RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13644
(270 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.4 bits (79), Expect = 0.043
Identities = 45/235 (19%), Positives = 93/235 (39%), Gaps = 14/235 (5%)
Query: 29 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICR 88
+ + T++E Q K+E ++T+E + E + + + K + + Q E
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 89 QTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKEEICRQTQEEICRQTKE 148
+ E R ++ EEI + + R +EE Q + ++ Q+++ +
Sbjct: 908 YAEAEEMRVRLAAKKQE-LEEILHEMEA---RIEEEEERSQQLQAEKKKMQQQMLDLEE- 962
Query: 149 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICR 208
+ +EE RQ + +I + E+ +++ + TKE R+ EE
Sbjct: 963 ---QLEEEEAARQKLQLEKVTADGKI--KKMEDDILIMEDQNNKLTKE---RKLLEERVS 1014
Query: 209 QTKEEICRQTQE-EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 262
+ + ++ + + K + E R KEE RQ E+I R+ + E
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 33.7 bits (77), Expect = 0.071
Identities = 44/235 (18%), Positives = 93/235 (39%), Gaps = 14/235 (5%)
Query: 13 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICR 72
+ + T++E Q K+E ++T+E + E + + + K + + Q E
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 73 QTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTKE 132
+ E R ++ EEI + + R +EE Q + ++ ++++ +
Sbjct: 908 YAEAEEMRVRLAAKKQE-LEEILHEMEA---RIEEEEERSQQLQAEKKKMQQQMLDLEE- 962
Query: 133 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICR 192
+ +EE RQ + +I + E+ +++ + TKE R+ EE
Sbjct: 963 ---QLEEEEAARQKLQLEKVTADGKI--KKMEDDILIMEDQNNKLTKE---RKLLEERVS 1014
Query: 193 QTKEEICRQTQE-EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 246
+ + ++ + + K + E R KEE RQ E+I R+ + E
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 31.0 bits (70), Expect = 0.44
Identities = 35/212 (16%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 61 EICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICR 120
+ + T++E Q K+E ++T+E RQ K E + E+ Q EE QE++
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKE---RQQKAEAELKELEQKHTQLCEE-KNLLQEKLQA 903
Query: 121 QTKEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTK- 179
+T+ + ++E+ E R +EE Q + ++ Q+++ +
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 180 ---EEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQE 236
EE RQ + +I ++ +++I + + ++ + ++ E
Sbjct: 964 LEEEEAARQKLQLEKVTADGKI-KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 237 EICRQTKEEICRQTQEEICRQTKEEICRQTKE 268
E + + E + + + + ++ K
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Score = 29.4 bits (66), Expect = 1.4
Identities = 43/256 (16%), Positives = 100/256 (39%), Gaps = 10/256 (3%)
Query: 8 RQTKEEICRQTQEEICRQTKEE---ICRQTQEEICRQTKEEICRQTQEEICRQTKEEICR 64
RQ K E + E+ Q EE + + Q E + E R ++ EEI
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE-LEEILH 930
Query: 65 QTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKE 124
+ + I + + Q +++ +Q ++ Q +EE + K ++ + T + ++ ++
Sbjct: 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990
Query: 125 EICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICR 184
+I + + ++ + ++ EE + K + + + + E R
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEE---EEKAKNLTKLKNKHESMISELEVR 1047
Query: 185 QTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKE 244
+EE RQ E+I R+ + E E+I + + K ++ ++ +E +
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGE-SSDLHEQI--AELQAQIAELKAQLAKKEEELQAALARL 1104
Query: 245 EICRQTQEEICRQTKE 260
E + ++ +E
Sbjct: 1105 EDETSQKNNALKKIRE 1120
Score = 28.3 bits (63), Expect = 3.1
Identities = 43/261 (16%), Positives = 97/261 (37%), Gaps = 9/261 (3%)
Query: 3 WEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEI 62
+ E + + +Q EEI + + I + + Q +++ +Q ++
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 63 CRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQT 122
Q +EE + K ++ + T + ++ +++I +++ + TKE R+ EE
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDI-LIMEDQNNKLTKE---RKLLEERVSDL 1016
Query: 123 KEEICRQT-KEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEE 181
+ + K + + + + E R +EE RQ E+I R+ + E E+
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE-SSDLHEQ 1075
Query: 182 ICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQ 241
I + + + +EE+ +Q+ + E+ +
Sbjct: 1076 IAELQAQ---IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 242 TKEEICRQTQEEICRQTKEEI 262
E+ R E+ R EE+
Sbjct: 1133 ESEKAARNKAEKQKRDLSEEL 1153
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 27.0 bits (58), Expect = 9.0
Identities = 14/206 (6%), Positives = 59/206 (28%), Gaps = 1/206 (0%)
Query: 8 RQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQ 67
+ ++ I Q + + + + ++ + + R +
Sbjct: 611 KSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKR 670
Query: 68 EEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEIC 127
+ R ++ ++ + ++E + QE++ E I
Sbjct: 671 PKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELIN 730
Query: 128 RQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQEEICRQTKEEICRQTQ 187
+ + Q ++ + + + +E++ R ++++ T + + + +
Sbjct: 731 SKISTFLRDQM-DQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEH 789
Query: 188 EEICRQTKEEICRQTQEEICRQTKEE 213
+ R + + +
Sbjct: 790 NVGFDMEVPKKLRTSGKYAETVKDND 815
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.126 0.372
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,963,870
Number of extensions: 243132
Number of successful extensions: 1513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 114
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)