RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1364
(401 letters)
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 88.5 bits (219), Expect = 2e-22
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYE 374
F+R GDDL + +S +++L GF I +DGR + + R + P +GMP+ +
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61
Query: 375 NNNAKGVLYITFDVEFPKNELSEEEKE 401
N + +G L + + V++P + L++ +K
Sbjct: 62 NPSQRGNLIVKYKVDYPIS-LNDAQKR 87
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 85.1 bits (210), Expect = 2e-21
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D YE+LGV + A+ +I+ AY+ LA K HPD+N D +A+AKF+E+ AYE+L+D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 149 QRYDQCGMECVKK 161
YDQ G ++
Sbjct: 63 AAYDQYGHAAFEQ 75
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 82.8 bits (204), Expect = 2e-20
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 84 KASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAK------FQELGA 137
+ + ++D Y +LG +A+ + +K Y+ L HPDK D A F E+
Sbjct: 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70
Query: 138 AYEILSDEKKRQRYDQ 153
A++IL +E+ +++YD
Sbjct: 71 AWKILGNEETKKKYDL 86
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 78.1 bits (192), Expect = 1e-18
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 315 FERRGDDLYTNITISLQDALTGFKFDIDQLDGR--KITVERQKITWPGARIRKKNEGMPS 372
F+R GDDL I L A+ G +F ++ + G K+ + ++ PG R + +GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 373 YENNNAKGVLYITFDVEFPK 392
G L I F ++ P+
Sbjct: 62 P-KYGGYGNLIIKFTIKDPE 80
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 75.5 bits (185), Expect = 6e-18
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 89 RDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILSDEKKR 148
+D Y+ LG+ R A +IK AYR A + HPDKN + A+ KF+E+ AY++LSD +KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 149 QRYDQCGMECVKKEG 163
+ +D+ G E +K G
Sbjct: 62 EIFDRYGEEGLKGSG 76
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 73.5 bits (180), Expect = 4e-17
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 86 SKERDLYEVLGVPRNADSNK--IKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
+ + L E+L +PR + ++ AY+ + +HPDK + QEL + +
Sbjct: 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLWGTFK 63
Query: 144 DEKKRQRYDQCG 155
E R + G
Sbjct: 64 TEVYNLRMNLGG 75
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 72.3 bits (177), Expect = 2e-16
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 88 ERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPND---DQAQAKFQELGAAYEILSD 144
++ +G+ ++K YR +HPDK A+ F EL A+ +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91
Query: 145 EKKRQRY 151
+ ++ Y
Sbjct: 92 QGQKPLY 98
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 70.1 bits (171), Expect = 5e-16
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 90 DLYEVLGVPRNA--DSNKIKSAYRALAKKMHPDKNPNDDQA-----QAKFQELGAAYEIL 142
D + + G+P D+ + ++ L ++ HPDK + QA + + A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 143 SDEKKRQRYD 152
R Y
Sbjct: 62 RHPLMRAEYL 71
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 70.6 bits (172), Expect = 1e-15
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 86 SKERDLYEVLGVPRNA--DSNKIKSAYRALAKKMHPDKNPNDDQAQAKFQELGAAYEILS 143
+ L ++LG+ R+A + ++ AY K+ HPDK ++++ +++ Y+ +
Sbjct: 5 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKME 60
Query: 144 DEKKRQRYDQCGMECVKKEGMMEGMDPFSSFFGDFGF 180
D K G E G D + ++ F
Sbjct: 61 DGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNE 97
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 67.8 bits (165), Expect = 5e-15
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 83 PKASKERDLYEVLGVPRNADSNKIKSAYRALAKKMHPDKNPNDDQA-QAKFQELGAAYEI 141
P+ S +++ V+ ++ K R L K HPDKNP + F+ L
Sbjct: 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINR 69
Query: 142 LSDEKKRQRYD 152
L + +
Sbjct: 70 LEKQAFLDQNA 80
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 59.2 bits (143), Expect = 5e-12
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 40/118 (33%)
Query: 197 NIDIDLYVTLEELYNGNFVEVTRNKPVMKPALGTRKCNCRQEMQTRQLGPGRFQMMQQTV 256
+ ++L V+LE+L+ G
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIG------------------------------------ 25
Query: 257 CDECPNVRFKNEEHHLEVEIEMGMKDGQQTKFTAEGEPHI-DGEPGDLIFHIRTLPHP 313
+E+ ++++++ G K G + + +G+ + G L F I+ HP
Sbjct: 26 ---RKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP 80
Score = 33.0 bits (75), Expect = 0.008
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 320 DDLYTNITISLQDALTGFKFDID----QLDGRK----ITVERQKITWPGARIRKKNEGMP 371
+ + N+ +SL+D G K G I ++ + G +I KN+G
Sbjct: 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDY 60
Query: 372 SYENNNAKGVLYITFDVE 389
+ + L +
Sbjct: 61 NP-QTGRRKTLQFVIQEK 77
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import
protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 52.4 bits (125), Expect = 9e-10
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 268 EEHHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPH 312
LEV +E GMKDGQ+ F E + D PGD++F + PH
Sbjct: 29 NRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPH 73
Score = 34.7 bits (79), Expect = 0.002
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 317 RRGDDLYTNITISLQDALTGFKFDIDQLDGRKITVERQKITWPGARIRKKNEGMPSYENN 376
+RG D+ I+ SL++ G + L+ + + V + G RI K E + +
Sbjct: 2 QRGKDIKHEISASLEELYKGRTAKL-ALNRKILEVHVEPGMKDGQRIVFKGEADQAP--D 58
Query: 377 NAKGVLYITFDVE 389
G +
Sbjct: 59 VIPGDVVFIVSER 71
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 212
Score = 30.3 bits (68), Expect = 0.27
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 36 LRRFYSFLKYFV-FVIMAVVFIVLLLEHFT 64
L RFYS + + + + + L+
Sbjct: 177 LTRFYSLHTFVLPLLTAVFMLMHFLMIRKQ 206
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 261
Score = 29.7 bits (67), Expect = 0.46
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEHFTDPPKVKRTHRG-----FNPY 79
++RF++ F+I A+V + L+ H + Y
Sbjct: 176 IQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSY 224
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
catalytic domain {Streptomyces albus G [TaxId: 1962]}
Length = 130
Score = 28.0 bits (62), Expect = 0.94
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 71 RTHRGFNPYPPRPKASKERDLYEVLGVPRNADSNK---IKSAYRALAKKMHPDKNPNDDQ 127
G +A+ +++ L R+A +K + +R++ + N
Sbjct: 13 SDWSGGKVSAATARANALVTMWK-LQAMRHAMGDKPITVNGGFRSVTCNSNVGGASNS-- 69
Query: 128 AQAKFQELGAAYEILSDEKKRQRYDQCGMECVKKEGMMEGMDPFSSF 174
G A ++ + + Q E + G +
Sbjct: 70 ----RHMYGHAADLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDH 112
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 25.7 bits (56), Expect = 2.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 253 QQTVCDECPNVRFKNEEHHLE 273
Q T C EC + F E+HL
Sbjct: 36 QDTDCRECESGSFTASENHLR 56
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 321
Score = 27.9 bits (62), Expect = 2.5
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 99 RNADSNKI-KSAYRALAKKMHPDKNPNDDQAQAKFQELGAA 138
+N S + K + ++ HP + + +AK +
Sbjct: 112 QNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKYG 152
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 26.6 bits (59), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 36 LRRFYSFLKYFVFVIMAVVFIVLLLEH 62
L RF++F F+IMA+ + LL H
Sbjct: 161 LTRFFAFHFILPFIIMAIAMVHLLFLH 187
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 26.4 bits (56), Expect = 7.0
Identities = 4/25 (16%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 35 LLRRFYSFLK-YFVFVIMAVVFIVL 58
+++R+ F+K Y + ++ ++
Sbjct: 1 MIKRYLQFVKPYKYRIFATIIVGII 25
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 26.3 bits (57), Expect = 8.0
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 13/113 (11%)
Query: 218 TRNKP-VMKPALGTRKCNCRQEMQTRQLGP----GRFQMMQQTVCDECPNVRFKNEEHHL 272
+P V++ R ++ + F +M + H
Sbjct: 10 DHVRPYVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAP---HSDALGVLPHIH 66
Query: 273 EVEIEMGMKDGQQTKFTAEGEPH----IDGEPGDLIFHIRTLPHPRFERRGDD 321
+ E + + A+ GD R + H F+ + D
Sbjct: 67 QKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTH-TFQIQDPD 118
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
major [TaxId: 5664]}
Length = 302
Score = 26.2 bits (57), Expect = 8.0
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 66 PPKVKRTHRGFNPYPPRPKASKERDLYEVLGVPRN 100
PP+ + + + P P + E L E R
Sbjct: 271 PPRARWGYN----WQPEPG-TPEARLTEYFLTKRQ 300
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 26.0 bits (56), Expect = 8.8
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 270 HHLEVEIEMGMKDGQQTKFTAEGEPHIDGEPGDLIFHIRTLPHPRFERRGDDL 322
H E ++ Q +G+ PGD + H +
Sbjct: 232 HEYHTETFYCLEG--QMTMWTDGQEI-QLNPGDFLHVPANTVH-SYRLDSHYT 280
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,283
Number of extensions: 78409
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 36
Length of query: 401
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,213,086
Effective search space: 380909004
Effective search space used: 380909004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)