BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13644
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2
Length = 1001
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 123/263 (46%)
Query: 2 AWEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 61
WEE R+ E+ R +EE R+ EE R+ EE R++ E RQ EE RQ EE
Sbjct: 598 PWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRSPTEDFRQLPEEDFRQPPEE 657
Query: 62 ICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQ 121
R EE R+ EE R+ EE R+ + R+ E+ R+ EE R + EE RQ
Sbjct: 658 DLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFRRPPEEDFRHSPEEDFRQ 717
Query: 122 TKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 181
+ +E R+ +E R+ E R+ E R+ E R+ E R+ E R+ E
Sbjct: 718 SPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPE 777
Query: 182 ICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQ 241
R+ +E R+ +E R+++EE R +E R +E R +E R QEE R
Sbjct: 778 HFRRPPQEHFRRPPQEHFRRSREEDFRHPPDEDFRGPPDEDFRHPPDEDFRSPQEEDFRC 837
Query: 242 TKEEICRQTQEEICRQTKEEICR 264
+E RQ EE R+ EE R
Sbjct: 838 PSDEDFRQLPEEDLREAPEEDPR 860
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 116/267 (43%), Gaps = 2/267 (0%)
Query: 4 EEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 63
EE R+ EE R+ EE R+ E+ R +EE R+ EE R+ EE R++ E
Sbjct: 584 EEDFRRPSEEDFRRPWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRSPTEDF 643
Query: 64 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 123
RQ EE RQ EE R EE R+ EE R+ EE R+ + R+ E+ R+
Sbjct: 644 RQLPEEDFRQPPEEDLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFRRPP 703
Query: 124 EEICRQTKEEICRQT-QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 182
EE R + EE RQ+ QE R +E R E R E R E R E
Sbjct: 704 EEDFRHSPEEDFRQSPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHF 763
Query: 183 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 242
R E R E R QE R +E R+++EE R +E R +E R
Sbjct: 764 RRPPPEHFRRPPPEHFRRPPQEHFRRPPQEHF-RRSREEDFRHPPDEDFRGPPDEDFRHP 822
Query: 243 KEEICRQTQEEICRQTKEEICRQTKEE 269
+E R QEE R +E RQ EE
Sbjct: 823 PDEDFRSPQEEDFRCPSDEDFRQLPEE 849
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 115/267 (43%), Gaps = 2/267 (0%)
Query: 4 EEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 63
EE R+ EE R+ E+ R +EE R+ EE R+ EE R++ E RQ EE
Sbjct: 592 EEDFRRPWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRSPTEDFRQLPEEDF 651
Query: 64 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 123
RQ EE R EE R+ EE R+ EE R+ + R+ E+ R+ EE R +
Sbjct: 652 RQPPEEDLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDDFRRPPEEDFRHSP 711
Query: 124 EEICRQTK-EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 182
EE RQ+ E R QE R E R E R E R E R E
Sbjct: 712 EEDFRQSPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHFRRPPPEHF 771
Query: 183 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 242
R E R +E R QE R+++EE R +E R +E R +E R
Sbjct: 772 RRPPPEHFRRPPQEHFRRPPQEHF-RRSREEDFRHPPDEDFRGPPDEDFRHPPDEDFRSP 830
Query: 243 KEEICRQTQEEICRQTKEEICRQTKEE 269
+EE R +E RQ EE R+ EE
Sbjct: 831 QEEDFRCPSDEDFRQLPEEDLREAPEE 857
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 112/259 (43%), Gaps = 2/259 (0%)
Query: 7 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 66
R+ +EE R+ EE R+ EE R+ E+ R +EE R+ EE R+ EE R++
Sbjct: 579 FRRPREEDFRRPSEEDFRRPWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFRRS 638
Query: 67 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 126
E RQ EE RQ EE R EE R+ EE R+ EE R+ + R+ E+
Sbjct: 639 PTEDFRQLPEEDFRQPPEEDLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPEDD 698
Query: 127 CRQTKEEICRQTQEEICRQTK-EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQ 185
R+ EE R + EE RQ+ E R QE R E R E R E R
Sbjct: 699 FRRPPEEDFRHSPEEDFRQSPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFRRP 758
Query: 186 TQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 245
E R E R E R +E R QE R+++EE R +E R +E
Sbjct: 759 PPEHFRRPPPEHFRRPPPEHFRRPPQEHFRRPPQEHF-RRSREEDFRHPPDEDFRGPPDE 817
Query: 246 ICRQTQEEICRQTKEEICR 264
R +E R +EE R
Sbjct: 818 DFRHPPDEDFRSPQEEDFR 836
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 96 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQ 155
R++ E+ R + E+ R EE ++EE R E+ + +QE+ RQ E+ RQ
Sbjct: 553 RRSPEDF-RHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQ-- 607
Query: 156 EEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 215
R EE R+ +E R++ +E RQ EE R+++EE R +E RQ +E
Sbjct: 608 ---LRSPWEEDFRRPSQEHFRRSYQEHIRQPPEEHFRRSREEDFRHVADEDFRQASDEDF 664
Query: 216 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 263
R +QE++ T E+ R + E++ R+ E+ R + R EE
Sbjct: 665 RTSQEDLRYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSPGEEFW 709
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 7 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 62
R + E+ R EE ++EE R E+ + ++E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQLRSPWEEDF 616
Query: 63 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 122
R +QE R +E I RQ EE R+++EE R +E RQ +E R +QE++ T
Sbjct: 617 RRPSQEHFRRSYQEHI-RQPPEEHFRRSREEDFRHVADEDFRQASDEDFRTSQEDLRYPT 675
Query: 123 KEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 159
E+ R + E++ R+ E+ R K R EE
Sbjct: 676 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSPGEEFW 709
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 32 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 91
R++ E+ R + E+ R EE ++EE R E+ + ++E+ RQ E+ RQ
Sbjct: 553 RRSPEDF-RHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQ-- 607
Query: 92 EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEIC 151
R EE R+ +E R++ +E RQ EE R+++EE R +E RQ +E
Sbjct: 608 ---LRSPWEEDFRRPSQEHFRRSYQEHIRQPPEEHFRRSREEDFRHVADEDFRQASDEDF 664
Query: 152 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 199
R +QE++ T E+ R + E++ R+ E+ R + R EE
Sbjct: 665 RTSQEDLRYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSPGEEFW 709
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 48 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 107
R++ E+ R + E+ R EE ++EE R E+ + ++E+ RQ E+ RQ
Sbjct: 553 RRSPEDF-RHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQ-- 607
Query: 108 EEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 167
R EE R+ +E R++ +E RQ EE R+++EE R +E RQ +E
Sbjct: 608 ---LRSPWEEDFRRPSQEHFRRSYQEHIRQPPEEHFRRSREEDFRHVADEDFRQASDEDF 664
Query: 168 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 215
R +QE++ T E+ R + E++ R+ E+ R + R EE
Sbjct: 665 RTSQEDLRYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSPGEEFW 709
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 120 RQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 179
R++ E+ R + E+ R EE ++EE R E+ + ++E+ RQ E+ RQ +
Sbjct: 553 RRSPEDF-RHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQLR 609
Query: 180 ----EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQ 235
E+ R +QE R +E I RQ EE R+++EE R +E RQ +E R +Q
Sbjct: 610 SPWEEDFRRPSQEHFRRSYQEHI-RQPPEEHFRRSREEDFRHVADEDFRQASDEDFRTSQ 668
Query: 236 EEICRQTKEEICRQTQEEICRQTKEEICRQTKE 268
E++ T E+ R + E++ R+ E+ R K
Sbjct: 669 EDLRYPTDEDFRRVSVEDL-REVPEKDLRLPKN 700
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 136 RQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK 195
R++ E+ R + E+ R EE ++EE R E+ + ++E+ RQ E+ RQ +
Sbjct: 553 RRSPEDF-RHSPED-YRHPWEEHTSHSREEDWRLPLED-WKWSQEDDFRQCHEKDRRQLR 609
Query: 196 ----EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQ 251
E+ R +QE R +E I RQ EE R+++EE R +E RQ +E R +Q
Sbjct: 610 SPWEEDFRRPSQEHFRRSYQEHI-RQPPEEHFRRSREEDFRHVADEDFRQASDEDFRTSQ 668
Query: 252 EEICRQTKEEICRQTKEEI 270
E++ T E+ R + E++
Sbjct: 669 EDLRYPTDEDFRRVSVEDL 687
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 2 AWEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 61
WEE R+ +E R++ +E RQ EE R+++EE R +E RQ +E R ++E+
Sbjct: 611 PWEEDFRRPSQEHFRRSYQEHIRQPPEEHFRRSREEDFRHVADEDFRQASDEDFRTSQED 670
Query: 62 ICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 103
+ T E+ R + E++ R+ E+ R K R EE
Sbjct: 671 LRYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSPGEEFW 709
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 2 AWEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEICRQTQEEICRQ 57
WEE ++EE R E+ +E+ RQ E+ RQ + E+ R +QE R
Sbjct: 569 PWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDFRRPSQEHFRRS 625
Query: 58 TKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEE 117
+E I R QE R+++EE R +E RQ +E R +QE++ T E+ R + E+
Sbjct: 626 YQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPTDEDFRRVSVED 684
Query: 118 ICRQTKEEICRQTKEEICRQTQEEIC 143
+ R+ E+ R K R + EE
Sbjct: 685 L-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 7 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 62
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 63 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 122
R +QE R +E I R QE R+++EE R +E RQ +E R +QE++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 123 KEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 159
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 39 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 94
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 95 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQT 154
R +QE R +E I R QE R+++EE R +E RQ +E R ++E++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 155 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 191
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 23 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 78
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 79 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQT 138
R +QE R +E I R QE R+++EE R +E RQ +E R ++E++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 139 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 175
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 127 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 182
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 183 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 242
R +QE R +E I R QE R+++EE R +E RQ +E R +QE++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 243 KEEICRQTQEEICRQTKEEICRQTKE 268
E+ R + E++ R+ E+ R K
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN 698
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 143 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 198
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 199 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 258
R +QE R +E I R QE R+++EE R +E RQ +E R +QE++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 259 KEEICRQTKEEI 270
E+ R + E++
Sbjct: 674 DEDFRRVSVEDL 685
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 55 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 114
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ R
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQ-----LRSP 609
Query: 115 QEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEI 174
EE R+ +E R++ +E R+ +E R+++EE R +E RQ +E R +QE++
Sbjct: 610 WEEDFRRPSQEHFRRSYQEHIRRPPQEHFRRSREEDFRHVADEDFRQASDEDFRISQEDL 669
Query: 175 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 215
T E+ R + E++ R+ E+ R + R + EE
Sbjct: 670 RYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 103 CRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQT----QEEI 158
R + E+ R EE ++EE R E+ QE+ RQ E+ RQ +E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 159 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 218
R ++E R QE I R +E R+++EE R +E RQ +E R ++E++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 219 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 255
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 79 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQT 138
R + E+ R EE ++EE R E+ QE+ RQ E+ RQ R
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQ-----LRSP 609
Query: 139 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 198
EE R+ +E R++ +E R+ +E R+++EE R +E RQ +E R ++E++
Sbjct: 610 WEEDFRRPSQEHFRRSYQEHIRRPPQEHFRRSREEDFRHVADEDFRQASDEDFRISQEDL 669
Query: 199 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 239
T E+ R + E++ R+ E+ R K R + EE
Sbjct: 670 RYPTDEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 71 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK----EEI 126
R + E+ R EE ++EE R E+ +E+ RQ E+ RQ + E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 127 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 186
R ++E R QE I R +E R+++EE R +E RQ +E R ++E++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 187 QEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC 223
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEFW 707
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 119 CRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT----QEEI 174
R + E+ R EE ++EE R E+ QE+ RQ E+ RQ +E+
Sbjct: 559 FRHSPED-YRHPWEEHTSHSREEDWRLPLED---WPQEDDFRQCHEKDHRQLRSPWEEDF 614
Query: 175 CRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 234
R ++E R QE I R +E R+++EE R +E RQ +E R ++E++ T
Sbjct: 615 RRPSQEHFRRSYQEHIRRPPQEHF-RRSREEDFRHVADEDFRQASDEDFRISQEDLRYPT 673
Query: 235 QEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEI 270
E+ R + E++ R+ E+ R K R + EE
Sbjct: 674 DEDFRRVSVEDL-REVPEKDLRLPKN--FRSSGEEF 706
>sp|Q95JY5|SAM15_MACFA Sterile alpha motif domain-containing protein 15 OS=Macaca
fascicularis GN=SAMD15 PE=2 SV=2
Length = 667
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 20/235 (8%)
Query: 26 TKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEE 85
T E QTQ + + E +T + + TK +I +TQ E + + E Q + E
Sbjct: 196 TGVEPPEQTQLDFPSEKPGESLEETDLQPPKMTKPDIPEETQRESTEKKRTEPPEQARPE 255
Query: 86 IC----RQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEI----CRQ 137
R++ EE + EE + E+ R+ EE + T E+ +TK ++ R+
Sbjct: 256 FPEKEPRKSSEEAGLEPPEETQPEVPGEMQRKATEE--KGT--ELPERTKPDLPDHKSRK 311
Query: 138 TQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 197
+ +E + EEI + EE R+ EE + E + ++ EEI R++ EE Q EE
Sbjct: 312 STDENVPEPLEEIKLEFPEEESRKPNEETILEQSEMMKPESPEEI-RKSNEEKNPQPPEE 370
Query: 198 ICRQTQEEICRQTKEEI-CRQTQE---EICRQTKEEICRQTQEEICRQTKEEICR 248
+EI + +E+ + T+E E+ +TK R+T E ++ + E +
Sbjct: 371 TGLVLPQEINPRVEEKTQTKPTEEKNLELPDETK---PRETHVEFPKEDRPEPIK 422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.126 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,782,869
Number of Sequences: 539616
Number of extensions: 4318184
Number of successful extensions: 53970
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 533
Number of HSP's that attempted gapping in prelim test: 29988
Number of HSP's gapped (non-prelim): 6954
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)