RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13635
(357 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 174 bits (442), Expect = 3e-53
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 19/247 (7%)
Query: 99 TFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW 156
+ N + + GLA D + + +YWTD + +SL G + +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR 75
Query: 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT 216
+D+ P+G+A+D + R ++WTD+ DRIEV +++GT R+VL +T
Sbjct: 76 QDLG----------------SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276
LV PR I P G L+W+DWN PKIE S ++G R +L +D LG PNG+T D +
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKIT 336
+L W DA T + E ++ RR+++ E L + F ++ G +Y+TDW+ S+ ++
Sbjct: 180 QLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238
Query: 337 GNDREVI 343
+ +
Sbjct: 239 SKEMDTF 245
Score = 45.6 bits (107), Expect = 3e-06
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
LF +R +ER+ + E + G+ D ++ +YW D I
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64
Query: 293 FDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIERSC 348
G +I ++L GI+L LG ++WTD Q I+ R +
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 153 bits (386), Expect = 6e-45
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 15/244 (6%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
S++ + L L + + ++YW+D + + LD Y I
Sbjct: 19 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----- 73
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+++ PDG+AVDW+ N+YWTD+ + V +G RK L + +PRAI
Sbjct: 74 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 126
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ P HG+++W+DW KI++ LNG + LV + + WPNGITLD+ + +LYW D+K
Sbjct: 127 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 286 DKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
I ID +G NR+ ++ + L H F +++ D V+WTD +I N++TG+D ++
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245
Query: 344 IERS 347
E
Sbjct: 246 AENL 249
Score = 141 bits (357), Expect = 1e-40
Identities = 79/271 (29%), Positives = 121/271 (44%), Gaps = 21/271 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 103
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 4 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 104 NVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 63 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 123 RAIV----------------VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 167 NGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224
Query: 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
D + I + + L+ ENL +
Sbjct: 225 DIINEAIFSANRLTGSDVNLLAENLLSPEDM 255
Score = 59.9 bits (144), Expect = 6e-11
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 197 TDRIEVCR--LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-- 252
T+R EV + L+ + L+ +L A+ A ++WSD +++ I + L+
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAH 63
Query: 253 --GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL--PH 308
++ + P+G+ +D + +YW D+ + + D G R+ L EN P
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 309 VFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340
+ + ++YWTDW + + + G D
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155
Score = 59.6 bits (143), Expect = 9e-11
Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
+ +A+ + ++ + AI + WTD GT G N +++
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK--GGLNGVDIYSL 158
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
+T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--------- 209
Query: 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226
HP +AV ++WTD + I L+ +L+ P + L
Sbjct: 210 -----HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
Score = 51.5 bits (122), Expect = 5e-08
Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 5/168 (2%)
Query: 3 YDDRNFYVHKMMFITNTKWVNYIFLVVHFWYALSHHVAAQMLLFATSKDIRIANLSRPLK 62
D V + + + V M +I
Sbjct: 94 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153
Query: 63 PVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPD 120
+ + ++++ I + W D IS +G N ++ +
Sbjct: 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAH 210
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
++ +K++WTD + ++ L E++ P + +
Sbjct: 211 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
Score = 34.9 bits (79), Expect = 0.011
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 283 AKTDKIEMIDFDGNNRRELINENLPHVFGI--SLLGDYVYWTDWQRRSIDRVNKITGNDR 340
++ + D + LI NL +V + + + +YW+D +R I +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 65
Query: 341 EVIIERSCTGVTR 353
+
Sbjct: 66 SSYDTVISRDIQA 78
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 41.6 bits (97), Expect = 9e-05
Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 19/206 (9%)
Query: 117 ITPDGLAI----DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPT 172
I P+GLA + + ++ K+ + L+ K+ V E I I+S+
Sbjct: 42 ILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHG 101
Query: 173 IEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG--THRKVLVNTDLVEPRAITLSPA 229
I D V + + + + + E H K + + L I
Sbjct: 102 ISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP 160
Query: 230 HGYLFWSDWNEKRPKIERSLLNGG-----------ERVLLVKDRLGWPNGITLDVDNEKL 278
+ +D P ++ ++ G V +V + + NGI + D + +
Sbjct: 161 EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYV 220
Query: 279 YWCDAKTDKIEMIDFDGNNRRELINE 304
Y + KI + + N +
Sbjct: 221 YIAELLAHKIHVYEKHANWTLTPLRV 246
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 37.1 bits (84), Expect = 0.002
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
++ + L +L L P + +D D +Y D D++
Sbjct: 190 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVV 248
Query: 290 MIDFDGNNRR 299
+ ++
Sbjct: 249 KLTSLEHHHH 258
Score = 35.6 bits (80), Expect = 0.007
Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 23/242 (9%)
Query: 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIA-SYKLPT 172
+ ++P G+A+D ++ ++ + VL + + QP+ +A
Sbjct: 11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV 70
Query: 173 IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGY 232
+ + V N L + + D R + L+
Sbjct: 71 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 130
Query: 233 LFWSDWNEKRPKIERSLLNGGE--------------------RVLLVKDRLGWPNGITLD 272
+ ++ N G +V+L + P GI
Sbjct: 131 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA-V 189
Query: 273 VDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGD-YVYWTDWQRRSIDR 331
+ +Y + T+++ + L L +++ D VY D + +
Sbjct: 190 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249
Query: 332 VN 333
+
Sbjct: 250 LT 251
Score = 29.1 bits (63), Expect = 0.80
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR 210
P VAVD R +Y D G DR+ H
Sbjct: 225 TPLAVAVD-SDRTVYVADRGNDRVVKLTSLEHHH 257
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 37.0 bits (84), Expect = 0.002
Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%)
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
I+ + +GL D +L+ D + + + K+ K + P AI +K
Sbjct: 35 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG 93
Query: 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231
+ V + ++ D ++ +E ++ + + +
Sbjct: 94 RLFVCYLGD---FKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFR 149
Query: 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291
+ + V + + NGI L D + L+ + +++ I
Sbjct: 150 GYSTNPLGGVYY-----VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRI 204
Query: 292 DFDGN--------NRRELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVNK 334
+ + + D +Y + + + NK
Sbjct: 205 ALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 256
Score = 35.1 bits (79), Expect = 0.011
Identities = 18/178 (10%), Positives = 37/178 (20%), Gaps = 2/178 (1%)
Query: 180 GVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239
G+ D L+ D I E K + P AI + +
Sbjct: 44 GLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 102
Query: 240 EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299
K + G+ + + + L I V + K + G
Sbjct: 103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 162
Query: 300 ELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRRTR 357
+ + + + + +E +
Sbjct: 163 SPDFRTVTPIIQNI-SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 219
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 35.8 bits (81), Expect = 0.005
Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 158 DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD 217
++ + I S+ + T + +A ++ T+ I +G +
Sbjct: 14 ELAPAKIITSFPVNT----FLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG 68
Query: 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK 277
+ + + + + P + +G LL + NGIT D +
Sbjct: 69 --KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-Q 125
Query: 278 LYWCD----------AKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRR 327
D + R P G+ G+++Y ++ ++
Sbjct: 126 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM 185
Query: 328 SI 329
+
Sbjct: 186 LL 187
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 32.3 bits (72), Expect = 0.081
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH 209
P GVAV+ ++ DT RI++ EG
Sbjct: 24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRF 55
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Thermus
thermophilus [TaxId: 274]}
Length = 276
Score = 30.6 bits (68), Expect = 0.24
Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 5/147 (3%)
Query: 8 FYVHKMMFITNTKWVNYIFLVVHFWYALSHHVAAQMLLFATSKDIRIANLSRPLKPVTII 67
+ + + + + + V + R+ L +P +
Sbjct: 85 LFAPGVEEMYPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGE 144
Query: 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127
KD ++ + MV E++ T + + + A
Sbjct: 145 KDYQQ-----LLVVRRMVRDLGFPVEVVGVPTVREEDGLALSSRNVYLSPETRKKAPVLY 199
Query: 128 TEKLYWTDSETNKLEVSSLDGKKRKVL 154
L + V+ + L
Sbjct: 200 RALLAMREVAGQGGSVAEALRAGEEAL 226
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 295
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/199 (10%), Positives = 42/199 (21%), Gaps = 17/199 (8%)
Query: 125 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184
D + +W + +L L ++ V A+A +
Sbjct: 26 DPASGTAWWFNILERELHELHLASGRKTV--HALPFMGSALAKIS--------DSKQLIA 75
Query: 185 WVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPK 244
LE + P+ + +
Sbjct: 76 SDDGLFLRDTATGVLTLHAELESDLP-------GNRSNDGRMHPSGALWIGTMGRKAETG 128
Query: 245 IERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE 304
+V + + PN I D Y+ D K +++ + D
Sbjct: 129 AGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188
Query: 305 NLPHVFGISLLGDYVYWTD 323
+ G D
Sbjct: 189 EVFIDSTGIKGGMDGSVCD 207
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 30.1 bits (66), Expect = 0.44
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL--------PHVFGISLL 315
P + DN Y + I ID D N + + F IS
Sbjct: 40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 99
Query: 316 GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRRT 356
G VY T + ++ + EV RT
Sbjct: 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 140
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium
vinosum [TaxId: 1049]}
Length = 130
Score = 27.7 bits (61), Expect = 1.2
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 274 DNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSI 329
+ C A + ++D +R N+ F IS LG V R +
Sbjct: 71 YELDMVVCVAAAQRRGIVDEGEASRNGKDATNIHPKFRISGLGQLVEAAIQADRLV 126
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 28.3 bits (63), Expect = 1.6
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE-PRAITLSPAHGYLFW 235
+ D D+ + T ++R L GT R + R A +
Sbjct: 177 NLDNTDADYTGKYATSTCYNSERAVD--LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI 234
Query: 236 SDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294
D K P ++ + R + V P+G+ D + + + +I D
Sbjct: 235 GD--SKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAID 288
>d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein
D, TusD {Escherichia coli [TaxId: 562]}
Length = 128
Score = 26.9 bits (59), Expect = 2.2
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSI 329
L C A + ++D R L + NL F +S LG + R +
Sbjct: 74 ALNICVAAALRRGVVDETEAGRLGLASSNLQQGFTLSGLGALAEASLTCDRVV 126
>d1koea_ d.169.1.5 (A:) Endostatin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 172
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 139
F G+ + D L +K W S+ +
Sbjct: 81 FSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPS 120
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp.,
strain b0618 [TaxId: 1409]}
Length = 104
Score = 26.0 bits (57), Expect = 3.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPD 179
R+V+ + + D+ + P VE P+
Sbjct: 5 RQVVGFFESDESKYSNDIDFPGFMVEVPN 33
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 26.2 bits (56), Expect = 6.1
Identities = 4/50 (8%), Positives = 23/50 (46%)
Query: 251 NGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
+GG+ + ++ P+ + + ++ + + + + ++ N +++
Sbjct: 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQ 304
>d1n9ba_ e.3.1.1 (A:) beta-Lactamase, class A {Klebsiella
pneumoniae, SHV-2 [TaxId: 573]}
Length = 265
Score = 26.0 bits (56), Expect = 6.2
Identities = 8/92 (8%), Positives = 23/92 (25%), Gaps = 6/92 (6%)
Query: 140 KLEVSSLDGKKRKVLYWEDIDQPRAIAS-YKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198
++ + +D + L D+ + S +K+ V A +
Sbjct: 18 RVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGA-----VLARVDAGDEQLERKIHY 72
Query: 199 RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230
R + + + + +
Sbjct: 73 RQQDLVDYSPVSEKHLADGMTVGELCAAAITM 104
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 25.7 bits (55), Expect = 9.7
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
R I + A G W P++ + + + W + + + + +L
Sbjct: 77 RVIAVDAASGKELW----RYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIAL 132
Query: 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITG 337
DAKT K + + P V ++ R + + TG
Sbjct: 133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG 188
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 25.6 bits (54), Expect = 9.8
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 7/139 (5%)
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
PR + + + + V + + +D
Sbjct: 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF------SDTR 230
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-VKDRLGWPNGITLDVDNEKL 278
I ++P +L+ D + +G + P G +D + L
Sbjct: 231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 290
Query: 279 YWCDAKTDKIEMIDFDGNN 297
K+ I + + G
Sbjct: 291 IAAGQKSHHISVYEIVGEQ 309
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.443
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,501,825
Number of extensions: 72455
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 45
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)