BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13635
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + +YWTD E + S +DG + + T ++ HP
Sbjct: 343 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------------TAQIAHP 386
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW
Sbjct: 387 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 446
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIER+ L+G +RV+LV LGWPNG+ LD D K+YW DAKTDKIE+++ DG R
Sbjct: 447 GEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 505
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
R L+ + +PH+FG +LLGDYVYWTDWQRRSI+RV+K + +REVII++
Sbjct: 506 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ 552
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 11/194 (5%)
Query: 153 VLYWEDIDQPRAIASYKLPTIE---------VEHPDGVAVDWVARNLYWTDTGTDRIEVC 203
++YW D+ + AI + E + PDG+A DW+ LYWTD+ T+RIEV
Sbjct: 45 LIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 103
Query: 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL 263
L+G+ RKVL +L +PRAI L P+ G+++W+DW E PKIER+ ++G R +++ +
Sbjct: 104 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI 162
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTD 323
WPNG+TLD + +KLYW DAK + I + DG NR+ ++ +LPH F ++L D +YWTD
Sbjct: 163 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 222
Query: 324 WQRRSIDRVNKITG 337
W SI NK TG
Sbjct: 223 WSTHSILACNKYTG 236
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 25/264 (9%)
Query: 41 AQMLLFATSKDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT 99
A +LL+A +D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I
Sbjct: 1 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 60
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++
Sbjct: 61 F--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 118
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDL 218
DQPRAI A+D + +YWTD G +IE ++G+ R +++N+++
Sbjct: 119 DQPRAI----------------ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 162
Query: 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278
P +TL L+W+D K I +S L+G R +VK L P +TL D L
Sbjct: 163 YWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--IL 218
Query: 279 YWCDAKTDKIEMID-FDGNNRREL 301
YW D T I + + G RE+
Sbjct: 219 YWTDWSTHSILACNKYTGEGLREI 242
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 143/276 (51%), Gaps = 27/276 (9%)
Query: 40 AAQMLLFATSKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 97
A ++LL A D+R +L P V ++D+ AIDY + + WTD I
Sbjct: 308 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRR 367
Query: 98 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
DG+ GS+ V+T + PDG+A+DW+ LYWTD+ T+++EV+ L+G RK+L E
Sbjct: 368 SFIDGS--GSQF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 424
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNT 216
D+++PRAI +D + +YWTD G +IE L+G+ R VLVNT
Sbjct: 425 DLEEPRAI----------------VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT 468
Query: 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276
L P + L G ++W D K KIE +G R +LV+D++ G TL D
Sbjct: 469 SLGWPNGLALDYDEGKIYWGD--AKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-- 524
Query: 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
+YW D + IE + + RE+I + LP + G+
Sbjct: 525 YVYWTDWQRRSIERV-HKRSAEREVIIDQLPDLMGL 559
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + +YWTD E + S +DG + + T ++ HP
Sbjct: 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------------TAQIAHP 394
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW
Sbjct: 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 454
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIER+ L+G +RV+LV LGWPNG+ LD D K+YW DAKTDKIE+++ DG R
Sbjct: 455 GEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
R L+ + +PH+FG +LLGDYVYWTDWQRRSI+RV+K + +REVII++
Sbjct: 514 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ 560
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 11/194 (5%)
Query: 153 VLYWEDIDQPRAIASYKLPTIE---------VEHPDGVAVDWVARNLYWTDTGTDRIEVC 203
++YW D+ + AI + E + PDG+A DW+ LYWTD+ T+RIEV
Sbjct: 53 LIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 111
Query: 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL 263
L+G+ RKVL +L +PRAI L P+ G+++W+DW E PKIER+ ++G R +++ +
Sbjct: 112 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI 170
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTD 323
WPNG+TLD + +KLYW DAK + I + DG NR+ ++ +LPH F ++L D +YWTD
Sbjct: 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 230
Query: 324 WQRRSIDRVNKITG 337
W SI NK TG
Sbjct: 231 WSTHSILACNKYTG 244
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 25/264 (9%)
Query: 41 AQMLLFATSKDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT 99
A +LL+A +D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I
Sbjct: 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++
Sbjct: 69 F--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 126
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDL 218
DQPRAI A+D + +YWTD G +IE ++G+ R +++N+++
Sbjct: 127 DQPRAI----------------ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170
Query: 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278
P +TL L+W+D K I +S L+G R +VK L P +TL D L
Sbjct: 171 YWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--IL 226
Query: 279 YWCDAKTDKIEMID-FDGNNRREL 301
YW D T I + + G RE+
Sbjct: 227 YWTDWSTHSILACNKYTGEGLREI 250
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 143/276 (51%), Gaps = 27/276 (9%)
Query: 40 AAQMLLFATSKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 97
A ++LL A D+R +L P V ++D+ AIDY + + WTD I
Sbjct: 316 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRR 375
Query: 98 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
DG+ GS+ V+T + PDG+A+DW+ LYWTD+ T+++EV+ L+G RK+L E
Sbjct: 376 SFIDGS--GSQF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 432
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNT 216
D+++PRAI +D + +YWTD G +IE L+G+ R VLVNT
Sbjct: 433 DLEEPRAI----------------VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT 476
Query: 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276
L P + L G ++W D K KIE +G R +LV+D++ G TL D
Sbjct: 477 SLGWPNGLALDYDEGKIYWGD--AKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-- 532
Query: 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
+YW D + IE + + RE+I + LP + G+
Sbjct: 533 YVYWTDWQRRSIERV-HKRSAEREVIIDQLPDLMGL 567
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 23/243 (9%)
Query: 101 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
+ NNV + G+ L D ++YWTD + + ++G
Sbjct: 30 NNNNVA----IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS----------- 74
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE 220
A + +++P+G+AVDW+ +NLYW DTGT+RIEV +L+G HR+VLV DL
Sbjct: 75 -----ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 129
Query: 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280
PRA+ L PA G+++W++W K PKI+R+ ++G ER LV + +G NG+T+D +LYW
Sbjct: 130 PRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYW 187
Query: 281 CDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340
D T+ IE + G N RE+I ++LPH FG++ DY+YWTDW RRSI+R NK +G +R
Sbjct: 188 TDLDTNLIESSNMLGLN-REVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 246
Query: 341 EVI 343
+I
Sbjct: 247 TII 249
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 131/255 (51%), Gaps = 36/255 (14%)
Query: 39 VAAQMLLFATSKDIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 97
V LLF+ DIR +L V I + ++E +A+D+ + + WTD + IS
Sbjct: 9 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 68
Query: 98 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
+G+ + +V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+
Sbjct: 69 AFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 125
Query: 158 DIDQPRAIASYKL------------PTIE---------------VEHPDGVAVDWVARNL 190
D+D PRA+A P I+ V +G+ +D+ R L
Sbjct: 126 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 185
Query: 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL 250
YWTD T+ IE + G +R+V+ + DL P L+ Y++W+DW+ R IER+
Sbjct: 186 YWTDLDTNLIESSNMLGLNREVIAD-DL--PHPFGLTQYQDYIYWTDWS--RRSIERANK 240
Query: 251 NGGERVLLVKDRLGW 265
G+ +++ L +
Sbjct: 241 TSGQNRTIIQGHLDY 255
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 123 AIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE-HPD 179
AID+ L ++LYW DS N + + DG Q + +P+ +E P
Sbjct: 349 AIDYDPLDKQLYWIDSRQNMIRKAQEDGS-----------QGFTVVVSSVPSQNLEIQPY 397
Query: 180 GVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239
+++D +R +YWT T+ I V RL+G V++ + PRAI ++P GY+++++
Sbjct: 398 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQ 457
Query: 240 EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299
E+ PKIER+ L+G ER +L L P + LD KL+W D+ +IE D G NR
Sbjct: 458 ERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 517
Query: 300 ELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
L + N+ G+++ +++YW D Q++ I++++ +TG +
Sbjct: 518 VLEDSNILQPVGLTVFENWLYWIDKQQQMIEKID-MTGRE 556
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 121/277 (43%), Gaps = 27/277 (9%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 100
LLF+ I + P I I L AIDY + W D MI
Sbjct: 315 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 374
Query: 101 DGNN---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
DG+ V N I P L+ID + +YWT TN + V+ LDG+ V+
Sbjct: 375 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 434
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVN 215
+ D+PRAI V +P+ +Y+T+ + +IE L+GT R+VL
Sbjct: 435 EQDRPRAI---------VVNPE-------KGYMYFTNLQERSPKIERAALDGTEREVLFF 478
Query: 216 TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275
+ L +P A+ L G LFW+D + +R IE S L+G R++L + P G+T V
Sbjct: 479 SGLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT--VFE 534
Query: 276 EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
LYW D + IE ID G R + + + I
Sbjct: 535 NWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 571
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 23/243 (9%)
Query: 101 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
+ NNV + G+ L D ++YWTD + + ++G
Sbjct: 25 NNNNVA----IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS----------- 69
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE 220
A + +++P+G+AVDW+ +NLYW DTGT+RIEV +L+G HR+VLV DL
Sbjct: 70 -----ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 124
Query: 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280
PRA+ L PA G+++W++W K PKI+R+ ++G ER LV + +G NG+T+D +LYW
Sbjct: 125 PRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYW 182
Query: 281 CDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340
D T+ IE + G N RE+I ++LPH FG++ DY+YWTDW RRSI+R NK +G +R
Sbjct: 183 TDLDTNLIESSNMLGLN-REVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 341 EVI 343
+I
Sbjct: 242 TII 244
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 131/255 (51%), Gaps = 36/255 (14%)
Query: 39 VAAQMLLFATSKDIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 97
V LLF+ DIR +L V I + ++E +A+D+ + + WTD + IS
Sbjct: 4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 98 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
+G+ + +V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+
Sbjct: 64 AFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120
Query: 158 DIDQPRAIASYKL------------PTIE---------------VEHPDGVAVDWVARNL 190
D+D PRA+A P I+ V +G+ +D+ R L
Sbjct: 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 180
Query: 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL 250
YWTD T+ IE + G +R+V+ + DL P L+ Y++W+DW+ R IER+
Sbjct: 181 YWTDLDTNLIESSNMLGLNREVIAD-DL--PHPFGLTQYQDYIYWTDWS--RRSIERANK 235
Query: 251 NGGERVLLVKDRLGW 265
G+ +++ L +
Sbjct: 236 TSGQNRTIIQGHLDY 250
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 123 AIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE-HPD 179
AID+ L ++LYW DS N + + DG Q + +P+ +E P
Sbjct: 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGS-----------QGFTVVVSSVPSQNLEIQPY 392
Query: 180 GVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239
+++D +R +YWT T+ I V RL+G V++ + PRA+ ++P GY+++++
Sbjct: 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ 452
Query: 240 EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299
E+ PKIER+ L+G ER +L L P + LD KL+W D+ +IE D G NR
Sbjct: 453 ERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 512
Query: 300 ELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
L + N+ G+++ +++YW D Q++ I++++ +TG +
Sbjct: 513 VLEDSNILQPVGLTVFENWLYWIDKQQQMIEKID-MTGRE 551
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 119/277 (42%), Gaps = 27/277 (9%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 100
LLF+ I + P I I L AIDY + W D MI
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 101 DGNN---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
DG+ V N I P L+ID + +YWT TN + V+ LDG+ V+
Sbjct: 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 429
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVN 215
+ D+PRA V V+ +Y+T+ + +IE L+GT R+VL
Sbjct: 430 EQDRPRA----------------VVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF 473
Query: 216 TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275
+ L +P A+ L G LFW+D + +R IE S L+G R++L + P G+T V
Sbjct: 474 SGLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT--VFE 529
Query: 276 EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
LYW D + IE ID G R + + + I
Sbjct: 530 NWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 566
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 23/243 (9%)
Query: 101 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
+ NNV + G+ L D ++YWTD + + ++G
Sbjct: 23 NNNNVA----IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS----------- 67
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE 220
A + +++P+G+AVDW+ +NLYW DTGT+RIEV +L+G HR+VLV DL
Sbjct: 68 -----ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 122
Query: 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280
PRA+ L PA G+++W++W K PKI+R+ ++G ER LV + +G NG+T+D +LYW
Sbjct: 123 PRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYW 180
Query: 281 CDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340
D T+ IE + G N RE+I ++LPH FG++ DY+YWTDW RRSI+R NK +G +R
Sbjct: 181 TDLDTNLIESSNMLGLN-REVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 239
Query: 341 EVI 343
+I
Sbjct: 240 TII 242
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 130/251 (51%), Gaps = 36/251 (14%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 101
LLF+ DIR +L V I + ++E +A+D+ + + WTD + IS +
Sbjct: 6 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 65
Query: 102 GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 161
G+ + +V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+D+D
Sbjct: 66 GSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 122
Query: 162 PRAIASYKL------------PTIE---------------VEHPDGVAVDWVARNLYWTD 194
PRA+A P I+ V +G+ +D+ R LYWTD
Sbjct: 123 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTD 182
Query: 195 TGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE 254
T+ IE + G +R+V+ + DL P L+ Y++W+DW+ R IER+ G+
Sbjct: 183 LDTNLIESSNMLGLNREVIAD-DL--PHPFGLTQYQDYIYWTDWS--RRSIERANKTSGQ 237
Query: 255 RVLLVKDRLGW 265
+++ L +
Sbjct: 238 NRTIIQGHLDY 248
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 123 AIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE-HPD 179
AID+ L ++LYW DS N + + DG Q + +P+ +E P
Sbjct: 342 AIDYDPLDKQLYWIDSRQNMIRKAQEDGS-----------QGFTVVVSSVPSQNLEIQPY 390
Query: 180 GVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239
+++D +R +YWT T+ I V RL+G V++ + PRAI ++P GY+++++
Sbjct: 391 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQ 450
Query: 240 EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299
E+ PKIER+ L+G ER +L L P + LD KL+W D+ +IE D G NR
Sbjct: 451 ERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 510
Query: 300 ELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
L + N+ G+++ +++YW D Q++ I++++ +TG +
Sbjct: 511 VLEDSNILQPVGLTVFENWLYWIDKQQQMIEKID-MTGRE 549
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 121/277 (43%), Gaps = 27/277 (9%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 100
LLF+ I + P I I L AIDY + W D MI
Sbjct: 308 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 367
Query: 101 DGNN---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 157
DG+ V N I P L+ID + +YWT TN + V+ LDG+ V+
Sbjct: 368 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 427
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVN 215
+ D+PRAI V +P+ +Y+T+ + +IE L+GT R+VL
Sbjct: 428 EQDRPRAI---------VVNPE-------KGYMYFTNLQERSPKIERAALDGTEREVLFF 471
Query: 216 TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275
+ L +P A+ L G LFW+D + +R IE S L+G R++L + P G+T V
Sbjct: 472 SGLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT--VFE 527
Query: 276 EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
LYW D + IE ID G R + + + I
Sbjct: 528 NWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 564
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 150 KRKVLYWEDIDQPRAI-ASYKLPTIE------VEHPDGVAVDWVARNLYWTDTGTDRIEV 202
+R++++W D+ R + A+ +E +E P G+AVDWV LYWTD+GT RIEV
Sbjct: 126 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 185
Query: 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR 262
L+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++
Sbjct: 186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTH 244
Query: 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWT 322
L WPNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWT
Sbjct: 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 304
Query: 323 DWQRRSIDRVNKITGNDREVI 343
DW +SI+ NK TG ++E+I
Sbjct: 305 DWHTKSINSANKFTGKNQEII 325
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
+FWSD R I R+ LNG +V L P G+ +D ++KLYW D+ T +IE+ +
Sbjct: 130 VFWSDVTLDR--ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187
Query: 293 FDGNNRRELINENL--PHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
DG +R+ L+ ++L P + + +YWTDW + + G+ R +I +
Sbjct: 188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 150 KRKVLYWEDIDQPRAI-ASYKLPTIE------VEHPDGVAVDWVARNLYWTDTGTDRIEV 202
+R++++W D+ R + A+ +E +E P G+AVDWV LYWTD+GT RIEV
Sbjct: 83 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 142
Query: 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR 262
L+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++
Sbjct: 143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTH 201
Query: 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWT 322
L WPNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWT
Sbjct: 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 261
Query: 323 DWQRRSIDRVNKITGNDREVI 343
DW +SI+ NK TG ++E+I
Sbjct: 262 DWHTKSINSANKFTGKNQEII 282
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
+FWSD R I R+ LNG +V L P G+ +D ++KLYW D+ T +IE+ +
Sbjct: 87 VFWSDVTLDR--ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144
Query: 293 FDGNNRRELINENL--PHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
DG +R+ L+ ++L P + + +YWTDW + + G+ R +I +
Sbjct: 145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 199
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 153 VLYWEDIDQPRAIASYKLPTIE---------VEHPDGVAVDWVARNLYWTDTGTDRIEVC 203
++YW D+ + AI + E + PDG+A DW+ LYWTD+ T+RIEV
Sbjct: 48 LIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 106
Query: 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL 263
L+G+ RKVL +L +PRAI L P+ G+++W+DW E PKIER+ ++G R +++ +
Sbjct: 107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI 165
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTD 323
WPNG+TLD + +KLYW DAK + I + DG NR+ ++ +LPH F ++L D +YWTD
Sbjct: 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 225
Query: 324 WQRRSIDRVNKITGND-REV 342
W SI NK TG RE+
Sbjct: 226 WSTHSILACNKYTGEGLREI 245
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 151/265 (56%), Gaps = 25/265 (9%)
Query: 40 AAQMLLFATSKDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCC 98
+A +LL+A +D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 99 TFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED 158
F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W++
Sbjct: 63 EF--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 120
Query: 159 IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTD 217
+DQPRAI A+D + +YWTD G +IE ++G+ R +++N++
Sbjct: 121 LDQPRAI----------------ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164
Query: 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK 277
+ P +TL L+W+D K I +S L+G R +VK L P +TL D
Sbjct: 165 IYWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--I 220
Query: 278 LYWCDAKTDKIEMID-FDGNNRREL 301
LYW D T I + + G RE+
Sbjct: 221 LYWTDWSTHSILACNKYTGEGLREI 245
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 153 VLYWEDIDQPRAIASYKLPTIE---------VEHPDGVAVDWVARNLYWTDTGTDRIEVC 203
++YW D+ + AI + E + PDG+A DW+ LYWTD+ T+RIEV
Sbjct: 45 LIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 103
Query: 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL 263
L+G+ RKVL +L +PRAI L P+ G+++W+DW E PKIER+ ++G R +++ +
Sbjct: 104 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI 162
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTD 323
WPNG+TLD + +KLYW DAK + I + DG NR+ ++ +LPH F ++L D +YWTD
Sbjct: 163 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 222
Query: 324 WQRRSIDRVNKITGND-REV 342
W SI NK TG RE+
Sbjct: 223 WSTHSILACNKYTGEGLREI 242
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 25/264 (9%)
Query: 41 AQMLLFATSKDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT 99
A +LL+A +D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I
Sbjct: 1 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 60
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++
Sbjct: 61 F--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 118
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDL 218
DQPRAI A+D + +YWTD G +IE ++G+ R +++N+++
Sbjct: 119 DQPRAI----------------ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 162
Query: 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278
P +TL L+W+D K I +S L+G R +VK L P +TL D L
Sbjct: 163 YWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--IL 218
Query: 279 YWCDAKTDKIEMID-FDGNNRREL 301
YW D T I + + G RE+
Sbjct: 219 YWTDWSTHSILACNKYTGEGLREI 242
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 17/209 (8%)
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180
GLA D + + +YWTD + +SL G + + +D+ P +G
Sbjct: 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP----------------EG 83
Query: 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
+A+D + R ++WTD+ DRIEV +++GT R+VL +T LV PR I P G L+W+DWN
Sbjct: 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
PKIE S ++G R +L +D LG PNG+T D + +L W DA T + E ++ RR+
Sbjct: 144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK 203
Query: 301 LINENLPHVFGISLLGDYVYWTDWQRRSI 329
++ E L + F ++ G +Y+TDW+ S+
Sbjct: 204 VL-EGLQYPFAVTSYGKNLYYTDWKTNSV 231
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 114/259 (44%), Gaps = 35/259 (13%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEE-------GAAIDYYYKKSMVCWTDHGTEMIS 96
LLFA + I L R T K G A D K +V WTD I
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK--VVYWTDISEPSIG 61
Query: 97 CCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW 156
+ G G +I L +P+G+A+D L ++WTDS+ +++EV+ +DG +R+VL+
Sbjct: 62 RASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD 118
Query: 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLV 214
+ PR G+ D V NLYWTD D +IE ++GT+R++L
Sbjct: 119 TGLVNPR----------------GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162
Query: 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274
+L P +T L W D R + G +VL + L +P +T
Sbjct: 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGK 219
Query: 275 NEKLYWCDAKTDKIEMIDF 293
N LY+ D KT+ + +D
Sbjct: 220 N--LYYTDWKTNSVIAMDL 236
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
LF +R +ER+ + E + G+ D ++ +YW D I
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64
Query: 293 FDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTG 350
G +I ++L GI+L LG ++WTD Q I+ V K+ G R V+ + TG
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE-VAKMDGTQRRVLFD---TG 120
Query: 351 VTRRR 355
+ R
Sbjct: 121 LVNPR 125
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 16/206 (7%)
Query: 154 LYWEDIDQPRAIASYKLP------------TIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
+YW D+ Q R I S +L + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 44 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261
V +G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV +
Sbjct: 103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTE 161
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN--LPHVFGISLLGDYV 319
+ WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V
Sbjct: 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221
Query: 320 YWTDWQRRSIDRVNKITGNDREVIIE 345
+WTD +I N++TG+D ++ E
Sbjct: 222 FWTDIINEAIFSANRLTGSDVNLLAE 247
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 21/265 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-G 102
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 4 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 63 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 123 RAI----------------VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 167 NGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224
Query: 282 DAKTDKIEMIDFDGNNRRELINENL 306
D + I + + L+ ENL
Sbjct: 225 DIINEAIFSANRLTGSDVNLLAENL 249
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 16/206 (7%)
Query: 154 LYWEDIDQPRAIASYKLP------------TIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
+YW D+ Q R I S +L + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 126 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261
V +G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV +
Sbjct: 185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTE 243
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN--LPHVFGISLLGDYV 319
+ WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V
Sbjct: 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 303
Query: 320 YWTDWQRRSIDRVNKITGNDREVIIE 345
+WTD +I N++TG+D ++ E
Sbjct: 304 FWTDIINEAIFSANRLTGSDVNLLAE 329
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 21/265 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-G 102
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 86 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 144
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 145 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 204
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 205 RAI----------------VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 249 NGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 306
Query: 282 DAKTDKIEMIDFDGNNRRELINENL 306
D + I + + L+ ENL
Sbjct: 307 DIINEAIFSANRLTGSDVNLLAENL 331
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 16/206 (7%)
Query: 154 LYWEDIDQPRAIASYKLP------------TIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
+YW D+ Q R I S +L + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 166 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 224
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261
V +G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV +
Sbjct: 225 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTE 283
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN--LPHVFGISLLGDYV 319
+ WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V
Sbjct: 284 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 343
Query: 320 YWTDWQRRSIDRVNKITGNDREVIIE 345
+WTD +I N++TG+D ++ E
Sbjct: 344 FWTDIINEAIFSANRLTGSDVNLLAE 369
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 21/265 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-G 102
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 126 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 184
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 185 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 244
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 245 RAI----------------VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 288
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 289 NGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 346
Query: 282 DAKTDKIEMIDFDGNNRRELINENL 306
D + I + + L+ ENL
Sbjct: 347 DIINEAIFSANRLTGSDVNLLAENL 371
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 16/206 (7%)
Query: 154 LYWEDIDQPRAIASYKLP------------TIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
+YW D+ Q R I S +L + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 438 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261
V +G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV +
Sbjct: 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTE 555
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN--LPHVFGISLLGDYV 319
+ WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V
Sbjct: 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 615
Query: 320 YWTDWQRRSIDRVNKITGNDREVIIE 345
+WTD +I N++TG+D ++ E
Sbjct: 616 FWTDIINEAIFSANRLTGSDVNLLAE 641
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 21/265 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-G 102
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 398 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 456
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 457 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 516
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 517 RAI----------------VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 561 NGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 618
Query: 282 DAKTDKIEMIDFDGNNRRELINENL 306
D + I + + L+ ENL
Sbjct: 619 DIINEAIFSANRLTGSDVNLLAENL 643
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 16/206 (7%)
Query: 154 LYWEDIDQPRAIASYKLP------------TIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
+YW D+ Q R I S +L + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 420 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261
V +G RK L +PRAI + P HG+++W+DW KI++ LNG + LV +
Sbjct: 479 VADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTE 537
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN--LPHVFGISLLGDYV 319
+ WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V
Sbjct: 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 597
Query: 320 YWTDWQRRSIDRVNKITGNDREVIIE 345
+WTD +I N++TG+D ++ E
Sbjct: 598 FWTDIINEAIFSANRLTGSDVNLLAE 623
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 21/265 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-G 102
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 380 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 438
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ V S VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E +P
Sbjct: 439 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKP 498
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 499 RAI----------------VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 543 NGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600
Query: 282 DAKTDKIEMIDFDGNNRRELINENL 306
D + I + + L+ ENL
Sbjct: 601 DIINEAIFSANRLTGSDVNLLAENL 625
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIA------- 166
NGL P GLA+D +Y TD N++ + + VL ++ ++ P +A
Sbjct: 64 NGLYQPQGLAVDG-AGTVYVTDFN-NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAV 121
Query: 167 -------------------SYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
LP + PDGVAVD + N+Y TDT +R+ E
Sbjct: 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES 180
Query: 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267
++ VL TD+ P I + A G ++ ++ N ++ + L +L L P
Sbjct: 181 NNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTN--QVVKLLAGSTTSTVLPFTGLNTPL 237
Query: 268 GITLDVDNEKLYWCDAKTDKI 288
+ +D D +Y D D++
Sbjct: 238 AVAVDSD-RTVYVADRGNDRV 257
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 7/153 (4%)
Query: 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFW 235
P GVAV + +Y T+ + + V V T P + LSP L+
Sbjct: 74 SSPQGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYV 132
Query: 236 SDWNEKRPKIERSLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294
++ +K S++N + ++ +G P GI + D K+Y + + I +ID
Sbjct: 133 TNNGDKT----VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSXSISVIDTV 188
Query: 295 GNNRRELIN-ENLPHVFGISLLGDYVYWTDWQR 326
N+ + + E P ++ G Y T+ +
Sbjct: 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 34/223 (15%)
Query: 59 RPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118
RPL+P ++ D K V W DG N+ K + G ++
Sbjct: 139 RPLQPRELVADDATNTVYISGIGKESVIWV-----------VDGGNIKLKTAIQNTGKMS 187
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH- 177
GLA+D ++LY T+++ + + + D K ++ KL EH
Sbjct: 188 T-GLALDSEGKRLYTTNADGELITIDTADNK--------------ILSRKKLLDDGKEHF 232
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+++D + + TD+ EV ++ + +L E A+ +PA + +
Sbjct: 233 FINISLDTARQRAFITDSKA--AEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVT- 289
Query: 238 WNEKRPKIERSLLNGGE-RVLLVKDRLGWPNGITLDVDNEKLY 279
R + S+++ +V+ D PN + L D + LY
Sbjct: 290 ---HRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLY 329
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 34/223 (15%)
Query: 59 RPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118
RPL+P ++ D K V W DG N+ K + G +
Sbjct: 139 RPLQPRELVADDATNTVYISGIGKESVIWV-----------VDGGNIKLKTAIQNTGKXS 187
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH- 177
GLA+D ++LY T+++ + + + D K ++ KL EH
Sbjct: 188 T-GLALDSEGKRLYTTNADGELITIDTADNK--------------ILSRKKLLDDGKEHF 232
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+++D + + TD+ EV ++ + +L E A+ +PA + +
Sbjct: 233 FINISLDTARQRAFITDSKA--AEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVT- 289
Query: 238 WNEKRPKIERSLLNGGE-RVLLVKDRLGWPNGITLDVDNEKLY 279
R + S+++ +V+ D PN + L D + LY
Sbjct: 290 ---HRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLY 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,924,987
Number of Sequences: 62578
Number of extensions: 535624
Number of successful extensions: 1508
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 66
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)