RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13634
(242 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 72.6 bits (177), Expect = 7e-16
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLL--HKVKANSLTVNYDEKRVYYVNLLSSSIESI 58
+ W+DW N IE S +DGT R +L + N LT + ++ +V+ + E +
Sbjct: 136 LYWTDWNRDNP-KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
Query: 59 DIEGRNKITIVANIEDKPVTLTLYKSEIFYSNWDKRSIEKYDK-TSHTRSVIYRSSEKEI 117
+ + ++ + P +T Y ++Y++W S+ D S + + +
Sbjct: 195 NPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253
Query: 118 NDMLIYHPS 126
+ I
Sbjct: 254 YGITIALSQ 262
Score = 54.5 bits (130), Expect = 2e-09
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 177 SFLIYAQRNILSRLITDPTQCPDSPYE---IPNVKNIKALDYDPVARQIYWIDSKLQAIK 233
+ L++AQ + RL + + + K I L +D V + +YW D +I
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 234 RASEN 238
RAS +
Sbjct: 62 RASLH 66
Score = 41.0 bits (95), Expect = 6e-05
Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 17/236 (7%)
Query: 10 NGGTIERSALDGTQRS-------VLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDIEG 62
G IER L+ + + L + +K VY+ ++ SI + G
Sbjct: 8 QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG 67
Query: 63 RNKITIVANIEDKPVTLTL--YKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDM 120
TI+ P + L IF+++ IE R V++ + +
Sbjct: 68 GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 121 LIYHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLI 180
+ W D + T G N + + + NG S +
Sbjct: 128 VTDPVRGNLYWTDW-----NRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQL 181
Query: 181 YAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236
R P + ++ A+ + +Y+ D K ++
Sbjct: 182 CWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 69.6 bits (169), Expect = 8e-15
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 1 MLWSDWGAGNGGTIERSALDGTQRSVLLHKVKANSLTVNYDEKRVYYVNLLSSSIESIDI 60
M W+DWG V + N +T++ R+Y+V+ SI SID+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193
Query: 61 EGRNKITIVANIED--KPVTLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEIN 118
G N+ TI+ + + P +L +++ ++F+++ +I ++ + + + +
Sbjct: 194 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 253
Query: 119 DMLIYHPSRQ 128
DM+++H Q
Sbjct: 254 DMVLFHNLTQ 263
Score = 52.2 bits (124), Expect = 9e-09
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 177 SFLIYAQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236
++L + R+ + ++ D + IPN++N+ ALD + + +IYW D + I
Sbjct: 2 AYLFFTNRHEVRKMTLDR---SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 237 ENAT 240
+
Sbjct: 59 LDRA 62
Score = 48.0 bits (113), Expect = 2e-07
Identities = 28/237 (11%), Positives = 82/237 (34%), Gaps = 19/237 (8%)
Query: 10 NGGTIERSALDGTQRSVLLHKVK-ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITI 68
N + + LD ++ + L+ ++ +L R+Y+ +L I S ++ + ++
Sbjct: 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67
Query: 69 VANIEDKPV------TLTLYKSEIFYSNWDKRSIEKYDKTSHTRSVIYRSSEKEINDMLI 122
+ + + + S I++++ ++ D R ++R + + +++
Sbjct: 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127
Query: 123 YHPSRQTGWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIY- 181
G+ G + + NG + S +Y
Sbjct: 128 DPV---HGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYW 180
Query: 182 --AQRNILSRLITDPTQCPDSPYEIPNVKNIKALDYDPVARQIYWIDSKLQAIKRAS 236
++ + +S + + + + + +L +++W D +AI A+
Sbjct: 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 45.5 bits (108), Expect = 6e-08
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 130 GWNKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNG-TC 172
G N+C N C ++C Y+C CP + +V C
Sbjct: 1 GTNECLDNNGGCSHVCNDLKI-----GYECLCPDGFQLVAQRRC 39
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 41.0 bits (96), Expect = 3e-06
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMAPSSF 178
C N C+ C G C C Y+ + +G +C +
Sbjct: 2 CVNENGGCEQYCSDHTGTK----RSCRCHEGYSLLADGVSCTPTVEY 44
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 40.6 bits (95), Expect = 5e-06
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMAPSSF 178
C + N C+ C + C C Y N +C F
Sbjct: 3 CNIKNGRCEQFCKNSADNK----VVCSCTEGYRLAENQKSCEPAVPF 45
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 39.2 bits (91), Expect = 1e-05
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 132 NKCAVANNECDYLCLATPG-RGGGLNYKCECPTHYTMV--NGTCMA 174
+ ++N C YLCL P + C CP + +C+
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 50
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 39.0 bits (91), Expect = 2e-05
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMAPSSF 178
C++ N +CD C + C C YT NG C+ +
Sbjct: 3 CSLDNGDCDQFCHEEQN-----SVVCSCARGYTLADNGKACIPTGPY 44
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 38.6 bits (90), Expect = 2e-05
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMAPSSF 178
C++ N C + CL G +C C Y + C F
Sbjct: 2 CSLDNGGCTHYCLEEVG-----WRRCSCAPGYKLGDDLLQCHPAVKF 43
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 37.5 bits (87), Expect = 6e-05
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 134 CAVANNECDYLCLATPGRGGGLNYKCECPTHYT-MVNG-TCMAPSSF 178
C++ N CD C +C C Y + +C++ F
Sbjct: 1 CSLDNGGCDQFCREERS-----EVRCSCAHGYVLGDDSKSCVSTERF 42
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 36.7 bits (85), Expect = 1e-04
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
++C + C+ T G Y+CECP Y + C
Sbjct: 6 DECKEPDVCKHGQCINTDGS-----YRCECPFGYILAGNEC 41
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 33.6 bits (77), Expect = 0.001
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMV--NGTCMA 174
++C + C LC+ G YKC+C + + C A
Sbjct: 2 DECQD-PDTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKACKA 40
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 32.9 bits (75), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 132 NKCAVANNE---CDYLCLATPGRGGGLNYKCECPTHYTM 167
++C VA E CD+ C G + C C Y +
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLG-----GFYCSCRAGYVL 35
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 32.2 bits (73), Expect = 0.004
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 132 NKCAVANNE---CDYLCLATPGRGGGLNYKCECPTHYTMV--NGTCMA 174
++C + + CD+ C G Y C C Y + TC A
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLG-----GYYCSCRVGYILHQNKHTCSA 44
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 31.8 bits (72), Expect = 0.005
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 132 NKCA-VANNECDYLCLATPGRGGGLNYKCECPTHYTM 167
N+C + C + C G Y C CP Y +
Sbjct: 1 NECTDFVDVPCSHFCNNFIG-----GYFCSCPPEYFL 32
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 31.4 bits (71), Expect = 0.008
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTM 167
N+C C+ TPG +Y C+CP + +
Sbjct: 4 NECLDPTTCISGNCVNTPG-----SYICDCPPDFEL 34
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 30.5 bits (69), Expect = 0.014
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 132 NKCAVANNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTC 172
++C C +C PG ++C C +
Sbjct: 3 DECEN-GGFCSGVCHNLPG-----TFECICGPDSALAGQIG 37
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 29.8 bits (67), Expect = 0.033
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 132 NKCAVANNEC-DYLCLATPGRGGGLNYKCECPTHYTM 167
++C C C+ T G ++C CPT Y +
Sbjct: 4 DECQELPGLCQGGKCINTFGS-----FQCRCPTGYYL 35
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 29.0 bits (65), Expect = 0.042
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 134 CAVANNECDY--LCLATPGRGGGLNYKCECPTHYTMVNGTCMA 174
CA ++C C + C C +YT C+A
Sbjct: 2 CANNRHQCSVHAECRDYAT-----GFCCRCVANYTGNGRQCVA 39
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 29.0 bits (65), Expect = 0.053
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 132 NKCAVANNECDY-LCLATPGRGGGLNYKCECPTHYTM--VNG-TCM 173
++C ++ + C C+ TPG ++C+C Y + CM
Sbjct: 4 DECRISPDLCGRGQCVNTPGD-----FECKCDEGYESGFMMMKNCM 44
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 29.0 bits (65), Expect = 0.059
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 132 NKCAVANNECDY-LCLATPGRGGGLNYKCECPTHYTM 167
++C C +C T G +Y+CECP + +
Sbjct: 3 DECQRDPLLCRGGVCHNTEG-----SYRCECPPGHQL 34
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 28.4 bits (63), Expect = 0.12
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 15/53 (28%)
Query: 132 NKCAVANNEC--------DYLCLATPGRGGGLNYKCECPTHYTMV--NGTCMA 174
++CA + +LC G Y C C Y + +C A
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVG-----GYFCSCRPGYELQEDRHSCQA 52
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 26.2 bits (58), Expect = 0.59
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 132 NKCAVANNECDY--LCLATPGRGGGLNYKCECPTHYT 166
++C++ N C++ C+ T G ++C+C YT
Sbjct: 4 DECSLGANPCEHAGKCINTLGS-----FECQCLQGYT 35
>d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus
virus-like particle SSV1 [TaxId: 244589]}
Length = 64
Score = 24.5 bits (53), Expect = 3.4
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 19 LDGTQRSVL--LHKVKANSLTVNYDEKRVYYVNLLSSSIES 57
LD R +L +H++K + +T N D++++ IE+
Sbjct: 13 LDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIEA 53
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 25.5 bits (54), Expect = 5.2
Identities = 6/72 (8%), Positives = 15/72 (20%)
Query: 138 NNECDYLCLATPGRGGGLNYKCECPTHYTMVNGTCMAPSSFLIYAQRNILSRLITDPTQC 197
N G G + +G C+ + + T+
Sbjct: 37 PNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKY 96
Query: 198 PDSPYEIPNVKN 209
+ + +
Sbjct: 97 QYGGVCVASCPH 108
>d2vo8a1 b.2.2.2 (A:939-1074) Exo-alpha-sialidase {Clostridium
perfringens [TaxId: 1502]}
Length = 136
Score = 24.8 bits (54), Expect = 5.9
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 30 KVKANSLTVNYDEKRVYYVNLLSSSIESIDIEGRN----KITIVANIEDKPVT 78
+V + Y+ + ++S +S+ ++ + K+ I+ +
Sbjct: 34 EVYSAEYLFEYNAEAFILNE-ITSFNDSLFVKSKEVEPGKVRILVASLGNEIE 85
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 25.1 bits (54), Expect = 7.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 33 ANSLTVNYDEKRVYYVNLLSSSIESIDIEGRNKITIVANIE 73
AN + ++ D K VY LL+ I + +T + +
Sbjct: 208 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 248
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.402
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,791
Number of extensions: 39771
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 44
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)