RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1364
(401 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 253 bits (648), Expect = 4e-81
Identities = 125/344 (36%), Positives = 171/344 (49%), Gaps = 32/344 (9%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
+RD YE+LGV ++A +IK AYR LAKK HPD+NP D +A+ KF+E+ AYE+LSD +
Sbjct: 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61
Query: 147 KRQRYDQCGMECVKKEGMME-GMDPFSSFFGD-FGFHFGGE---NEREREVARGANIDID 201
KR YDQ G K G G F FGD F FGG R RGA++ +
Sbjct: 62 KRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYN 121
Query: 202 LYVTLEELYNGNFVE--VTRNKPV-------MKPALGTRKC-NCRQEMQTRQL-GPGRFQ 250
L +TLEE G E VTR+ KP + C C Q R + G F
Sbjct: 122 LEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFS 181
Query: 251 MMQ---------QTVCDECPNVR---FKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDG 298
Q + + D C + ++ + V I G+ DG + + + EGE +G
Sbjct: 182 FQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNG 241
Query: 299 -EPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKIT 357
GDL + PHP FER GDDLY + IS +A G + ++ LDGR + ++ T
Sbjct: 242 GPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGT 300
Query: 358 WPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
G R + +GMP + +G LY+ VE PKN LS+E+KE
Sbjct: 301 QTGEVFRLRGKGMPK-LRSGGRGDLYVRVKVETPKN-LSDEQKE 342
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 224 bits (574), Expect = 3e-70
Identities = 117/350 (33%), Positives = 161/350 (46%), Gaps = 43/350 (12%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D YE+LGV ++A +IK AYR LAKK HPD+N + + A+ KF+E+ AYE+LSD +KR
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE-AEEKFKEINEAYEVLSDPEKRA 59
Query: 150 RYDQCGMECVKKEG----------MMEGMDPFSSFFGDFGFHFGGENEREREVA-RGANI 198
+YDQ G G + F FGDF GG R R RG ++
Sbjct: 60 QYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDL 119
Query: 199 DIDLYVTLEELYNGNFVEVTRNKPV---------MKPALGTRKC-NCR---QEMQTRQLG 245
DL +T EE G E+ + KP + C C Q + +
Sbjct: 120 RYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTP 179
Query: 246 PGRFQMMQQTV-------------CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEG 292
G FQ QQT C C E + V+I G+ GQ+ + + +G
Sbjct: 180 FGFFQ-QQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238
Query: 293 EPHI-DGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITV 351
G GDL IR PH FER G+DLY + IS A+ G + ++ LDG + +
Sbjct: 239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKL 297
Query: 352 ERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+ T G R K +G+P N +G L +T VE PKN LS+E+KE
Sbjct: 298 KIPAGTQSGTVFRLKGKGVPR-LRGNGRGDLLVTVKVETPKN-LSKEQKE 345
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 217 bits (555), Expect = 3e-67
Identities = 127/357 (35%), Positives = 168/357 (47%), Gaps = 62/357 (17%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLGV RNA ++IK AYR LA K HPD+NP D +A+ KF+E+ AYE+LSD +K
Sbjct: 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQK 62
Query: 148 RQRYDQCGMECVKKEGMMEGM---DPFSSFFGD-FGFHFGGENERER-EVARGANIDIDL 202
R YDQ G ++ G G F FGD FG FGG R RGA++ ++
Sbjct: 63 RAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNM 122
Query: 203 YVTLEELYNGNFVEVTRNKPVM-----------KPALGTRKCN-CRQEMQTRQLGPGRFQ 250
+TLEE G V P + KP + C C G G+ +
Sbjct: 123 EITLEEAVRG--VTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCH--------GAGQVR 172
Query: 251 M------MQQT--VC--------DECPN------VRFKNEEHHLEVEIEMGMKDGQQTKF 288
M +QQT C D C V +E L V+I G+ G + +
Sbjct: 173 MQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVE---KEKTLSVKIPAGVDTGDRIRL 229
Query: 289 TAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGR 347
+ EGE G P GDL I HP FER G+DLY + IS A G + ++ LDGR
Sbjct: 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR 289
Query: 348 ---KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
KI Q G R + +G+ S + A+G LY VE P N L++ +KE
Sbjct: 290 VKLKIPEGTQ----TGKLFRLRGKGVKSV-RSGARGDLYCQVVVETPVN-LTKRQKE 340
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 187 bits (477), Expect = 1e-55
Identities = 122/362 (33%), Positives = 172/362 (47%), Gaps = 56/362 (15%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
++D YE+LGV RNA +IK AYR LAKK HPD NP D +A+ KF+E+ AYEILSD +K
Sbjct: 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63
Query: 148 RQRYDQCGMECVKKEGMMEG---MDPFSSFFGDFGF-------------HFGGENER-ER 190
R +YDQ G G +G F DF F FG R E
Sbjct: 64 RAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAET 123
Query: 191 EVARGANIDIDLYVTLEELYNGNFVEV-------------TRNKPVMKPALGTRKCNCRQ 237
+GA+I DL +T EE G E+ + KP KP C+
Sbjct: 124 GPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVT-CPVCHGTG 182
Query: 238 EMQTRQLGP-GRFQMMQ---------QTVCDECP------NVRFKNEEHHLEVEIEMGMK 281
+++TRQ P GR ++ + + D C +R ++V I G+
Sbjct: 183 QVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIR---RRRKIKVNIPAGID 239
Query: 282 DGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFD 340
DGQ EGEP I G P GDL I+ PHP F+R G ++Y + I+ DA G + +
Sbjct: 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIE 299
Query: 341 IDQLDGR-KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEE 399
I LDG+ K T+ T G + R + +G+P + +G + +E PK +L+E++
Sbjct: 300 IPTLDGKVKFTIPEG--TQTGTKFRLRGKGIP-HLRGRGRGDQIVKVYIEVPK-KLTEKQ 355
Query: 400 KE 401
KE
Sbjct: 356 KE 357
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 186 bits (475), Expect = 6e-55
Identities = 124/358 (34%), Positives = 177/358 (49%), Gaps = 51/358 (14%)
Query: 80 PPRPKASKERD---LYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELG 136
+ +E D LYEVL + ++ +++IK AYR LA K HPDK + KF+E+
Sbjct: 16 FDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEIS 71
Query: 137 AAYEILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGENEREREVARGA 196
AYE+LSD +KR+ YD+ G E + EG + D F D F G + ++ RG
Sbjct: 72 RAYEVLSDPEKRKIYDEYGEEGL--EGGEQPADASDLF--DLIFGGGRKPGGKK---RGE 124
Query: 197 NIDIDLYVTLEELYNGNFVEVTRNKPVM----------KPALGTRK-CNCRQ-EMQTRQL 244
+I L VTLE++YNG ++ NK V+ K A K CN + +Q RQ+
Sbjct: 125 DIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQM 184
Query: 245 GPGRFQMMQQTV------------------CDECPNVRFKNEEHHLEVEIEMGMKDGQQT 286
G M+ QT C C K LEV I+ G+ + +
Sbjct: 185 GS----MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKI 240
Query: 287 KFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDG 346
F E + + PG+++F + PH F+R G DL+ ISL +ALTGF F I LDG
Sbjct: 241 TFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDG 300
Query: 347 RKITVERQ--KITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNE-LSEEEKE 401
RK+ V ++ PG NEGMP+Y++ KG LY+TF+V FP + + EEKE
Sbjct: 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKE 358
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 180 bits (459), Expect = 4e-53
Identities = 124/354 (35%), Positives = 167/354 (47%), Gaps = 49/354 (13%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLGV RNAD +IK AYR LA+K HPD + ++ A+ KF+E+ AY +LSD++K
Sbjct: 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEK 62
Query: 148 RQRYDQ---CGMECVKKEGMMEGM---DPFSSFFGDFG-----FHFGGENEREREVARGA 196
RQRYDQ GM+ +E + + D F F G F FGG RGA
Sbjct: 63 RQRYDQFGHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGG--GSRHGPQRGA 120
Query: 197 NIDIDLYVTLEELYNG--NFVEVTRNK--PV-----MKPALGTRKC-NCRQEMQTRQLGP 246
+I ++ +TLEE +G ++V K PV +P + C C Q +Q+
Sbjct: 121 DIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRN 180
Query: 247 GRF-QMMQQTV--------------CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAE 291
QMM T C C E + V+I G++ G + + + E
Sbjct: 181 TILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGE 240
Query: 292 GEPHI-DGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGR--- 347
GE GEPGDL I+ PH F R G +LY IS A G D+ +DG
Sbjct: 241 GEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVEL 300
Query: 348 KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
KI Q G R K GMPS + KG LY+ V PK +LS ++KE
Sbjct: 301 KIPAGTQS----GTTFRLKGHGMPSL-RWSGKGNLYVKVKVVVPK-KLSPKQKE 348
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 172 bits (438), Expect = 5e-50
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 57/358 (15%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
++D YE+LGV RNA +IK AYR LA+K HPD N N +A+ KF+E+ AY++LSD +K
Sbjct: 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEK 60
Query: 148 RQRYDQCGMECVKKEGM-MEGMDPFSSFFG----------DFGFHFGGENERE------- 189
R+ YDQ G G +G + FS F G F FG R
Sbjct: 61 RKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERR 120
Query: 190 ---REVARGANIDIDLYVTLEELYNGNFVEVTRNKPVM---------KPALGTRKC-NCR 236
+ +G +I + ++LEE Y G V + + V P G + C C
Sbjct: 121 KTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCG 180
Query: 237 QEMQTRQLGPGRFQMMQ-----------QTVCDECPNVR---FKNEEHHLEVEIEMGMKD 282
+ Q G G F++ Q + C +C N R K E ++V I G+ +
Sbjct: 181 GSGEIYQRG-GFFRISQTCPTCGGEGVLREPCSKC-NGRGLVIKKET--IKVRIPPGVDN 236
Query: 283 GQQTKFTAEGEPH---IDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKF 339
G +K G+ H G PGDL ++ PHP FERRGD+LY ++ I++ +A+ G +
Sbjct: 237 G--SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294
Query: 340 DIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPK-NELS 396
++ LDG+K V+ T G +IR +GMP + + G L + ++ PK + LS
Sbjct: 295 EVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLK-GSGYGDLVVRVHIDVPKISMLS 351
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 169 bits (430), Expect = 7e-49
Identities = 112/355 (31%), Positives = 159/355 (44%), Gaps = 57/355 (16%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
RD Y +LGV RNA +IK AYR LA+++HPD NP D++AQ KF+E+ AYE+LSD +KR
Sbjct: 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKR 61
Query: 149 QRYDQCG--MECVKKEGMMEGMDPFSSFFGDFG-----FHFGGENER--EREVARGANID 199
+ D G +E G F FG G F GG R V G++
Sbjct: 62 RIVDLGGDPLESAGGGG-----GGFGGGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSL 116
Query: 200 IDLYVTLEELYNGNFVEVTRNKPVM------KPALGTRK------CNCRQEMQTRQ---L 244
+ + + LEE G +VT + V+ K G K C R E+QT Q L
Sbjct: 117 LRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFL 176
Query: 245 GPGRFQMMQQTVC-----------DECPN------VRFKNEEHHLEVEIEMGMKDGQQTK 287
G Q+M C D C VR + E + V+I G+ DG + +
Sbjct: 177 G----QVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARRE---ITVKIPAGVGDGMRIR 229
Query: 288 FTAEGE-PHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDG 346
A+GE G GDL + PH F R GDDL+ +++ + DA G ++ +
Sbjct: 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILD 289
Query: 347 RKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+ T PG+ I + GMP + +G L+ +V P L E+ E
Sbjct: 290 GPSEITIPPGTQPGSVITLRGRGMPHLR-SGGRGDLHAHVEVVVP-TRLDHEDIE 342
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 168 bits (427), Expect = 1e-48
Identities = 108/345 (31%), Positives = 156/345 (45%), Gaps = 32/345 (9%)
Query: 86 SKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDE 145
+RD YE+LGV R+A +IK +YR LA K HPD+NP D +A+ F+E AYE+LSD
Sbjct: 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60
Query: 146 KKRQRYDQCGMECVKKEGMMEGM---DPFSSF---FGD-FGFHFGGENEREREVARGANI 198
KKR YDQ G E + G D FSSF F D FGF G V GA++
Sbjct: 61 KKRGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADL 120
Query: 199 DIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQ---- 254
DL + E G E+ K C T G Q+ Q
Sbjct: 121 RYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF 180
Query: 255 TVCDECPNVRFKNE-----------------EHHLEVEIEMGMKDGQQTKFTAEGEPHI- 296
++ CP R + ++V+I G+ G + + EGE +
Sbjct: 181 SIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVR 240
Query: 297 DGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKI 356
G PGDL + PH FER G+D++ + IS A G + ++ L+G + ++ K
Sbjct: 241 GGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGER-ELKIPKG 299
Query: 357 TWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
T PG R K +G+PS +G I +V+ P L+++++E
Sbjct: 300 TQPGDIFRFKGKGIPSLRGGG-RGDQIIEVEVKVPTR-LTKKQEE 342
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 166 bits (421), Expect = 1e-47
Identities = 116/347 (33%), Positives = 166/347 (47%), Gaps = 40/347 (11%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLGV R+A ++IK AYR LA + HPD+NP++ +A+ KF+E AYE+L D +K
Sbjct: 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEK 62
Query: 148 RQRYDQCGMECVKKEGMMEGM----DPFSSF---FGD-FGFHFGGENEREREVARGANID 199
R RYD+ G V G G D FS F FGD FGF GG R A G+++
Sbjct: 63 RARYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQA-GSDLR 121
Query: 200 IDLYVTLEELYNGNFVEVTRNKPVMKP---------ALGTRKCNCRQ---EMQTRQLGPG 247
+L V+ + G+ EVT P A GT CR Q RQ G
Sbjct: 122 YNLTVSFRQAAKGD--EVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQ-SQG 178
Query: 248 RFQMMQ---------QTVCDECPNVRFK---NEEHHLEVEIEMGMKDGQQTKFTAEGEPH 295
FQ+ + + CP + + L+V I G+ G + + EGEP
Sbjct: 179 FFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238
Query: 296 IDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQ 354
+ G P GDL I F+R+G DL IS A G + ++ LD +T++
Sbjct: 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD-PVTLDIP 297
Query: 355 KITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
K T G R + +G+P Y ++ KG L + V P +L++ ++E
Sbjct: 298 KGTQSGEVFRLRGKGLP-YLGSSQKGDLLVEVSVVTP-TKLTKRQEE 342
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 166 bits (421), Expect = 2e-47
Identities = 125/372 (33%), Positives = 175/372 (47%), Gaps = 67/372 (18%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLGV R+AD ++IK AYR LA K HPDKNP++ +A+ F+E+ AYE+LS++ K
Sbjct: 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61
Query: 148 RQRYDQCGMECVKKEGMMEG-----------MDPFSSF---FG---------DFGFH--F 182
R+RYDQ G V G D FS+F FG FGF F
Sbjct: 62 RRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVF 121
Query: 183 GGENEREREVA--RGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCN------ 234
GG R R A G ++ I L +TLEE+ G VE T +K + ++CN
Sbjct: 122 GGGGRRRRASAGIPGTDLKIRLKLTLEEIAKG--VEKTLK---IKKQVPCKECNGTGSKT 176
Query: 235 --------CRQEMQTRQLGPGRF-QMMQQTVC-----------DECPNVR---FKNEEHH 271
C + RQ F Q + T C D CP K E
Sbjct: 177 GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVT 236
Query: 272 LEVEIEMGMKDGQQTKFTAEGEPHI-DGEPGDLIFHIRTLPHPRFERRGDDLYTNITISL 330
++V + G++DG +G G PGDLI I PH F R GDD+ N+ +S
Sbjct: 237 VKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSY 296
Query: 331 QDALTGFKFDIDQLDGR-KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVE 389
D + G K ++ LDG K+T+ T P +R +G+ + + +G Y+ +V
Sbjct: 297 PDLVLGTKVEVPTLDGAVKLTIPAG--TQPETMLRIPGKGI-GHLRGSGRGDQYVRVNVF 353
Query: 390 FPKNELSEEEKE 401
PK E+S ++KE
Sbjct: 354 VPK-EVSHQDKE 364
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 164 bits (416), Expect = 7e-47
Identities = 110/358 (30%), Positives = 162/358 (45%), Gaps = 49/358 (13%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNP-NDDQAQAKFQELGAAYEILSDEK 146
++D YE+LGV RNA +IK AY+ L K+ HPD++P N +A+ KF+E+ AYE+LSD +
Sbjct: 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62
Query: 147 KRQRYDQCGM--ECVKKEGMMEGMDPFSSFFGDFGFHFG-----------GENEREREVA 193
KR YD+ G E + G F F DF F E +RE A
Sbjct: 63 KRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYA 122
Query: 194 R-GANIDIDLYVTLEELYNGNFVEVTRNK---------PVMKPALGTRKC-NC------R 236
R G +I ++ VTL +L NG + V ++ ++P G C C R
Sbjct: 123 RRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR 182
Query: 237 QEMQT------------RQLGPGRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQ 284
+E ++ R G G+ + C EC V+I G++DG
Sbjct: 183 EERRSFFGVFVSERTCERCGGTGK---IPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGT 239
Query: 285 QTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQ 343
+ T G G P GDL +R P PRF+R G DL ++TI A+ G ++
Sbjct: 240 VLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPL 299
Query: 344 LDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+G ++ T P R K +G+P+ +G L + VE PK LS EE++
Sbjct: 300 PEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGR-RGDLIVNVHVEIPKR-LSREERK 355
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 150 bits (381), Expect = 3e-44
Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 43/199 (21%)
Query: 196 ANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQT 255
A++ DL +TLEE Y G E+ +
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEIKIPR---------------------------------- 26
Query: 256 VCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHI-DGEPGDLIFHIRTLPHPR 314
V E+ L V+I G+ DGQ+ + EG+ G PGDL IR PHP
Sbjct: 27 ------KVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPV 80
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYE 374
F R G+DLY + ISL +AL G + ++ G K+ ++ T PG +R K +GMP
Sbjct: 81 FRRDGNDLYCEVPISLTEALLGGEIEV-PTLGGKVKLKIPPGTQPGTVLRLKGKGMPRL- 138
Query: 375 NNNAKGVLYITFDVEFPKN 393
+G LY+ VEFPK
Sbjct: 139 RGGGRGDLYVEVKVEFPKK 157
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 155 bits (394), Expect = 1e-43
Identities = 113/356 (31%), Positives = 167/356 (46%), Gaps = 52/356 (14%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YEVLG+ + A ++IK A+R LA K HPDKN + +A+ KF+E+ AY++LSD +K+
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63
Query: 149 QRYDQCGMECVKKEG-------------MMEGM-DPFSSFFGDFGFHFGGENEREREVAR 194
+YDQ G G M G D F SFFG FG + R R
Sbjct: 64 AQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGG---GFGSSSRRRNGPQR 120
Query: 195 GANIDIDLYVTLEELYNG--NFVEVTRNKPV-------MKPALGTR---KCNCRQEMQTR 242
GA+I+ + +T EE G + VTRN+ KP + KC +++ +
Sbjct: 121 GADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQ 180
Query: 243 QLGP-GRFQMMQQTVCDE-----------CPNVRFKN---EEHHLEVEIEMGMKDGQQTK 287
+ P G F T CD+ C K + ++V + G+ G
Sbjct: 181 RNTPLGSFVST--TTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIP 238
Query: 288 FTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDG 346
+GE +G P GDL +IR PH F+R+G D+Y + IS A G + + +DG
Sbjct: 239 LRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDG 298
Query: 347 R-KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
K V T PG R K +G+P N+ +G Y+T V+ PK L+ ++KE
Sbjct: 299 EVKYEVPAG--TQPGTVFRLKGKGVP-RVNSTGRGNQYVTVIVDIPKK-LNSKQKE 350
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 155 bits (393), Expect = 2e-43
Identities = 115/361 (31%), Positives = 168/361 (46%), Gaps = 49/361 (13%)
Query: 85 ASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSD 144
+++RD YEVLGV + A ++IK AYR A + HPDKNP D +A+ KF+E AY++LSD
Sbjct: 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60
Query: 145 EKKRQRYDQCGMECV---------KKEGM-MEGM-----DPFSSFFGDFG--FHFGGENE 187
KR RYDQ G V EGM ME + D F G FG FGG
Sbjct: 61 PDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGS 120
Query: 188 REREVARGANIDIDLYVTLEELYNGNFVEVTRNKPV---------MKPALGTRKCN-CRQ 237
++R V RG+++ + + + L+E+ G + K V + G+ C C+
Sbjct: 121 QQR-VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKG 179
Query: 238 E-MQTRQLGPGRFQMMQQTVCDEC---------PNVRFKNE-----EHHLEVEIEMGMKD 282
TR M Q+ C C + E E + V+I G+ +
Sbjct: 180 SGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAE 239
Query: 283 GQQTKFTAEGE-PHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDI 341
G Q +G G GDL+ I PHP R +DL N+ +S+ A G ++
Sbjct: 240 GMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEV 299
Query: 342 DQLDGR-KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEK 400
+DG+ K+ +E T PG +R +N+G+PS N G L + V P+ LS+EEK
Sbjct: 300 PTIDGKAKVKIEAG--TQPGKVLRLRNKGLPSV-NGYGTGDLLVNVSVYIPET-LSKEEK 355
Query: 401 E 401
+
Sbjct: 356 Q 356
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 154 bits (390), Expect = 5e-43
Identities = 106/358 (29%), Positives = 154/358 (43%), Gaps = 56/358 (15%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+ Y+ LGV ++A ++IK AYR L+KK HPD N + A+ K++E+ AYE LSD +K
Sbjct: 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQK 61
Query: 148 RQRYDQCGMECVK-----KEGMMEGMDPFSSF--FGD-FGFHFGGENEREREVA--RGAN 197
R YDQ G G G D F F D F FGG R A +G +
Sbjct: 62 RAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDD 121
Query: 198 IDIDLYVTLEELYNGNFVEVTRNKPVM---------KPALGT-----RKCNCRQEMQ-TR 242
+ + + EE G EV+ N+ KP GT KC+ +
Sbjct: 122 LQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKP--GTSPVTCGKCHGSGVITVDT 179
Query: 243 QLGPGRFQMMQQTVCDECPNVRFK---------------NEEHHLEVEIEMGMKDGQQTK 287
Q G M +Q CD C + K + H + V+I G++ GQQ +
Sbjct: 180 QTPLGM--MRRQVTCDVC-HGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIR 236
Query: 288 FTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDG 346
+GE +G P GDL R P +FER G +Y + IS A G ++ + G
Sbjct: 237 LQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHG 296
Query: 347 RKITVERQKI---TWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
VE KI T G + R + +G P G ++T ++ P L++ +KE
Sbjct: 297 ---DVE-LKIPAGTQTGKKFRLRGKGAPKL-RGGGNGDQHVTVNIVTPTK-LNDAQKE 348
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 152 bits (386), Expect = 2e-42
Identities = 109/368 (29%), Positives = 159/368 (43%), Gaps = 67/368 (18%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D Y +LGV + A +IK AYR LA K HPDKNP D +A+ +F+E+ AYE+LSD +KR+
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 150 RYDQCGMECVKK-------EGMMEGMDPFSSFFGDFGFHFGGEN---------------- 186
YD+ G + GM D +F G FG FGG
Sbjct: 62 SYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM 121
Query: 187 -EREREVARGANIDIDLYVTLEELYNGNFVE-VTRNKPVMKPALGTRKCNCR-------- 236
+GA+ + + ++ EE G E + G+ + +
Sbjct: 122 RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRC 181
Query: 237 ----QEMQTRQLGPGRFQMMQ---------QTVCDECPNVRFK---NEEHHLEVEIEMGM 280
Q +Q+R G F M + + D C R + ++ + V I G+
Sbjct: 182 KGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGV 237
Query: 281 KDGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKF 339
G + K G+ +G P GDL I PHP FERRGDDL + I DA G K
Sbjct: 238 DSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKK 297
Query: 340 DIDQLDGRKITVERQ-KITWP-----GARIRKKNEGMPSYENNNAKGVLYITFDVEFPKN 393
+I L E ++T P G ++ + +G P+ + +G L + VE P+N
Sbjct: 298 EIPTL-----LKEGTCRLTIPEGIQSGTILKVRGQGFPNV-HGKGRGDLLVRISVETPQN 351
Query: 394 ELSEEEKE 401
LSEE+KE
Sbjct: 352 -LSEEQKE 358
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 151 bits (384), Expect = 3e-42
Identities = 114/353 (32%), Positives = 171/353 (48%), Gaps = 51/353 (14%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
RD YEVLGV ++A ++IK AYR L+KK HPD N + + KF+E+ AYE+LSD++KR
Sbjct: 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADE-KFKEISEAYEVLSDDQKR 62
Query: 149 QRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFH------FGGENEREREVA--RGANIDI 200
+YDQ G +G G F G FGF FGG R A +GA++
Sbjct: 63 AQYDQFGHAG-PNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQY 121
Query: 201 DLYVTLEELYNGNFVEVTRNKPV---------MKPALGTRK-----CNCRQEMQTRQLGP 246
+ +T EE G E+ K KP GT K C ++ Q P
Sbjct: 122 TMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKP--GTSKETCSHCGGSGQVSVEQNTP 179
Query: 247 -GRFQMMQQTVC-----------DECPNVRFK---NEEHHLEVEIEMGMKDGQQTKFTAE 291
GR ++ + C ++CP K + + V+I G+ +GQQ + + E
Sbjct: 180 FGR--VVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGE 237
Query: 292 GEPHIDGEP-GDL--IFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRK 348
GEP ++G P GDL +F +R PH FER GDD+Y + ++ A G + ++ L G K
Sbjct: 238 GEPGVNGGPAGDLYVVFRVR--PHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHG-K 294
Query: 349 ITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+ ++ T G + R K +G+P+ +G Y+ V P L++ +KE
Sbjct: 295 VKLKIPAGTQTGTQFRLKGKGVPNV-RGYGQGDQYVVVRVVTPTK-LTDRQKE 345
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 148 bits (376), Expect = 4e-41
Identities = 105/349 (30%), Positives = 152/349 (43%), Gaps = 48/349 (13%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D YE+LGV R A +++IKSAYR LA K HPD+N + A KF ++ AY +LSD +KR
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRA 61
Query: 150 RYDQCGMECVKKEGMMEG----------MDPFSSFFGDFGFHFGGENEREREVARGANID 199
YD+ G GM G MD F FG GF G R ARG +++
Sbjct: 62 HYDRFG--TAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGGGRGR---RGPARGDDLE 116
Query: 200 IDLYVTLEELYNGNFVEVT-------------RNKPVMKPALGTRKCN----CRQEMQ-- 240
+ +TLE+ G VEV R +P KP C R + +
Sbjct: 117 TEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTI 176
Query: 241 -----TRQLGP---GRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEG 292
T+Q P G Q++ C C + ++V++ G+ +G + + G
Sbjct: 177 FGVVETQQPCPTCRGEGQII-TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMG 235
Query: 293 EPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVE 352
G GDL HI PHP R + L I A G + + LDG + +E
Sbjct: 236 NEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIE 293
Query: 353 RQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+ T G R + +GMP + G L + +++ PK +LS E +E
Sbjct: 294 VKPGTQHGDLHRLRGQGMPRLQGAGT-GDLIVEYEIAVPK-QLSPEARE 340
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 147 bits (373), Expect = 1e-40
Identities = 109/351 (31%), Positives = 157/351 (44%), Gaps = 44/351 (12%)
Query: 86 SKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDE 145
+ RD YE+LG+ ++A IK AYR LA K HPDKN D A+ KF+E+ AY +LSD
Sbjct: 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAYAVLSDA 60
Query: 146 KKRQRYDQCGMECVKKEGMMEGMDPF-SSFFGDFG-----FHFGGENEREREVARGANID 199
+KR +YD+ G + + E D F + FG FG F GG RG+++
Sbjct: 61 EKRAQYDRFGHAGIDNQYSAE--DIFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLR 118
Query: 200 IDLYVTLEELYNGNFVEV---------TRNKPVMKPALGTRKC-NCR---QEMQTRQLGP 246
DLY+TLEE G ++ T + KP ++C C Q TR
Sbjct: 119 YDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPL 178
Query: 247 GRFQMMQQTVCDECPNV---------------RFKNEEHHLEVEIEMGMKDGQQTKFTAE 291
G+F + T C C + + + V + G G + K + E
Sbjct: 179 GQF--VTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTR-KITVNVPAGADSGLRLKLSGE 235
Query: 292 GEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKIT 350
GE G P GDL + H FER GDD+ + I IS A G + L G K+
Sbjct: 236 GEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYG-KVK 294
Query: 351 VERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+ T + R K++GMP + + KG + V+ P L++E+KE
Sbjct: 295 MNIPPGTQTHSVFRLKDKGMPRL-HGHGKGDQLVKVIVKTPTK-LTQEQKE 343
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 147 bits (374), Expect = 1e-40
Identities = 106/347 (30%), Positives = 153/347 (44%), Gaps = 37/347 (10%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
D YE+LGV R+AD +++K AYR LA+K HPD N + A+ +F+E+ AYE+LSD + R
Sbjct: 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETR 61
Query: 149 QRYDQCGMECVKKEGMMEGM-------DPFSSFFGDF-GFHFGGENEREREVARGANIDI 200
RYDQ G V M D F +FF F G G R R RG ++
Sbjct: 62 ARYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRY 121
Query: 201 DLYVTLEELYNGNFVEV---------TRNKPVMKPALGTRKC-NCRQEMQTRQLGPGRFQ 250
DL + E G E+ T KP G C C Q R+ F
Sbjct: 122 DLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFG 181
Query: 251 MMQQTV---------------CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPH 295
Q CD C K L++ I G+ G + + + EG+
Sbjct: 182 SFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAG 241
Query: 296 IDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQ 354
+ G P GDL ++ P F R G ++ + I IS A+ G ++D +DG + +
Sbjct: 242 LRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDG-PVELTIP 300
Query: 355 KITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
T P + +N+G+P N A+G IT V+ P +S+EE+E
Sbjct: 301 AGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIP-TRISDEERE 346
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 143 bits (361), Expect = 4e-39
Identities = 113/352 (32%), Positives = 170/352 (48%), Gaps = 43/352 (12%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
ER Y++LGV ++A+ +IKSAYR LA K HPDKN + +++ KF+E AYEIL D KK
Sbjct: 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKK 62
Query: 148 RQRYDQCGMECVK--KEGMMEGM-DPFSSFFGDFG-----FHFGGENE-----REREVAR 194
RQ YDQ G V G +G FS FGDFG F GG R R
Sbjct: 63 RQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQR 122
Query: 195 GANIDIDLYVTLEELYNGN--FVEVTRNKPVM--------KPALGTRKCNCRQEMQTRQL 244
G+++ +L V+LE+ G +E+ R + + K + T +C Q R+
Sbjct: 123 GSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT 182
Query: 245 GPGRFQMMQ------------QTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEG 292
G F + C C + + + ++I G++ G + K + EG
Sbjct: 183 -QGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEG 241
Query: 293 EPHIDGEP-GDL--IFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKI 349
E +G P GDL + HI+ H FER+G+DL ISL A+ G + ++ +DG+K
Sbjct: 242 EAGPNGGPHGDLYVVTHIKK--HELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKA 299
Query: 350 TVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
++ + T G R K GMP Y KG ++ +E PK +++ ++E
Sbjct: 300 KMKIPEGTESGQVFRLKGHGMP-YLGAYGKGDQHVIVKIEIPK-KITRRQRE 349
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 142 bits (359), Expect = 8e-39
Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 37/340 (10%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YE+LG+ + A ++IK AYR +A K HPDKN + +A++ F+E AYE+L D+ K
Sbjct: 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61
Query: 148 RQRYDQCGMECVKK----EGMMEGMDPFSSFFGDFG-----FHFGGE-NEREREVARGAN 197
R +YD+ G + EG G FS F DFG F G ++ R+ +G +
Sbjct: 62 RAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQD 121
Query: 198 IDIDLYVTLEELYNG--NFVEVTRNKPVMKPALGTRK--------CN-CRQEMQTRQLGP 246
+ + ++LE+ Y G N + +TRN + + LG + CN C + Q G
Sbjct: 122 LTYQIEISLEDAYLGYKNNINITRNM-LCESCLGKKSEKGTSPSICNMCNGSGRVMQ-GG 179
Query: 247 GRFQMMQ------------QTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEP 294
G F++ C C ++ +E++I G+ D QQ K +G
Sbjct: 180 GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSV 239
Query: 295 HIDG-EPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVER 353
+ D + GDL I PH F+R G DLY + IS A G + I + +KI ++
Sbjct: 240 NPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKI 299
Query: 354 QKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKN 393
K T +I KNEGMP ++ I ++ PKN
Sbjct: 300 PKGTENDEQIIIKNEGMPILHTEKFGNLILII-KIKTPKN 338
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 135 bits (341), Expect = 4e-36
Identities = 108/368 (29%), Positives = 156/368 (42%), Gaps = 69/368 (18%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
K++D YEVLGV + A +I+ AYR LAK+ HPD N + D A K E+ A ++L D+
Sbjct: 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVLLDKD 60
Query: 147 KRQRYDQCGMECVKKEGMMEGMDPFSSFFGDF----------GFH---------FGGENE 187
KR++YDQ G +G FSS FGDF GF FG
Sbjct: 61 KRKQYDQFG------HAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS 114
Query: 188 REREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKC-------------- 233
+ +G ++ +D+Y+T +EL G + KC
Sbjct: 115 DYQRSTKGQSVSLDIYLTFKELLFG-----VDKIIELDLLTNCSKCFGSGAESNSDIHIC 169
Query: 234 -NCR---QEMQTRQLGPGRFQMMQQTVCDECPNV--RFKN------------EEHHLEVE 275
NC + + + +G FQ Q C+ C KN E +EV
Sbjct: 170 NNCHGTGEVLVQKNMGF--FQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVN 227
Query: 276 IEMGMKDGQQTKFTAEGEPHID-GEPGDLIFHIRTLPHPRFER-RGDDLYTNITISLQDA 333
I G++ QQ K + +G ++ G GDLI I FE +D+ IS DA
Sbjct: 228 IPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDA 287
Query: 334 LTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKN 393
+ G + I LDG I + K I N+G+ N + +G L I ++ PKN
Sbjct: 288 ILGNEIIIKTLDG-DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKN 346
Query: 394 ELSEEEKE 401
LS++EKE
Sbjct: 347 -LSKKEKE 353
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 133 bits (337), Expect = 2e-35
Identities = 104/362 (28%), Positives = 161/362 (44%), Gaps = 53/362 (14%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
E+D Y+VLGVP++A +IK AYR LA++ HPD N D +A+ +F+E+ AY++LSDEKK
Sbjct: 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67
Query: 148 RQRYDQC----GMECVKKEGMMEGMDPFSSFFGD---------------------FGFHF 182
R+ YD+ G + G F+ GD FG F
Sbjct: 68 RKEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127
Query: 183 GGENEREREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPAL-------GT--RKC 233
R + RGA+++ ++ ++ E +G V + PA GT R C
Sbjct: 128 NRGGRRTQP-RRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVC 186
Query: 234 -NCRQEMQ-TRQLG-----------PGRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGM 280
C Q +R G GR ++ C C ++V I G+
Sbjct: 187 PTCSGTGQVSRNSGGFSLSEPCPDCKGR-GLIADDPCLVCKGSGRAKSSRTMQVRIPAGV 245
Query: 281 KDGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKF 339
DGQ+ + +G P G P GDL + PHP F R GD+L + ++ +A G +
Sbjct: 246 SDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEV 305
Query: 340 DIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEE 399
+ L G +TV+ T G +R + +G + +G L +T +V PK+ LS +
Sbjct: 306 RVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAV--RKDGTRGDLLVTVEVAVPKD-LSGKA 362
Query: 400 KE 401
+E
Sbjct: 363 RE 364
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 131 bits (332), Expect = 7e-35
Identities = 112/356 (31%), Positives = 166/356 (46%), Gaps = 53/356 (14%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNP-NDDQAQAKFQELGAAYEILSDEKK 147
+D Y++LGV RNA IK A+R LAKK HPD +P N +A+ KF+E+ AYE+LSD +K
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62
Query: 148 RQRYDQCGMECVKKEGMMEGMDPFSS-----------FFGDFGF-HFGGENEREREVARG 195
R++YDQ G G D F+ F G+FG F G ++
Sbjct: 63 RRQYDQTGTVDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQST---- 118
Query: 196 ANIDIDLY----VTLEELYNGNFVEVTRNKPVMKPAL-GTRKCN--------CRQEMQTR 242
NID+D+Y ++LE+ Y G + + M P GT N C Q R
Sbjct: 119 RNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQR 178
Query: 243 QL-GPGRFQMMQQTVCDEC------PNVR----------FKNEEHHLEVEIEMGMKDGQQ 285
+ G G F+M+ T C C P + NE+ + V+I G D +
Sbjct: 179 IVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNED--ISVKIPKGATDNLR 236
Query: 286 TKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLD 345
+ +G+ + G GDL +R P +R DDLY + I+ A G + +I +L
Sbjct: 237 LRVKGKGQSY-GGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEI-KLF 294
Query: 346 GRKITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
K ++ + T PG ++ K GMP N + G L + +VE PK L+ ++KE
Sbjct: 295 REKYNLKIPEGTQPGEVLKIKGAGMPHL-NGHGSGDLLVRINVEVPKR-LTSKQKE 348
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 126 bits (317), Expect = 1e-32
Identities = 107/345 (31%), Positives = 162/345 (46%), Gaps = 38/345 (11%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLGV RNA +++K AYR LA+K HPD N D A+ KF+E+ AY+ LSD +K
Sbjct: 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPD-AEDKFKEVKEAYDTLSDPQK 61
Query: 148 RQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGENEREREVARGANIDIDLYVTLE 207
+ YDQ G + G F F F FGG R A D+ +TLE
Sbjct: 62 KAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLE 121
Query: 208 --ELYNG--NFVEVTRN-----------KPVMKPAL-----GTRKCNCRQ-----EMQTR 242
E G +E+ R KP KP G+ + N Q + R
Sbjct: 122 FKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNR 181
Query: 243 QL-----GPGRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHID 297
++ G G+ + C VR + + + V++ G+ GQQ + + +GE ++
Sbjct: 182 RVCHHCEGTGKIIKQKCATCGGKGKVRKRKK---INVKVPAGIDHGQQLRVSGQGEAGVN 238
Query: 298 GEP-GDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKI 356
G P GDL PH FER GDD+Y + ++ G + ++ L+G K+ ++
Sbjct: 239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNG-KVKLKIPAG 297
Query: 357 TWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
T G R + +G+P+ + +G ++ V PKN L+E+EKE
Sbjct: 298 TQTGTSFRLRGKGVPNV-HGRGQGDQHVQVRVVTPKN-LTEKEKE 340
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 125 bits (315), Expect = 2e-32
Identities = 96/345 (27%), Positives = 166/345 (48%), Gaps = 35/345 (10%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y++LGV + A +K AY LAK+ HPD + A+ KF+E+ AAY++L DE+KR
Sbjct: 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKR 61
Query: 149 QRYDQCGMECVKKEGMMEGMDPFSSF-------FGDFGFHFGGENEREREV---ARGANI 198
YD+ G + + + G F FGDF F G + R R RG+++
Sbjct: 62 AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDL 121
Query: 199 DIDLYVTLEELYNGNFVEVTRNKPVMKPAL---GTRK------CNCRQEMQTRQLGPGRF 249
+L + LEE ++G ++ + V G+ K C+ + ++ G F
Sbjct: 122 KYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFF 181
Query: 250 QMMQ------------QTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHI- 296
+ Q + C +C + +++ +L V I G+++G + + T EGE I
Sbjct: 182 TIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241
Query: 297 DGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKI 356
G GDL I PH ++ G +L+ + IS +A G + ++ ++G K+ +
Sbjct: 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG 301
Query: 357 TWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
T G ++R +++GM S + +G + VE PKN LS+ ++E
Sbjct: 302 TQNGDQLRLRSKGM-SKMRSTIRGDMLTHIHVEVPKN-LSKRQRE 344
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 120 bits (302), Expect = 4e-31
Identities = 93/317 (29%), Positives = 139/317 (43%), Gaps = 58/317 (18%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y ++GV D IK+AYR LA+K HPD + D A+A+F+E+ A+E+LSDE++R
Sbjct: 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWEVLSDEQRR 62
Query: 149 QRYDQC---------GMECVKKEGMMEGM----DPFSSFFGDFGFHFGGENEREREVARG 195
YDQ + +G D FSS FG R+R ARG
Sbjct: 63 AEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHARQ-----SRQRPAARG 117
Query: 196 ANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQT 255
+I+I++ V LEE + ++ N PV F M++Q
Sbjct: 118 HDIEIEVAVFLEETLTEHKRTISYNLPVYNA----------------------FGMIEQ- 154
Query: 256 VCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPR 314
E P L V+I G+ +GQ+ + +G P +G P GDL I PHP
Sbjct: 155 ---EIPKT--------LNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPL 203
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYE 374
F+ G DL + ++ +A G K + L I + + G R+R K +G+ S +
Sbjct: 204 FDIVGQDLEIVVPLAPWEAALGAKVTVPTLKE-SILLTIPPGSQAGQRLRVKGKGLVSKK 262
Query: 375 NNNAKGVLYITFDVEFP 391
G LY + P
Sbjct: 263 QT---GDLYAVLKIVMP 276
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 116 bits (293), Expect = 5e-30
Identities = 93/336 (27%), Positives = 138/336 (41%), Gaps = 85/336 (25%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y +LGVP+NA ++IK A++ LA+K HPD N A+ KF+E+ AY +LSD +KR
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKR 62
Query: 149 QRYDQCGMECVKKE-----------GMMEGMD--PFSSFF----------GDFGFHFGGE 185
+ YD G G G + FS FF G FG FG
Sbjct: 63 RIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSV 122
Query: 186 NEREREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLG 245
R R +G +++ +L +TLEE Y G V + + + R
Sbjct: 123 GRRAR---KGRDLEAELPLTLEEAYRGGEKVVE---------VAGERLSVR--------- 161
Query: 246 PGRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIF 305
I G+++GQ + +G + GDL
Sbjct: 162 ------------------------------IPPGVREGQVIRLAGKG-----RQGGDLYL 186
Query: 306 HIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGR-KITVERQKITWPGARIR 364
+R LPHP F GDDLY + + A+ G K + LDG ++T+ + T G ++R
Sbjct: 187 VVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPR--TQAGRKLR 244
Query: 365 KKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEEK 400
K +G P +G Y + P EEE+
Sbjct: 245 LKGKGWPRGP--AGRGDQYAEVRITIPTRPTPEEER 278
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 106 bits (266), Expect = 1e-28
Identities = 38/63 (60%), Positives = 46/63 (73%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQ 149
D YE+LGVPR+A +IK AYR LA K HPDKNP D A+ KF+E+ AYE+LSD +KR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 150 RYD 152
YD
Sbjct: 61 IYD 63
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 97.6 bits (244), Expect = 3e-25
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 321 DLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENNNAKG 380
DLY + ISL++AL G ++ LDGRK+ ++ T PG ++R K +GMP + N +G
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60
Query: 381 VLYITFDVEFPKNELSEEEKE 401
L +T +V+ PK LS E+KE
Sbjct: 61 DLIVTLNVKIPKK-LSSEQKE 80
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 90.0 bits (224), Expect = 1e-22
Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDD-QAQAKFQELGAAYEILSDEKK 147
D YE+LGVPR+A ++IK AYR LA K HPDKNP D +A+ KF+E+ AYE+LSD +K
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 89.1 bits (222), Expect = 2e-22
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSD 144
D Y++LGVP +A +IK AYR LA K HPDKNP+D +A+ KF+E+ AYE+LSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 96.3 bits (239), Expect = 4e-22
Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 35/341 (10%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
E YE+L V ++++ IK +YR LA K HPD+N D +A+ KF+ + AY +LSDEKK
Sbjct: 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK 61
Query: 148 RQRYDQCGMECVKKEGMMEGMDPFSSFFGDFG------FHFGGENEREREVARGANIDID 201
R YD+ G + + + G + FS FF D G F FG + ++ + +
Sbjct: 62 RALYDRYGKKGLNQAGASQ--SDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQT 119
Query: 202 LYVTLEELYNG----------NFVEVTRNKPVMKPALGT-RKCNCRQEMQTRQ------- 243
+ ++ +E G + E AL T ++CN + ++ RQ
Sbjct: 120 IELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQ 179
Query: 244 -----LGPGRFQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDG 298
G G+ + +T C C + ++ ++ I G+ D + +G + G
Sbjct: 180 TCGACQGKGK---IIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKG 236
Query: 299 EPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITW 358
+ GDL R F+R G DL+ + G + L G ++ ++ +
Sbjct: 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNAR 296
Query: 359 PGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELSEEE 399
+NEG+ E ++ +G L + V +PK+ E++
Sbjct: 297 DRQTFAFRNEGVKHPE-SSYRGSLIVELQVIYPKSLNKEQQ 336
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 89.1 bits (220), Expect = 2e-20
Identities = 59/257 (22%), Positives = 91/257 (35%), Gaps = 44/257 (17%)
Query: 85 ASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-DQAQAKFQELGAAYEILS 143
S D YE+LGVP NA +IK AYR LA K HPD+NP D A+ KF+E+ AYEILS
Sbjct: 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61
Query: 144 DEKKRQRYDQ-------CGMECVKKEG-MMEGMDPFSSFFGDFGFHFGGENEREREVARG 195
D ++R YD+ G + +EG + + ++ + ER+ +A
Sbjct: 62 DPERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEW-RGKRNKTERKASLADL 120
Query: 196 ANIDIDLYV-------TLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGR 248
+ + L +G+ + + +
Sbjct: 121 LSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEALAGVKKAVAR-------- 172
Query: 249 FQMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIR 308
L+ I+ G +G+ + + G G
Sbjct: 173 ------------------LLGKALKSTIKAGALEGKALRLKGLLKSA-RGALGKARLKEL 213
Query: 309 TLPHPRFERRGDDLYTN 325
+ HP F GDD Y
Sbjct: 214 SKRHPPFALEGDDKYPV 230
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 86.4 bits (213), Expect = 3e-18
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
+RD YEVLG+ R+AD +IK A+R LAKK HPD+N A + F E+ A ++LS+ KK
Sbjct: 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKK 59
Query: 148 RQRYDQCGMECVKKEGMME-GMDPFSSFF 175
R YD+ G + V +E + D F+SFF
Sbjct: 60 RANYDKYGHDGVDREDDFDFQADVFNSFF 88
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 83.2 bits (206), Expect = 1e-17
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
E+D Y+ LGV +A + +IK AYR LA+++HPD NP D A+ +F+ + A+++LSD K
Sbjct: 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67
Query: 148 RQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGG 184
R+ YD+ + G F D G FGG
Sbjct: 68 RKEYDET-------RRLFAG-GGFGGRRFDGGGGFGG 96
Score = 59.0 bits (143), Expect = 1e-09
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 257 CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEP-GDLIFHIRTLPHPRF 315
C+EC + V I G++DGQ+ + +GE + G P GDL + P F
Sbjct: 229 CEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVF 288
Query: 316 ERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYEN 375
R GDDL + +S + G + LDG + V+ T G +R + G+P +
Sbjct: 289 GRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVP--KR 345
Query: 376 NNAKGVLYITFDVEFPKNELSEEEKE 401
+ G L +T V P N L E
Sbjct: 346 SGGAGDLLVTVKVAVPPN-LDGAAAE 370
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 57.7 bits (139), Expect = 5e-09
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 47 VFVIMAVVFIVLLLEHFTDPPKVKRTHRGFNPYPPRPKASKERDLYEVLGVPRNADSNKI 106
+F I+ + I L+ + R RGF+PY E+LG+ ++ I
Sbjct: 71 IFTIVGWLVISYLISNIRTLKIEYR--RGFDPY-------------EILGIDQDTSERDI 115
Query: 107 KSAYRALAKKMHPDKNPN-----DDQAQAKFQELGAAYEILSDEKKRQRY 151
K YR L+ K HPDK P + + K++ + AY +L+D+K+R+ Y
Sbjct: 116 KKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENY 165
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 47.4 bits (113), Expect = 1e-06
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 84 KASKERDLYEVLGVPRNADSN--KIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEI 141
+ + L ++LG+PR+A N ++ AY + HPDK +++ K +EL Y+
Sbjct: 1 REESKE-LMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEE----KMKELNTLYKK 55
Query: 142 LSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGD 177
+ K R D G E E + FGD
Sbjct: 56 FRESVKSLR-DLDGEEDSSSEEEDVPSGYVGATFGD 90
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 49.0 bits (118), Expect = 2e-06
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 90 DLYEVLGVPRNADSNKIKSAYRALAKKMHPDK-----NPND--DQAQAKFQELGAAYEIL 142
D Y+VLGV + D +IK AYR L + HPDK P + + A+ K QE+ AAYE++
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260
Query: 143 SDEKK 147
+K
Sbjct: 261 KKQKG 265
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 46.6 bits (110), Expect = 1e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 83 PKASKERDLYEVLGVPR---NADSNKIKSAYRALAKKMHPDK-----NPNDDQAQAKFQE 134
K K+ DLY +LG+ + A +I A++ K HPDK N D+ F+
Sbjct: 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF---FKL 93
Query: 135 LGAAYEILSDEKKRQRYDQC 154
+ A E+L D K R +YD
Sbjct: 94 IQKAREVLGDRKLRLQYDSN 113
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 46.3 bits (109), Expect = 2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKRQRY 151
Y++LGV NAD +I Y LA+ +P K + ++ KF+++ AY+IL D K++ Y
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKR-SGNEGFHKFKKINEAYQILGDIDKKKMY 634
Query: 152 DQCGMECVKKEGMM 165
++ G + +K +
Sbjct: 635 NKFGYDGIKGVNFI 648
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 42.7 bits (101), Expect = 3e-04
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 89 RDLYEVLGVPRNADSN--KIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
++L ++LG+P A N ++ AY K+ HPDK +++ K + L + Y+ L +
Sbjct: 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEE----KMKRLNSLYKKLQEGV 66
Query: 147 KRQR 150
K R
Sbjct: 67 KSAR 70
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 38.1 bits (89), Expect = 0.003
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDK-NPNDDQ------AQAKFQELGAAYE 140
D +VLGV AD + IK AYR L + HPDK + + K QE+ AYE
Sbjct: 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 33.4 bits (77), Expect = 0.016
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 225 KPALGTRKCN-CR---QEMQTRQLGPGRFQMMQQTVCDEC 260
KP + C C Q Q + G G FQ QT C C
Sbjct: 10 KPGTKPKTCPTCGGSGQVRQVQGTGFGFFQT--QTTCPTC 47
>gnl|CDD|238109 cd00185, TNFR, Tumor necrosis factor receptor (TNFR) domain;
superfamily of TNF-like receptor domains. When bound to
TNF-like cytokines, TNFRs trigger multiple signal
transduction pathways, they are involved in inflammation
response, apoptosis, autoimmunity and organogenesis.
TNFRs domains are elongated with generally three tandem
repeats of cysteine-rich domains (CRDs). They fit in the
grooves between protomers within the ligand trimer. Some
TNFRs, such as NGFR and HveA, bind ligands with no
structural similarity to TNF and do not bind ligand
trimers.
Length = 98
Score = 30.9 bits (70), Expect = 0.29
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 252 MQQTVCDECPNVRFKNEEHHLE 273
TVC+ CP + + +HL
Sbjct: 30 GSDTVCEPCPPGTYTDSWNHLP 51
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 31.7 bits (72), Expect = 0.32
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 102 DSNKIKSAYRALAKKMHPDK---NPNDDQAQA--KFQELGAAYEILSDEKKRQRY 151
D +++ + YR LA+++HPD+ P +Q A + L AY+ L +R RY
Sbjct: 19 DLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 31.4 bits (71), Expect = 0.37
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 102 DSNKIKSAYRALAKKMHPDKNPN-DDQAQAKFQ--ELGAAYEILSDEKKRQRY 151
D ++++ YR L + HPD + +Q A Q L AY L D +R Y
Sbjct: 4 DQSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 31.4 bits (71), Expect = 0.40
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 92 YEVLGVPR--NADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQ---ELGAAYEILSDEK 146
+++LG+P+ N D ++ Y A+ K HPDK + + EL AY L D
Sbjct: 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64
Query: 147 KRQRY 151
KR Y
Sbjct: 65 KRAEY 69
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 32.5 bits (75), Expect = 0.43
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 8 SSFSSSLFYCILTIFRKNYLHKRSVMTLLRRFYS-FLKYFVFVIMAVVFIVLL 59
++ L + K TLL R+YS ++ +I+ + I L
Sbjct: 77 AALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAIIIIIFLIGYL 129
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 31.8 bits (73), Expect = 0.51
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1 MSAHLRKSSFSSSLFYCILTIF----RKN---YLHKRSVMTLLRRFYSFLKYFVFVIMAV 53
+ L + + +L + R N H + R L+ ++V++ +
Sbjct: 80 FAVALGAALLALALVLLVFEFLRRLLRPNGLAIRHFGWPKERVARLRRRLRRLIWVLVPL 139
Query: 54 VFIVLLLEH 62
+FI + E+
Sbjct: 140 LFISIFAEN 148
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence
gene in Salmonella enterica serovar. Typhimurium greatly
reduces virulence in a mouse model of typhoid-like
disease. Open reading frames encoding homologues of MviN
have since been identified in a variety of bacteria,
including pathogens and non-pathogens and
plant-symbionts. In the nitrogen-fixing symbiont
Rhizobium tropici, mviN is required for motility. The
MviM protein is predicted to be membrane-associated.
Length = 452
Score = 31.1 bits (71), Expect = 1.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 9 SFSSSLFYCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLLEHFTDPP 67
+ ++SL I +F L KR LR + +FL V + ++LLL T
Sbjct: 382 ALATSLSAWINLVFLYYILRKRLGGHSLRGWKTFLASLVVPTALMGGVILLLSSLTQGL 440
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 45 YFVFVIMAVVFIVLLLEHFTDPPKVKRTHRGFNPYPPRPKA 85
+ +I +V +VLLL G N Y P P A
Sbjct: 81 LLIPLIGFIVLLVLLL---------LPGTPGPNRYGPDPLA 112
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 30.7 bits (70), Expect = 1.1
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 10 FSSSLFYCIL-TIFRKNYLHKRSVMTL-LRR-----FYSFLKYFVFVIMAVVFIVLLLEH 62
+ Y L + RK + + L+R F F+ F+I+ + +I+
Sbjct: 177 IYCIIAYGALFFVIRKKFNKNSQTKSKSLKREVRLAFQVFILVLAFLIILIFYILSNYFS 236
Query: 63 FTDPPKVKRTHRGFNPYP 80
T R YP
Sbjct: 237 QTQNTDPIFYLRAL--YP 252
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 30.0 bits (68), Expect = 1.6
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 89 RDLYEVLGVPRN--ADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGA-----AYEI 141
D + + G+P D + +AYR + ++HPD+ A+ + A AY+
Sbjct: 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQT 65
Query: 142 LSDEKKRQRY 151
L D KR RY
Sbjct: 66 LRDPLKRARY 75
>gnl|CDD|236884 PRK11234, nfrB, bacteriophage N4 adsorption protein B;
Provisional.
Length = 727
Score = 30.5 bits (69), Expect = 1.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 42 FLKYFVFVIMAVVFIVLLLEHFTDPPK-VKRTHRGFNPYPPRPKASKERDLYEV 94
LK + ++FI L + F D V+R R + Y P+ R+LY+
Sbjct: 8 GLKVIAITLAVLMFISGLDDLFIDVVYWVRRIKRKLSVYRRYPRM-SYRELYKP 60
>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
GT1 family of glycosyltransferases. WavL in Vibrio
cholerae has been shown to be involved in the
biosynthesis of the lipopolysaccharide core.
Length = 355
Score = 30.3 bits (69), Expect = 1.9
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 58 LLLEHFTDPPKVKRTHRGFNP--YPPRPKASKE-RDLYEVLGVPRNA 101
+ + DP +++ RG + + P + L +P+
Sbjct: 139 IRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGK 185
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 27.7 bits (62), Expect = 1.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 225 KPALGTRKCN-CR---QEMQTRQLGPGRFQMMQQTVCDEC 260
KP + C C Q ++ ++ G FQM Q C +C
Sbjct: 10 KPGKKPKTCPQCNGSGQVVKRQRTPGGVFQM--QQTCPKC 47
>gnl|CDD|216716 pfam01810, LysE, LysE type translocator. This family consists of
various hypothetical proteins and an l-lysine exporter
LysE from Corynebacterium glutamicum which is proposed
to be the first of a novel family of translocators. LysE
exports l-lysine from the cell into the surrounding
medium and is predicted to span the membrane six times.
The physiological function of the exporter is to excrete
excess l-Lysine as a result of natural flux imbalances
or peptide hydrolysis; and also after artificial
deregulation of l-Lysine biosynthesis as used by the
biotechnology. industry for the production of l-lysine.
Length = 191
Score = 29.6 bits (67), Expect = 1.9
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 10 FSSSLFYCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLLE 61
+SL + L F + L +R L + + ++ + LL
Sbjct: 143 VVASLIWFSLLAFLASRLARR----LSTKKVRIINVIAGALLIGFGVYLLYS 190
>gnl|CDD|177102 MTH00016, CYTB, cytochrome b; Validated.
Length = 378
Score = 30.4 bits (69), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEHFT 64
L RF++ FVI A+ I LL H T
Sbjct: 176 LTRFFALHFLLPFVIAALSMIHLLFLHQT 204
>gnl|CDD|214440 MTH00156, CYTB, cytochrome b; Provisional.
Length = 356
Score = 30.1 bits (69), Expect = 2.1
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 36 LRRFYSFLKYFV--FVIMAVVFIVLLLEHFT 64
L RF++F +F+ F+I+A+V I LL H T
Sbjct: 165 LTRFFTF--HFLLPFIILAMVMIHLLFLHQT 193
>gnl|CDD|177203 MTH00145, CYTB, cytochrome b; Provisional.
Length = 379
Score = 29.9 bits (68), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 36 LRRFYSFLKYFV--FVIMAVVFIVLLLEH 62
L+RF+S +F+ FVI+ + + LL H
Sbjct: 176 LKRFFSL--HFLLPFVILGLSVLHLLFLH 202
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 28.3 bits (63), Expect = 2.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPD 120
+ Y++L + A +I+ A++ L + HPD
Sbjct: 65 SEAYKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 29.8 bits (67), Expect = 3.4
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 289 TAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFKFDIDQLD 345
TA+G HID TL +FE DL +++AL K +D
Sbjct: 321 TADGPKHID----------TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDID 367
>gnl|CDD|114838 pfam06143, Baculo_11_kDa, Baculovirus 11 kDa family. Family of
uncharacterized Baculovirus proteins that are all about
11 kDa in size.
Length = 84
Score = 27.3 bits (61), Expect = 4.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 41 SFLKYFVFVI-------MAVVFIVLLLEHFTDPPKVKRTHRGFN 77
SFL+ FV VI M V+FI+LL+ + ++ +
Sbjct: 31 SFLRDFVLVICGFVVFVMIVLFILLLVNINKNAELIEAQKQQRE 74
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 28.7 bits (65), Expect = 4.1
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 10 FSSSLFYCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLLEHFT 64
F + L +F +++L + + L R + +++ ++ ++ L +T
Sbjct: 72 FLALLVIFFALLFARSFLELKKYLPRLDRLL----LGLALLLLLLLLLAPLFPYT 122
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
This is a domain of seven transmembrane regions that
forms the C-terminus of some subclass 3
G-coupled-protein receptors. It is often associated with
a downstream cysteine-rich linker domain, NCD3G
pfam07562, which is the human sweet-taste receptor, and
the N-terminal domain, ANF_receptor pfam01094. The seven
TM regions assemble in such a way as to produce a
docking pocket into which such molecules as cyclamate
and lactisole have been found to bind and consequently
confer the taste of sweetness.
Length = 238
Score = 28.7 bits (65), Expect = 4.5
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 12 SSLF---YCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLLEHFTDPPK 68
S L I+ IF+K+ + + +L + V + V I+ ++ DPP
Sbjct: 72 SCLLVKTNRIVRIFKKSSPGRPRLKSLPKG----QLLIVLGLTLVQVIICVIWLVVDPPF 127
Query: 69 VKRTHRGFNPYP 80
+ +P
Sbjct: 128 P---TKDIHPEK 136
>gnl|CDD|177159 MTH00097, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 121
Score = 27.9 bits (63), Expect = 4.8
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 9 SFSSSLFYCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLL 60
S S+F+ F K Y + + +Y+ VF I+ V+ +
Sbjct: 56 SLFLSMFFFFFFYFFKVYFFSNLSLNVFELYYNIFWLIVFFILFVLLFFMNF 107
>gnl|CDD|165034 PHA02655, PHA02655, hypothetical protein; Provisional.
Length = 94
Score = 27.2 bits (60), Expect = 5.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 9 SFSSSLFYCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLL 60
+F SLF I I K + +++ Y+ LK+ VF I + F+++++
Sbjct: 32 TFLVSLFISICFII------KLDIKEIIKNQYTMLKFVVFTIYLIPFVIVMI 77
>gnl|CDD|177189 MTH00131, CYTB, cytochrome b; Provisional.
Length = 380
Score = 28.5 bits (64), Expect = 6.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEHFT 64
L RF++F F FVI A + LL H T
Sbjct: 175 LTRFFAFHFLFPFVIAAATILHLLFLHET 203
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 28.8 bits (65), Expect = 6.2
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 56 IVLLLEHFTDPPKVKRTHRGFNPYPPRPKASKERDLYEVLGVPRNADSNKIKSAYRALAK 115
I +L + P P+A +L G + + + A +
Sbjct: 343 IAGMLAALLPI-----VDEIYTTPLPWPRALDAEELLAFAGERGGVELDDVAEALELALE 397
Query: 116 K 116
K
Sbjct: 398 K 398
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 28.2 bits (64), Expect = 7.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 316 ERRGDDLYTNI--TISLQDALTGFKFD 340
R G +TN T L+ AL + FD
Sbjct: 103 FRHGSAKHTNAMKTEGLKQALEKYGFD 129
>gnl|CDD|237159 PRK12651, PRK12651, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 158
Score = 27.5 bits (62), Expect = 7.3
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 16 YCILTIFRKNYLHKRSVMTLLRRFYSFLKYFVFV----IMA---VVFIVL 58
+L +FR+ L R LRR Y +K I A V IVL
Sbjct: 35 LFVLFLFRR-LLPAR---FYLRRIYKLIKLVPIFLKELIKANIDVAKIVL 80
>gnl|CDD|153370 cd07686, F-BAR_Fer, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Fer (Fes related)
tyrosine kinase. F-BAR domains are dimerization modules
that bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Fer (Fes related) is a cytoplasmic (or nonreceptor)
tyrosine kinase expressed in a wide variety of tissues,
and is found to reside in both the cytoplasm and the
nucleus. It plays important roles in neuronal
polarization and neurite development, cytoskeletal
reorganization, cell migration, growth factor signaling,
and the regulation of cell-cell interactions mediated by
adherens junctions and focal adhesions. Fer kinase also
regulates cell cycle progression in malignant cells. It
contains an N-terminal F-BAR domain, an SH2 domain, and
a C-terminal catalytic kinase domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 234
Score = 28.1 bits (62), Expect = 7.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
E ++Y+V + K+K +YR L K++ + A+ K+++ A + EK
Sbjct: 118 EAEMYKV----TKTELEKLKCSYRQLTKEV--------NSAKEKYKD--AVAKGKETEKA 163
Query: 148 RQRYDQCGME 157
R+RYD+ M+
Sbjct: 164 RERYDKATMK 173
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 28.0 bits (63), Expect = 7.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 33 MTLLRRFYSFLKYFVFVIMAVVFIVLLL 60
M L R L + +++ ++ + LLL
Sbjct: 1 MPLFSRGKKLLLLLLLILLLLLALALLL 28
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 27.6 bits (62), Expect = 9.0
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 10 FSSSLFYCILTIF--RKNYLHKRSVMTLLRRFYSFLKYFVFVIMAVVF 55
F L Y +L + + + + F+ I VF
Sbjct: 128 FVGGLLYMLLQTALSYRLGPTPVLRKSFRLKLILSIIAFISAIPFGVF 175
>gnl|CDD|219993 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 28.0 bits (63), Expect = 9.7
Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 9 SFSSSLFYCILTIFRKNYLHKRSV-MTLLRRFYSFLKYFVFV-IMAVVFIVLLLEHFT 64
+++ + Y ++ + Y +K+ + + LL L F+ ++ ++ E F+
Sbjct: 241 LYAAIIIYYTISKKKLCYSYKKIIPLALLTILLILLPVVFFILDISNWWVREWSELFS 298
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 27.9 bits (63), Expect = 10.0
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 46 FVFVIMAVVFIVLLLEHFTDPPKVKRTHRGFNPYPPRP 83
+ VI+ VV I+++L ++ P PP P
Sbjct: 5 LILVIIVVVIIIIILLWQSNNNNNTPNPPNPPPNPPPP 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,073,147
Number of extensions: 2091254
Number of successful extensions: 2441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2291
Number of HSP's successfully gapped: 103
Length of query: 401
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 302
Effective length of database: 6,546,556
Effective search space: 1977059912
Effective search space used: 1977059912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)