RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1364
(401 letters)
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 218 bits (557), Expect = 2e-68
Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 60/327 (18%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y +LGV D IK+AYR LA+K HPD + ++ A+AKF++L A+E+L DE++R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRR 86
Query: 149 QRYDQCGMECVKKEGMMEG----------MDPFSSFFGDFGFHFGGENEREREVARGANI 198
YDQ + + F F + R+ ARG ++
Sbjct: 87 AEYDQLWQH--RNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQH-AARGHDL 143
Query: 199 DIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVCD 258
+I++ V LEE ++ N P
Sbjct: 144 EIEVAVFLEETLAEQTRTISYNLP----------------------------------VY 169
Query: 259 ECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHID-GEPGDLIFHIRTLPHPRFER 317
+ L V+I G+ DGQ+ + +G P + G GDL I PHP F+
Sbjct: 170 NVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDI 229
Query: 318 RGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKI---TWPGARIRKKNEGMPSYE 374
G +L + ++ +A G K + L I + + + G R+R K +G+
Sbjct: 230 VGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILL---TVPPGSQAGQRLRIKGKGLV--- 282
Query: 375 NNNAKGVLYITFDVEFPKNELSEEEKE 401
+ G L+ + P E+ +E
Sbjct: 283 SKTHTGDLFAVIKIVMPTK-PDEKARE 308
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 205 bits (523), Expect = 4e-65
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 35/207 (16%)
Query: 195 GANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQ 254
+ DL V+LEE+Y+G C + ++ +
Sbjct: 2 DPPVTHDLRVSLEEIYSG--------------------CTKKMKISHK------------ 29
Query: 255 TVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPR 314
+NE+ L +E++ G K+G + F EG+ + P D++F ++ PH
Sbjct: 30 --RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNI 87
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYE 374
F+R G D+ ISL++AL G ++ LDGR I V + + PG R + EG+P +
Sbjct: 88 FKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPK 147
Query: 375 NNNAKGVLYITFDVEFPKNELSEEEKE 401
+G L I F+V FP+ + + +
Sbjct: 148 TPEKRGDLIIEFEVIFPER-IPQTSRT 173
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 200 bits (510), Expect = 3e-63
Identities = 66/205 (32%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 198 IDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTVC 257
++ L VTLEELY G R++++
Sbjct: 6 HEVPLLVTLEELYLG----------------------KRKKIKVT--------------R 29
Query: 258 DECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDG-EPGDLIFHIRTLPHPRFE 316
+ +NEE+ +EVEI+ G KDG + ++ EG+ G PGDL+ I+T HPRF
Sbjct: 30 KRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFT 89
Query: 317 RRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENN 376
R L +TI L ALTGF + LD R + + ++I P R NEGMP
Sbjct: 90 RDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQP 149
Query: 377 NAKGVLYITFDVEFPKNELSEEEKE 401
KG L + FD+ FPK+ L+ E+K+
Sbjct: 150 GQKGDLILEFDICFPKS-LTPEQKK 173
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 201 bits (514), Expect = 6e-63
Identities = 74/245 (30%), Positives = 111/245 (45%), Gaps = 36/245 (14%)
Query: 188 REREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVM---------KPALGTRKC-NCR- 236
R R RG +I ++ +LEELY G ++ NK ++ K +KC +C
Sbjct: 4 RPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNG 62
Query: 237 --QEMQTRQLGPGRFQMMQQTVCDEC----PNVRFKN------------EEHHLEVEIEM 278
+ TRQ+GP + QT CD C + K+ E LEV +E
Sbjct: 63 QGIKFVTRQMGPMIQRF--QTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP 120
Query: 279 GMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLYTNITISLQDALTGFK 338
GMKDGQ+ F E + D PGD++F + PH F+R GDDL I L A+ G +
Sbjct: 121 GMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180
Query: 339 FDIDQLDGR--KITVERQKITWPGARIRKKNEGMPSYENNNAKGVLYITFDVEFPKNELS 396
F ++ + G K+ + ++ PG R + +GMP G L I F ++ P+N
Sbjct: 181 FALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP-KYGGYGNLIIKFTIKDPEN-HF 238
Query: 397 EEEKE 401
E+
Sbjct: 239 TSEEN 243
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 188 bits (481), Expect = 4e-59
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 41/206 (19%)
Query: 197 NIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTV 256
+ ++L V+LE+L+ G ++ + + GP
Sbjct: 2 TVQVNLPVSLEDLFVG----------------------KKKSFKIGRKGPHG-------- 31
Query: 257 CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHID-GEPGDLIFHIRTLPHPRF 315
+E+ ++++++ G K G + + +G+ + G L F I+ HP F
Sbjct: 32 ---------ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNF 82
Query: 316 ERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYEN 375
+R GDDL + +S +++L GF I +DGR + + R + P +GMP+ +N
Sbjct: 83 KRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKN 142
Query: 376 NNAKGVLYITFDVEFPKNELSEEEKE 401
+ +G L + + V++P + L++ +K
Sbjct: 143 PSQRGNLIVKYKVDYPIS-LNDAQKR 167
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 128 bits (323), Expect = 3e-35
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
++ Y +LGV + A S +I+ A++ LA K+HPDKNPN+ A F ++ AYE+L DE R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 149 QRYDQCGMECVK------KEGMMEGMDPFSSFFGDFGFHFGGENEREREVARGANIDIDL 202
++YD+ G + ++ E F + D E + V G ++
Sbjct: 62 KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 121
Query: 203 Y 203
Y
Sbjct: 122 Y 122
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 122 bits (309), Expect = 1e-34
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YE+LGV + A+ +I+ AY+ LA K HPD+N D +A+AKF+E+ AYE+L+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 149 QRYDQCGMECVKKEGMMEGMDPFSSFFGD-----FGFHFGG 184
YDQ G ++ GM G + F D FG FGG
Sbjct: 63 AAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 122 bits (307), Expect = 2e-34
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-DQAQAKFQELGAAYEILSDEKK 147
YE+L VPR+A ++ IK AYR A + HPDKNP++ + A+ KF+E+ AYE+LSD+ K
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 148 RQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGEN 186
R+ YD+ G E + G G + G G +
Sbjct: 62 REIYDRYGREGLT--GTGTGPSRAEAGSGGPGLEHHHHH 98
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 121 bits (305), Expect = 6e-34
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
++ D Y +LG + +I + ++ A + HPDK+P + +A FQ+L A EIL+
Sbjct: 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74
Query: 144 DEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFG 183
+E+ R RYD + + + + G G
Sbjct: 75 NEESRARYDHWRRSQM--SMPFQQWEALNDSVKTSGPSSG 112
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 119 bits (301), Expect = 2e-33
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 80 PPRPKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAY 139
R ++ LY VLG+ +NA S+ IK +YR LA K HPDKNP++ +A KF+E+ A+
Sbjct: 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
Query: 140 EILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGF 180
IL+D KR YD+ G + G + +++F
Sbjct: 68 AILTDATKRNIYDKYGSLGL-YVAEQFGEENVNTYFVSGPS 107
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 121 bits (304), Expect = 3e-33
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND------DQAQAKFQELGA 137
+ ++D Y +LG +A+ + +K Y+ L HPDK D ++ KF E+
Sbjct: 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64
Query: 138 AYEILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGE 185
A++IL +E+ ++ YD E + G + + ++ G
Sbjct: 65 AWKILGNEETKREYDLQRCEDDLRNV---GPVDAQVYLEEMSWNEGDH 109
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 117 bits (296), Expect = 9e-33
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
LY++LGVP A +IK+AY HPD+N +A +F + AY +L
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 147 KRQRYDQCGMECVKKEGMMEGMDPFS 172
R++YD+ + G G P S
Sbjct: 75 LRRKYDRGLLSDEDLRGP--GSGPSS 98
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 115 bits (289), Expect = 5e-32
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 85 ASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSD 144
+ D Y++LGVPRNA +IK AY LAKK HPD N +D +A+ KF +L AYE+LSD
Sbjct: 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62
Query: 145 EKKRQRYDQCG 155
E KR++YD G
Sbjct: 63 EVKRKQYDAYG 73
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 115 bits (290), Expect = 6e-32
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
KE LY++LGV +A+ ++K YR A K HPDK D + KF+E+ A+EIL+D +
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQ 62
Query: 147 KRQRYDQCGMECVKKEGMMEGMDPFSSFFG 176
KR+ YDQ G+E + G G G
Sbjct: 63 KREIYDQYGLEAARSGGPSFGPGGPGGAGG 92
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 115 bits (291), Expect = 1e-31
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGR--KITVERQKITWPGARIRKKNEGMPS 372
F+R GDDL I L A+ G +F ++ + G K+ + ++ PG R + +GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 373 YENNNAKGVLYITFDVEFPKN-ELSEEEKE 401
G L I F ++FP+N SEE +
Sbjct: 62 P-KYGGYGNLIIKFTIKFPENHFTSEENLK 90
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 112 bits (283), Expect = 6e-31
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-DQAQAKFQELGAAYEIL 142
+S + YEVLGV +A IK AYR LA + HPDKNP++ ++A+ KF+ + AYE+L
Sbjct: 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63
Query: 143 SDEKKRQRYDQCGMECVKKEGMMEG 167
SD KKR YD+ G + + G G
Sbjct: 64 SDSKKRSLYDRAGCDSWRAGGGASG 88
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 110 bits (278), Expect = 2e-30
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y+ LG+ R A +IK AYR A + HPDKN + A+ KF+E+ AY++LSD +KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 149 QRYDQCGMECVKKEG 163
+ +D+ G E +K G
Sbjct: 62 EIFDRYGEEGLKGSG 76
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 110 bits (278), Expect = 2e-30
Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-DQAQAKFQELGAAYEIL 142
+S D YEVL VPR A S IK AYR LA K HPDKNP + ++A+ +F+++ AYE+L
Sbjct: 4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63
Query: 143 SDEKKRQRYDQCGMECVK 160
SD KKR YD+ G
Sbjct: 64 SDAKKRDIYDRYGSGPSS 81
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 109 bits (275), Expect = 7e-30
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 82 RPKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEI 141
+ ++ + D Y VLGV R A IK AY+ LA++ HPDKN D A+ +F ++ AYEI
Sbjct: 10 QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEI 68
Query: 142 LSDEKKRQRYDQCG 155
LS+E+KR YD G
Sbjct: 69 LSNEEKRTNYDHYG 82
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 108 bits (271), Expect = 2e-29
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKK 147
D YE+LGV R A +K AYR LA K HPDKN A F+ +G AY +LS+ +K
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEK 64
Query: 148 RQRYDQCG 155
R++YDQ G
Sbjct: 65 RKQYDQFG 72
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 108 bits (272), Expect = 2e-29
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDD------QAQAKFQELGA 137
+ + ++D Y +LG +A+ + +K Y+ L HPDK D + KF E+
Sbjct: 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70
Query: 138 AYEILSDEKKRQRYDQCG 155
A++IL +E+ +++YD
Sbjct: 71 AWKILGNEETKKKYDLQR 88
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 108 bits (271), Expect = 2e-29
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
Y++LGVP++A +IK A+ LA K HPDKN A+AKF+E+ AYE LSD +R
Sbjct: 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRR 65
Query: 149 QRYDQCG 155
+ YD G
Sbjct: 66 KEYDTLG 72
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 107 bits (270), Expect = 2e-29
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 87 KERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
KE Y+VLGV +A N++K AYR +A K HPDKNP+ +F+++ AYE+LSDEK
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEK 62
Query: 147 KRQRYDQCGME 157
KRQ YDQ G E
Sbjct: 63 KRQIYDQGGEE 73
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 106 bits (265), Expect = 3e-28
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 86 SKERDLYEVLGVPRNADSNK--IKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
+ L ++LG+ R+A N ++ AY K+ HPDK +++ K +++ Y+ +
Sbjct: 5 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKME 60
Query: 144 DEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGF 180
D K G E G D + ++ F
Sbjct: 61 DGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNE 97
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 104 bits (261), Expect = 1e-27
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 88 ERDLYEVLGVPRNADS-NKIKSAYRALAKKMHPDKNPNDDQ---AQAKFQELGAAYEILS 143
+ Y+VL V R K+ AYRALA+K HPD+ N ++ A+ +F+ + AYE L
Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73
Query: 144 DEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFG 183
D++ + YD F +++ +
Sbjct: 74 DDEAKTNYDYYL---------DHPDQRFYNYYQYYRLRAA 104
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 103 bits (258), Expect = 2e-26
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 84 KASKERDLYEVLGVPRNADSNK--IKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEI 141
+ L ++LG+ R+A N ++ AY K+ HPDK +++ K +++ Y+
Sbjct: 6 NREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKK 61
Query: 142 LSDEKKRQRYDQCGMECVKKEGMMEGMDPF--SSFFGDF 178
+ D K G E ++P + + +
Sbjct: 62 MEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQW 100
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 105 bits (263), Expect = 9e-25
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
+ +++ Y +LGV + A S +I+ A++ LA K+HPDKNPN+ A F ++ AYE+L
Sbjct: 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75
Query: 144 DEKKRQRYDQCGMECVKKEGMMEG------MDPFSSFFGDFGFHFGGENEREREV----- 192
DE R++YD+ G + ++ + F + D E + V
Sbjct: 76 DEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 135
Query: 193 ------ARGANIDIDLYVTLEELYNG 212
+ G++ DL T E
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKE 161
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 92.5 bits (230), Expect = 2e-23
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
+ +D +++LGV A +++ AYR LA +HPDK ++ F+ + A L
Sbjct: 22 RIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALL 80
Query: 144 DEKKRQRYD 152
K
Sbjct: 81 KNIKSGPSS 89
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 91.3 bits (227), Expect = 4e-23
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 83 PKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-DQAQAKFQELGAAYEI 141
P+ S +++ V+ ++ K R L K HPDKNP + D A F+ L
Sbjct: 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINR 69
Query: 142 LSDEKKRQRYDQCGMECVK 160
L K+ DQ +
Sbjct: 70 LE---KQAFLDQNADRASR 85
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 93.6 bits (233), Expect = 5e-21
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDD---QAQAKFQELGAAYE 140
K S++RD Y++LGV RNA +I AYR LA + HPD N++ +A+ KF ++ AA E
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436
Query: 141 ILSDEKKRQRYDQ 153
+LSD + R+++D
Sbjct: 437 VLSDPEMRKKFDD 449
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 76.5 bits (188), Expect = 8e-17
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 17/133 (12%)
Query: 86 SKERDLYEVLGVPR--NADSNKIKSAYRALAKKMHPDKNPNDDQ-----AQAKFQELGAA 138
S + +E+ G+P D + + S +RAL K+ HPD + A + ++ A
Sbjct: 1 SNAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDA 60
Query: 139 YEILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGENEREREVARGANI 198
Y+ L D +R Y ++G++ + F E RE
Sbjct: 61 YQTLKDPLRRAEYLL----------SLQGIEMNAEQQTLQDPMFLMEQMELREELESVTA 110
Query: 199 DIDLYVTLEELYN 211
D L
Sbjct: 111 CADPEAALVAFDT 123
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 71.5 bits (175), Expect = 5e-16
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 84 KASKERDLYEVLGVPRNADSN--KIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEI 141
+ + L E+L +PR + +++ AY+ + +HPDK + A QEL + +
Sbjct: 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGT 61
Query: 142 LSDEKKRQRYDQ 153
E R +
Sbjct: 62 FKTEVYNLRMNL 73
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 70.0 bits (171), Expect = 2e-14
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 90 DLYEVLGVPR--NADSNKIKSAYRALAKKMHPDKNPNDD-----QAQAKFQELGAAYEIL 142
D + + G+P D+ + ++ L ++ HPDK + A + + A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 143 SDEKKRQRYD 152
R Y
Sbjct: 62 RHPLMRAEYL 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 68.7 bits (167), Expect = 6e-14
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQ---AQAKFQELGAAYEILSDEKKR 148
++ +G+ ++K YR +HPDK A+ F EL A+ ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 149 QRY 151
Y
Sbjct: 180 PLY 182
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 67.1 bits (163), Expect = 4e-13
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 86 SKERDLYEVLGVPR--NADSNKIKSAYRALAKKMHPDKNPNDD-----QAQAKFQELGAA 138
RD + ++ R D+ K++ Y+ L + +HPD ++ + A
Sbjct: 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99
Query: 139 YEILSDEKKRQRY--DQCGMECVKKEGMMEGMD 169
Y+ L R Y G+E ++
Sbjct: 100 YKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQ 132
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 63.3 bits (155), Expect = 8e-13
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 311 PHPRFERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKI---TWPGARIRKKN 367
HP F+ G +L + ++ +A G K + L I + + + G R+R K
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILL---TVPPGSQAGQRLRIKG 58
Query: 368 EGMPSYENNNAKGVLYITFDVEFPKNELSEEEKE 401
+G+ + G L+ + P E+ +E
Sbjct: 59 KGLV---SKTHTGDLFAVIKIVMPTK-PDEKARE 88
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 64.6 bits (157), Expect = 1e-12
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 84 KASKERDLYEVLGVPR-------NADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELG 136
+ YE+ D ++++ YR L + HPD + + L
Sbjct: 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE---QSSTLN 62
Query: 137 AAYEILSDEKKRQRYDQCGM 156
AY L D +R +Y +
Sbjct: 63 QAYHTLKDPLRRSQYMLKLL 82
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 55.8 bits (135), Expect = 2e-10
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 88 ERDLYEVLGVPRNADS-NKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEK 146
++ ++L + N + K+K +R + HPDK + A ++ A + L
Sbjct: 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLA----TKINEAKDFLEKRG 68
Query: 147 KRQ 149
+
Sbjct: 69 ISK 71
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 56.2 bits (135), Expect = 2e-10
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQ---AQAKFQELGAAYEILSDE 145
++ +G+ ++K YR +HP K A+ F EL A+ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 51.2 bits (122), Expect = 1e-08
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 92 YEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQ-------AQAKFQELGAAYEILSD 144
++ + + + N ++ +Y+ +HPDK A+ F+ L A++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
Query: 145 E 145
Sbjct: 103 L 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 58/422 (13%), Positives = 113/422 (26%), Gaps = 151/422 (35%)
Query: 31 SVMTLLRRFYSFLKYFVFVIMAVVFIVLL---LEHFTDPPKVKRTHRGF---N------- 77
+ L+ +F ++ V F +L L F + N
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---------ENCYLEGNDIHALAA 106
Query: 78 --PYPPRPKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND-------DQA 128
K ++L IK+ A P ++ +
Sbjct: 107 KLLQENDTTLVKTKEL--------------IKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 129 QAK--------------FQELGAAYEILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSF 174
A+ F+EL Y+ Y + +K E +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQT---------YHVLVGDLIKF--SAETLSELIRT 201
Query: 175 FGDFGFHFGGENEREREVARGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALG-TRKC 233
D F +G +++ LE N + + P+ P +G +
Sbjct: 202 TLDAEKVFT----------QG----LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 234 N----CRQEMQTRQLG--PGRFQMMQQ--TVCDECPNV-------------RF-KNEEHH 271
+ + LG PG + + T + + F +
Sbjct: 248 HYVVTA------KLLGFTPGELRSYLKGATGHSQ--GLVTAVAIAETDSWESFFVSVRKA 299
Query: 272 LEVEIEMGMKDGQQT--------KFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDLY 323
+ V +G++ + + + +G P + I L + + +
Sbjct: 300 ITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVN--K 355
Query: 324 TN--------ITISLQDA-----LTGFKFDIDQLDGRKITVERQKITWPG---ARI---- 363
TN + ISL + ++G L G +T+ + K G +RI
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQS---LYGLNLTLRKAKAP-SGLDQSRIPFSE 411
Query: 364 RK 365
RK
Sbjct: 412 RK 413
Score = 30.4 bits (68), Expect = 1.2
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 38/92 (41%)
Query: 161 KEGMMEGMDPFSSF-------------FGD-FGF---------------HFGGENE---R 188
++GM GMD + + F D +GF HFGGE R
Sbjct: 1628 EQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 189 EREVARGANIDIDLYVTLEELYNGNFVEVTRN 220
E A +D + E++ F E+ +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI----FKEINEH 1713
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.028
Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 77/267 (28%)
Query: 89 RDLYEVL--GVPRNADSNKIKSAYRALAKKMHPD---KNPNDDQAQAKFQELGAAYEILS 143
+D+ V N D ++ +++ K D + + + + L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------FWTLL 72
Query: 144 DEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGFHFGGENEREREVARGANIDIDLY 203
+++ + ++ + E + ++ F + R ++ +Y
Sbjct: 73 SKQEE----------MVQKFVEEVLRI------NYKFLM----SPIKTEQRQPSMMTRMY 112
Query: 204 V-TLEELYNGN--FVE--VTRNKPV--MKPALGTRKCNCRQEMQTRQ-------LGPGRF 249
+ + LYN N F + V+R +P ++ AL E++ + LG G+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--------LELRPAKNVLIDGVLGSGKT 164
Query: 250 QMMQQTVCDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRT 309
+ + + L + P ++ ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNL--------KNCN------------SPETVLEMLQK 204
Query: 310 LPH---PRFERRGDDLYTNITISLQDA 333
L + P + R D NI + +
Sbjct: 205 LLYQIDPNWTSRSDHSS-NIKLRIHSI 230
Score = 32.9 bits (74), Expect = 0.21
Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 69/192 (35%)
Query: 24 KNYLH----------KRSVMTL----LRRFYSFLKYFVFV----IMAVVFIVL------- 58
N+ H + S+ L R+ + L VF I ++ ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKS 402
Query: 59 ----LLEHFTDPPKVKRTHRGFNPYPPRPKASKER--DLYEVLGVPRNADS---NKIKSA 109
++ V++ +PK S +Y L V + I
Sbjct: 403 DVMVVVNKLHKYSLVEK----------QPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 110 YRALAKKMHPDKNPN-DDQAQAKFQELGAAYEILSDEKKRQRYDQCGMECVKKEGMMEGM 168
Y D P DQ + +G + + K E M
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF--YSHIG--HHL------------------KNIEHPERM 490
Query: 169 DPFSSFFGDFGF 180
F F DF F
Sbjct: 491 TLFRMVFLDFRF 502
Score = 31.4 bits (70), Expect = 0.68
Identities = 28/257 (10%), Positives = 66/257 (25%), Gaps = 73/257 (28%)
Query: 140 EILSDEKKR-QRYDQCGMECVKK--EGMMEGMDP--FSSFFGDFG-FHFGGENEREREVA 193
E + D + + + E + ++P + F F
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PP-- 383
Query: 194 RGANIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQ 253
A+I L ++ V+ + + T + P + ++
Sbjct: 384 -SAHIPTI---LLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISI-PSIYLELK 436
Query: 254 QTVCDE-----------------CPNVRFKNEE---------HHLEVEIEMGMKDGQ--- 284
+ +E + HHL+ IE +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRM 495
Query: 285 --------QTKFTAEGEPHIDGEP-----GDLIF---HIRTLPHPRFERRGDDLYTNITI 328
+ K + L F +I P++ER + + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFL-P 553
Query: 329 SLQDALTGFKF-DIDQL 344
+++ L K+ D+ ++
Sbjct: 554 KIEENLICSKYTDLLRI 570
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 30.6 bits (70), Expect = 0.25
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 21/80 (26%)
Query: 195 GANIDIDLYVTLEELYNGNFVEVTRNKPVM---------KPALGTRKCNCRQ-----EMQ 240
G++ + +T + G E T N +P GT+ +C
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEP--GTKVQHCHYCGGSGMET 58
Query: 241 TRQLGPGRFQMMQQTVCDEC 260
G F M+ T C C
Sbjct: 59 INT---GPFV-MRST-CRRC 73
Score = 28.3 bits (64), Expect = 1.5
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 319 GDDLYTNITISLQDALTGFKFDI 341
G + + ++ A G +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEF 23
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.1
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 168 MDPFSSF--------FGDFGFHFGGENEREREVARGANI---DIDLYVTLEELYNGNFVE 216
+DP + F F G E + V+ N + L ++ F +
Sbjct: 1009 VDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKD 1068
Query: 217 VTRNKPVMKPAL 228
+++ +
Sbjct: 1069 EPVQNDILQESF 1080
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron
transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A
{Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A*
2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Length = 215
Score = 28.9 bits (65), Expect = 2.3
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 36 LRRFYSFLKYFV-FVIMAVVFIVLLLEHFT 64
L R+YS + + ++I + + L+
Sbjct: 180 LTRYYSAHTFVLPWLIAVFMLLHFLMIRKQ 209
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 28.8 bits (65), Expect = 2.5
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 212 GNFVEVTRNKPV---MKPALGTRKCNCRQEMQTRQLGPG-----RFQMMQ--QTVC---D 258
G++ ++ N V CNC++ + G R + C +
Sbjct: 1 GSYKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGE 60
Query: 259 ECPNVRFKNEEHHLEVEI 276
+C N R + E +E
Sbjct: 61 QCCNQRIQRHEWVQCLER 78
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal,
bacterioruberin, proton pump, TRA protein; HET: GLC RET
22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A*
1uaz_A*
Length = 253
Score = 28.5 bits (63), Expect = 3.5
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 45 YFVFVIMAVVFIVLLLEHFTDPPKVKRT 72
++M + + + K R
Sbjct: 18 GIGTLLMLIGTFYFIARGWGVTDKEARE 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 102 DSNKIKSAYRALAKKMH-PDKNPNDDQAQAKFQELGAAYE 140
+ +K +L K++ D P A A + A E
Sbjct: 18 EKQALKKLQASL--KLYADDSAP----ALA----IKATME 47
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.3 bits (63), Expect = 3.9
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 21/83 (25%)
Query: 53 VVFIVLLLEHFTDPPKV----KR-------------THRGFNPYPPRPKASKERDLYEVL 95
+F+ +LEH P + K+ H +P KA + + +
Sbjct: 108 HIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRV 167
Query: 96 GVPRNADSNKIKSAYRALAKKMH 118
+S R + +
Sbjct: 168 QAYMKGNSL----VGRQIYPLLQ 186
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM
TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2;
2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A*
2qjp_A* 1zrt_C* 2yiu_A*
Length = 445
Score = 28.5 bits (64), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEHFT 64
L RF+S FVI A+V I + H T
Sbjct: 191 LNRFFSLHYLLPFVIAALVAIHIWAFHST 219
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 28.5 bits (64), Expect = 4.6
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 13 SLFYCILT--IFRKN----YLHKRSVMTLLRRFYSFLKYFVFVIMAVVFIVLLLEHFTDP 66
L I+ IF + +++ ++ + R +Y ++Y +AV+ +V E+
Sbjct: 416 GLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKI 475
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C*
1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Length = 385
Score = 27.6 bits (62), Expect = 7.4
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEHFT 64
++RF++ F+I A+V + L+ H
Sbjct: 176 IQRFFALHYLVPFIIAAMVIMHLMALHIH 204
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 27.9 bits (63), Expect = 7.5
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 264 RFKNEEHHLEVEIEMGMKDGQQTKFTAE-------GEPHIDGEPG-------DLIFHIRT 309
+++ + + V K + + A+ P + PG + F++
Sbjct: 131 SLESK-NVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPE 189
Query: 310 LP 311
P
Sbjct: 190 PP 191
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex,
zinc, toxin, plasmid, nuclease, hydrolase, antibiotic,
H-N-H motif, bacteriocin; 1.91A {Escherichia coli}
SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B
1pt3_A 2ivh_A 1ujz_B 2erh_B
Length = 131
Score = 26.5 bits (58), Expect = 8.5
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 37 RRFYSFLKYFVFVIMAVVFIVLLLEHFTDPPKVKRTHRGFNPYPPRPKASKERDLYEV 94
+ F SF + V L + F+ R G P S +R +E+
Sbjct: 42 KEFKSFDDFRKKFWEEVSKDPELSKQFS-RNNNDRMKVGKAPKTRTQDVSGKRTSFEL 98
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 27.7 bits (62), Expect = 8.9
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEH 62
L + L V + +V++
Sbjct: 290 LNGIGTILLILVIFTLLIVWVSSFYRS 316
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide,
sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Length = 217
Score = 27.1 bits (59), Expect = 9.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 285 QTKFTAEGEPHIDGEPGDLIFHIRTLPH 312
+ F P + EPG FH PH
Sbjct: 162 RALFHLRNAPDLMLEPGQTRFHPANAPH 189
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme,
HNH-motif, immune system; 1.60A {Escherichia coli} SCOP:
d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B
2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B
2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Length = 134
Score = 26.5 bits (58), Expect = 9.9
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 37 RRFYSFLKYFVFVIMAVVFIVLLLEHFTDPPKVKRTHRGFNPYPPRPKASKERDLYEV 94
+ F SF + V V L ++ P +G++P+ P+ + R +YE+
Sbjct: 45 KEFKSFDDFRKAVWEEVSKDPELSKNLN-PSNKSSVSKGYSPFTPKNQQVGGRKVYEL 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,423,102
Number of extensions: 400473
Number of successful extensions: 1017
Number of sequences better than 10.0: 1
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 78
Length of query: 401
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 305
Effective length of database: 4,021,377
Effective search space: 1226519985
Effective search space used: 1226519985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)