BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13645
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL--CSRIKIQLRDNDPVN-NTV 168
DP V V F KT N NPVWNE + F PL S + I ++D + + N +
Sbjct: 28 DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKL 87
Query: 169 IGTHYIDLKNISNDGDKGKDY 189
IGT + LK+++ D + Y
Sbjct: 88 IGTATVALKDLTGDQSRSLPY 108
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 111 VDPYVQVSFAGLTG--------KTSVKKNSYNPVWNEQ-IIFSEMFPPLCSRIKIQLRDN 161
V YV+V GL G K S NS NPVW E+ +F ++ P + +++ + +
Sbjct: 695 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 754
Query: 162 D---------PVNNTVIGTHYIDLKNISN 181
P+N G H++ L + SN
Sbjct: 755 GNKFLGHRIIPINALNSGYHHLCLHSESN 783
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 69 VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
P +R A ++ +RA+ L G+ D Y++V F G +T V
Sbjct: 387 CPRQRGLAHLVVSNFRAEHL---------------WGDYTTATDAYLKVFFGGQEFRTGV 431
Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDND 162
N+ NP W +++ F + +++Q+ D D
Sbjct: 432 VWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD 465
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 95 LVANVKKAFTGETKDLV---DPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIF 143
L + KA + DL DPYV+ S KTS+KKN+ NP +NE ++F
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK---TSVKKNSY 133
+ ++RI +A LP +S+ DPYV++ K T V + +
Sbjct: 21 QLVVRILQALDLPAKDSN--------------GFSDPYVKIYLLPDRKKKFQTKVHRKTL 66
Query: 134 NPVWNEQIIFSEMFPPLCSR 153
NP++NE FS L R
Sbjct: 67 NPIFNETFQFSVPLAELAQR 86
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 95 LVANVKKAFTGETKDLV---DPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIF 143
L + KA + DL DPYV+ S KTS+KKN+ NP +NE ++F
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK---TSVKKNSY 133
+ ++RI +A LP +S+ DPYV++ K T V + +
Sbjct: 22 QLVVRILQALDLPAKDSN--------------GFSDPYVKIYLLPDRKKKFQTKVHRKTL 67
Query: 134 NPVWNEQIIFSEMFPPLCSR 153
NP++NE FS L R
Sbjct: 68 NPIFNETFQFSVPLAELAQR 87
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 81 RIYRADGLPKMNSSLVANVKKAFTGETKDLV---DPYVQVSF---AGLTGKTSVKKNSYN 134
RI + G S+L + KA KD DP+V++ +T VK+ + N
Sbjct: 14 RIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 73
Query: 135 PVWNEQIIFSEMFP--PLCSRI-KIQLRD------NDPVNNTVIGTHYIDLKNI 179
P WNE +F E FP + RI +Q+ D NDP+ I + +DL +
Sbjct: 74 PHWNETFLF-EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQM 126
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 114 YVQVSFAGLTGKTSVK-------KNSYNPVWNEQII-FSEMFPPLCSRIKIQLRDND--- 162
YV+V GL T K NS+NPVW+E+ F ++ P + ++I +
Sbjct: 747 YVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKF 806
Query: 163 ------PVNNTVIGTHYIDLKNISN 181
PV+ G HY+ L+N +N
Sbjct: 807 VGHRILPVSAIRSGYHYVCLRNEAN 831
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 114 YVQVSFAGLTGKT-------SVKKNSYNPVWNEQII-FSEMFPPLCSRIKIQLRDND--- 162
YV+V GL T + + NS+NPVW+E+ F ++ P + ++I +
Sbjct: 745 YVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKF 804
Query: 163 ------PVNNTVIGTHYIDLKNISN 181
PV+ G HY+ L+N +N
Sbjct: 805 VGHRILPVSAIRSGYHYVCLRNEAN 829
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVK--KNSYNPV 136
I RA GL M+S+ L DPYV++ A + K K +N+ NPV
Sbjct: 33 IIRAKGLKPMDSN--------------GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 78
Query: 137 WNEQIIFSEMFPPLCSR--IKIQLRDNDPV-NNTVIGTHYIDLKNI 179
WNE + + + R ++I + D D +N IG LK +
Sbjct: 79 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVK--KNSYNPV 136
I RA GL M+S+ L DPYV++ A + K K +N+ NPV
Sbjct: 35 IIRAKGLKPMDSN--------------GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80
Query: 137 WNEQIIFSEMFPPLCSR--IKIQLRDNDPV-NNTVIGTHYIDLKNI 179
WNE + + + R ++I + D D +N IG LK +
Sbjct: 81 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 112 DPYVQVSF----AGLTGKTSVK--KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDND 162
DPYV+V+ +G+ K K S NP WNE+I+F + P RI ++ D +
Sbjct: 30 DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL--PQRHRILFEVFDEN 84
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLV---DPYVQVSFAGLTGKTSVKKNSYN 134
F ++ DG K ++ + V A + KD DPYV V +T + N
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 135 PVWNEQIIFSEMFPPLCSRIKIQLRDND 162
PVW E F RIK+++ D D
Sbjct: 62 PVWEENFHFE--CHNSSDRIKVRVLDED 87
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 71 LERQHA-RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT----GK 125
+E Q++ +F + + RA V K G+ D DPYV++ F T +
Sbjct: 12 VEHQYSHKFTVVVLRA-----------TKVTKGAFGDMLDTPDPYVEL-FISTTPDSRKR 59
Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGT 171
T N NPVWNE F + P + ++I L D + V + +GT
Sbjct: 60 TRHFNNDINPVWNETFEFI-LDPNQENVLEITLMDANYVMDETLGT 104
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 110 LVDPYVQVSFA----GLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDND 162
L DPYV++ LT KT K + NPVWNE +F+ + R+ +++ D D
Sbjct: 40 LSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWD 97
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 67 EGVPLERQHA-RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-- 123
+ + +E Q++ +F + + RA V K G+ D DPYV++ F T
Sbjct: 8 QHIIVEHQYSHKFTVVVLRA-----------TKVTKGAFGDMLDTPDPYVEL-FISTTPD 55
Query: 124 --GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGT 171
+T N NPVWNE F + P + ++I L D + V + +GT
Sbjct: 56 SRKRTRHFNNDINPVWNETFEFI-LDPNQENVLEITLMDANYVMDETLGT 104
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 112 DPYVQVSF-----AGLTG-KTSVKKNSYNPVWNEQIIF 143
DPYV+V+ LT +T K S NP WNE+I+F
Sbjct: 42 DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWN 138
+RI A GL SL ++ K + L+DPY+ VS + G+TS K+ + P +N
Sbjct: 33 VRIGEAVGLQPTRWSLRHSLFK----KGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 139 EQI 141
E+
Sbjct: 89 EEF 91
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 99 VKKAFTGETKDLVDPYVQVSFAGLT----GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
V K G+ D DPYV++ F T +T N NPVWNE F + P + +
Sbjct: 15 VTKGAFGDMLDTPDPYVEL-FISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQENVL 72
Query: 155 KIQLRDNDPVNNTVIGT 171
+I L D + V + +GT
Sbjct: 73 EITLMDANYVMDETLGT 89
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 45 TVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIY 83
T++ P++S ++ E L LP+ P+E RF+ +IY
Sbjct: 40 TIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 78
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 45 TVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIY 83
T++ P++S ++ E L LP+ P+E RF+ +IY
Sbjct: 38 TIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 76
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 45 TVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIY 83
T++ P++S ++ E L LP+ P+E RF+ +IY
Sbjct: 38 TIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 76
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 45 TVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIY 83
T++ P++S ++ E L LP+ P+E RF+ +IY
Sbjct: 38 TIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 76
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 90 KMNSSLVANVKK----AFTGETKDLVDPYVQV------SFAGLTGKTSVKKNSYNPVWNE 139
+ SLV +VK+ A+ E K +PYV+ S G KTS+K+++ NP+++E
Sbjct: 20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQG-KRKTSIKRDTVNPLYDE 78
Query: 140 QIIF 143
+ +
Sbjct: 79 TLRY 82
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp And
Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase Which Catalyzes
Non-Glycosidic C-N Coupling In Validamycin A
Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase Which Catalyzes
Non-Glycosidic C-N Coupling In Validamycin A
Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The
Pseudo-Glycosyltransferase, In Complex With Gdp
Length = 497
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 17 ALLTDPDDIAGGPKGYLKCDIS---VIGKGDTVKIPQKSEKD-EDDIEANLLLPEGVPLE 72
A+ D D G P+ +L + V + + I + D EDD A+ L P+GV +E
Sbjct: 14 AITYDTDPATGEPRAWLAPGGTGNVVAEQAGVLNISWIASADSEDDRRASALNPDGVTME 73
Query: 73 RQHAR-FIIRIYRAD 86
R ++R+ R D
Sbjct: 74 LHSGREILVRLIRHD 88
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 17 ALLTDPDDIAGGPKGYLKCDIS---VIGKGDTVKIPQKSEKD-EDDIEANLLLPEGVPLE 72
A+ D D G P+ +L + V + + I + D EDD A+ L P+GV +E
Sbjct: 13 AITYDTDPATGEPRAWLAPGGTGNVVAEQAGVLNISWIASADSEDDRRASALNPDGVTME 72
Query: 73 RQHAR-FIIRIYRAD 86
R ++R+ R D
Sbjct: 73 LHSGREILVRLIRHD 87
>pdb|1UCU|A Chain A, R-type Straight Flagellar Filament Made Of Full-length
Flagellin
Length = 494
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 87 GLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSY 133
GLP + V NV+ A DL + ++ AG+TG SV K SY
Sbjct: 269 GLPATATEDVKNVQVA----NADLTEAKAALTAAGVTGTASVVKMSY 311
>pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length
Flagellin
Length = 494
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 87 GLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSY 133
GLP + V NV+ A DL + ++ AG+TG SV K SY
Sbjct: 269 GLPATATEDVKNVQVA----NADLTEAKAALTAAGVTGTASVVKMSY 311
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 87 GLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSY 133
GLP + V NV+ A DL + ++ AG+TG SV K SY
Sbjct: 217 GLPATATEDVKNVQVA----NADLTEAKAALTAAGVTGTASVVKMSY 259
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 95 LVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKNSYNPVWNEQIIFSEMFPP 149
+V + K + L DPYV++ + KT K+S NP WNE F
Sbjct: 177 VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD 236
Query: 150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
R+ +++ D D + N +G+ + + G G
Sbjct: 237 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 274
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 112 DPYVQVSFAGLTGK---TSVKKNSYNPVWNEQIIFSEMFPPLCSR 153
DPYV+V K T V + + NPV+NEQ F + L +
Sbjct: 41 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK 85
>pdb|2HBV|A Chain A, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBV|B Chain B, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBX|A Chain A, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
pdb|2HBX|B Chain B, Crystal Structure Of
Alpha-Amino-Beta-Carboxymuconate-Epsilon-
Semialdehyde-Decarboxylase (Acmsd)
Length = 334
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 113 PYVQVSFAGLTGKTSVKKNSYNPV----WNEQIIFSEM 146
P++QVS G TG + KN++ PV W+ EM
Sbjct: 30 PWLQVSAKGDTGSIMMGKNNFRPVYQALWDPAFRIEEM 67
>pdb|4EPK|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4EPK|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
Length = 334
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 113 PYVQVSFAGLTGKTSVKKNSYNPV----WNEQIIFSEM 146
P++QVS G TG + KN++ PV W+ EM
Sbjct: 30 PWLQVSAKGDTGSIMMGKNNFRPVYQALWDPAFRIEEM 67
>pdb|4ERA|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERA|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERG|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERG|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERI|A Chain A, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
pdb|4ERI|B Chain B, Evidence For A Dual Role Of An Active Site Histidine In
Alpha-Amino- Beta-Carboxymuconate-Epsilon-Semialdehyde
Decarboxylase
Length = 334
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 113 PYVQVSFAGLTGKTSVKKNSYNPV----WNEQIIFSEM 146
P++QVS G TG + KN++ PV W+ EM
Sbjct: 30 PWLQVSAKGDTGSIMMGKNNFRPVYQALWDPAFRIEEM 67
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 95 LVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKNSYNPVWNEQIIFSEMFPP 149
+V + K + L DPYV++ + KT K S NP WNE F
Sbjct: 36 VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95
Query: 150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
R+ +++ D D + N +G+ + + G G
Sbjct: 96 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 112 DPYVQVSFAGLTGK---TSVKKNSYNPVWNEQIIF 143
DPYV+V K T V + + NPV+NEQ F
Sbjct: 39 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 73
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 112 DPYVQVSFAGLTGK---TSVKKNSYNPVWNEQIIF 143
DPYV+V K T V + + NPV+NEQ F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 112 DPYVQVSFAGLTGK---TSVKKNSYNPVWNEQIIF 143
DPYV+V K T V + + NPV+NEQ F
Sbjct: 64 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 112 DPYVQVSFAGLTGK---TSVKKNSYNPVWNEQIIF 143
DPYV+V K T V + + NPV+NEQ F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 51 KSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPK 90
K E+ E I+ LL + P+ER ++R+ DGL +
Sbjct: 274 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAE 313
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 51 KSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPK 90
K E+ E I+ LL + P+ER ++R+ DGL +
Sbjct: 282 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAE 321
>pdb|2GTT|A Chain A, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|B Chain B, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|C Chain C, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|D Chain D, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|E Chain E, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|F Chain F, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|G Chain G, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|H Chain H, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|I Chain I, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|J Chain J, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|K Chain K, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|L Chain L, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|M Chain M, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|N Chain N, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|O Chain O, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|P Chain P, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|Q Chain Q, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|R Chain R, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|S Chain S, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|T Chain T, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|U Chain U, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|V Chain V, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
Length = 450
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 21 DPDDIAG------------GPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
DPDD+ P+ + I + KGD + E D+E N L G
Sbjct: 66 DPDDVCSYLAAAMQFFEGTCPEDWTSYGIVIARKGDKITPGSLVEIKRTDVEGNWALTGG 125
Query: 69 VPLER-----QHARFI---IRIYRADGLPKMNSSLVANVKKAFTGETKDLVD--PYVQV 117
+ L R +HA + + +YR L K++ N K + + + P+V++
Sbjct: 126 MELTRDPTVPEHASLVGLLLSLYR---LSKISGQNTGNYKTNIADRIEQIFETAPFVKI 181
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 35 CDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSS 94
CD++ + K T K P + +IE+ L EG +YR G S
Sbjct: 272 CDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEG-------------LYRVSGF----SD 314
Query: 95 LVANVKKAF--TGETKDL 110
L+ +VK AF GE D+
Sbjct: 315 LIEDVKMAFDRDGEKADI 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,552,210
Number of Sequences: 62578
Number of extensions: 279111
Number of successful extensions: 665
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 62
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)