Query psy13644
Match_columns 270
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 16:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2h_A APS, adaptor protein wi 0.6 2.8E+03 0.095 15.1 1.1 8 2-9 6-13 (69)
2 3dkt_A Maritimacin; enzyme enc 0.6 4.1E+03 0.14 17.0 2.3 12 2-13 15-26 (265)
3 3im4_C Dual specificity A kina 0.5 2.3E+03 0.08 14.7 0.1 6 1-6 17-22 (45)
4 2knu_A E1_peptide, genome poly 0.3 4.1E+03 0.14 11.9 0.4 3 1-3 5-7 (29)
5 3umh_A Amyloid beta A4 protein 0.3 4.1E+03 0.14 16.9 0.4 9 3-11 45-53 (211)
6 3k66_A Beta-amyloid-like prote 0.3 6E+03 0.2 16.1 1.6 10 3-12 40-49 (239)
7 3pmr_A Amyloid-like protein 1; 0.3 5.1E+03 0.17 16.4 0.5 9 3-11 52-60 (219)
8 1v9d_A Diaphanous protein homo 0.3 1.1E+04 0.38 13.5 3.4 31 195-225 310-340 (340)
9 3viq_A SWI5-dependent recombin 0.3 8.2E+03 0.28 13.2 1.7 11 3-13 48-58 (122)
10 2v8f_A Profilin-2, profilin II 0.3 5E+03 0.17 14.5 0.2 4 1-4 1-5 (140)
No 1
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=0.62 E-value=2.8e+03 Score=15.14 Aligned_cols=8 Identities=25% Similarity=1.136 Sum_probs=4.5
Q ss_pred chHHHHHH
Q psy13644 2 AWEEICRQ 9 (270)
Q Consensus 2 aw~e~~~~ 9 (270)
.|.+.|..
T Consensus 6 ~W~EFCE~ 13 (69)
T 1q2h_A 6 DWRQFCEL 13 (69)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 36666653
No 2
>3dkt_A Maritimacin; enzyme encapsulation, nanocompartment, oxidative stress, FER like protein, HK97-fold, antibiotic; 3.10A {Thermotoga maritima}
Probab=0.59 E-value=4.1e+03 Score=16.95 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=6.8
Q ss_pred chHHHHHHHHHH
Q psy13644 2 AWEEICRQTKEE 13 (270)
Q Consensus 2 aw~e~~~~ak~e 13 (270)
+|.+|+..+.+-
T Consensus 15 ~W~~Id~~a~~~ 26 (265)
T 3dkt_A 15 QWQEIDNRAREI 26 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466666655543
No 3
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=0.50 E-value=2.3e+03 Score=14.65 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=3.0
Q ss_pred CchHHH
Q psy13644 1 MAWEEI 6 (270)
Q Consensus 1 ~aw~e~ 6 (270)
|||+=|
T Consensus 17 MAWqIA 22 (45)
T 3im4_C 17 LAWKIA 22 (45)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556543
No 4
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=0.33 E-value=4.1e+03 Score=11.93 Aligned_cols=3 Identities=100% Similarity=2.317 Sum_probs=0.0
Q ss_pred Cch
Q psy13644 1 MAW 3 (270)
Q Consensus 1 ~aw 3 (270)
|||
T Consensus 5 maw 7 (29)
T 2knu_A 5 MAW 7 (29)
T ss_dssp TGG
T ss_pred hHH
No 5
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=0.33 E-value=4.1e+03 Score=16.92 Aligned_cols=9 Identities=67% Similarity=1.066 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q psy13644 3 WEEICRQTK 11 (270)
Q Consensus 3 w~e~~~~ak 11 (270)
|.+++.+++
T Consensus 45 W~eae~q~k 53 (211)
T 3umh_A 45 WEEAERQAK 53 (211)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
No 6
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=0.33 E-value=6e+03 Score=16.14 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=0.0
Q ss_pred hHHHHHHHHH
Q psy13644 3 WEEICRQTKE 12 (270)
Q Consensus 3 w~e~~~~ak~ 12 (270)
|.+++.+++.
T Consensus 40 W~Eae~q~k~ 49 (239)
T 3k66_A 40 WGDLETRYNE 49 (239)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
No 7
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=0.28 E-value=5.1e+03 Score=16.36 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q psy13644 3 WEEICRQTK 11 (270)
Q Consensus 3 w~e~~~~ak 11 (270)
|.+++.|++
T Consensus 52 W~eae~q~k 60 (219)
T 3pmr_A 52 WAMADNQSK 60 (219)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
No 8
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=0.27 E-value=1.1e+04 Score=13.53 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhhHHHHHHhhHHHHHHh
Q psy13644 195 KEEICRQTQEEICRQTKEEICRQTQEEICRQ 225 (270)
Q Consensus 195 kEE~~R~~~EE~~R~~kEE~~R~~~EE~~r~ 225 (270)
++-..|...++..++.+.......++-.+++
T Consensus 310 ~en~~r~e~eek~~~~~~~~e~~~~~~~~~~ 340 (340)
T 1v9d_A 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 9
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=0.26 E-value=8.2e+03 Score=13.17 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH
Q psy13644 3 WEEICRQTKEE 13 (270)
Q Consensus 3 w~e~~~~ak~e 13 (270)
|..+|+.+-.+
T Consensus 48 Wr~asq~aaee 58 (122)
T 3viq_A 48 WKNAAQQAAEV 58 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 10
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=0.25 E-value=5e+03 Score=14.47 Aligned_cols=4 Identities=75% Similarity=1.880 Sum_probs=0.0
Q ss_pred Cc-hH
Q psy13644 1 MA-WE 4 (270)
Q Consensus 1 ~a-w~ 4 (270)
|. |+
T Consensus 1 MS~Wq 5 (140)
T 2v8f_A 1 MAGWQ 5 (140)
T ss_dssp -CTTH
T ss_pred CchHH
Done!