RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13635
(357 letters)
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 260 bits (666), Expect = 3e-86
Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 21/260 (8%)
Query: 87 WTDHGTEMISCCTFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 144
+ G I + N + + GLA D + + +YWTD + +
Sbjct: 6 FAQTGK--IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 145 SLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCR 204
SL G + + +D+ P+G+A+D + R ++WTD+ DRIEV +
Sbjct: 64 SLHGGEPTTIIRQDLG----------------SPEGIALDHLGRTIFWTDSQLDRIEVAK 107
Query: 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG 264
++GT R+VL +T LV PR I P G L+W+DWN PKIE S ++G R +L +D LG
Sbjct: 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 265 WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDW 324
PNG+T D + +L W DA T + E ++ RR+++ E L + F ++ G +Y+TDW
Sbjct: 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAVTSYGKNLYYTDW 226
Query: 325 QRRSIDRVNKITGNDREVII 344
+ S+ ++ + +
Sbjct: 227 KTNSVIAMDLAISKEMDTFH 246
Score = 80.6 bits (199), Expect = 1e-17
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 232 YLFWSDWNE-KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEM 290
+L ++ + +R +ER+ + E + G+ D ++ +YW D I
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 291 IDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
G +I ++L GI+L LG ++WTD Q I+ + G R V+ +
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK-MDGTQRRVLFD 118
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 259 bits (662), Expect = 9e-81
Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 20/269 (7%)
Query: 86 CWTDHGTEMISCCT-----FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 140
G+ T S++ + L L + + ++YW+D
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
Query: 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200
+ + LD Y I + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 430 ICSTQLDRAHGVSSYDTVISR------------DIQAPDGLAVDWIHSNIYWTDSVLGTV 477
Query: 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260
V +G RK L +PRAI + P HG+++W+DW KI++ LNG + LV
Sbjct: 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT 536
Query: 261 DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISLLGDY 318
+ + WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D
Sbjct: 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 596
Query: 319 VYWTDWQRRSIDRVNKITGNDREVIIERS 347
V+WTD +I N++TG+D ++ E
Sbjct: 597 VFWTDIINEAIFSANRLTGSDVNLLAENL 625
Score = 190 bits (483), Expect = 5e-55
Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 21/273 (7%)
Query: 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 101
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 378 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436
Query: 102 GNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E
Sbjct: 437 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS 496
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLV 219
+PRAI VD V +YWTD GT +I+ L G LV ++
Sbjct: 497 KPRAIV----------------VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
P ITL G L+W D K I +NGG R +++D + +L V +K++
Sbjct: 541 WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
W D + I + + L+ ENL +
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 631
Score = 84.1 bits (207), Expect = 7e-18
Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 20/180 (11%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + +A+ + + + AI + WTD GT I +G ++
Sbjct: 472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
++++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 532 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--- 585
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
HP +AV ++WTD + I L+ +L+ P +
Sbjct: 586 -----------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632
Score = 57.5 bits (138), Expect = 3e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 544 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
WTD + ++ L E++ P + +
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 260 bits (666), Expect = 1e-80
Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 19/273 (6%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
S+ + T D + S + N L + + ++YW+D
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN----VVALDTEVASNRIYWSDL 443
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
+ + LD Y I + +++ PDG+AVDW+ N+YWTD+
Sbjct: 444 SQRMICSTQLDRAHGVSSYDTVISR------------DIQAPDGLAVDWIHSNIYWTDSV 491
Query: 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
+ V +G RK L + +PRAI + P HG+++W+DW KI++ LNG +
Sbjct: 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIY 550
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISL 314
LV + + WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++
Sbjct: 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 610
Query: 315 LGDYVYWTDWQRRSIDRVNKITGNDREVIIERS 347
D V+WTD +I N++TG+D ++ E
Sbjct: 611 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENL 643
Score = 193 bits (490), Expect = 2e-55
Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 20/252 (7%)
Query: 63 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDG 121
++I +L A+D + + W+D MI D + S + VI+ + PDG
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475
Query: 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181
LA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV--------------- 520
Query: 182 AVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
VD V +YWTD GT +I+ L G LV ++ P ITL G L+W D
Sbjct: 521 -VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
K I +NGG R +++D + +L V +K++W D + I + +
Sbjct: 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 637
Query: 301 LINENLPHVFGI 312
L+ ENL +
Sbjct: 638 LLAENLLSPEDM 649
Score = 84.1 bits (207), Expect = 6e-18
Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 20/180 (11%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + +A+ + ++ + AI + WTD GT I +G ++
Sbjct: 490 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
++++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 550 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--- 603
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
HP +AV ++WTD + I L+ +L+ P +
Sbjct: 604 -----------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 650
Score = 57.9 bits (139), Expect = 2e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 562 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 616
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
WTD + ++ L E++ P + +
Sbjct: 617 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 652
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 249 bits (637), Expect = 2e-80
Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 20/260 (7%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
+ + + I D E ++W+D +++ ++
Sbjct: 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD---FHHRRELVFWSDVTLDRILRAN 144
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
L+G + + ++ P G+AVDWV LYWTD+GT RIEV L
Sbjct: 145 LNGSNVEEVVSTGLE----------------SPGGLAVDWVHDKLYWTDSGTSRIEVANL 188
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++ L W
Sbjct: 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFW 247
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWTDW
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 307
Query: 326 RRSIDRVNKITGNDREVIIE 345
+SI+ NK TG ++E+I
Sbjct: 308 TKSINSANKFTGKNQEIIRN 327
Score = 189 bits (480), Expect = 5e-57
Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 24/255 (9%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
D+++++ +V W+D + I +G+NV V++ GL +P GLA+DW+ +KLYWTDS
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDS 178
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
T+++EV++LDG RKVL W+ +++PRAIA + + +YWTD G
Sbjct: 179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIA----------------LHPMEGTIYWTDWG 222
Query: 197 -TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER 255
T RIE ++G+ R+++ +T L P +T+ A ++W D IER+ L+G R
Sbjct: 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV--IERANLDGSHR 280
Query: 256 VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315
++ L P IT V + LYW D T I + +E+I L I L
Sbjct: 281 KAVISQGLPHPFAIT--VFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338
Query: 316 GDYVYWTDWQRRSID 330
R +
Sbjct: 339 HPQRQPAGKNRCGDN 353
Score = 86.0 bits (212), Expect = 6e-19
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + I +ANL + V + + LE+ AI + + + WTD G I + DG+
Sbjct: 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG- 236
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
+ + L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI
Sbjct: 237 --RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 294
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVC-RLEGTHRKVLVNTDLVEPRAI 224
++ +LYWTD T I + G +++++ N
Sbjct: 295 TVFE------------------DSLYWTDWHTKSINSANKFTGKNQEIIRN--------- 327
Query: 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGG 253
L + K NGG
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNRCGDNNGG 356
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 241 bits (616), Expect = 4e-78
Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 15/242 (6%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
S++ + L L + + ++YW+D + + LD Y I +
Sbjct: 19 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---- 74
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+++ PDG+AVDW+ N+YWTD+ + V +G RK L + +PRAI
Sbjct: 75 --------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 126
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ P HG+++W+DW KI++ LNG + LV + + WPNGITLD+ + +LYW D+K
Sbjct: 127 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 286 DKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
I ID +G NR+ ++ + L H F +++ D V+WTD +I N++TG+D ++
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245
Query: 344 IE 345
E
Sbjct: 246 AE 247
Score = 56.2 bits (135), Expect = 4e-09
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I+ L+ + ++++ I + W D IS +G N +
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTI 201
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ + ++ +K++WTD + ++ L E++ P + +
Sbjct: 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
Score = 36.6 bits (84), Expect = 0.009
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 278 LYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI--SLLGDYVYWTDWQRRSIDRVNKI 335
L++ ++ + D + LI NL +V + + + +YW+D +R I
Sbjct: 4 LFF--TNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 336 TGNDREVIIERSCTGV 351
+ +
Sbjct: 61 RAHGVSSYDTVISRDI 76
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 242 bits (619), Expect = 2e-77
Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 17/262 (6%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
T + S++ + L L + + ++YW+D + +
Sbjct: 83 IAYLFFTNRHEVRKMTLDR--SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 140
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
LD + + S +++ PDG+AVDW+ N+YWTD+ + V
Sbjct: 141 LDR-------AHGVSSYDTVISR-----DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV + + W
Sbjct: 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVTENIQW 247
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTD 323
PNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V+WTD
Sbjct: 248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307
Query: 324 WQRRSIDRVNKITGNDREVIIE 345
+I N++TG+D ++ E
Sbjct: 308 IINEAIFSANRLTGSDVNLLAE 329
Score = 52.9 bits (126), Expect = 6e-08
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N ++ + ++ +K++
Sbjct: 250 GITLDLLSGR--LYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFEDKVF 304
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
WTD + ++ L E++ P +
Sbjct: 305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 236 bits (603), Expect = 4e-76
Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
D N ++ GL + + +YW+D ++ + + +
Sbjct: 18 VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------ 71
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
+ + PDG+A DW+ LYWTD+ T+RIEV L+G+ RKVL +L
Sbjct: 72 ---------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+PRAI L P+ G+++W+DW E PKIER+ ++G R +++ + WPNG+TLD + +KLY
Sbjct: 123 QPRAIALDPSSGFMYWTDWGE-VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 181
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
W DAK + I + DG NR+ ++ +LPH F ++L D +YWTDW SI NK TG
Sbjct: 182 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241
Query: 340 REVIIE 345
I
Sbjct: 242 LREIHS 247
Score = 50.5 bits (120), Expect = 3e-07
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 203
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ L P L + + LYWTD T+ + + + DI P I ++
Sbjct: 204 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAF 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 235 bits (599), Expect = 3e-75
Identities = 88/261 (33%), Positives = 138/261 (52%), Gaps = 21/261 (8%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
I + + ++ N L L E ++W+D +++ ++
Sbjct: 46 VLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 101
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
L+G + + ++ P G+AVDWV LYWTD+GT RIEV L
Sbjct: 102 LNGSNVEEVVSTGLE----------------SPGGLAVDWVHDKLYWTDSGTSRIEVANL 145
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++ L W
Sbjct: 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFW 204
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWTDW
Sbjct: 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 264
Query: 326 RRSIDRVNKITGNDREVIIER 346
+SI+ NK TG ++E+I +
Sbjct: 265 TKSINSANKFTGKNQEIIRNK 285
Score = 179 bits (454), Expect = 1e-53
Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 25/283 (8%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG 102
+LLFA DIR R + ++ +LE A+D+++++ +V W+D + I +G
Sbjct: 46 VLLFANRIDIRQVLPHRS-EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG RKVL W+ +++P
Sbjct: 105 SNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 161
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEP 221
RAIA + + +YWTD G T RIE ++G+ R+++ +T L P
Sbjct: 162 RAIA----------------LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 205
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
+T+ A ++W D IER+ L+G R ++ L P IT V + LYW
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQGLPHPFAIT--VFEDSLYWT 261
Query: 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDW 324
D T I + +E+I L I L
Sbjct: 262 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGK 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 232 bits (591), Expect = 6e-71
Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 11/261 (4%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
I+ D + + L + D L ++LYW DS N + +
Sbjct: 310 FLLFSQKSAINRMVIDEQQ-SPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ 368
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
DG + + + S P +++D +R +YWT T+ I V RL
Sbjct: 369 EDGSQGFTV----------VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G V++ + PRA+ ++P GY+++++ E+ PKIER+ L+G ER +L L
Sbjct: 419 DGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
P + LD KL+W D+ +IE D G NR L + N+ G+++ +++YW D Q
Sbjct: 479 PIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQ 538
Query: 326 RRSIDRVNKITGNDREVIIER 346
++ I++++ R + R
Sbjct: 539 QQMIEKIDMTGREGRTKVQAR 559
Score = 219 bits (558), Expect = 3e-66
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 21/250 (8%)
Query: 95 ISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154
I + + NN + + G+ L D ++YWTD + + ++G + +
Sbjct: 17 IRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV 74
Query: 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+++P+G+AVDW+ +NLYW DTGT+RIEV +L+G HR+VLV
Sbjct: 75 V----------------EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV 118
Query: 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274
DL PRA+ L PA G+++W++W +PKI+R+ ++G ER LV + +G NG+T+D
Sbjct: 119 WKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVPN-VGRANGLTIDYA 176
Query: 275 NEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNK 334
+LYW D T+ IE + G NR +I ++LPH FG++ DY+YWTDW RRSI+R NK
Sbjct: 177 KRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANK 235
Query: 335 ITGNDREVII 344
+G +R +I
Sbjct: 236 TSGQNRTIIQ 245
Score = 178 bits (453), Expect = 5e-51
Identities = 79/274 (28%), Positives = 115/274 (41%), Gaps = 27/274 (9%)
Query: 46 FATSKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 103
F+ I + P I I L AIDY + W D MI DG+
Sbjct: 313 FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGS 372
Query: 104 N---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
V N I P L+ID + +YWT TN + V+ LDG+ V+ + D
Sbjct: 373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQD 432
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDL 218
+PRA+ V+ +Y+T+ +IE L+GT R+VL + L
Sbjct: 433 RPRAVV----------------VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL 476
Query: 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278
+P A+ L G LFW+D + +R IE S L+G R++L + P + L V L
Sbjct: 477 SKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQP--VGLTVFENWL 532
Query: 279 YWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
YW D + IE ID G R + + + I
Sbjct: 533 YWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 566
Score = 104 bits (261), Expect = 6e-25
Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 79/349 (22%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 110
I ++ L + V + KDL+ A+ + + WT+ G + I DG+
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----T 159
Query: 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ +D+ P + Y+
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI-ADDLPHPFGLTQYQ- 217
Query: 171 PTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230
+YWTD IE + ++ L I + +
Sbjct: 218 -----------------DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 260
Query: 231 GYLFWSD--------------------------------------------WNEKRPKIE 246
W++ ++ I
Sbjct: 261 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 320
Query: 247 RSLLNGGER--VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE 304
R +++ + ++L L I D +++LYW D++ + I DG+ ++
Sbjct: 321 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS 380
Query: 305 NLP------HVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
++P + +S+ Y+YWT I+ + G V+++
Sbjct: 381 SVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR-LDGRSVGVVLK 428
Score = 52.5 bits (125), Expect = 1e-07
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A L + V L + A+ + + W D I G N + +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVL 514
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ ++ P GL + LYW D + +E + G++ + I Q I +
Sbjct: 515 EDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAV 569
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 231 bits (589), Expect = 9e-71
Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 18/267 (6%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
+ + + D + + + + + D + +YWTD
Sbjct: 310 KTCKDGATELLLLARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
E + S +DG + + I HPDG+AVDWVARNLYWTDTG
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIA----------------HPDGIAVDWVARNLYWTDTG 412
Query: 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
TDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV
Sbjct: 413 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRV 471
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG 316
+LV LGWPNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLG
Sbjct: 472 VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG 531
Query: 317 DYVYWTDWQRRSIDRVNKITGNDREVI 343
DYVYWTDWQRRSI+RV+K + +I
Sbjct: 532 DYVYWTDWQRRSIERVHKRSAEREVII 558
Score = 219 bits (559), Expect = 2e-66
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 16/248 (6%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
D N ++ GL + + +YW+D ++ + + +
Sbjct: 23 VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------ 76
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
+ + PDG+A DW+ LYWTD+ T+RIEV L+G+ RKVL +L
Sbjct: 77 ---------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+PRAI L P+ G+++W+DW E PKIER+ ++G R +++ + WPNG+TLD + +KLY
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 186
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
W DAK + I + DG NR+ ++ +LPH F ++L D +YWTDW SI NK TG
Sbjct: 187 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 246
Query: 340 REVIIERS 347
I
Sbjct: 247 LREIHSDI 254
Score = 177 bits (449), Expect = 1e-50
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 24/238 (10%)
Query: 67 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 126
++D+ AIDY + + WTD I DG+ V+T + PDG+A+DW
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDW 401
Query: 127 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186
+ LYWTD+ T+++EV+ L+G RK+L ED+++PRAI +D +
Sbjct: 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIV----------------LDPM 445
Query: 187 ARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKI 245
+YWTD G +IE L+G+ R VLVNT L P + L G ++W D + I
Sbjct: 446 VGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK--I 503
Query: 246 ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN 303
E +G R +LV+D++ G T + + +YW D + IE + R +I+
Sbjct: 504 EVMNTDGTGRRVLVEDKIPHIFGFT--LLGDYVYWTDWQRRSIERVHKRSAEREVIID 559
Score = 124 bits (311), Expect = 2e-31
Identities = 75/332 (22%), Positives = 122/332 (36%), Gaps = 46/332 (13%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 208
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
+ L P L + + LYWTD T+ + + + DI P I ++
Sbjct: 209 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 172 TIEVEH----------------------------------PDGVAVDWVARNLYWTDTGT 197
+G A L T
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 198 DRIEVCRLEGTHRKV-LVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
D + + L D+ AI P GY++W+D + I RS ++G
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA--IRRSFIDGSGSQ 384
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL-- 314
+V ++ P+GI +D LYW D TD+IE+ +G R+ LI+E+L I L
Sbjct: 385 FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDP 444
Query: 315 LGDYVYWTDW-QRRSIDRVNKITGNDREVIIE 345
+ Y+YWTDW + I+R + G+DR V++
Sbjct: 445 MVGYMYWTDWGEIPKIERAA-LDGSDRVVLVN 475
Score = 106 bits (265), Expect = 2e-25
Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 74/345 (21%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISCCTFDGNNVGSKHN 110
I ++NL L+ V ++L++ AI + WTD G I DG++
Sbjct: 108 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FI 164
Query: 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ ++
Sbjct: 165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE- 223
Query: 171 PTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230
LYWTD T I C +++D+ P I
Sbjct: 224 -----------------DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 231 GYLFWSDWNEK-----------------------------------------------RP 243
++ R
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 244 KIERSLLNGGE--RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL 301
+ R L+ + ++L + + I D +YW D + I DG+ + +
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386
Query: 302 INENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVII 344
+ + H GI++ + +YWTD I+ + G R+++I
Sbjct: 387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR-LNGTMRKILI 430
Score = 50.6 bits (120), Expect = 5e-07
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A L + V + L + Y + + W D T+ I DG +
Sbjct: 460 IERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR---RVL 516
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154
+ + + G + + +YWTD + +E +R+V+
Sbjct: 517 VEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVI 557
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 123 bits (310), Expect = 5e-33
Identities = 38/287 (13%), Positives = 88/287 (30%), Gaps = 41/287 (14%)
Query: 65 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-----LITP 119
+ I L A+ K+ V + + + I+ TF + S + NG L
Sbjct: 47 SNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106
Query: 120 DGLAIDWLTEKLYWT---DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176
+ + +Y+ L +DG+++K + +
Sbjct: 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI---------------------K 145
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWS 236
+ + R Y+ + ++ + + + +P + +++
Sbjct: 146 NHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVL----DDTNVYYM 201
Query: 237 DWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN 296
D N I +N V+L + + N + Y + ++ DG
Sbjct: 202 DVNRD-NAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGT 256
Query: 297 NRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+EL I++ YVY+TD+ + + + +
Sbjct: 257 GFKELAKGE---FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 77.8 bits (191), Expect = 2e-16
Identities = 25/243 (10%), Positives = 65/243 (26%), Gaps = 43/243 (17%)
Query: 65 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEM---ISCCTFDGNNVGSKHNVITNGLITPDG 121
L+ I + + + + T+ + DG +
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--------IKNHYL 149
Query: 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181
+ Y+ + + +L + + Y + +P +
Sbjct: 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDD-------------- 195
Query: 182 AVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
N+Y+ D D I + + VL ++ + +F+
Sbjct: 196 ------TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQR-GG 243
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
P + +G L K ++V ++ +Y+ D ++K + +
Sbjct: 244 DNPALCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK 298
Query: 301 LIN 303
+
Sbjct: 299 ALQ 301
Score = 71.3 bits (174), Expect = 4e-14
Identities = 34/258 (13%), Positives = 79/258 (30%), Gaps = 48/258 (18%)
Query: 102 GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDID 160
GN G+ +N GL +++++++ +L ++DG
Sbjct: 9 GNTAGNLYN---AGLFCESD-------GEVFFSNTNDNGRLYAMNIDGSNIH-------- 50
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL--VNTD- 217
KL + ++ +Y+ +I R L + +
Sbjct: 51 --------KLSNDTAMY-----INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97
Query: 218 -----LVEPRAITLSPAHGYLFWSDWN-EKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271
L I S Y+++ ++ + + R ++G E+ + T
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-----YLFTC 152
Query: 272 DVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDR 331
+ + Y+ + K ++ D + + N + VY+ D R +
Sbjct: 153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD--DTNVYYMDVNRDNAIV 210
Query: 332 VNKITGNDREVIIERSCT 349
I + V+ E +
Sbjct: 211 HVNINNPNPVVLTEANIE 228
Score = 68.6 bits (167), Expect = 3e-13
Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 26/249 (10%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
GS + ++N I+ +Y+ + K+ + R L +
Sbjct: 46 GSNIHKLSNDTAM----YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--- 98
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+ + + +++ L++ + R++G +K + N T
Sbjct: 99 -GSTVLDPDPCIYASLIGNYIYY-LHYDTQTATSLYRIRIDGEEKKKIKNHY-----LFT 151
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ + Y ++++ + + R L P + +D+ +Y+ D
Sbjct: 152 CNTSDRYFYYNNPKNGQ--LYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNR 205
Query: 286 D-KIEMIDFDGNNRRELINENLPHVFGISLLGDYV-YWTDWQRRSIDRVNKITGNDREVI 343
D I ++ + N L N+ H ++ G + Y ++ V G + +
Sbjct: 206 DNAIVHVNINNPNPVVLTEANIEH---YNVYGSLIFYQRGGDNPALCVVK-NDGTGFKEL 261
Query: 344 IERSCTGVT 352
+ +
Sbjct: 262 AKGEFCNIN 270
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 70.7 bits (174), Expect = 4e-14
Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 26/240 (10%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
+ G+ + NGL P GLA+D +Y TD + +++ + +
Sbjct: 51 LATGSTGTT-VLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVL------ 102
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
P + +P+G+AVD +Y D G +R+ + VL T L
Sbjct: 103 -----------PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN 150
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+P + + + G ++ +D + R + + +V+L + P GI +D +Y
Sbjct: 151 DPDGVAVDNS-GNVYVTDTDNNR--VVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VY 206
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVNKITGN 338
+ T+++ + L L +++ D VY D + ++ +
Sbjct: 207 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS-LEH 265
Score = 68.8 bits (169), Expect = 2e-13
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 88 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147
TD +++ N + +GL P+GLA+D +Y D N++ +
Sbjct: 83 TDFNNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG 137
Query: 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
K + V + L PDGVAVD + N+Y TDT +R+ E
Sbjct: 138 SKTQTV-----------LPFTGL-----NDPDGVAVD-NSGNVYVTDTDNNRVVKLEAES 180
Query: 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267
++ VL TD+ P I + A G ++ ++ N + + + L +L L P
Sbjct: 181 NNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQ--VVKLLAGSTTSTVLPFTGLNTPL 237
Query: 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGN 296
+ +D D +Y D D++ + +
Sbjct: 238 AVAVDSDR-TVYVADRGNDRVVKLTSLEH 265
Score = 35.3 bits (82), Expect = 0.018
Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 28/125 (22%)
Query: 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIA------ 166
GL PDG+A+D + +Y TD++ N++ + + VL + DI P IA
Sbjct: 146 FTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT 204
Query: 167 --------------------SYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206
S LP + P VAVD R +Y D G DR+
Sbjct: 205 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSL 263
Query: 207 GTHRK 211
H
Sbjct: 264 EHHHH 268
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 70.0 bits (172), Expect = 9e-14
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 23/216 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
P G+ + K++ T + N + +LDGK I Y LPT
Sbjct: 17 PYGITVS-DKGKVWITQHKANMISCINLDGK---------------ITEYPLPT-PDAKV 59
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
+ + +++T+ ++I +G ++ + P IT P G +++++
Sbjct: 60 MCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEM 117
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
N R I R +G R + ++ +P+ ITL DN L++ + + + I I G+
Sbjct: 118 NGNR--IGRITDDGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITESGDIT 174
Query: 299 RELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVN 333
I GI+ D +++ + I R+
Sbjct: 175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210
Score = 69.3 bits (170), Expect = 1e-13
Identities = 42/256 (16%), Positives = 82/256 (32%), Gaps = 29/256 (11%)
Query: 87 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146
+T++ I T G K + N P G+ +++T+ N++ +
Sbjct: 72 FTENAANKIGRITKKGI---IKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD 127
Query: 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206
DGK R+ P I D L++T+ + I
Sbjct: 128 DGKIREYELPNKGSYPSFITL---------GSDN--------ALWFTENQNNAIGRITES 170
Query: 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266
G + + T P IT L++ + + I R +G + P
Sbjct: 171 GDITEFKIPTPASGPVGITKGND-DALWFVEIIGNK--IGRITTSGEITEFKIPTPNARP 227
Query: 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR 326
+ IT L++ + +KI + + I GI G+ +++
Sbjct: 228 HAITAGAGI-DLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAM--- 283
Query: 327 RSIDRVNKITGNDREV 342
D++ K+T +
Sbjct: 284 -ECDKIGKLTLIKDNM 298
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 69.6 bits (171), Expect = 1e-13
Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 23/216 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
P G+ K+++T + NK+ G+ I +++PT
Sbjct: 22 PYGITSS-EDGKVWFTQHKANKISSLDQSGR---------------IKEFEVPT-PDAKV 64
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
+ V ++++T+ G ++I +G + + P IT G ++++
Sbjct: 65 MCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQL 122
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
N R I + +G + ++ +P ITL DN L++ + + + I I G
Sbjct: 123 NGDR--IGKLTADGTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITNTGKLE 179
Query: 299 RELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVN 333
+ N GI+ D +++ + I R+
Sbjct: 180 EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215
Score = 64.3 bits (157), Expect = 9e-12
Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 28/248 (11%)
Query: 87 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146
+T++G I + G + P G+ L +++T +++ +
Sbjct: 77 FTENGANKIGKLSKKGGFTEYP---LPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTA 132
Query: 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206
DG + P I D L++T+ + I
Sbjct: 133 DGTIYEYDLPNKGSYPAFIT---------LGSDN--------ALWFTENQNNSIGRITNT 175
Query: 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266
G + + T+ P IT G L++ + + I R G + P
Sbjct: 176 GKLEEYPLPTNAAAPVGITSGND-GALWFVEIMGNK--IGRITTTGEISEYDIPTPNARP 232
Query: 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGD-YVYWTDWQ 325
+ IT ++ ++++ + ++I I D + + GI+ D V++
Sbjct: 233 HAITAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKC 291
Query: 326 RRSIDRVN 333
+ I ++N
Sbjct: 292 K--IGKLN 297
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 56.9 bits (137), Expect = 2e-09
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 14/165 (8%)
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+ +A ++ T+ I +G + + + + +
Sbjct: 34 LENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG--KVSGLAFTSNGDLVATGW 90
Query: 238 WNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297
+ P + +G LL + NGIT D + D+ I +ID +
Sbjct: 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS 149
Query: 298 RRELI----------NENLPHVFGISLLGDYVYWTDWQRRSIDRV 332
+ P G+ G+++Y ++ ++ + R+
Sbjct: 150 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRI 194
Score = 36.1 bits (83), Expect = 0.013
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 17/99 (17%)
Query: 115 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174
+GL LY +++E L ++ +D ++ E
Sbjct: 167 VFPAANGLKRF--GNFLYVSNTEKMLL---------LRI----PVDSTDKPGEPEIFV-E 210
Query: 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL 213
+ D A D V NLY + + + + +
Sbjct: 211 QTNIDDFAFD-VEGNLYGATHIYNSVVRIAPDRSTTIIA 248
Score = 31.9 bits (72), Expect = 0.32
Identities = 13/151 (8%), Positives = 37/151 (24%), Gaps = 15/151 (9%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+G+ T + DS + + + + + S
Sbjct: 119 LNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA------A 171
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRL--EGTHRKVLVNTDLVEPRAITLSPAHGYLFWS 236
+G+ LY ++T + + + + + G L+ +
Sbjct: 172 NGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGA 228
Query: 237 DWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267
+ R + ++ + G
Sbjct: 229 THIYNS--VVR-IAPDRSTTIIAQAEQGVIG 256
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 50.5 bits (121), Expect = 3e-07
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 43/236 (18%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV-EH 177
P G I K+Y ++ +N + + +D V + T+
Sbjct: 34 PMGAVISPDGTKVYVANAHSNDVSI--IDTATNNV----------------IATVPAGSS 75
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYLFWS 236
P GVAV + +Y T+ + + V ++ T V P + LSP L+ +
Sbjct: 76 PQGVAVSPDGKQVYVTNMASSTLSV--IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133
Query: 237 DWNE--------KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKI 288
+ + + ++ G P GI + D K+Y + + I
Sbjct: 134 NNGDKTVSVINTVTKAVINTVSVGRS-----------PKGIAVTPDGTKVYVANFDSMSI 182
Query: 289 EMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ID N+ + + E P ++ G Y T+ + + V+ I ++
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN-VDKYFNTVSMIDTGTNKIT 237
Score = 44.8 bits (106), Expect = 2e-05
Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 13/176 (7%)
Query: 172 TIEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPA 229
TI V +P G + +Y + ++ + + ++ V+ P+ + +SP
Sbjct: 27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPD 84
Query: 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKI 288
++ ++ + S+++ + + G P G+ L D +KLY + +
Sbjct: 85 GKQVYVTNMASST--L--SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 289 EMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+I+ ++ P ++ G VY ++ ++ I VI
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS---MSISVIDTVTNSVI 193
Score = 43.6 bits (103), Expect = 6e-05
Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV-E 176
+P GLA+ +KLY T++ VS ++ + V+ T+ V
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDK--TVSVINTVTKAVIN----------------TVSVGR 158
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL--VNTDLVEPRAITLSPAHGYLF 234
P G+AV +Y + + I V ++ V+ V + P I ++P +
Sbjct: 159 SPKGIAVTPDGTKVYVANFDSMSISV--IDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAY 215
Query: 235 WSDWNEKRPKIERSLLNGGERVLLVKDRLGW-PNGITLDVDNEKLYWCDAKTDKIEMIDF 293
++ ++ + S+++ G + + +G P GI + D +K+Y + + + +ID
Sbjct: 216 VTNVDKYFNTV--SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273
Query: 294 DGNNRRELIN-ENLPHVFGISLLGDYVY 320
N + P+ G + V
Sbjct: 274 ATNTITATMAVGKNPYASGQFIGSIPVQ 301
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 47.8 bits (114), Expect = 2e-06
Identities = 24/207 (11%), Positives = 53/207 (25%), Gaps = 29/207 (14%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
I+P+G L D + + ID + I
Sbjct: 135 ISPNG-------NGLILIDRSSAN------------TVRRFKIDADGVLFDTGQEFISGG 175
Query: 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV--EPRAITLSPAHGYL 233
P + + + + I + + L+N P I +S +
Sbjct: 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTV 235
Query: 234 FWSDWNEKRPKI-------ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286
+ + + + G +L+ L N + L+ KL+ +
Sbjct: 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295
Query: 287 KIEMIDFDGNNRRELINENLPHVFGIS 313
++++ G + I
Sbjct: 296 ELKVFTISGKVVGYVAGIEANGGIAIC 322
Score = 42.8 bits (101), Expect = 1e-04
Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 42/231 (18%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
ITPD + + + S K K + TI +
Sbjct: 91 ITPDD-------QFAVTVTGLNHPFNMQSYSFLKNKFI----------------STIPIP 127
Query: 176 EHPDGVAVDWVARNLYWTD-TGTDRIEVCRLEGTHRKVLVNTDLVE----PRAITLSPAH 230
G+A+ L D + + + +++ + + P IT +P
Sbjct: 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187
Query: 231 GYLFWSDWNEKR-PKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
+ F ++ +E + V P I + D +Y T +
Sbjct: 188 NFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVF 246
Query: 290 MIDFDGNNRRELI-----------NENLPHVFGISLLGDYVYWTDWQRRSI 329
+ + + ++ ++ + R +
Sbjct: 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297
Score = 39.4 bits (92), Expect = 0.001
Identities = 32/235 (13%), Positives = 58/235 (24%), Gaps = 27/235 (11%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV-EH 177
AI + T L + KV + E
Sbjct: 42 FVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV----------------VAIQEGQSS 85
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYLFWS 236
V + + + K + + + I +SP L
Sbjct: 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILI 145
Query: 237 DWNEKRPKIERSLLNGGERVLLVKDRL----GWPNGITLDVDNEKLYWCDAKTDKIEMID 292
D + R ++ + P IT D + + + I +++
Sbjct: 146 D-RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204
Query: 293 FDGNNRRELIN----ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
L+N NLP +S G VY + N+++G V
Sbjct: 205 TQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 47.1 bits (112), Expect = 4e-06
Identities = 35/256 (13%), Positives = 71/256 (27%), Gaps = 38/256 (14%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV--- 175
G+A+D L + + +S D K + I E+
Sbjct: 26 VSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS 84
Query: 176 ------EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV----------NTDLV 219
P G+++D N + TD ++ +L+
Sbjct: 85 SGKNLFYLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143
Query: 220 EPRAITLSPAHGYLFWSDWN--------EKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271
+P + + P+ G +F SD K + P+ + L
Sbjct: 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203
Query: 272 DVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE--------NLPHVFGISLLGD-YVYWT 322
++L D + +I+ D I + ++ G + Y+
Sbjct: 204 VPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG 263
Query: 323 DWQRRSIDRVNKITGN 338
D + +N +G
Sbjct: 264 DQEPVQGFVMNFSSGE 279
Score = 40.6 bits (95), Expect = 5e-04
Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 119 PDGLAIDWLTEKLYWTDSETN-KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177
P +A++ T ++ +D N ++ S GK E + +P
Sbjct: 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPH----- 199
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+A+ L D RI+ + + + +S G+LF +
Sbjct: 200 --SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257
Query: 238 WN-----EKRPKIERSLLNGGERVLL---VKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
++ + + GE + + V+ P+ I ++ +Y DA T+ +
Sbjct: 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS-EDGTVYIGDAHTNTVW 316
Query: 290 MIDFDGN 296
Sbjct: 317 KFTLTEK 323
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 45.3 bits (107), Expect = 2e-05
Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 28/235 (11%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
+ +L+ + + N + V D K T+++
Sbjct: 169 LGFVETISIPEHNELWVSQMQANAVHV--FDLKTLAYKA----------------TVDLT 210
Query: 176 -EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYL 233
+ + D + +Y ++ ++ I V ++ + + TD PR + LS L
Sbjct: 211 GKWSKILLYDPIRDLVYCSNWISEDISV--IDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268
Query: 234 FWSDWNEKRPKIER---SLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKIE 289
+ + ++ + + + + L+ I K+Y D KIE
Sbjct: 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328
Query: 290 MIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ D ++ I + P+ +S G Y+Y + G +
Sbjct: 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV 383
Score = 43.0 bits (101), Expect = 1e-04
Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 36/196 (18%)
Query: 118 TPDGLAIDWLTEKLYWTDSETNKLE-----VSSLDGKKRKVLYWEDIDQPRAIASYKLPT 172
P GL + ++LY + E + K K++ T
Sbjct: 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------T 298
Query: 173 IEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAH 230
I + + +Y +D +IEV + +KV + + +P I LSP
Sbjct: 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEV--YDLKEKKVQKSIPVFDKPNTIALSPDG 356
Query: 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL-----------GWPNGITLDVDNEKLY 279
YL+ S P + V D P G+ + DN L
Sbjct: 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416
Query: 280 WCDAKTDKIEMIDFDG 295
D +I + DG
Sbjct: 417 ISDFLDHQIRVYRRDG 432
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 44.5 bits (106), Expect = 2e-05
Identities = 29/185 (15%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV 175
P G+A++ + D+ +++++ +G+ + ++
Sbjct: 29 FTEPSGVAVN-AQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGECGKRDSQL 76
Query: 176 EHPDGVAVDWVARNLYWT-DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLF 234
+P+ VAV + ++ T + T +I++ G + T L PR +T+ G +
Sbjct: 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRII 135
Query: 235 WSDWNEKRPKI---ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291
+ R I ++L L +PNG+ ++ E ++ D + +++
Sbjct: 136 VVECKVMRVIIFDQNGNVL----HKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVF 190
Query: 292 DFDGN 296
+++G
Sbjct: 191 NYEGQ 195
Score = 29.8 bits (68), Expect = 1.2
Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 68/243 (27%)
Query: 88 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147
T I G V L P G+ +D ++ + + ++ + +
Sbjct: 95 ERSPTHQIQIYNQYGQFVRKFG---ATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN 150
Query: 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
G + +E P+GV V+ + ++ +D ++V EG
Sbjct: 151 GN-----VLHKFGCSK----------HLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG 194
Query: 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267
YL +I GGE +P
Sbjct: 195 Q-----------------------YLR---------QI------GGE------GITNYPI 210
Query: 268 GITLDVDNEKLYWCDAKTDK-IEMIDFDGNNRRELINE-NLPHVFGISLLGD-YVYWTDW 324
G+ ++ N ++ D + + + DG L ++ F ++L+ D V
Sbjct: 211 GVGIN-SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK 269
Query: 325 QRR 327
R
Sbjct: 270 DYR 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 43.6 bits (102), Expect = 6e-05
Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 44/260 (16%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG 106
+ I K +T + + + + + + + F
Sbjct: 202 NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261
Query: 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL----------YW 156
+ Y + + S D K +++
Sbjct: 262 P--LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK 319
Query: 157 EDIDQPRAIASYKLPT--IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+ +D A P V++P + Y+ D I + +G V
Sbjct: 320 DWVDGVGKKARMHAPRQGTFVKNPAYKGSS-DEYDFYFCDRENHCIRILTPQGR-----V 373
Query: 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274
T ++G ++D G L + R P GI D +
Sbjct: 374 TT-------FAGRGSNGTSGYND--------------GD---LRQEARFNHPEGIVYDEE 409
Query: 275 NEKLYWCDAKTDKIEMIDFD 294
E + D + +I I ++
Sbjct: 410 RECFFIGDRENRRIRKIGYE 429
Score = 37.4 bits (86), Expect = 0.006
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 7/128 (5%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIE----VCRLEGTHRKVLVNTDLVEPRAITLSPAHGY 232
+ A ++ T+ + + E + + T P +G
Sbjct: 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDR-LGWPNGITLDVDNEKLYWCDAKTDKIEMI 291
L+++ WN + + R E L + GW I Y I
Sbjct: 240 LYFNSWNAGQ--VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297
Query: 292 DFDGNNRR 299
D+D +R
Sbjct: 298 DYDWKTKR 305
Score = 35.9 bits (82), Expect = 0.020
Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 49/231 (21%)
Query: 101 DGNNV-----GSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKV 153
+ K V T +GL + + + T+ + N D +
Sbjct: 156 GEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNN------DRPNNYI 209
Query: 154 LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL 213
L E + + ++ +G + LY+ ++ L
Sbjct: 210 LTRESGFKVITELTKG------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263
Query: 214 V-NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-------------- 258
D I P+ Y + N+ I RS + + L
Sbjct: 264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHY--ILRSDYDWKTKRLTTPYIVCGQQGAKDW 321
Query: 259 -----VKDRLGWPNGIT-------LDVDNE-KLYWCDAKTDKIEMIDFDGN 296
K R+ P T +E Y+CD + I ++ G
Sbjct: 322 VDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR 372
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 43.2 bits (102), Expect = 6e-05
Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 39/244 (15%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLE----VSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174
+A L+ S++ KL+ V LD +V I
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----------------AIH 86
Query: 175 V-EHPDGVAVDWVARNLYWTDTGTDRI---------EVCRLEGTHRKVLVNTDLVEPRAI 224
P G ++ + L++ +T + RL RK ++PR +
Sbjct: 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146
Query: 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284
A ++ S K I + +++ G+ LD + ++LY +A
Sbjct: 147 VADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205
Query: 285 TDKIEMIDFDGNNRRELI---NENLPHVFGISLLGD--YVYWTDWQRRSIDRVNKITGND 339
+ I + D + ISL + TD + V + +
Sbjct: 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRN 262
Query: 340 REVI 343
++
Sbjct: 263 GNIL 266
Score = 43.2 bits (102), Expect = 7e-05
Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 22/232 (9%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+ L + D TN + +S + K V++ D + + + +
Sbjct: 133 KRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGGNIKLKTAIQNTG---KMS 187
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE------PRAITLSPAHGY 232
G+A+D + LY T+ + I + + K+L L++ I+L A
Sbjct: 188 TGLALDSEGKRLYTTNADGELITI---DTADNKILSRKKLLDDGKEHFFINISLDTARQR 244
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
F +D +++ +L K + + + Y + K+ +ID
Sbjct: 245 AFITDSKAAEV----LVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID 300
Query: 293 FDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ + P+ +S G +Y + Q+ + +VI
Sbjct: 301 AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK---STKQQEATQPDDVI 349
Score = 42.8 bits (101), Expect = 8e-05
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 21/153 (13%)
Query: 88 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147
T+ E+I+ T D + K + +++D ++ + TDS+ ++ V +D
Sbjct: 202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV--VD 259
Query: 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
+ +L + V + Y T ++ V ++
Sbjct: 260 TRNGNILA----------------KVAAPESLAVLFNPARNEAYVTHRQAGKVSV--IDA 301
Query: 208 THRKVLVNTDL-VEPRAITLSPAHGYLFWSDWN 239
KV+ D P ++ LS L+ S
Sbjct: 302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334
Score = 39.8 bits (93), Expect = 0.001
Identities = 34/203 (16%), Positives = 71/203 (34%), Gaps = 37/203 (18%)
Query: 99 TFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED 158
DG N+ K + G GLA+D ++LY T+++ + ++D K+
Sbjct: 168 VVDGGNIKLKTAIQNTG-KMSTGLALDSEGKRLYTTNADGE---LITIDTADNKI----- 218
Query: 159 IDQPRAIASYKLPTIEVEH-PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD 217
++ KL EH +++D + + TD+ + V ++ + +L
Sbjct: 219 ------LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV--VDTRNGNILAKVA 270
Query: 218 LVEPRAITLSPAHGYLFWSDWNEKR--------PKIERSLLNGGERVLLVKDRLGWPNGI 269
E A+ +PA + + + K+ ++ PN +
Sbjct: 271 APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-----------HPNSL 319
Query: 270 TLDVDNEKLYWCDAKTDKIEMID 292
L D + LY + +
Sbjct: 320 ALSADGKTLYVSVKQKSTKQQEA 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 9e-04
Identities = 56/363 (15%), Positives = 105/363 (28%), Gaps = 83/363 (22%)
Query: 12 KMMFITNTKWV--------NYIFLVVHFWYALSHHVAAQMLLFATSKDIRIANLSR---- 59
K++ T K V + H L+ L D R +L R
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLT 324
Query: 60 --PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCC--TFDGNNVGSKHN----V 111
P + I + + +G A +K D T +I + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEY--RKMFDRLS 379
Query: 112 I--TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL---DGKKRKV----LYWEDIDQP 162
+ + I L++ W NKL SL K+ + +Y E +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 163 --------RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+ Y +P + D + ++ + Y I G H K +
Sbjct: 440 ENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYS------HI------GHHLKNIE 485
Query: 215 NTDLVEP-RAITLSPAHGYL-FWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLD 272
+ + + R + +L F + E+ KI ++ + L
Sbjct: 486 HPERMTLFRMV-------FLDF--RFLEQ--KIRHDSTAWNASGSIL-NTL-------QQ 526
Query: 273 VDNEKLYWCDAKTDKIEMI----DFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRS 328
+ K Y CD ++ DF LI + I+L+ + + +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 329 IDR 331
+ R
Sbjct: 587 VQR 589
Score = 37.5 bits (86), Expect = 0.006
Identities = 40/323 (12%), Positives = 91/323 (28%), Gaps = 87/323 (26%)
Query: 62 KPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEM-----ISCC--TFDGNNVGSKHNVIT 113
K +++ +EE I+Y + S + M I ++ N V +K+NV
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-- 131
Query: 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTI 173
L + L N + + + G + + A+ +
Sbjct: 132 -----SRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWV---------ALDVCLSYKV 176
Query: 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGY 232
+ + + +W + LE + ++ + + +
Sbjct: 177 QCKMDFKI---------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 233 LFWSDWNE---KRPKIERSLL--------------NGGERVLLV-KDRLGWPNGITLDVD 274
K E LL N ++LL + + +T +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-----QVTDFLS 282
Query: 275 NEKLYWCDAKTDKIEMIDF-DGNNRRELIN----------ENLPHV------FGISLLGD 317
A T I + E+ + ++LP +S++ +
Sbjct: 283 A-------ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 318 YV-----YWTDWQRRSIDRVNKI 335
+ W +W+ + D++ I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTI 358
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 39.8 bits (92), Expect = 0.001
Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 35/204 (17%)
Query: 158 DIDQPRAIASYKLP---TIEVEHPDGVAVDWVARNLYWTDTGTDR----IEVCRLEGTHR 210
D + LP T+ + +AVD + +Y +D D I V G
Sbjct: 99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158
Query: 211 KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT 270
+VL + P I L + + V NGI
Sbjct: 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT-----------------VIRPHLGVNGIV 201
Query: 271 LDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDY-----------V 319
LD +NE LY + + I + +L + L +
Sbjct: 202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNI 261
Query: 320 YWTDWQRRSIDRVNKITGNDREVI 343
Y D +I + + ++
Sbjct: 262 YVGDLAHSAIGVITSADRAYKLLV 285
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 39.8 bits (92), Expect = 0.001
Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 33/207 (15%)
Query: 117 ITPDGLAI----DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPT 172
I P+GLA + + ++ K+ + L+ K+ V E I
Sbjct: 57 ILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT--------LD 108
Query: 173 IEVEHPDGVAVDWVARNLYW-----TDTGTDRIEVCRLEG-----THRKVLVNTDLVEPR 222
I +P G++ N + + +EV + + H K + + L
Sbjct: 109 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN 168
Query: 223 AITLSPAHGYLFWSDWNEKRPKIERSLLNGG-----------ERVLLVKDRLGWPNGITL 271
I + +D P ++ ++ G V +V + + NGI +
Sbjct: 169 DIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINI 228
Query: 272 DVDNEKLYWCDAKTDKIEMIDFDGNNR 298
D + +Y + KI + + N
Sbjct: 229 SPDGKYVYIAELLAHKIHVYEKHANWT 255
Score = 27.8 bits (61), Expect = 6.3
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIA 166
+ V+ G +G+ I + +Y + +K+ V
Sbjct: 211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV--------- 261
Query: 167 SYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
T D ++VD V +L+
Sbjct: 262 -LSFDT----LVDNISVDPVTGDLWVGCHP 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 65/158 (41%)
Query: 104 NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPR 163
N G+K+ V++ G LY L+ RK +DQ R
Sbjct: 372 N-GAKNLVVS-------GPPQS-----LY------------GLNLTLRKAKAPSGLDQSR 406
Query: 164 AIASYKLPTIEVE--------H-------PDGVAVDWVARNLYW-----------TDTGT 197
S + H D + D V N+ + T G+
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 198 DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFW 235
D + L G+ ++ +V I P W
Sbjct: 467 D---LRVLSGS-----ISERIV--DCIIRLPVK----W 490
Score = 34.3 bits (78), Expect = 0.067
Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 74/218 (33%)
Query: 152 KVLYWEDI---DQ---PRAIASYKLPTIEVEHPDGV-----AVDWVARNLYWTDTGTDRI 200
VL++ I P + +E+ +GV ++ + +
Sbjct: 301 TVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-----------SNLTQE 347
Query: 201 EV-CRLEGT------HRKV---LVNTDLVEPRAITLS--PAHGYLFWSDW-NEKRP---- 243
+V + T ++V LVN + + +S P Y K P
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNG----AKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 244 --KIERSLLNGGERVLLVKDR---LGWP----------NGITLDVDNEKLYWCDAKTDKI 288
+I S ER L +R + P + I D+ + + +AK +I
Sbjct: 404 QSRIPFS-----ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDIQI 457
Query: 289 EMID-FDGNNRREL---INENLPHVFGISLLGDYVYWT 322
+ D FDG++ R L I+E + ++ V W
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDC----IIRLPVKWE 491
Score = 33.9 bits (77), Expect = 0.11
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 22 VNYIF-LVVHFWYALSHHVAAQMLLFATSKDIRIANLSRPLKP---VTIIK--DLEEGAA 75
V+ I L V W + A +L F + L+ K V +I L+
Sbjct: 480 VDCIIRLPVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 76 IDYYYKK 82
DY +K+
Sbjct: 539 DDYGFKQ 545
Score = 32.3 bits (73), Expect = 0.33
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 27/93 (29%)
Query: 61 LKPVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISC-CTFDGNNVGSKHNVITNGL 116
L P + I KDL + V + + ++ I TFDG+++ I+ +
Sbjct: 432 LVPASDLINKDLVKNN----------VSF--NAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 117 ITPDGLAIDWLTEK-LYWTDSETNKLEVSS-LD 147
+D + + W T + + + LD
Sbjct: 480 -------VDCIIRLPVKWE--TTTQFKATHILD 503
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/184 (10%), Positives = 36/184 (19%), Gaps = 24/184 (13%)
Query: 131 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG--VAVDWVAR 188
+ ++D N+ S DG+ + G +A R
Sbjct: 42 VIFSDVRQNRTWAWSDDGQLS--PEMHPSHHQNGHC---------LNKQGHLIACSHGLR 90
Query: 189 NLYWTDTGTDRIEV-CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIER 247
L E + N + P Y ++E
Sbjct: 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL 150
Query: 248 SL-----LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN----NR 298
L + PNG+ L D + + +
Sbjct: 151 PGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQ 209
Query: 299 RELI 302
Sbjct: 210 GVHF 213
Score = 37.3 bits (87), Expect = 0.005
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286
PA + +SD ++ + +G + NG L+ L C
Sbjct: 36 VPARSAVIFSDV--RQNRTWAWSDDGQLSPEMHPS--HHQNGHCLNKQG-HLIACSHGLR 90
Query: 287 KIEMIDFDGNNRRELIN 303
++E G + +
Sbjct: 91 RLERQREPGGEWESIAD 107
Score = 32.3 bits (74), Expect = 0.19
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 28/110 (25%)
Query: 106 GSKHNVITNGLITPDGLAI--DWLTEKLYWTDSETNKLEVSSLDG----KKRKVLYWEDI 159
+ + P+GLA L +D+ N L+ + + V +
Sbjct: 161 DGTLSAPIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNARGETEYQGVHF---- 213
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH 209
T+E DG+ VD A L W + D + V +G
Sbjct: 214 ------------TVEPGKTDGLRVD--AGGLIWA-SAGDGVHVLTPDGDE 248
Score = 29.6 bits (67), Expect = 1.6
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 247 RSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL 306
L G + D W G + + D + ++ DG E+ +
Sbjct: 11 LDLFPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSH- 69
Query: 307 PHVFGISLLGD-YVYWTDWQRRSIDRVNKITGNDREVIIER 346
H G L ++ R ++R + G E I +
Sbjct: 70 -HQNGHCLNKQGHLIACSHGLRRLERQREPGGE-WESIADS 108
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 38.5 bits (89), Expect = 0.003
Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 23/214 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
P + EK Y T + + ++ K ++ + + + ++
Sbjct: 86 PRYIHFLS-DEKAYVTQIWDYR--IFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKY 142
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP-------AHG 231
V + DT TD++ ++ + +P ++ + G
Sbjct: 143 VYVNCWSYQNRILKIDTETDKVV--------DELTIGI---QPTSLVMDKYNKMWTITDG 191
Query: 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKIEM 290
S + + P + R K +LG WP+ + L+ + LYW + ++ +
Sbjct: 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPV 251
Query: 291 IDFDGNNRRELINE-NLPHVFGISLLGDYVYWTD 323
R L + ++ VY D
Sbjct: 252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285
Score = 35.4 bits (81), Expect = 0.023
Identities = 32/264 (12%), Positives = 69/264 (26%), Gaps = 39/264 (14%)
Query: 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108
S I ++ K V I I + + T I +
Sbjct: 63 SHVIFAIDI-NTFKEVGRITGFTSPRYIHFLSDEKAY-VTQIWDYRIFIINPKTYEITGY 120
Query: 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ + + + +Y + +D + KV+
Sbjct: 121 IECPDMDMESGSTEQMVQYGKYVYVNCWSYQN-RILKIDTETDKVVD------------- 166
Query: 169 KLPTIEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL-VNTDLVE------ 220
+ + P + +D ++ G E + T VE
Sbjct: 167 ---ELTIGIQPTSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK 222
Query: 221 ----PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276
P + L+ L+W + + R +E + + + G+T++ +N
Sbjct: 223 LGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTK---YYGLTVNPNNG 279
Query: 277 KLYWCDAK----TDKIEMIDFDGN 296
++Y DA + G
Sbjct: 280 EVYVADAIDYQQQGIVYRYSPQGK 303
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 38.1 bits (88), Expect = 0.003
Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 45/205 (21%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
++ + +LY D + V S G ++ D +
Sbjct: 82 TYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFK-------------WL 128
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
V VD +Y+TD T G D
Sbjct: 129 YAVTVDQRTGIVYFTDVSTLY----------------------------DDRGVQQIMDT 160
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN- 297
++K ++ + + E LL+K+ L P G + D+ + + + +I +G
Sbjct: 161 SDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK 219
Query: 298 -RRELINENLPHVFGISLLGDYVYW 321
E++ +P+ I D +W
Sbjct: 220 GTAEVL-VKIPNPGNIKRNADGHFW 243
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 36.6 bits (85), Expect = 0.008
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 27/175 (15%)
Query: 131 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190
L+ D + + + K+ K + P AI H DG L
Sbjct: 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI---------HKDG--------RL 100
Query: 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP------AHGYLFWSDWNEKRPK 244
+ G + T + D++E + + G +++D+
Sbjct: 101 FVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159
Query: 245 IERSL---LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN 296
+ V + + NGI L D + L+ + +++ I + +
Sbjct: 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214
Score = 33.9 bits (78), Expect = 0.064
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 28/128 (21%)
Query: 111 VITNGL-ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYK 169
+ NG+ ++ D + L+ T++ ++ ++
Sbjct: 182 SVANGIALSTDE-------KVLWVTETTA------------NRLHRI-ALEDDGVTIQPF 221
Query: 170 LPTIEVEH-----PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-RKVLVNTDLVEPRA 223
TI PD +D NLY G R+ V G ++L+
Sbjct: 222 GATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHML 280
Query: 224 ITLSPAHG 231
+ P
Sbjct: 281 RSTHPQFI 288
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 35.4 bits (82), Expect = 0.022
Identities = 26/172 (15%), Positives = 44/172 (25%), Gaps = 31/172 (18%)
Query: 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE------PRAITLS 227
++ + R L+ DRI + + V + V PR +
Sbjct: 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186
Query: 228 PAHGYLF----------WSDWNEKRPKIER----SLLNGGERVLLVKDRLGWPNGITLDV 273
P Y + + + IE ++ W I +
Sbjct: 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF------SDTRWAADIHITP 240
Query: 274 DNEKLYWCDAKTDKIEMIDFDGNNRRELI-----NENLPHVFGISLLGDYVY 320
D LY CD I + + E P F + G Y+
Sbjct: 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI 292
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 35.1 bits (81), Expect = 0.026
Identities = 31/192 (16%), Positives = 47/192 (24%), Gaps = 30/192 (15%)
Query: 128 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG--VAVDW 185
L W+D + V + + A V +
Sbjct: 56 QRTLVWSDLVGRR--VLGWREDGTVDVLLDATAFTNGNA---------VDAQQRLVHCEH 104
Query: 186 VARNLY-WTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA---ITLSPAHGYLFWSDWNEK 241
R + G + V R G R N DL+ R P G S
Sbjct: 105 GRRAITRSDADGQAHLLVGRYAG-KRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPA 162
Query: 242 RPKIERSLL---NGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID---FDG 295
P++ + L L PNG+ D + LY ++ F
Sbjct: 163 DPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW 222
Query: 296 N-----NRRELI 302
+RR
Sbjct: 223 RDGALHDRRHFA 234
Score = 32.8 bits (75), Expect = 0.16
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286
A L WSD ++ +G VLL + NG +D +L C+
Sbjct: 53 WEAQRTLVWSDL--VGRRVLGWREDGTVDVLLDAT--AFTNGNAVDAQQ-RLVHCEHGRR 107
Query: 287 KIEMIDFDGN 296
I D DG
Sbjct: 108 AITRSDADGQ 117
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 35/108 (32%)
Query: 111 VITNGL-ITPDGLAIDWLTEKLYWTDSETNKLEVSSL------DGK--KRKVLYWEDIDQ 161
NGL +PD + LY + + + DG R+
Sbjct: 188 DHPNGLAFSPDE-------QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA------ 234
Query: 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH 209
++ PDG VD W+ + + V +G
Sbjct: 235 ----------SVPDGLPDGFCVD--RGGWLWS-SSGTGVCVFDSDGQL 269
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 34.2 bits (78), Expect = 0.054
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 41/236 (17%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
+ + G + + +A+D E LY+ DS N +
Sbjct: 188 IGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNV 247
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI----- 200
+ V + ++ ++ + P + V N Y +D +
Sbjct: 248 KTQE---VTLIKQLELSGSLGTN-------PGPYLIYYF-VDSNFYMSDQNLSSVYKITP 296
Query: 201 --EVCRLEGTHRK------VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG 252
E G+ + + +P +T+ G + D + + + +
Sbjct: 297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGY-CLRKLDILD 354
Query: 253 GERVLLV--------------KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294
G + + +P I D + + +A I +
Sbjct: 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE 409
Score = 34.2 bits (78), Expect = 0.062
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 19/182 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
G+A + + ++ + S+D K ++ A+ + +
Sbjct: 133 MWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTK------DKQRV 185
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
+ + +Y + T L +T + A+ L +L++ D
Sbjct: 186 YSIGWEG-THTVYVYMKASGWA------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS 238
Query: 239 NEKRPKIERS----LLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294
N+ + L + P I VD+ Y D + I D
Sbjct: 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-FYMSDQNLSSVYKITPD 297
Query: 295 GN 296
G
Sbjct: 298 GE 299
Score = 33.8 bits (77), Expect = 0.080
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 20/130 (15%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH----------RKVLVNTDLVEPRAITL 226
+ G+A + R+ + ++ K V D +I
Sbjct: 132 YMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGW 190
Query: 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286
H + + P L + G + LD E LY+ D+ +
Sbjct: 191 EGTHTVYVYMKASGWAPTRIGQLGSTF---------SGKIGAVALDETEEWLYFVDSNKN 241
Query: 287 KIEMIDFDGN 296
Sbjct: 242 FGRFNVKTQE 251
Score = 29.5 bits (66), Expect = 1.6
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYW 321
+ + GI +N + ++ +I D N + ++ VY
Sbjct: 129 KFKYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYS 187
Query: 322 TDW 324
W
Sbjct: 188 IGW 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 33.4 bits (77), Expect = 0.095
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN-----NRRELI 302
L V D++ NG+ +D++ Y+ D+ + ++ D+D NRR +
Sbjct: 135 LFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY 192
Score = 30.7 bits (70), Expect = 0.58
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 22/83 (26%)
Query: 112 ITNGL-ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
I+NGL + D + Y+ DS + ++ D + + I R++ YKL
Sbjct: 150 ISNGLDWSLDH-------KIFYYIDSLSYSVDAFDYDLQTGQ------ISNRRSV--YKL 194
Query: 171 PTIEVEHPDGVAVD-----WVAR 188
E PDG+ +D WVA
Sbjct: 195 EKEEQI-PDGMCIDAEGKLWVAC 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 32.8 bits (75), Expect = 0.14
Identities = 29/207 (14%), Positives = 57/207 (27%), Gaps = 36/207 (17%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+G + ++ ++ L K+ V I +P +P
Sbjct: 27 KNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-----ICKPEVNGYGGIPAGCQCDR 80
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT----------DLVEPRAITL-- 226
D N + + V + +GT ++ D L
Sbjct: 81 DA--------NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI 132
Query: 227 -SPAHGYLFWSDWNEKRPKIER-SLLNGGERVLLVKDRLGWPNGITL----DVDNEKLYW 280
+PA + K +++ V +PNGI + D +L
Sbjct: 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIV 192
Query: 281 CDAKTDKIEMIDFDGN----NRRELIN 303
+ T K+ D G N++ +
Sbjct: 193 AETPTKKLWSYDIKGPAKIENKKVWGH 219
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 33.0 bits (74), Expect = 0.15
Identities = 29/207 (14%), Positives = 47/207 (22%), Gaps = 33/207 (15%)
Query: 99 TFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL---- 154
N K + I + Y+ + S D K++ +
Sbjct: 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN 351
Query: 155 ------YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT 208
D A P V + + Y+ D +
Sbjct: 352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCV-------- 403
Query: 209 HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG 268
RKV T + +D N+ +G L R +G
Sbjct: 404 -RKVTPE-----GIVSTYAGRGASTSLADGNQWGTD------DGD---LREVARFRDVSG 448
Query: 269 ITLDVDNEKLYWCDAKTDKIEMIDFDG 295
+ D E Y D I I +
Sbjct: 449 LVYDDVKEMFYVHDQVGHTIRTISMEQ 475
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 32.7 bits (75), Expect = 0.16
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 255 RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN-----NRREL 301
+V + + PN I D Y+ D K +++ + D + E+
Sbjct: 170 KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV 221
Score = 31.1 bits (71), Expect = 0.44
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 35/90 (38%)
Query: 112 ITNGLI-TPDGLAIDWLTEKLYWTDSETNKLEVSSLD-------GKKRKVLYWEDIDQPR 163
I N + +PDG Y+ D++ N+L LD GK + I
Sbjct: 180 IPNSICFSPDG-------TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-- 230
Query: 164 AIASYKLPTIEVEHPDGVAVD-----WVAR 188
DG D W AR
Sbjct: 231 -------------GMDGSVCDAEGHIWNAR 247
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 31.8 bits (72), Expect = 0.29
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV-----EPRAITLSPAHG 231
G+ D LY D +++ R + LV + PR + + P
Sbjct: 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN 205
Query: 232 YLF 234
YL+
Sbjct: 206 YLY 208
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 30.5 bits (69), Expect = 0.79
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 13/71 (18%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE-------------PRA 223
H V + + L D GTD+I + L + PR
Sbjct: 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRH 215
Query: 224 ITLSPAHGYLF 234
+ + + +
Sbjct: 216 LIFNSDGKFAY 226
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 3.8
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 115 GLIT-PDGLAIDWLTEKLY--WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
G I+ +G L + Y W DS+T + V D K + Y I + +
Sbjct: 859 GFISYHNGN----LKGRPYTGWVDSKTKEP-VDDKDVKAK---YETSI-----LEHSGIR 905
Query: 172 TIEVEHPDGVAVDW 185
IE E +G +
Sbjct: 906 LIEPELFNGYNPEK 919
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas
campestris}
Length = 243
Score = 28.3 bits (62), Expect = 3.9
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 87 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146
+ GT +I D V G + ++W+ +L T+++ +
Sbjct: 118 YMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIAR--I 175
Query: 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193
D KV+ W D+ A L + +G+A D L+ T
Sbjct: 176 DPASGKVVAWIDLQALVPDAD-ALTDSTNDVLNGIAFDAEHDRLFVT 221
Score = 27.5 bits (60), Expect = 6.9
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 21/136 (15%)
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEV-------------CR 204
D+ A ++ P +G A+ +LY +D GT I
Sbjct: 91 DLATLTPRARFRYP------GEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVT 143
Query: 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG 264
G L + V + + D + L + D
Sbjct: 144 AGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN 203
Query: 265 -WPNGITLDVDNEKLY 279
NGI D ++++L+
Sbjct: 204 DVLNGIAFDAEHDRLF 219
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 28.4 bits (62), Expect = 4.4
Identities = 32/276 (11%), Positives = 79/276 (28%), Gaps = 61/276 (22%)
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD---GKKRKVLYWEDI 159
++ N T DG +KL + L+ + ++ +
Sbjct: 29 TDIICHRNYFYQKCFTQDG-------KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD 81
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
+ S D R ++ + ++V + + +
Sbjct: 82 NTFGGFIS----------TDE-------RAFFYVKNELNLMKVDLETLEEQVIYTVDEEW 124
Query: 220 EPRAITLSPAHGYLFWSDW--------------------NEKRPKIERSLLNGGERVLLV 259
+ ++ + ++ + + GE ++
Sbjct: 125 KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184
Query: 260 KDRLGWPNGITLDVDNEKLYWC-----DAKTDKIEMIDFDGNNRRELI----NENLPHVF 310
+D + I D+ + +C D ++ +++ DG+N R++ E+ H F
Sbjct: 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244
Query: 311 GISLLGDYVYWTDW----QRRSIDRVNKITGNDREV 342
G + + + R I + N T + EV
Sbjct: 245 -WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV 279
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 28.2 bits (63), Expect = 4.6
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN---TDLVEPRAITLSPAHGYL 233
DG LY ++ G + + V + L+ T+ PR L P ++
Sbjct: 248 SHDG-------HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV 300
Query: 234 F 234
Sbjct: 301 V 301
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 27.7 bits (61), Expect = 5.0
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180
G + L E+ L+ +L G+ + + + ++ +G
Sbjct: 177 GAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEM--------SLTKGSRGLSHNIKQAEG 228
Query: 181 VAVDWVARNLY 191
VA+D + N+Y
Sbjct: 229 VAMD-ASGNIY 238
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 27.9 bits (61), Expect = 5.0
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 18/88 (20%)
Query: 142 EVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201
E+ +D K ++ + I + +D + D G +
Sbjct: 287 EIWVMDTKTKQRVA----------------RIPGRDALSMTIDQQRNLMLTLDGGNVNVY 330
Query: 202 VCRLEGTHRKVLVNTDLVEPRAITLSPA 229
+ K+L + ++ +
Sbjct: 331 D--ISQPEPKLLRTIEGAAEASLQVQFH 356
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 28.3 bits (63), Expect = 5.1
Identities = 12/132 (9%), Positives = 38/132 (28%), Gaps = 10/132 (7%)
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
+ + W+++ + + + + +++ VL + Y++
Sbjct: 10 LFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI- 68
Query: 172 TIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA--ITLSP 228
PD + + + T + ++ + L ++ + P
Sbjct: 69 -----SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP 123
Query: 229 AHGYL-FWSDWN 239
L F + N
Sbjct: 124 KGQQLIFIFENN 135
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 27.9 bits (62), Expect = 5.7
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
I NG + +W++ + Y S N + + +++ + + + ++Y L
Sbjct: 9 ILNGTFSYKTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGL 67
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl
transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Length = 268
Score = 27.2 bits (59), Expect = 7.9
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 131
EG + Y+ K G M++ DG + V G ++ +
Sbjct: 137 EGWGLCYWNGK---LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVI 193
Query: 132 YWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191
Y ++ + +D V+ D + ++ E +G+AV+ + ++
Sbjct: 194 YANIWHSSDVLE--IDPATGTVVGVIDASALTRAVAGQVTNPE-AVLNGIAVEPGSGRIF 250
Query: 192 WT 193
T
Sbjct: 251 MT 252
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 27.3 bits (61), Expect = 8.7
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEV--EHPDGVAVD 184
G +R + + P ++ +P I + D A++
Sbjct: 230 QAGVRRVTVK-APAELPYLALAWHVPAIVDLDKSRDAYALE 269
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 27.5 bits (60), Expect = 8.7
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 300 ELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVII 344
E +NE +G Y + + +D V + GN+ +
Sbjct: 178 ESMNEVFDGNYGNPNSAYYTNLNAYNQIFVDTVRQTGGNNNARWL 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.443
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,987,020
Number of extensions: 367803
Number of successful extensions: 1197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 144
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)