BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1364
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 117/245 (47%), Gaps = 37/245 (15%)
Query: 187 EREREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVM-KPALG-------TRKC-NCRQ 237
+R R RG +I ++ +LEELY G ++ NK ++ K G +KC +C
Sbjct: 3 QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNG 62
Query: 238 E---MQTRQLGPGRFQMMQ--QTVCDEC--------PNVRFK--------NEEHHLEVEI 276
+ TRQ+GP M+Q QT CD C P R K NE LEV +
Sbjct: 63 QGIKFVTRQMGP----MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHV 118
Query: 277 EMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTG 336
E GMKDGQ+ F E + D PGD++F + PH F+R GDDL I L A+ G
Sbjct: 119 EPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAG 178
Query: 337 FKFDIDQLDGR--KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNE 394
+F ++ + G K+ + ++ PG R + +GMP G L I F ++ P+N
Sbjct: 179 GEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP-IPKYGGYGNLIIKFTIKDPENH 237
Query: 395 LSEEE 399
+ EE
Sbjct: 238 FTSEE 242
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 136/315 (43%), Gaps = 47/315 (14%)
Query: 85 ASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSD 144
A + +D Y +LGV D IK+AYR LA+K HPD + +D A+AKF++L A+E+L D
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAWEVLKD 82
Query: 145 EKKRQRYDQCGME------CVKKEGMMEGMDPXXXXXXXXXXXXXXENERERE-VARGAN 197
E++R YDQ +++ + ++R R+ ARG +
Sbjct: 83 EQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHD 142
Query: 198 IDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVC 257
++I++ V LEE ++ N PV F M++
Sbjct: 143 LEIEVAVFLEETLAEQTRTISYNLPVYN----------------------VFGMIE---- 176
Query: 258 DECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRFE 316
E P L V+I G+ DGQ+ + +G P +G P GDL I PHP F+
Sbjct: 177 SETPKT--------LNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFD 228
Query: 317 RRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENN 376
G +L + ++ +A G K + L I + + G R+R K +G+ S +
Sbjct: 229 IVGHNLEIVLPLAPWEAALGAKVTVPTLK-ESILLTVPPGSQAGQRLRIKGKGLVSKTHT 287
Query: 377 NAKGVLYITFDVEFP 391
G L+ + P
Sbjct: 288 ---GDLFAVIKIVMP 299
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 264 RFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDG-EPGDLIFHIRTLPHPRFERRGDDL 322
+ +NEE+ +EVEI+ G KDG + ++ EG+ G PGDL+ I+T HPRF R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 323 YTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVL 382
+TI L ALTGF + LD R + + ++I P R NEG P KG L
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDL 155
Query: 383 YITFDVEFPKNELSEEEK 400
+ FD+ FPK+ E++K
Sbjct: 156 ILEFDICFPKSLTPEQKK 173
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 201 DLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVCDEC 260
DL V+LEE+Y+G C + ++ ++L P
Sbjct: 17 DLRVSLEEIYSG--------------------CTKKMKISHKRLNPD------------- 43
Query: 261 PNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGD 320
+NE+ L +E++ G K+G + F EG+ + P D++F ++ PH F+R G
Sbjct: 44 -GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 102
Query: 321 DLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKG 380
D+ ISL++AL G ++ LDGR I V + + PG R + EG+P + +G
Sbjct: 103 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 162
Query: 381 VLYITFDVEFP 391
L I F+V FP
Sbjct: 163 DLIIEFEVIFP 173
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 201 DLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVCDEC 260
DL V+LEE+Y+G C + ++ ++L P
Sbjct: 10 DLRVSLEEIYSG--------------------CTKKMKISHKRLNPD------------- 36
Query: 261 PNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGD 320
+NE+ L +E++ G K+G + F EG+ + P D++F ++ PH F+R G
Sbjct: 37 -GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 95
Query: 321 DLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKG 380
D+ ISL++AL G ++ LDGR I V + + PG R + EG+P + +G
Sbjct: 96 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 155
Query: 381 VLYITFDVEFP 391
L I F+V FP
Sbjct: 156 DLIIEFEVIFP 166
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 201 DLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVCDEC 260
DL V+LEE+Y+G C + ++ ++L P
Sbjct: 8 DLRVSLEEIYSG--------------------CTKKMKISHKRLNPD------------- 34
Query: 261 PNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGD 320
+NE+ L +E++ G K+G + F EG+ + P D++F ++ PH F+R G
Sbjct: 35 -GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 93
Query: 321 DLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKG 380
D+ ISL++AL G ++ LDGR I V + + PG R + EG+P + +G
Sbjct: 94 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 153
Query: 381 VLYITFDVEFP 391
L I F+V FP
Sbjct: 154 DLIIEFEVIFP 164
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 78.6 bits (192), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D Y++LGVPRNA +IK AY LAKK HPD N +D +A+ KF +L AYE+LSDE KR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 150 RYDQCG 155
+YD G
Sbjct: 68 QYDAYG 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YE+LGV + A+ +I+ AY+ LA K HPD+N D +A+AKF+E+ AYE+L+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 149 QRYDQCGMECVKKEG 163
YDQ G ++ G
Sbjct: 63 AAYDQYGHAAFEQGG 77
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YE+LGV + A+ +I+ AY+ LA K HPD+N D +A+AKF+E+ AYE+L+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 149 QRYDQCG 155
YDQ G
Sbjct: 63 AAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YE+LGV + A+ +I+ AY+ LA K HPD+N D +A+AKF+E+ AYE+L+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 149 QRYDQCG 155
YDQ G
Sbjct: 63 AAYDQYG 69
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 74.7 bits (182), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNP-NDDQAQAKFQELGAAYEILSDEKKR 148
D YEVL VPR A S IK AYR LA K HPDKNP N ++A+ +F+++ AYE+LSD KKR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 149 QRYDQCG 155
YD+ G
Sbjct: 70 DIYDRYG 76
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
KE Y+VLGV +A N++K AYR +A K HPDKNP+ +F+++ AYE+LSDEK
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEK 62
Query: 147 KRQRYDQCGME 157
KRQ YDQ G E
Sbjct: 63 KRQIYDQGGEE 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
KE Y+VLGV NA ++K AYR LA K HPDKNPN+ + KF+++ AYE+LSD K
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE---KFKQISQAYEVLSDAK 60
Query: 147 KRQRYDQCG 155
KR+ YD+ G
Sbjct: 61 KRELYDKGG 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQ-AQAKFQELGAAYEILSDEKKRQR 150
YE+L VPR+A ++ IK AYR A + HPDKNP++ + A+ KF+E+ AYE+LSD+ KR+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 151 YDQCGMECVKKEG 163
YD+ G E + G
Sbjct: 65 YDRYGREGLTGTG 77
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 82 RPKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEI 141
R ++ LY VLG+ +NA S+ IK +YR LA K HPDKNP++ +A KF+E+ A+ I
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 142 LSDEKKRQRYDQCG 155
L+D KR YD+ G
Sbjct: 70 LTDATKRNIYDKYG 83
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+++ Y +LGV + A S +I+ A++ LA K+HPDKNPN+ A F ++ AYE+L DE
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 148 RQRYDQCG 155
R++YD+ G
Sbjct: 80 RKKYDKYG 87
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 85 ASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNP-NDDQAQAKFQELGAAYEILS 143
+S + YEVLGV +A IK AYR LA + HPDKNP N ++A+ KF+ + AYE+LS
Sbjct: 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLS 64
Query: 144 DEKKRQRYDQCGME 157
D KKR YD+ G +
Sbjct: 65 DSKKRSLYDRAGCD 78
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
++ Y +LGV + A S +I+ A++ LA K+HPDKNPN+ A F ++ AYE+L DE R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 149 QRYDQCG 155
++YD+ G
Sbjct: 62 KKYDKYG 68
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQRY 151
Y++LGVP++A +IK A+ LA K HPDKN + D A+AKF+E+ AYE LSD +R+ Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKEY 68
Query: 152 DQCGMEC 158
D G
Sbjct: 69 DTLGHSA 75
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 267 NEEHHLEVEIEMGMKDGQQTKFTAEGE--PHIDGEPGDLIFHIRTLPHPRFERRGDDLYT 324
+E+ ++++++ G K G + + +G+ P G L F I+ HP F+R GDDL
Sbjct: 33 SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRDGDDLIY 91
Query: 325 NITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYI 384
+ +S +++L GF I +DGR + + R + P +GMP+ +N + +G L +
Sbjct: 92 TLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 385 TFDVEFP 391
+ V++P
Sbjct: 152 KYKVDYP 158
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 267 NEEHHLEVEIEMGMKDGQQTKFTAEGE--PHIDGEPGDLIFHIRTLPHPRFERRGDDLYT 324
+E+ ++++++ G K G + + +G+ P G L F I+ HP F+R GDDL
Sbjct: 33 SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRDGDDLIY 91
Query: 325 NITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYI 384
+ +S +++L GF I +DGR + + R + P +GMP+ +N + +G L +
Sbjct: 92 TLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 385 TFDVEFP 391
+ V++P
Sbjct: 152 KYKVDYP 158
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D YE+LGV R A +K AYR LA K HPDKN +A F+ +G AY +LS+ +KR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA-FKAIGTAYAVLSNPEKRK 66
Query: 150 RYDQCG 155
+YDQ G
Sbjct: 67 QYDQFG 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 65.1 bits (157), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D Y VLGV R A IK AY+ LA++ HPDKN D A+ +F ++ AYEILS+E+KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 150 RYDQCG 155
YD G
Sbjct: 77 NYDHYG 82
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 86 SKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDE 145
S+ +D Y ++GV D IK+AYR LA+K HPD + D A+A+F+E+ A+E+LSDE
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWEVLSDE 60
Query: 146 KKRQRYDQ 153
++R YDQ
Sbjct: 61 QRRAEYDQ 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
KE LY++LGV +A+ ++K YR A K HPDK D + KF+E+ A+EIL+D +
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQ 62
Query: 147 KRQRYDQCGMECVK 160
KR+ YDQ G+E +
Sbjct: 63 KREIYDQYGLEAAR 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y+ LG+ R A +IK AYR A + HPDKN + A+ KF+E+ AY++LSD +KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 149 QRYDQCGMECVKKEG 163
+ +D+ G E +K G
Sbjct: 62 EIFDRYGEEGLKGSG 76
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPN---DDQAQAKFQELGAAYE 140
K S++RD Y++LGV RNA +I AYR LA + HPD N +A+ KF ++ AA E
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
Query: 141 ILSDEKKRQRYD 152
+LSD + R+++D
Sbjct: 437 VLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPN---DDQAQAKFQELGAAYE 140
K S++RD Y++LGV RNA +I AYR LA + HPD N +A+ KF ++ AA E
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
Query: 141 ILSDEKKRQRYD 152
+LSD + R+++D
Sbjct: 437 VLSDPEMRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 91 LYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQR 150
LY++LGVP A +IK+AY HPD+N +A +F + AY +L R++
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 151 YDQ 153
YD+
Sbjct: 79 YDR 81
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D Y +LG + +I + ++ A + HPDK+P + +A FQ+L A EIL++E+ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 150 RYD 152
RYD
Sbjct: 81 RYD 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 92 YEVLGVPRNA-DSNKIKSAYRALAKKMHPDKNPNDDQ---AQAKFQELGAAYEILSDEKK 147
Y+VL V R D K+ AYRALA+K HPD+ N ++ A+ +F+ + AYE L D++
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 148 RQRYD 152
+ YD
Sbjct: 78 KTNYD 82
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGR--KITVERQKITWPGARIRKKNEGMPS 372
F+R GDDL I L A+ G +F ++ + G K+ + ++ PG R + +GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP- 60
Query: 373 YENNNAKGVLYITFDVEFPKNELSEEE 399
G L I F ++FP+N + EE
Sbjct: 61 IPKYGGYGNLIIKFTIKFPENHFTSEE 87
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND------DQAQAKFQELGAAYEI 141
++D Y +LG +A+ + +K Y+ L HPDK D ++ KF E+ A++I
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 142 LSDEKKRQRYD 152
L +E+ +++YD
Sbjct: 75 LGNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND------DQAQAKFQELGAAYEIL 142
+D Y +LG +A+ + +K Y+ L HPDK D ++ KF E+ A++IL
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 143 SDEKKRQRYD 152
+E+ ++ YD
Sbjct: 70 GNEETKREYD 79
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDK 121
+D +++LGV A +++ AYR LA +HPDK
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 295 HIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKIT--VE 352
H+D + G + + P E+ G DLYT + + + L+G+ +DI DG + V
Sbjct: 28 HLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATK--LSGYSWDISYGDGSSASGDVY 85
Query: 353 RQKITWPGARIRKK 366
R +T G K+
Sbjct: 86 RDTVTVGGVTTNKQ 99
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 86 SKERDLYEVLGVPRN--ADSNKIKSAYRALAKKMHPDKNPNDDQ-----AQAKFQELGAA 138
S + +E+ G+P D + + S +RAL K+ HPD + A + ++ A
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDA 60
Query: 139 YEILSDEKKRQRY 151
Y+ L D +R Y
Sbjct: 61 YQTLKDPLRRAEY 73
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 64 TDPPKVKRTHRGFNPYPPRPKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHP 119
TDP +R G+NP P PK+ + + E P A +NK K +++A + P
Sbjct: 731 TDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETA-ANKDKQELKSIADSLPP 785
>pdb|3RH2|A Chain A, Crystal Structure Of A Hypothetical Tetr-Like
Transcriptional Regulator (Sama_0099) From Shewanella
Amazonensis Sb2b At 2.42 A Resolution
Length = 212
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 266 KNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIR 308
K + ++ +E+ + G++T T H+D PG+L +H R
Sbjct: 3 KTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFR 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,480,775
Number of Sequences: 62578
Number of extensions: 460586
Number of successful extensions: 923
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 51
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)