Query psy13644
Match_columns 270
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 16:34:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05672 MAP7: MAP7 (E-MAP-115 60.5 1.3E+02 0.0028 27.1 13.4 31 227-257 112-142 (171)
2 PF05672 MAP7: MAP7 (E-MAP-115 58.5 1.4E+02 0.003 26.8 13.4 31 211-241 112-142 (171)
3 KOG0163|consensus 34.1 3.2E+02 0.007 30.7 9.9 16 248-263 999-1014(1259)
4 KOG1029|consensus 19.3 1.4E+03 0.029 26.1 14.7 106 65-176 326-431 (1118)
5 KOG3054|consensus 17.8 9.4E+02 0.02 23.6 9.3 71 118-189 105-175 (299)
6 KOG1029|consensus 15.8 1.6E+03 0.035 25.5 14.3 104 89-192 326-431 (1118)
7 PF08017 Fibrinogen_BP: Fibrin 15.4 4E+02 0.0087 26.4 6.0 146 2-147 154-299 (393)
8 KOG3054|consensus 12.7 1.3E+03 0.028 22.7 8.5 67 154-221 109-175 (299)
9 PTZ00121 MAEBL; Provisional 9.5 3.1E+03 0.067 25.2 27.3 202 27-237 1111-1314(2084)
10 PTZ00121 MAEBL; Provisional 5.6 4.7E+03 0.1 23.8 29.2 218 5-228 1112-1333(2084)
No 1
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=60.52 E-value=1.3e+02 Score=27.06 Aligned_cols=31 Identities=39% Similarity=0.273 Sum_probs=14.5
Q ss_pred HHHHHHhhHHHHHHhhHHHHHHhhHHHHHHh
Q psy13644 227 KEEICRQTQEEICRQTKEEICRQTQEEICRQ 257 (270)
Q Consensus 227 kEE~~R~~~EE~~R~~kEE~aR~~~EE~~R~ 257 (270)
+++...+..++..+...+-.-.-.++++.|.
T Consensus 112 keeae~ka~EeAek~r~ErE~~~~q~eqERl 142 (171)
T PF05672_consen 112 KEEAEAKAREEAEKQRKERERIMQQEEQERL 142 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 2
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=58.47 E-value=1.4e+02 Score=26.83 Aligned_cols=31 Identities=39% Similarity=0.273 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHhhHHHHHHhhHHHHHHh
Q psy13644 211 KEEICRQTQEEICRQTKEEICRQTQEEICRQ 241 (270)
Q Consensus 211 kEE~~R~~~EE~~r~~kEE~~R~~~EE~~R~ 241 (270)
+++...+..++..+...+-.-....+++.|+
T Consensus 112 keeae~ka~EeAek~r~ErE~~~~q~eqERl 142 (171)
T PF05672_consen 112 KEEAEAKAREEAEKQRKERERIMQQEEQERL 142 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455444444444444444444443
No 3
>KOG0163|consensus
Probab=34.14 E-value=3.2e+02 Score=30.67 Aligned_cols=16 Identities=38% Similarity=0.248 Sum_probs=6.9
Q ss_pred HhhHHHHHHhhHHHHH
Q psy13644 248 RQTQEEICRQTKEEIC 263 (270)
Q Consensus 248 R~~~EE~~R~~kEE~~ 263 (270)
++.+.++.|++.+-.-
T Consensus 999 ~q~~~Eqer~D~~la~ 1014 (1259)
T KOG0163|consen 999 RQNQLEQERRDHELAL 1014 (1259)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3444444444444333
No 4
>KOG1029|consensus
Probab=19.28 E-value=1.4e+03 Score=26.08 Aligned_cols=106 Identities=26% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHHHHhHHHHHHhhhHHHhHhhHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHH
Q psy13644 65 QTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICR 144 (270)
Q Consensus 65 kak~EaerkaK~eae~kak~EaerkAkeEa~rkakeea~~~AkEeaerkAkEEa~rkAkEeaerkakEEaer~akeeaer 144 (270)
++..+-.|++-++..++-.++-+.+-.++.+++..+ ..+.+++++.+-..+-...-+-.+..+.+++-..+..-
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkere------rqEqErk~qlElekqLerQReiE~qrEEerkkeie~rE 399 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERE------RQEQERKAQLELEKQLERQREIERQREEERKKEIERRE 399 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHhHHHHHHhhHHHHHHhhHHHHHH
Q psy13644 145 QTKEEICRQTQEEICRQTKEEICRQTQEEICR 176 (270)
Q Consensus 145 kaKeE~er~akeE~~rk~kEE~~r~~kEE~~r 176 (270)
-++.|.+++.+.+=++-+..+---+.-.+.+.
T Consensus 400 aar~ElEkqRqlewErar~qem~~Qk~reqe~ 431 (1118)
T KOG1029|consen 400 AAREELEKQRQLEWERARRQEMLNQKNREQEW 431 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
No 5
>KOG3054|consensus
Probab=17.76 E-value=9.4e+02 Score=23.57 Aligned_cols=71 Identities=24% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHH
Q psy13644 118 ICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEE 189 (270)
Q Consensus 118 a~rkAkEeaerkakEEaer~akeeaerkaKeE~er~akeE~~rk~kEE~~r~~kEE~~rk~KEE~~r~~~EE 189 (270)
+...+|.++.+...-.-+..--....++.++--.--..--.+-..+++++.+. ++..|+++++.+++..++
T Consensus 105 kkK~aKleakqerr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~-ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 105 KKKEAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKE-EEKERKAKEEEARKEHEE 175 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
No 6
>KOG1029|consensus
Probab=15.79 E-value=1.6e+03 Score=25.49 Aligned_cols=104 Identities=26% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhHHHhHhhHHHHHHHHHHHHHHhhHHHHHHHhHH--HHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHH
Q psy13644 89 QTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKE--EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 166 (270)
Q Consensus 89 kAkeEa~rkakeea~~~AkEeaerkAkEEa~rkAkE--eaerkakEEaer~akeeaerkaKeE~er~akeE~~rk~kEE~ 166 (270)
++..+-.|++.++-.++-.++-.++-.++.+++-.+ +.++++..+-+.+....-+-..-.|.+++.-.+.--.++.|.
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~El 405 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREEL 405 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHhhHHHHHHhhHHHHHH
Q psy13644 167 CRQTQEEICRQTKEEICRQTQEEICR 192 (270)
Q Consensus 167 ~r~~kEE~~rk~KEE~~r~~~EE~~r 192 (270)
+++++.+=++-.--+---+.-.++..
T Consensus 406 EkqRqlewErar~qem~~Qk~reqe~ 431 (1118)
T KOG1029|consen 406 EKQRQLEWERARRQEMLNQKNREQEW 431 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
No 7
>PF08017 Fibrinogen_BP: Fibrinogen binding protein ; InterPro: IPR012969 This entry represents proteins that bind to fibrinogen. Fibrinogen is capable of binding to a wide number of endogenous proteins and cell receptors during haemostasis, including binding to platelets to promote their aggregation []. This entry represents the fibrinogen receptor FbsA (Q8GIU3 from SWISSPROT) from the pathogen Streptococcus agalactiae, which is responsible for causing endocarditis in humans. FbsA is considered an important virulence factor that is capable of binding fibrinogen, through which it elicits platelet aggregation and adherence to the extracellular matrix. This enables the bacteria to invade the pulmonary epithelium, which may be a prerequisite for infection []. More information about Fibrinogen can be found at Protein of the Month: Fibrinogen []. This entry also contains Eukaryotic translation initiation factor 4 gamma, which is a component of the protein complex eIF4F and is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome [].
Probab=15.38 E-value=4e+02 Score=26.38 Aligned_cols=146 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHhHHHHHHHhHHHHHHHhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHH
Q psy13644 2 AWEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQ 81 (270)
Q Consensus 2 aw~e~~~~ak~e~~r~aq~E~erkaKeEae~~Aq~Eae~kakeEae~kAk~Eaerkakeeae~kak~EaerkaK~eae~k 81 (270)
..-+++...+....-..+-....+.+-.+..+.+.....+.+-.+..+.+-.+.-+.+-.++.+.+-......+..+..+
T Consensus 154 sqge~~~r~qrd~e~ksqg~~~~r~q~dae~k~q~~v~~r~qr~~e~ksq~~v~~r~q~~ae~ksq~ev~~rsq~~a~~k 233 (393)
T PF08017_consen 154 SQGEALERRQRDAENKSQGNAEARRQRDAEQKAQGNVLERSQRNAESKSQGEVLARSQRDAEAKSQGEVEARSQREAEAK 233 (393)
T ss_pred cccchhhhhhhhhhhhhccCHHhhhhccccchhhcCHHHHhhcccccccccchhhHhhhhhhhhhccCHHHHhhhhhhhh
Q ss_pred hHHHHHHhhhHHHhHhhHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhH
Q psy13644 82 TQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTK 147 (270)
Q Consensus 82 ak~EaerkAkeEa~rkakeea~~~AkEeaerkAkEEa~rkAkEeaerkakEEaer~akeeaerkaK 147 (270)
.+..++.+++..+.-+.+-..+-...-.+.-+.+-.+.-+..-.+.-+..-.+..++...+.-+.+
T Consensus 234 sq~e~~ersq~~~~~ksq~ev~~k~qr~~~~ksq~n~~er~q~~ae~ksq~~~~e~~q~~~~~ks~ 299 (393)
T PF08017_consen 234 SQGEAEERSQRDAESKSQGEVLAKRQRDAESKSQGNALERRQRNAENKSQREALERRQKDAENKSQ 299 (393)
T ss_pred hhccHHHHHhhchhchhhhhHHHHHHHhhhhhhccChHhHhHhhHHhhhcccHHHHHHHHHHHHHH
No 8
>KOG3054|consensus
Probab=12.68 E-value=1.3e+03 Score=22.67 Aligned_cols=67 Identities=24% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHH
Q psy13644 154 TQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEE 221 (270)
Q Consensus 154 akeE~~rk~kEE~~r~~kEE~~rk~KEE~~r~~~EE~~r~~kEE~~R~~~EE~~R~~kEE~~R~~~EE 221 (270)
+|.++-+..+.-...-..+-..|+.++-..-...--..-+.+++...+. ++..|+.+++.+|+.-++
T Consensus 109 aKleakqerr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~-ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 109 AKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKE-EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
No 9
>PTZ00121 MAEBL; Provisional
Probab=9.46 E-value=3.1e+03 Score=25.18 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHHhHHHHHHhhhHHHhHhhHHHHHHHH
Q psy13644 27 KEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 106 (270)
Q Consensus 27 KeEae~~Aq~Eae~kakeEae~kAk~Eaerkakeeae~kak~EaerkaK~eae~kak~EaerkAkeEa~rkakeea~~~A 106 (270)
.+++......-........++.--..+..| ..+.-+++.......+....+.-...+..+++.++-..+....+....
T Consensus 1111 ~ee~r~~ee~~~r~e~arr~eeARrae~~R--r~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~R 1188 (2084)
T PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDAR--KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188 (2084)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhh
Q psy13644 107 KEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQT 186 (270)
Q Consensus 107 kEeaerkAkEEa~rkAkEeaerkakEEaer~akeeaerkaKeE~er~akeE~~rk~kEE~~r~~kEE~~rk~KEE~~r~~ 186 (270)
..+.-+.+.+..........+..+..+.-+++..+.... .....+..++..+++-+.-.+-......--...+-
T Consensus 1189 r~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~E------E~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eear~ 1262 (2084)
T PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE------AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARM 1262 (2084)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh--HHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHH
Q psy13644 187 QEEICRQT--KEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEE 237 (270)
Q Consensus 187 ~EE~~r~~--kEE~~R~~~EE~~R~~kEE~~R~~~EE~~r~~kEE~~R~~~EE 237 (270)
++.+.|.. +.+..|+ .++...-.-.-.+-..+-..+++..++..-+..+.
T Consensus 1263 a~~A~r~aa~k~Ee~Rr-Aee~~k~Ee~r~a~~~kk~ee~kkaee~~kk~eea 1314 (2084)
T PTZ00121 1263 AHFARRQAAIKAEEARK-ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314 (2084)
T ss_pred HHHHHHhHhhhhHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH
No 10
>PTZ00121 MAEBL; Provisional
Probab=5.56 E-value=4.7e+03 Score=23.81 Aligned_cols=218 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhHHHHHHHhHHHHHHHhHHHHHHHhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHHhHH
Q psy13644 5 EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQE 84 (270)
Q Consensus 5 e~~~~ak~e~~r~aq~E~erkaKeEae~~Aq~Eae~kakeEae~kAk~Eaerkakeeae~kak~EaerkaK~eae~kak~ 84 (270)
+..+.+.+..-|.-+..-+.-+....+.+ ..+--++.......-+....+.-...+..+++..+........++.....
T Consensus 1112 ee~r~~ee~~~r~e~arr~eeARrae~~R-r~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~ 1190 (2084)
T PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDAR-KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHhHhhHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHHHHHHHhHHHHHHhhHH
Q psy13644 85 EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKE 164 (270)
Q Consensus 85 EaerkAkeEa~rkakeea~~~AkEeaerkAkEEa~rkAkEeaerkakEEaer~akeeaerkaKeE~er~akeE~~rk~kE 164 (270)
+..+++.+........-.+..+..+.-+++.+..+...-..++...+-..+.+.-++...-- ...+-+.++.+-.
T Consensus 1191 EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~E-----E~Rk~Eear~a~~ 1265 (2084)
T PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE-----EIRKFEEARMAHF 1265 (2084)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHHHhhHHHHH----HhhHHHHHHhhHHHHHHhhHH
Q psy13644 165 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEIC----RQTKEEICRQTQEEICRQTKE 228 (270)
Q Consensus 165 E~~r~~kEE~~rk~KEE~~r~~~EE~~r~~kEE~~R~~~EE~~----R~~kEE~~R~~~EE~~r~~kE 228 (270)
-.-.-+......+..++.....-.-.+-..+-...+...++.. --.+-+.+++..++...+.-+
T Consensus 1266 A~r~aa~k~Ee~RrAee~~k~Ee~r~a~~~kk~ee~kkaee~~kk~eea~kAee~~kkae~~~kka~~ 1333 (2084)
T PTZ00121 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333 (2084)
T ss_pred HHHhHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHH
Done!