKC---AVANNECDYLCLATPGRGGGLN-YKCECPTHYTMV--N 169
DM+++H Q G N C ++N C YLCL P + C CP +
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 170 GTCMAPS 176
+C+ +
Sbjct: 394 RSCLTEA 400
Score = 39.8 bits (92), Expect = 5e-04
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCM----APSSFLIYAQRNIL 187
++C + C LC+ G YKC+C + + T ++L + R+ +
Sbjct: 41 DECQD-PDTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 94
Query: 188 SRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRASEN 238
+ + IPN++N+ ALD + + +IYW D + I +
Sbjct: 95 RK---MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 142
Score = 37.9 bits (87), Expect = 0.002
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
N+C N C ++C Y+C CP + +V
Sbjct: 1 NECLDNNGGCSHVCNDLKI-----GYECLCPDGFQLVAQRR 36
Score = 37.1 bits (85), Expect = 0.004
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV------KANSLTVNYDEKRVYYVNLLSSS 54
+ WSD + I + LD V + L V++ +Y+ + + +
Sbjct: 126 IYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 182
Query: 55 IESIDIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNW-DKRSIEKYDKTSHTRSVIYR 111
+ D +G + T+ KP + + +++++W I+K +
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242
Query: 112 SSEKEINDMLIYHPSRQTGW 131
+ + N + + S + W
Sbjct: 243 ENIQWPNGITLDLLSGRLYW 262
Score = 30.2 bits (67), Expect = 0.62
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
N++ + D ++ ++YW+DSKL +I
Sbjct: 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSI 273
Score = 26.3 bits (57), Expect = 9.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQA-IKRAS 236
N +A+ DPV +YW D A IK+
Sbjct: 200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 112 bits (280), Expect = 1e-29
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
M W+DWG I++ L+G L+ + N +T++ R+Y+V+ SI SI
Sbjct: 134 MYWTDWG--TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191
Query: 59 DIEGRNKITIVANIEDK--PVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKE 116
D+ G N+ TI+ + + P +L +++ ++F+++ +I ++ + + + +
Sbjct: 192 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 251
Query: 117 INDMLIYHPSRQT-GWNKCA---VANNECDYLCLATPGRGGGLN-YKCECPTHYTMV--N 169
DM+++H Q G N C ++N C YLCL P + C CP +
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 170 GTCM 173
+C+
Sbjct: 312 RSCL 315
Score = 48.9 bits (116), Expect = 4e-07
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKV------KANSLTVNYDEKRVYYVNLLSSS 54
+ WSD + I + LD V + L V++ +Y+ + + +
Sbjct: 44 IYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 100
Query: 55 IESIDIEGRNKITIVANIEDKPVTLTLYKSE--IFYSNW-DKRSIEKYDKTSHTRSVIYR 111
+ D +G + T+ KP + + +++++W I+K +
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160
Query: 112 SSEKEINDMLIYHPSRQTGW 131
+ + N + + S + W
Sbjct: 161 ENIQWPNGITLDLLSGRLYW 180
Score = 47.0 bits (111), Expect = 2e-06
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 177 SFLIYAQRNILSRLITDPTQCPDSPYE--IPNVKNIKALDYDPVARQIYWIDSKLQAIKR 234
++L + R+ + ++ D S Y IPN++N+ ALD + + +IYW D + I
Sbjct: 2 AYLFFTNRHEVRKMTLD-----RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 235 AS 236
Sbjct: 57 TQ 58
Score = 42.7 bits (100), Expect = 4e-05
Identities = 34/239 (14%), Positives = 88/239 (36%), Gaps = 23/239 (9%)
Query: 10 NGGTIERSALDGTQRSVLLHKVK-ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITI 68
N + + LD ++ + L+ ++ +L R+Y+ +L I S ++ + ++
Sbjct: 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67
Query: 69 VANIED----KPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLI 122
+ P L + S I++++ ++ D R ++R + + +++
Sbjct: 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127
Query: 123 YHPSRQTGWNKCAVANNECDYLCLATPGRGG--GLNYKCECPTHYTMVNGTCMAPSSFLI 180
W D+ A +GG G++ + NG + S +
Sbjct: 128 DPVHGFMYW---------TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 178
Query: 181 Y---AQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236
Y ++ + +S + + + + + +L +++W D +AI A+
Sbjct: 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235
Score = 33.1 bits (75), Expect = 0.056
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRASENAT 240
+++ L D + IYW DS L + A
Sbjct: 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 94.5 bits (235), Expect = 2e-23
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+DW N IE S +DGT R +L N LT + ++ +V+ + E +
Sbjct: 136 LYWTDWNRDNPK-IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDK-TSHTRSVIYRSSEKEI 117
+ + ++ + P +T Y ++Y++W S+ D S + + +
Sbjct: 195 NPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253
Query: 118 NDMLIYHPSRQTG 130
+ I G
Sbjct: 254 YGITIALSQCPQG 266
Score = 52.9 bits (127), Expect = 1e-08
Identities = 18/132 (13%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYYVNLLSSSIESIDI 60
W+D +I R++L G + + ++ + + +++ + +++ + IE +
Sbjct: 52 WTDISEP---SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108
Query: 61 EGRNKITIVANIEDKPVTLTLYKSE--IFYSNW--DKRSIEKYDKTSHTRSVIYRSSEKE 116
+G + + P + +++++W D IE R ++ + +
Sbjct: 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168
Query: 117 INDMLIYHPSRQ 128
N + S Q
Sbjct: 169 PNGLTFDAFSSQ 180
Score = 51.8 bits (124), Expect = 3e-08
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 177 SFLIYAQRNILSRLITDP---TQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIK 233
+ L++AQ + RL + + + K I L +D V + +YW D +I
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 234 RASENAT 240
RAS +
Sbjct: 62 RASLHGG 68
Score = 51.0 bits (122), Expect = 6e-08
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 3 WSDWGAGNGGTIERSALDGTQRSVLLHK--VKANSLTVNYDEKRVYY--VNLLSSSIESI 58
W+D IE + +DGTQR VL V + + +Y+ N + IE+
Sbjct: 95 WTDSQ---LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151
Query: 59 DIEGRNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRS 112
++G N+ + + P LT + S++ + + E + R +
Sbjct: 152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207
Score = 44.8 bits (106), Expect = 7e-06
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 10 NGGTIERSALDGTQRSVLLHKV-------KANSLTVNYDEKRVYYVNLLSSSIESIDIEG 62
G IER L+ K L + +K VY+ ++ SI + G
Sbjct: 8 QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG 67
Query: 63 RNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDM 120
TI+ P + L IF+++ IE R V++ + +
Sbjct: 68 GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 121 LIYHPSR 127
+ P R
Sbjct: 128 VT-DPVR 133
Score = 34.0 bits (78), Expect = 0.028
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 205 PNVKNIKALDYDPVARQIYWIDSKLQAIKRASENAT 240
++ + + + D + R I+W DS+L I+ A + T
Sbjct: 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111
Score = 29.4 bits (66), Expect = 0.85
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 206 NVKNIKALDYDPVARQIYWIDSKLQAIKRA 235
N+ L +D + Q+ W+D+ +
Sbjct: 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 51.6 bits (123), Expect = 4e-08
Identities = 9/111 (8%), Positives = 32/111 (28%), Gaps = 9/111 (8%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSS-IESID 59
+ + D I ++ VL +AN N ++Y + + +
Sbjct: 198 VYYMDVN--RDNAIVHVNINNPNPVVL---TEANIEHYNVYGSLIFYQRGGDNPALCVVK 252
Query: 60 IEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIY 110
+G + + + + + ++++++ +
Sbjct: 253 NDGTGFKELA---KGEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 47.4 bits (112), Expect = 1e-06
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDI 60
+ + + ++ R +DG ++ + T N ++ YY N + + D
Sbjct: 118 IYYLHYDTQTATSLYRIRIDGEEKKKI---KNHYLFTCNTSDRYFYYNNPKNGQLYRYDT 174
Query: 61 EGRNKITIVANIEDKPVTLTLYKSEIFYSNW-DKRSIEKYDKTSHTRSVIYRSSEKEIN 118
+++ KPV L + ++Y + +I + + V+ ++ + N
Sbjct: 175 ASQSEALFYDCNCYKPV--VLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYN 231
Score = 33.9 bits (77), Expect = 0.034
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 41 DEKRVYYVNL-LSSSIESIDIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKY 99
+ V++ N + + +++I+G N + D + + K+ ++Y + + I
Sbjct: 24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKL---SNDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 100 DKTSHTRSVIYR-----SSEKEINDMLIYHPSRQTGW 131
S+ R+ + R ++ + S +
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNY 117
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 37.4 bits (87), Expect = 2e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYTM-VNG-TCMAPSSF 178
C N C+ C G C C Y++ +G +C +
Sbjct: 2 CVNENGGCEQYCSDHTGTK----RSCRCHEGYSLLADGVSCTPTVEY 44
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 36.7 bits (85), Expect = 4e-04
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYTM-VNG-TCMAPSSF 178
C + N C+ C + C C Y + N +C F
Sbjct: 2 CNIKNGRCEQFCKNSADNK----VVCSCTEGYRLAENQKSCEPAVPF 44
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 36.7 bits (85), Expect = 4e-04
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM-VNG-TCMAPSSF 178
C N C+ C G C C Y++ +G +C +
Sbjct: 6 LICVNENGGCEQYCSDHTGTK----RSCRCHEGYSLLADGVSCTPTVEY 50
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 35.4 bits (82), Expect = 9e-04
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYTM-VNG-TCMAPSSF 178
C++ N CD C +C C Y + + +C++ F
Sbjct: 1 CSLDNGGCDQFCREERSE-----VRCSCAHGYVLGDDSKSCVSTERF 42
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 35.0 bits (81), Expect = 0.004
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN-GTC 172
N+C N C Y+C Y+C CP + +V C
Sbjct: 30 NECLDNNGGCSYVCNDLKI-----GYECLCPDGFQLVAQRRC 66
Score = 28.4 bits (64), Expect = 0.69
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM 167
++C + C LC+ G YKC+C + +
Sbjct: 70 DECQD-PDTCSQLCVNLEGG-----YKCQCEEGFQL 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 76/223 (34%)
Query: 34 NSLTVNYDEKRVYYVNLLSSSIESID-IEGRN---KITIVANIEDKPVTLTLYKSEIFYS 89
N VN D+ ++ SS+ ++ E R ++++ + L + +
Sbjct: 346 NWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILL--SLIWF 397
Query: 90 NWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATP 149
+ K + H S++ EK+ + I PS
Sbjct: 398 DVIKSDVMVVVNKLHKYSLV----EKQPKESTISIPSIY--------------------- 432
Query: 150 GRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQCPDSPYEIPNV-- 207
L K + Y + R+I+ + + DS IP
Sbjct: 433 -----LELKVKLENEYAL---------------HRSIVDHY--NIPKTFDSDDLIPPYLD 470
Query: 208 -----------KNIKALDYDPVARQIY----WIDSKLQAIKRA 235
KNI+ + + R ++ +++ K++ A
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Score = 32.1 bits (72), Expect = 0.17
Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 44/231 (19%)
Query: 21 GTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLT 80
G+ ++ + V + + +++++NL + P T+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNL-----------KN---------CNSPETV- 198
Query: 81 LYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLIYHPSRQTG-------WNK 133
L + D + D +S+ + I S + L+ + N
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 134 CAVA--NNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQRNILSRLI 191
A N C L L T + TH ++ + + +++L + +
Sbjct: 257 KAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDH----HSMTLTPDEVKSLLLKYL 311
Query: 192 TDPTQCPDSPYEI----P-NVKNIKALDYDPVARQIYWIDSKLQAIKRASE 237
Q D P E+ P + I D +A W + E
Sbjct: 312 DCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 32.4 bits (74), Expect = 0.014
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYTM-VNG-TCMAPSSF 178
C++ N +CD C C C YT+ NG C+ +
Sbjct: 4 CSLDNGDCDQFCHEEQNS-----VVCSCARGYTLADNGKACIPTGPY 45
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 32.2 bits (74), Expect = 0.025
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV-NGTC 172
++C+V N + C G ++C C + TC
Sbjct: 45 DECSVGNPCGNGTCKNVIG-----GFECTCEEGFEPGPMMTC 81
Score = 31.8 bits (73), Expect = 0.038
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
++C + C+ T G +Y+CECP Y + C
Sbjct: 6 DECKEPDVCKHGQCINTDG-----SYRCECPFGYILAGNEC 41
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 31.2 bits (71), Expect = 0.12
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG-TC 172
+ C C CECP Y + +G C
Sbjct: 42 CQMFCNQTACPADCDPNTQ------ASCECPEGYILDDGFIC 77
Score = 28.9 bits (65), Expect = 0.68
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
++C C +C PG ++C C +
Sbjct: 81 DECE-NGGFCSGVCHNLPGT-----FECICGPDSALAGQIG 115
Score = 27.3 bits (61), Expect = 2.3
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 6/37 (16%)
Query: 137 ANNECDYLCL-ATPGRGGGLNYKCECPTHYTMVNGTC 172
C+Y C +Y C C + +
Sbjct: 8 FRANCEYQCQPLDQT-----SYLCVCAEGFAPIPHEP 39
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 31.3 bits (71), Expect = 0.12
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 134 CAVANNECDY--LCLATPGRGGGLNYKCECPTHYTMVNGTC 172
C+ ++CD +C T G +Y C C + +G
Sbjct: 99 CSSGQHQCDSSTVCFNTVG-----SYSCRCRPGWKPRHGIP 134
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 31.2 bits (71), Expect = 0.16
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
N+C C+ TPG +Y C+CP + +
Sbjct: 4 NECLDPTTCISGNCVNTPG-----SYICDCPPDFELNPTRV 39
Score = 28.5 bits (64), Expect = 1.2
Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 5/35 (14%)
Query: 138 NNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
N D G + C + +C
Sbjct: 48 NCYLDIRPRGDNG-----DTACSNEIGVGVSKASC 77
Score = 26.6 bits (59), Expect = 5.2
Identities = 3/35 (8%), Positives = 6/35 (17%), Gaps = 5/35 (14%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYT 166
K E + + C +
Sbjct: 82 GKAWGTPCEMCPAVNTSEYK-----ILCPGGEGFR 111
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 132 NKCAVANNECD-YLCLATPGRGGGLNYKCECPTHYTM 167
++C C C+ T G +++C CPT Y +
Sbjct: 123 DECQELPGLCQGGKCINTFG-----SFQCRCPTGYYL 154
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold,
PSI, protein structure initiative; 1.70A {Escherichia
coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Length = 215
Score = 31.2 bits (70), Expect = 0.20
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 4 SDWGAGNGGTIERSALDGTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDIEGR 63
SDW G ++ G V K A+ T + E + YY ++ IE I IE
Sbjct: 55 SDW-DGVWQSVYPLLQSGKLDPVFQKKADADK-TKTFAEIKDYYHKGYATDIEMIGIED- 111
Query: 64 NKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKE 116
+ N E Y D I Y ++ + E
Sbjct: 112 GIVEFHRNNETTSCK---YDY-------DGYKILTYKSGKKGVRYLFECKDPE 154
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 29.7 bits (67), Expect = 0.34
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN 169
C++ N C + CL G +C C Y + +
Sbjct: 55 LNCSLDNGGCTHYCLEEVG-----WRRCSCAPGYKLGD 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.69
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 66 ITIVANIEDKPVTLTL-------------YKSEIFYSNWDKRSI-EKYDK--TSHTRSVI 109
+I+ + + PV LT+ Y + IF + D + EK K H+ S
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 110 YRSSEKEIN 118
+RS + ++
Sbjct: 1719 FRSEKGLLS 1727
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 174 AP--SSFLIYAQRNILSRLITDPTQCPDSPYEIPNV------KNIKALDYD---PVARQI 222
+P S L+ A I L+ + +IP V +++ L + I
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCI 483
Query: 223 -----YW 224
W
Sbjct: 484 IRLPVKW 490
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 29.4 bits (66), Expect = 1.2
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 8 AGNGGTIERSALDGTQRSVLLHKVKA--------NSLTVNYDEKRVYYVNLLSSSIESID 59
VL + ++T D + NL+ +SI ++
Sbjct: 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204
Query: 60 IEGRNKITIVANIE--DKPVTLTLYK--SEIFYSNWDKRSIEKYDKTSHTRSVI 109
+ IT++ + + P T+ + + S ++ + +++ S T S +
Sbjct: 205 TQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.5 bits (64), Expect = 1.4
Identities = 7/58 (12%), Positives = 10/58 (17%), Gaps = 18/58 (31%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLN------------------YKCECPTHYTMVNGT 171
K D C + C Y+ + GT
Sbjct: 45 IKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGT 102
Score = 26.2 bits (58), Expect = 7.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 134 CAVANNECDY-LCLATPGRGGGLNYKCECPTHYTM-VNG-TCM 173
C V C LC+ T G ++KC+CP+ T+ G C+
Sbjct: 110 CEVFPGVCKNGLCVNTRG-----SFKCQCPSGMTLDATGRICL 147
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.4 bits (60), Expect = 1.7
Identities = 9/41 (21%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 132 NKCAVANNECDY--LCLATPGRGGGLNYKCECPTHYTMVNG 170
C N CD C G CEC +
Sbjct: 47 PTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLF 87
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 26.3 bits (58), Expect = 1.9
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMA 174
+ +C +LC G Y C C Y + +C A
Sbjct: 13 SGEEDPQPQCQHLCHNYVGG-----YFCSCRPGYELQEDRHSCQA 52
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 26.9 bits (60), Expect = 1.9
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 132 NKCAVANNECDY-LCLATPGRGGGLNYKCECPTHYT 166
++C ++ + C C+ TPG +++C+C Y
Sbjct: 4 DECRISPDLCGRGQCVNTPG-----DFECKCDEGYE 34
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 132 NKCAVANNECDY-LCLATPGRGGGLNYKCECPTHYTM 167
++C C +C T G +Y+CECP + +
Sbjct: 47 DECQRDPLLCRGGVCHNTEG-----SYRCECPPGHQL 78
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron
transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB:
1uat_A
Length = 129
Score = 27.4 bits (60), Expect = 2.2
Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 8/122 (6%)
Query: 57 SIDIEGR-----NKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYR 111
+ + +I T+ + K++ V
Sbjct: 4 ETTVTSGDTMTYSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVL-AKSADVGDVAKE 62
Query: 112 SSEKEINDMLIYHPSRQTGWNKCAVANNECDYLCLATP--GRGGGLNYKCECPTHYTMVN 169
+ ++ + ++ + E + + Y C P H++M+
Sbjct: 63 GAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFSMMR 122
Query: 170 GT 171
GT
Sbjct: 123 GT 124
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 28.2 bits (63), Expect = 2.6
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 9 GNGGTIERSALDGTQRSVLLHKVK---ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNK 65
+ +D ++L KV + ++ N Y + + + ID +
Sbjct: 250 SKAAEV--LVVDTRNGNIL-AKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-- 304
Query: 66 ITIVANIE--DKPVTLTLYK--SEIFYSNWDKRSIEKYDKTSHT 105
+V + P +L L ++ S K + ++
Sbjct: 305 -KVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDD 347
Score = 27.4 bits (61), Expect = 4.2
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 9 GNGGTIERSALDGTQRSVLLHKVK----ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRN 64
G + S +D V+ NSL ++ D K +Y S+ + + +
Sbjct: 291 RQAGKV--SVIDAKSYKVV-KTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDD 347
Query: 65 KITI 68
I I
Sbjct: 348 VIRI 351
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 26.5 bits (59), Expect = 2.9
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 137 ANNECDYLCLATPGRGGGLNYKCECPTH 164
+ N C LC+ PG Y C C
Sbjct: 49 SENMCAQLCVNYPG-----GYTCYCDGK 71
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 132 NKCAVANNECDY-LCLATPGRGGGLNYKCECPTHYT 166
++C++ + C +C PG +++CECP Y
Sbjct: 4 DECSLKPSICGTAVCKNIPG-----DFECECPEGYR 34
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 26.9 bits (60), Expect = 3.3
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 129 TGWNKCAVANNECDYLCLATPGRGGGL------NYKCECPTHYTMVN 169
G N C + + C G + C C YT+ +
Sbjct: 72 EGKN-CELFTRKL---CSLDNGDCDQFCHEEQNSVVCSCARGYTLAD 114
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 27.3 bits (60), Expect = 5.0
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 37 TVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIEDKPVTLTLYKSEIFY-SNWDKRS 95
++ + + V S I +IDI ++ + P + E Y +
Sbjct: 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS-PRYIHFLSDEKAYVTQIWDYR 106
Query: 96 IEKYDKTSHT 105
I + ++
Sbjct: 107 IFIINPKTYE 116
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 27.1 bits (60), Expect = 6.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 98 KYDKTSHTRSVIYRSSEK-----EINDM 120
K KTSH + YR E+ E+ +
Sbjct: 370 KTHKTSHCYRITYRHMERTLSQREVRHI 397
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 25.8 bits (57), Expect = 8.5
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVN 169
C N C+ C G C C Y+++
Sbjct: 89 LICVNENGGCEQYCSDHTGTK----RSCRCHEGYSLLA 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 26.3 bits (58), Expect = 9.4
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 36 LTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIE--DKP--VTLTLYKSEIFYSNW 91
++ D +VY N S+ + ID ++A + P V ++ +++ +N
Sbjct: 37 AVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGSSPQGVAVSPDGKQVYVTNM 93
Query: 92 DKRSIEKYDKTSHT 105
++ D TS+T
Sbjct: 94 ASSTLSVIDTTSNT 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 26.4 bits (58), Expect = 10.0
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 34 NSLTVNYDEKRVYYVNLLSSSIESIDIEG 62
L V+ D + + + L I +G
Sbjct: 404 TGLDVSPDNRYLVISDFLDHQIRVYRRDG 432
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.402
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,603,811
Number of extensions: 194882
Number of successful extensions: 761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 139
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)