Query psy13645
Match_columns 191
No_of_seqs 184 out of 1468
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:35:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08151 FerI: FerI (NUC094) d 99.9 1.3E-27 2.9E-32 151.1 6.1 69 1-69 3-72 (72)
2 cd04018 C2C_Ferlin C2 domain t 99.9 7.8E-25 1.7E-29 159.9 13.0 115 77-191 1-116 (151)
3 cd04039 C2_PSD C2 domain prese 99.8 8.2E-20 1.8E-24 126.6 12.4 98 76-183 1-99 (108)
4 KOG1030|consensus 99.8 3.4E-20 7.4E-25 134.5 9.4 95 74-184 4-99 (168)
5 cd08677 C2A_Synaptotagmin-13 C 99.8 1E-19 2.2E-24 126.9 10.6 97 74-187 12-115 (118)
6 cd08395 C2C_Munc13 C2 domain t 99.8 1.3E-19 2.8E-24 127.5 11.2 98 77-189 1-109 (120)
7 cd08688 C2_KIAA0528-like C2 do 99.8 1.1E-19 2.3E-24 126.4 10.3 101 78-191 1-108 (110)
8 cd04016 C2_Tollip C2 domain pr 99.8 4.9E-19 1.1E-23 124.8 13.1 97 76-189 2-102 (121)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 2E-19 4.3E-24 127.6 11.0 97 77-189 1-108 (126)
10 cd04015 C2_plant_PLD C2 domain 99.8 7.4E-19 1.6E-23 129.7 13.7 113 75-189 6-136 (158)
11 cd08381 C2B_PI3K_class_II C2 d 99.8 2.8E-19 6.2E-24 126.5 10.5 100 75-189 12-120 (122)
12 cd08682 C2_Rab11-FIP_classI C2 99.8 4.3E-19 9.2E-24 126.2 10.9 98 78-189 1-106 (126)
13 cd04032 C2_Perforin C2 domain 99.8 1.3E-18 2.9E-23 123.6 12.6 104 64-182 16-120 (127)
14 cd04041 C2A_fungal C2 domain f 99.8 7.6E-19 1.7E-23 122.3 10.6 98 76-189 1-105 (111)
15 cd04029 C2A_SLP-4_5 C2 domain 99.8 8.3E-19 1.8E-23 124.6 10.4 104 74-190 13-124 (125)
16 cd04050 C2B_Synaptotagmin-like 99.8 1.5E-18 3.3E-23 119.6 10.6 95 78-189 2-99 (105)
17 cd08685 C2_RGS-like C2 domain 99.8 9.6E-19 2.1E-23 123.3 9.6 101 74-189 10-118 (119)
18 cd04031 C2A_RIM1alpha C2 domai 99.8 1.1E-18 2.5E-23 123.6 10.1 102 74-189 14-123 (125)
19 cd08394 C2A_Munc13 C2 domain f 99.8 3.8E-18 8.3E-23 120.2 12.0 94 76-189 2-98 (127)
20 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.6E-18 7.8E-23 120.9 11.9 98 77-189 1-100 (123)
21 cd08681 C2_fungal_Inn1p-like C 99.8 2.9E-18 6.3E-23 120.4 11.0 99 76-189 1-101 (118)
22 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.8E-18 4E-23 122.9 9.9 102 75-189 14-123 (125)
23 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.9E-18 6.3E-23 121.1 10.9 97 77-189 1-100 (121)
24 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.4E-18 7.3E-23 125.1 11.5 99 77-190 1-106 (150)
25 cd04028 C2B_RIM1alpha C2 domai 99.8 4.7E-18 1E-22 123.4 11.9 100 75-189 28-135 (146)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.5E-18 7.7E-23 121.7 10.3 99 77-189 1-105 (127)
27 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.2E-18 1.1E-22 118.8 10.8 97 78-189 2-100 (116)
28 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.8E-18 8.3E-23 120.9 10.0 102 74-189 14-121 (124)
29 cd08375 C2_Intersectin C2 doma 99.8 1.1E-17 2.5E-22 120.4 12.4 93 74-181 13-106 (136)
30 cd04009 C2B_Munc13-like C2 dom 99.8 6.1E-18 1.3E-22 121.4 11.0 101 75-189 15-130 (133)
31 cd04011 C2B_Ferlin C2 domain s 99.8 6.3E-18 1.4E-22 117.6 10.5 98 74-189 2-107 (111)
32 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.8E-18 2.1E-22 118.5 11.6 97 78-189 2-101 (121)
33 cd08392 C2A_SLP-3 C2 domain fi 99.8 6.5E-18 1.4E-22 120.5 10.4 104 74-190 13-127 (128)
34 cd04036 C2_cPLA2 C2 domain pre 99.8 6.5E-18 1.4E-22 118.9 10.0 92 78-184 2-96 (119)
35 cd04038 C2_ArfGAP C2 domain pr 99.8 1.6E-17 3.4E-22 120.7 12.0 90 76-182 2-92 (145)
36 cd08692 C2B_Tac2-N C2 domain s 99.8 4.7E-18 1E-22 121.2 9.0 100 74-187 12-118 (135)
37 cd08680 C2_Kibra C2 domain fou 99.8 1.2E-17 2.6E-22 118.3 10.7 102 74-189 12-123 (124)
38 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 4.7E-17 1E-21 120.5 14.3 119 30-182 1-127 (162)
39 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.3E-17 5E-22 117.3 12.1 97 74-189 2-101 (126)
40 cd04010 C2B_RasA3 C2 domain se 99.7 1.5E-17 3.3E-22 121.2 10.9 98 77-190 1-120 (148)
41 cd08388 C2A_Synaptotagmin-4-11 99.7 1.1E-17 2.3E-22 119.4 9.7 103 74-189 14-125 (128)
42 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.5E-17 3.3E-22 117.5 10.1 87 77-182 1-87 (121)
43 cd04049 C2_putative_Elicitor-r 99.7 4.2E-17 9.1E-22 115.6 12.4 100 76-189 1-105 (124)
44 KOG0696|consensus 99.7 1.4E-18 3E-23 142.2 5.3 100 75-188 179-284 (683)
45 cd04030 C2C_KIAA1228 C2 domain 99.7 1.9E-17 4.1E-22 117.7 10.4 101 75-189 15-125 (127)
46 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.7E-17 5.9E-22 115.8 11.1 104 77-189 2-106 (121)
47 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.2E-17 4.7E-22 117.0 10.5 102 74-189 14-121 (124)
48 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-17 5.6E-22 116.3 10.4 103 74-189 12-122 (123)
49 cd04045 C2C_Tricalbin-like C2 99.7 6.6E-17 1.4E-21 114.1 11.8 97 76-188 1-99 (120)
50 cd04046 C2_Calpain C2 domain p 99.7 9.6E-17 2.1E-21 114.1 12.7 90 75-180 2-91 (126)
51 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.2E-17 1.1E-21 115.2 11.1 103 74-190 14-123 (125)
52 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 7.6E-17 1.7E-21 113.9 11.9 96 78-189 2-101 (121)
53 cd08377 C2C_MCTP_PRT C2 domain 99.7 8.6E-17 1.9E-21 113.0 11.9 97 76-189 1-98 (119)
54 cd08676 C2A_Munc13-like C2 dom 99.7 7.4E-17 1.6E-21 118.1 11.5 100 73-190 25-153 (153)
55 cd04026 C2_PKC_alpha_gamma C2 99.7 6.2E-17 1.3E-21 115.8 10.7 101 76-190 13-119 (131)
56 cd04024 C2A_Synaptotagmin-like 99.7 7.2E-17 1.6E-21 114.7 10.8 93 76-181 1-94 (128)
57 cd08678 C2_C21orf25-like C2 do 99.7 8E-17 1.7E-21 114.5 11.0 93 78-188 1-97 (126)
58 cd08407 C2B_Synaptotagmin-13 C 99.7 2.4E-17 5.3E-22 118.7 8.3 93 74-178 13-112 (138)
59 cd08406 C2B_Synaptotagmin-12 C 99.7 2.5E-17 5.5E-22 118.5 7.9 91 74-178 13-110 (136)
60 cd04017 C2D_Ferlin C2 domain f 99.7 1.7E-16 3.6E-21 114.2 12.2 92 76-181 1-102 (135)
61 cd04037 C2E_Ferlin C2 domain f 99.7 1.6E-16 3.4E-21 112.8 11.7 89 78-181 2-93 (124)
62 cd08390 C2A_Synaptotagmin-15-1 99.7 1E-16 2.2E-21 113.4 10.3 103 74-189 12-120 (123)
63 cd04044 C2A_Tricalbin-like C2 99.7 1.9E-16 4.1E-21 111.9 11.6 94 76-184 2-98 (124)
64 cd04027 C2B_Munc13 C2 domain s 99.7 1.8E-16 4E-21 112.8 11.5 96 76-188 1-108 (127)
65 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.4E-16 3E-21 114.2 10.9 91 77-183 1-99 (133)
66 cd08384 C2B_Rabphilin_Doc2 C2 99.7 6E-17 1.3E-21 116.1 8.9 91 74-178 11-108 (133)
67 cd08675 C2B_RasGAP C2 domain s 99.7 1.8E-16 3.9E-21 114.3 10.6 97 78-189 1-117 (137)
68 cd04043 C2_Munc13_fungal C2 do 99.7 3.2E-16 7E-21 111.2 11.3 90 77-181 2-95 (126)
69 cd08404 C2B_Synaptotagmin-4 C2 99.7 5.3E-17 1.1E-21 116.9 6.9 90 75-178 14-110 (136)
70 cd08410 C2B_Synaptotagmin-17 C 99.7 8E-17 1.7E-21 115.9 7.8 90 74-177 12-108 (135)
71 cd08389 C2A_Synaptotagmin-14_1 99.7 2.2E-16 4.8E-21 112.0 9.6 101 74-189 14-121 (124)
72 cd08382 C2_Smurf-like C2 domai 99.7 5.7E-16 1.2E-20 109.7 11.5 89 78-183 2-94 (123)
73 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.5E-16 3.4E-21 114.5 8.7 91 74-178 13-110 (136)
74 cd04051 C2_SRC2_like C2 domain 99.7 3.1E-16 6.6E-21 111.2 9.3 94 77-184 1-100 (125)
75 cd04014 C2_PKC_epsilon C2 doma 99.7 1.1E-15 2.4E-20 109.4 12.3 107 76-189 4-115 (132)
76 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.5E-16 3.2E-21 114.3 7.3 90 74-177 12-108 (134)
77 cd08373 C2A_Ferlin C2 domain f 99.7 7.1E-16 1.5E-20 109.7 10.7 87 82-184 2-90 (127)
78 cd08408 C2B_Synaptotagmin-14_1 99.7 2E-16 4.4E-21 114.2 7.2 93 74-180 13-113 (138)
79 PLN02223 phosphoinositide phos 99.7 1E-15 2.2E-20 129.9 12.1 133 23-184 374-513 (537)
80 cd08405 C2B_Synaptotagmin-7 C2 99.7 5E-16 1.1E-20 111.8 8.7 92 74-179 13-111 (136)
81 cd04040 C2D_Tricalbin-like C2 99.7 1.1E-15 2.4E-20 106.7 10.2 91 78-183 1-93 (115)
82 cd04048 C2A_Copine C2 domain f 99.6 1.4E-15 3E-20 107.2 9.8 87 82-183 6-104 (120)
83 PLN03008 Phospholipase D delta 99.6 1.4E-15 3.1E-20 134.1 11.4 113 75-190 13-156 (868)
84 cd08686 C2_ABR C2 domain in th 99.6 5.8E-15 1.3E-19 102.8 10.8 79 78-178 1-92 (118)
85 cd08409 C2B_Synaptotagmin-15 C 99.6 2.4E-15 5.3E-20 108.4 9.0 92 74-180 13-111 (137)
86 cd00276 C2B_Synaptotagmin C2 d 99.6 1.6E-15 3.4E-20 108.6 7.9 99 75-188 13-118 (134)
87 cd04013 C2_SynGAP_like C2 doma 99.6 9.8E-15 2.1E-19 105.8 12.0 96 74-190 9-111 (146)
88 PLN02230 phosphoinositide phos 99.6 5.3E-15 1.2E-19 127.6 10.9 137 22-184 432-574 (598)
89 cd04021 C2_E3_ubiquitin_ligase 99.6 1.3E-14 2.9E-19 102.9 11.2 88 77-182 3-92 (125)
90 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.5E-14 3.2E-19 102.3 11.2 97 74-184 13-116 (123)
91 cd00275 C2_PLC_like C2 domain 99.6 1.6E-14 3.4E-19 102.6 11.3 94 76-182 2-102 (128)
92 KOG0169|consensus 99.6 3E-15 6.6E-20 129.7 9.0 127 26-184 585-720 (746)
93 cd04047 C2B_Copine C2 domain s 99.6 1.3E-14 2.9E-19 100.6 9.7 88 80-182 4-101 (110)
94 PF00168 C2: C2 domain; Inter 99.6 1.1E-14 2.4E-19 95.5 8.1 81 78-173 1-85 (85)
95 cd08691 C2_NEDL1-like C2 domai 99.6 5.2E-14 1.1E-18 101.3 12.0 90 77-184 2-109 (137)
96 PLN02952 phosphoinositide phos 99.6 2.7E-14 5.9E-19 123.5 12.1 136 23-184 434-575 (599)
97 cd08690 C2_Freud-1 C2 domain f 99.6 7.7E-14 1.7E-18 102.2 12.1 75 108-182 22-110 (155)
98 PLN02222 phosphoinositide phos 99.6 5.5E-14 1.2E-18 121.2 12.2 138 19-184 412-557 (581)
99 PLN03200 cellulose synthase-in 99.5 1.8E-14 3.8E-19 137.2 8.9 99 75-189 1979-2079(2102)
100 cd04052 C2B_Tricalbin-like C2 99.5 7E-14 1.5E-18 97.2 8.2 81 108-189 10-93 (111)
101 KOG1028|consensus 99.5 1.6E-13 3.5E-18 115.6 9.5 97 73-183 164-265 (421)
102 cd08383 C2A_RasGAP C2 domain ( 99.5 8.9E-13 1.9E-17 92.1 10.9 94 78-190 2-98 (117)
103 PLN02228 Phosphoinositide phos 99.5 4.9E-13 1.1E-17 115.1 11.1 98 76-184 431-537 (567)
104 smart00239 C2 Protein kinase C 99.4 2.5E-12 5.5E-17 86.2 11.2 92 78-184 2-97 (101)
105 cd08374 C2F_Ferlin C2 domain s 99.4 2.4E-12 5.3E-17 91.8 10.6 96 78-183 2-125 (133)
106 PLN02270 phospholipase D alpha 99.4 5.3E-12 1.2E-16 111.6 11.9 114 75-190 7-127 (808)
107 cd00030 C2 C2 domain. The C2 d 99.4 1.5E-11 3.2E-16 82.0 10.8 97 78-189 1-101 (102)
108 KOG1028|consensus 99.3 6.7E-12 1.5E-16 105.8 10.1 137 26-178 247-393 (421)
109 KOG1264|consensus 99.3 6.9E-12 1.5E-16 109.4 9.8 93 76-184 1065-1165(1267)
110 KOG1011|consensus 99.3 3.8E-12 8.3E-17 109.0 6.3 93 74-182 293-397 (1283)
111 COG5038 Ca2+-dependent lipid-b 99.2 4.3E-11 9.4E-16 108.1 8.1 96 74-184 1038-1135(1227)
112 KOG1031|consensus 99.2 3.7E-11 8E-16 102.1 5.2 103 76-191 3-119 (1169)
113 COG5038 Ca2+-dependent lipid-b 99.0 8.4E-10 1.8E-14 100.0 9.0 95 74-182 434-530 (1227)
114 cd08689 C2_fungal_Pkc1p C2 dom 99.0 3.3E-09 7.1E-14 71.9 8.1 87 78-181 1-88 (109)
115 KOG1328|consensus 98.9 6.4E-10 1.4E-14 96.5 2.5 93 75-181 946-1049(1103)
116 KOG2059|consensus 98.9 5.5E-09 1.2E-13 90.4 7.3 97 75-188 4-103 (800)
117 KOG2059|consensus 98.7 2.4E-08 5.2E-13 86.6 6.7 129 13-188 99-249 (800)
118 KOG1265|consensus 98.7 6.2E-08 1.3E-12 85.9 7.2 121 26-184 669-799 (1189)
119 KOG1011|consensus 98.7 1.2E-07 2.6E-12 82.0 8.5 113 59-190 1112-1235(1283)
120 PLN02352 phospholipase D epsil 98.5 3.8E-07 8.2E-12 81.1 8.8 97 75-190 9-110 (758)
121 KOG1326|consensus 98.4 1.4E-07 3E-12 84.6 3.1 89 75-178 612-703 (1105)
122 cd08683 C2_C2cd3 C2 domain fou 98.3 1.2E-06 2.5E-11 61.5 5.5 112 78-190 1-143 (143)
123 KOG1328|consensus 98.3 1E-07 2.2E-12 83.2 -1.0 100 74-188 112-279 (1103)
124 KOG0905|consensus 98.2 1.3E-06 2.7E-11 79.9 4.7 103 74-190 1522-1633(1639)
125 KOG1013|consensus 98.1 4.3E-06 9.3E-11 67.2 4.9 87 74-174 231-324 (362)
126 KOG1013|consensus 98.1 5.3E-07 1.2E-11 72.3 -0.8 96 74-183 91-194 (362)
127 KOG1326|consensus 98.0 1.1E-06 2.4E-11 78.9 0.2 94 74-181 204-306 (1105)
128 PLN02964 phosphatidylserine de 97.9 3E-05 6.4E-10 68.6 6.5 85 75-181 53-139 (644)
129 KOG2060|consensus 97.6 3.6E-05 7.8E-10 62.9 2.6 102 75-191 268-378 (405)
130 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00024 5.2E-09 46.7 3.6 65 123-188 36-101 (103)
131 cd08398 C2_PI3K_class_I_alpha 96.8 0.016 3.4E-07 42.7 9.2 86 76-179 8-106 (158)
132 cd08397 C2_PI3K_class_III C2 d 96.8 0.0092 2E-07 44.0 7.7 70 110-179 29-107 (159)
133 KOG1327|consensus 96.8 0.0043 9.2E-08 53.5 6.6 74 108-181 154-236 (529)
134 cd08693 C2_PI3K_class_I_beta_d 96.5 0.035 7.6E-07 41.5 9.4 88 76-179 8-120 (173)
135 cd08380 C2_PI3K_like C2 domain 96.4 0.043 9.4E-07 40.1 9.0 89 76-179 8-107 (156)
136 KOG3837|consensus 96.2 0.0031 6.7E-08 52.6 2.4 74 111-184 388-478 (523)
137 PF12416 DUF3668: Cep120 prote 96.0 0.069 1.5E-06 44.2 9.3 85 78-179 2-94 (340)
138 PF00792 PI3K_C2: Phosphoinosi 95.1 0.11 2.4E-06 37.4 6.8 54 125-179 23-85 (142)
139 cd04012 C2A_PI3K_class_II C2 d 94.6 0.3 6.6E-06 36.3 8.2 90 76-179 8-119 (171)
140 cd08399 C2_PI3K_class_I_gamma 94.6 0.53 1.2E-05 35.3 9.4 87 77-178 11-121 (178)
141 PF10358 NT-C2: N-terminal C2 94.4 0.5 1.1E-05 33.7 8.8 92 74-183 5-108 (143)
142 PF14429 DOCK-C2: C2 domain in 93.4 0.4 8.7E-06 36.0 6.9 56 123-178 60-120 (184)
143 PF15625 CC2D2AN-C2: CC2D2A N- 92.2 1.5 3.3E-05 32.4 8.4 67 111-179 37-106 (168)
144 smart00142 PI3K_C2 Phosphoinos 92.1 1.5 3.3E-05 29.4 7.6 52 111-162 32-91 (100)
145 PF15627 CEP76-C2: CEP76 C2 do 91.9 0.97 2.1E-05 33.2 6.8 98 74-183 7-119 (156)
146 cd08695 C2_Dock-B C2 domains f 91.3 0.84 1.8E-05 34.6 6.2 55 123-177 54-112 (189)
147 cd08694 C2_Dock-A C2 domains f 89.8 1.5 3.2E-05 33.4 6.4 55 123-177 54-114 (196)
148 cd08696 C2_Dock-C C2 domains f 89.3 2.1 4.5E-05 32.2 6.8 56 123-178 55-118 (179)
149 cd08679 C2_DOCK180_related C2 88.5 2.5 5.5E-05 31.5 6.9 55 124-178 54-115 (178)
150 cd08697 C2_Dock-D C2 domains f 87.4 3.6 7.9E-05 31.1 7.1 56 123-178 57-123 (185)
151 KOG1327|consensus 83.9 1.2 2.5E-05 38.9 3.3 59 123-182 42-105 (529)
152 KOG1329|consensus 79.7 1.8 4E-05 39.9 3.1 77 111-189 138-218 (887)
153 PF14909 SPATA6: Spermatogenes 79.5 20 0.00044 25.7 8.0 70 111-180 20-100 (140)
154 KOG1452|consensus 74.7 12 0.00027 30.7 6.2 77 74-165 49-126 (442)
155 cd08687 C2_PKN-like C2 domain 74.6 22 0.00047 23.8 6.3 63 111-179 9-72 (98)
156 PF11618 DUF3250: Protein of u 64.4 9.5 0.00021 26.1 3.1 68 114-181 2-75 (107)
157 KOG0906|consensus 62.2 9.1 0.0002 34.5 3.3 70 109-178 45-123 (843)
158 KOG4269|consensus 40.9 19 0.00041 33.7 2.0 66 75-162 758-828 (1112)
159 PF12416 DUF3668: Cep120 prote 39.5 2.3E+02 0.0049 23.7 12.6 165 8-184 100-298 (340)
160 KOG0694|consensus 39.5 9.6 0.00021 34.4 -0.1 64 110-176 27-92 (694)
161 PF14186 Aida_C2: Cytoskeletal 38.0 86 0.0019 22.8 4.6 91 74-182 11-115 (147)
162 KOG0703|consensus 37.3 13 0.00029 30.0 0.5 54 2-61 17-80 (287)
163 KOG2419|consensus 35.4 7.5 0.00016 35.0 -1.3 56 111-167 305-361 (975)
164 cd04019 C2C_MCTP_PRT_plant C2 32.6 48 0.001 23.9 2.7 34 9-42 96-134 (150)
165 PF01060 DUF290: Transthyretin 30.6 83 0.0018 19.9 3.3 23 153-175 13-36 (80)
166 PF07162 B9-C2: Ciliary basal 30.3 1.7E+02 0.0038 21.4 5.4 44 133-176 55-101 (168)
167 PTZ00447 apical membrane antig 29.6 3.5E+02 0.0075 22.9 8.5 65 112-178 75-141 (508)
168 PF10409 PTEN_C2: C2 domain of 25.5 2.3E+02 0.005 19.5 8.0 70 109-180 23-98 (134)
169 KOG2754|consensus 24.6 2E+02 0.0044 24.4 5.2 51 139-190 353-404 (443)
170 KOG0904|consensus 21.7 2.8E+02 0.006 26.5 5.9 36 125-160 383-420 (1076)
No 1
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=99.94 E-value=1.3e-27 Score=151.13 Aligned_cols=69 Identities=61% Similarity=1.029 Sum_probs=65.0
Q ss_pred CccccccCCceeeehhccccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCC-CCCchhhhcccccCCCC
Q psy13645 1 MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPEGV 69 (191)
Q Consensus 1 l~~iy~~~~h~~~~~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~-~~~~~~i~~~~l~~~~~ 69 (191)
|++||+||+|+|+|||+.|++|+|.++|++|||||+|+|+|+||++++.... .++++|||+|+|+|.|+
T Consensus 3 lgtVY~qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~~~~~~~~ddiE~NLL~P~G~ 72 (72)
T PF08151_consen 3 LGTVYNQPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEKKPTDEDEDDIEKNLLLPAGV 72 (72)
T ss_pred eeeeecCCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCCCCcccccchhhHhcCCCCCC
Confidence 5799999999999999999999999999999999999999999999998876 67789999999999885
No 2
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.93 E-value=7.8e-25 Score=159.89 Aligned_cols=115 Identities=70% Similarity=1.123 Sum_probs=97.4
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
.|.|+|++|++||.||...........+++..+.+||||+|.+++.+.+|++++++.||+|||+|.|++..|+....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 37899999999999996422111111223345678999999999999999999999999999999999888887778999
Q ss_pred EEEECCCCC-CceEEEEEeeccccccCCCCCccccC
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYTY 191 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~f 191 (191)
+|||+|..+ |++||++.++|++|...+.+||||+|
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~ 116 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTF 116 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCcc
Confidence 999999987 99999999999999999999999987
No 3
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.84 E-value=8.2e-20 Score=126.55 Aligned_cols=98 Identities=23% Similarity=0.360 Sum_probs=82.7
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+.|.|+|.+|++|+..+.. ....+.+||||++.+++.+.||++++++.||+|||.|.|.+........|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~----------~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~ 70 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNM----------TRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQ 70 (108)
T ss_pred CEEEEEEEeeeCCCCcccc----------CCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEE
Confidence 3689999999999987631 011245799999999989999999999999999999999986555555799
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
|+|||++..+ |++||++.++|++|..+.
T Consensus 71 ~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 71 FKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9999999988 999999999999997643
No 4
>KOG1030|consensus
Probab=99.83 E-value=3.4e-20 Score=134.51 Aligned_cols=95 Identities=25% Similarity=0.402 Sum_probs=84.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
..+.|+|+|.+|.+|...|. .+.+||||.+++++++.||+++.++.||+|||+|+|.+..|. ..
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~--------------~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~--~~ 67 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF--------------LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN--TP 67 (168)
T ss_pred cceEEEEEEEeecCeeeecc--------------ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC--ce
Confidence 35789999999999987773 266899999999999999999999999999999999987654 55
Q ss_pred EEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
|+++|||+|..+ ||++|.+.|+|..+.+.+.
T Consensus 68 lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 68 LKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred EEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence 999999999999 9999999999999876544
No 5
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=1e-19 Score=126.93 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=80.1
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG----LTGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
....|+|+|++|++|+ ++ +.+||||++.+.. .+.+|+++++++||+|||+|.|.+....
T Consensus 12 ~~~~L~V~vikA~~L~-~~----------------g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 12 QKAELHVNILEAENIS-VD----------------AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred cCCEEEEEEEEecCCC-CC----------------CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 4678999999999998 33 3489999999975 3889999999999999999999975443
Q ss_pred CC-ceEEEEEEECCCCC-CceEEEEEeecccccc-CCCCCc
Q psy13645 150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISN-DGDKGK 187 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~-~~~~g~ 187 (191)
+. ..|.|+|||+|+.+ +++||++.++++.+.. .+.+.|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence 43 35999999999998 9999999999998743 333444
No 6
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.3e-19 Score=127.53 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=80.2
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------LTGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
+|+|+|.+|++|+.++ .+.+||||+|++.| .+.+|+++.+++||+|||.|.|.+....
T Consensus 1 kL~V~Vi~A~~L~~~d---------------~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~ 65 (120)
T cd08395 1 KVTVKVVAANDLKWQT---------------TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNED 65 (120)
T ss_pred CEEEEEEECcCCCccc---------------CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcC
Confidence 4899999999998765 26689999999843 2578999999999999999999985432
Q ss_pred -CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 150 -LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 150 -~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.. ..|.|+|||++..+ +++||++.++|+++..++. +.|+|
T Consensus 66 ~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~ 109 (120)
T cd08395 66 DPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLP 109 (120)
T ss_pred CCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence 12 34999999999887 9999999999999987665 35554
No 7
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.82 E-value=1.1e-19 Score=126.40 Aligned_cols=101 Identities=37% Similarity=0.507 Sum_probs=86.1
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCcc-ccEEEEEeeCCCC-CceEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVW-NEQIIFSEMFPPL-CSRIK 155 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~w-ne~~~f~~~~p~~-~~~l~ 155 (191)
|.|+|++|++|+.++.. .+.+||||++.+++.+.+|++++++.||.| ||.|.|.+..+.+ ...|.
T Consensus 1 l~V~v~~a~~L~~~d~~-------------~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~ 67 (110)
T cd08688 1 LKVRVVAARDLPVMDRS-------------SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQ 67 (110)
T ss_pred CEEEEEEEECCCccccC-------------CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEE
Confidence 57999999999988731 366899999999999999999999999999 9999999754433 35699
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCC----CCCccccC
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG----DKGKDYTY 191 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~----~~g~~p~f 191 (191)
|+|||++..+ +++||++.+++.++...+ -++|+|.+
T Consensus 68 i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 68 IRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred EEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9999999987 899999999999998743 27898853
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=4.9e-19 Score=124.83 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=81.5
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l 154 (191)
+.|.|+|.+|++++..+ .+.+||||++.+++.+.+|+++.+ +.||+|||+|.|.+..+ ...|
T Consensus 2 g~L~v~v~~Ak~l~~~~---------------~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l 64 (121)
T cd04016 2 GRLSITVVQAKLVKNYG---------------LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSI 64 (121)
T ss_pred cEEEEEEEEccCCCcCC---------------CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEE
Confidence 57999999999887554 256899999999999999999876 79999999999997432 3469
Q ss_pred EEEEEECCCCC-CceEEEEEeecc-ccccCC-CCCccc
Q psy13645 155 KIQLRDNDPVN-NTVIGTHYIDLK-NISNDG-DKGKDY 189 (191)
Q Consensus 155 ~i~v~d~d~~~-d~~iG~~~l~l~-~i~~~~-~~g~~p 189 (191)
.|+|||+|..+ |++||.+.+++. .+..+. .+.|+|
T Consensus 65 ~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~ 102 (121)
T cd04016 65 YIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYS 102 (121)
T ss_pred EEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEe
Confidence 99999999998 999999999996 465544 377876
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=2e-19 Score=127.62 Aligned_cols=97 Identities=24% Similarity=0.368 Sum_probs=82.7
Q ss_pred EEEEEEEEecC---CCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 77 RFIIRIYRADG---LPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 77 ~L~v~i~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
.|+|+|.+|++ |+.+|. .+.+||||++++++++.+|++++++.||+|||+|.|.+..+ ...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~--------------~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~ 64 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG--------------RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTV 64 (126)
T ss_pred CeEEEEEEeECCcccccccc--------------CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCE
Confidence 37899999999 666653 47799999999999999999999999999999999997543 346
Q ss_pred EEEEEEECCCC-------CCceEEEEEeeccccccCCC-CCccc
Q psy13645 154 IKIQLRDNDPV-------NNTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 154 l~i~v~d~d~~-------~d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
|.|+|||++.. +|++||++.++|+.+..+.. +.|+|
T Consensus 65 l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~ 108 (126)
T cd08379 65 LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYP 108 (126)
T ss_pred EEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence 99999999886 59999999999999877655 55655
No 10
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=7.4e-19 Score=129.70 Aligned_cols=113 Identities=31% Similarity=0.490 Sum_probs=89.0
Q ss_pred ceEEEEEEEEecCCCCCCh------HHHHhhhhhhc----------CCCCCccCcEEEEEECCe-eeeeeeecCCCCCcc
Q psy13645 75 HARFIIRIYRADGLPKMNS------SLVANVKKAFT----------GETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVW 137 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~------~~~~~~~~~~~----------~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~w 137 (191)
++.|.|+|++|++||.||. .++..+...+. ....+.+||||+|.+++. ..+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 5789999999999999983 22332222110 023567899999999986 469999999999999
Q ss_pred ccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645 138 NEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 138 ne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
||+|.|.+. .....|.|+|||++..++++||++.++++++..++. ++|+|
T Consensus 86 nE~F~~~~~--~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~ 136 (158)
T cd04015 86 NESFHIYCA--HYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLP 136 (158)
T ss_pred ceEEEEEcc--CCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEE
Confidence 999999864 345569999999998888899999999999976544 57776
No 11
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=2.8e-19 Score=126.51 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=83.8
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEe-eCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSE-MFP 148 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~-~~p 148 (191)
...|.|.|.+|++|+.++ .+.+||||++.+.+ .+.+|++++++.||.|||+|.|.+ ...
T Consensus 12 ~~~L~V~Vi~A~~L~~~~---------------~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD---------------GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CCEEEEEEEEeeCCCCCC---------------CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 467999999999999876 25689999999974 378999999999999999999986 211
Q ss_pred CC-CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.+ ...|.|+|||++..+ +++||++.++|+++..... ++|+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~ 120 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP 120 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEE
Confidence 22 346999999999988 9999999999999986654 78876
No 12
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=4.3e-19 Score=126.24 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=81.6
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCC----CCCce
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFP----PLCSR 153 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p----~~~~~ 153 (191)
++|+|++|++|+.++. .+.+||||++.+++.+.+|++++++.||+|||.|.|.+... .....
T Consensus 1 ~~V~V~~A~~L~~~d~--------------~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCKGK--------------SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCCCC--------------CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCE
Confidence 4789999999998763 46789999999999999999999999999999999987441 12346
Q ss_pred EEEEEEECCCCC-CceEEEEEeecccccc--CCC-CCccc
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN--DGD-KGKDY 189 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~--~~~-~g~~p 189 (191)
|.|+|||++..+ |++||++.++|+++.. +.. ..|+|
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~ 106 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFK 106 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEE
Confidence 999999999887 9999999999999873 222 45665
No 13
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.80 E-value=1.3e-18 Score=123.58 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=85.0
Q ss_pred ccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEE
Q psy13645 64 LLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIF 143 (191)
Q Consensus 64 l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f 143 (191)
+.|.+..+.+..++|+|+|++|++|+. +. .+..||||+|.+++.+.+|++++++.||+|||+|.|
T Consensus 16 ~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~--------------~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f 80 (127)
T cd04032 16 VNSNCCPTRRGLATLTVTVLRATGLWG-DY--------------FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDF 80 (127)
T ss_pred cCCCcCcCcCCcEEEEEEEEECCCCCc-Cc--------------CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEE
Confidence 334444444567899999999999973 32 356899999999999999999999999999999999
Q ss_pred EeeCCCCCceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645 144 SEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 144 ~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~ 182 (191)
..........|+|+|||++..+ |++||++.++|.....+
T Consensus 81 ~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 81 GSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred ecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 7433334567999999999987 99999999999977643
No 14
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.80 E-value=7.6e-19 Score=122.28 Aligned_cols=98 Identities=30% Similarity=0.410 Sum_probs=81.4
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCC-CccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCC--
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETK-DLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPP-- 149 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~-- 149 (191)
+.|+|+|++|++|+.++. . +.+||||++.+.+ ...+|++++++.||+|||.|.|.+..+.
T Consensus 1 G~L~V~v~~a~~L~~~d~--------------~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~ 66 (111)
T cd04041 1 GVLVVTIHRATDLPKADF--------------GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVK 66 (111)
T ss_pred CEEEEEEEEeeCCCcccC--------------CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhcc
Confidence 478999999999998773 3 5689999999854 3689999999999999999999875442
Q ss_pred CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645 150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY 189 (191)
Q Consensus 150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p 189 (191)
....|.|+|||++..+ +++||++.++++++.. ..+|.|
T Consensus 67 ~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~--~~~~~~ 105 (111)
T cd04041 67 AGERLSCRLWDSDRFTADDRLGRVEIDLKELIE--DRNWMG 105 (111)
T ss_pred CCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc--CCCCCc
Confidence 2346999999999988 9999999999999973 445554
No 15
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=8.3e-19 Score=124.63 Aligned_cols=104 Identities=23% Similarity=0.314 Sum_probs=85.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|.|++|++|+.++. ..+.+||||++.+.+ .+.||++++++.||.|||.|.|.+...
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~-------------~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDE-------------AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CCCeEEEEEEEecCCCccCC-------------CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 45689999999999997763 136789999999853 267999999999999999999997543
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
.+. ..|.|+|||++..+ +++||++.++|..+..... ++|+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 333 46999999999988 9999999999999966544 788874
No 16
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.79 E-value=1.5e-18 Score=119.59 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=82.2
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQ 157 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~ 157 (191)
|.|+|.+|++|+..+. .+..||||++++++...+|++++++.||.|||.|.|.+..|. .+.|.|+
T Consensus 2 L~V~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~v~ 66 (105)
T cd04050 2 LFVYLDSAKNLPLAKS--------------TKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE-NQELEIE 66 (105)
T ss_pred EEEEEeeecCCCCccc--------------CCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC-CCEEEEE
Confidence 7899999999997763 467999999999999999999999999999999999986554 3469999
Q ss_pred EEECCCCCCceEEEEEeeccccccCC---CCCccc
Q psy13645 158 LRDNDPVNNTVIGTHYIDLKNISNDG---DKGKDY 189 (191)
Q Consensus 158 v~d~d~~~d~~iG~~~l~l~~i~~~~---~~g~~p 189 (191)
|||.+. +++||++.++|.++.... .++|+|
T Consensus 67 v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~ 99 (105)
T cd04050 67 VKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFP 99 (105)
T ss_pred EEECCC--CCccEEEEEEHHHhhccccceeeeeEe
Confidence 999876 889999999999997654 257776
No 17
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.79 E-value=9.6e-19 Score=123.26 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=84.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|.+|++|+.++ .+.+||||++.+.+. +.+|++++++.||.|||+|.|.+...
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~---------------~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~ 74 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN---------------SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNER 74 (119)
T ss_pred cCCEEEEEEEEEECCCCCC---------------CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChH
Confidence 3468999999999999876 256899999999752 66899999999999999999997544
Q ss_pred CCCceEEEEEEECCCCC--CceEEEEEeeccccccCCC-CCccc
Q psy13645 149 PLCSRIKIQLRDNDPVN--NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 149 ~~~~~l~i~v~d~d~~~--d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.....|.|+|||++... +++||.+.|+|.++..+.. ++|++
T Consensus 75 ~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 75 DYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred HhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 44456999999998764 6899999999999975443 78875
No 18
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.1e-18 Score=123.65 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=84.4
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|++|++|+.++. .+..||||++.+.+ .+.+|++++++.||.|||.|.|.+..+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 79 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDD--------------GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79 (125)
T ss_pred CCCEEEEEEEEecCCCCcCC--------------CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence 34689999999999998774 36789999999975 378999999999999999999985332
Q ss_pred -C-CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645 149 -P-LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY 189 (191)
Q Consensus 149 -~-~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p 189 (191)
. ....|.|+|||++..+ +++||++.++|++....+.+.|+|
T Consensus 80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~ 123 (125)
T cd04031 80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYP 123 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEE
Confidence 1 2346999999999887 999999999999955555577876
No 19
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=3.8e-18 Score=120.17 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=79.3
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
..|.|+|.+|++|+..+ ..||||++++++.+.+|++.++ .||.|||+|.|.+.. ....|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----------------~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----------------KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----------------CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEE
Confidence 57999999999997543 3589999999999999999987 599999999999753 345599
Q ss_pred EEEEECCCCCCceEEEEEeeccccccCCC---CCccc
Q psy13645 156 IQLRDNDPVNNTVIGTHYIDLKNISNDGD---KGKDY 189 (191)
Q Consensus 156 i~v~d~d~~~d~~iG~~~l~l~~i~~~~~---~g~~p 189 (191)
|+|||++..+|++||++.++|+++..+.. ..|+|
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~ 98 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLT 98 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEe
Confidence 99999997779999999999999876544 34655
No 20
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.78 E-value=3.6e-18 Score=120.91 Aligned_cols=98 Identities=28% Similarity=0.390 Sum_probs=83.6
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
+|+|+|++|++|+.++. .+.+||||++.+++...+|++++++.||.|||+|.|.+..+. ...|.|
T Consensus 1 ~L~v~vi~a~~L~~~d~--------------~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~~~l~~ 65 (123)
T cd04025 1 RLRCHVLEARDLAPKDR--------------NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSV 65 (123)
T ss_pred CEEEEEEEeeCCCCCCC--------------CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC-CCEEEE
Confidence 48999999999998774 356899999999999999999999999999999999975443 456999
Q ss_pred EEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
+|||++..+ +++||.+.++|+++..++. ++|+.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~ 100 (123)
T cd04025 66 EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFR 100 (123)
T ss_pred EEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEE
Confidence 999999888 9999999999999976543 56653
No 21
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.9e-18 Score=120.43 Aligned_cols=99 Identities=23% Similarity=0.400 Sum_probs=82.7
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l 154 (191)
+.|+|+|.+|++|+..+. .+.+||||++.+++.+.+|+++.+ +.||.|||.|.|.+..+ ....|
T Consensus 1 g~L~V~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l 65 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK--------------LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPIL 65 (118)
T ss_pred CEEEEEEEEccCCCCCCc--------------CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEE
Confidence 368999999999998774 366899999999999999998754 79999999999997644 34569
Q ss_pred EEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 155 ~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.|+|||++..++++||++.++++++..++. +.|++
T Consensus 66 ~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~ 101 (118)
T cd08681 66 KVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYE 101 (118)
T ss_pred EEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEE
Confidence 999999988778999999999999865433 56654
No 22
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.8e-18 Score=122.86 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=83.7
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|.|+|++|++|+.++. ..+.+||||++.+.+ .+.+|++++++.||+|||.|.|.+....
T Consensus 14 ~~~L~V~vi~a~~L~~~d~-------------~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 14 LRELHVHVIQCQDLAAADP-------------KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CCEEEEEEEEeCCCCCcCC-------------CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 4579999999999998873 126789999999853 2579999999999999999999974333
Q ss_pred CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC-CCCccc
Q psy13645 150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG-DKGKDY 189 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-~~g~~p 189 (191)
+. ..|.|+|||++..+ +++||++.++|.++...+ ...|+|
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~ 123 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP 123 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence 33 46999999999887 999999999999996543 366776
No 23
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=2.9e-18 Score=121.08 Aligned_cols=97 Identities=21% Similarity=0.353 Sum_probs=82.0
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+|+|+|.+|++|+.++. .+.+||||++.+++ ...+|++++++.||.|||.|.|.+.. ....|.
T Consensus 1 ~L~v~v~~a~~L~~~d~--------------~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~ 64 (121)
T cd04042 1 QLDIHLKEGRNLAARDR--------------GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLY 64 (121)
T ss_pred CeEEEEEEeeCCCCcCC--------------CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEE
Confidence 47899999999998774 36789999999988 48899999999999999999999753 346799
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
|+|||++..+ +++||++.++++++..++. +.|+|
T Consensus 65 ~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~ 100 (121)
T cd04042 65 IKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLK 100 (121)
T ss_pred EEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEE
Confidence 9999999986 9999999999999886543 34443
No 24
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=3.4e-18 Score=125.06 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=83.7
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+|.|+|++|++|+.++. .+.+||||++.++++..+|+++.+ +.||+|||.|.|.+..|. ...|.
T Consensus 1 ~L~V~Vi~A~~L~~~d~--------------~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~-~~~l~ 65 (150)
T cd04019 1 YLRVTVIEAQDLVPSDK--------------NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF-EDHLI 65 (150)
T ss_pred CEEEEEEEeECCCCCCC--------------CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc-CCeEE
Confidence 47899999999998884 467999999999999999999976 699999999999975543 34699
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCC-----CCCcccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG-----DKGKDYT 190 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-----~~g~~p~ 190 (191)
|+|||++..+ +++||++.++|+++..+. .++|+|.
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L 106 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSL 106 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEEC
Confidence 9999999876 999999999999986532 2577763
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=4.7e-18 Score=123.38 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=81.9
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|.|.|.+|++|+.++. ..+.+||||++++.+. +.||++++++.||+|||+|.|.+. .
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~-------------~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l 92 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPG-------------SKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--P 92 (146)
T ss_pred CCEEEEEEEEeeCCCcccC-------------CCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--C
Confidence 3579999999999987642 1467899999999542 789999999999999999999986 2
Q ss_pred CCceEEEEEE-ECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 150 LCSRIKIQLR-DNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 150 ~~~~l~i~v~-d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
....|.|+|| |++..+ +++||++.++|+.+..++. .+|++
T Consensus 93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~ 135 (146)
T cd04028 93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYK 135 (146)
T ss_pred CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEe
Confidence 3456999999 577776 8999999999999854433 57765
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.5e-18 Score=121.66 Aligned_cols=99 Identities=18% Similarity=0.366 Sum_probs=82.3
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC--CceE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL--CSRI 154 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~--~~~l 154 (191)
+|+|+|++|++|+.++. .+.+||||++.+++.+.+|++++++.||.|||.|.|.+..+.. ...|
T Consensus 1 ~L~V~vi~A~~L~~~d~--------------~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l 66 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG--------------QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVL 66 (127)
T ss_pred CeEEEEEEeeCCCCCCC--------------CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeE
Confidence 48999999999998774 3668999999999999999999999999999999999754332 2469
Q ss_pred EEEEEECCCC--CCceEEEEEeeccccccCCC--CCccc
Q psy13645 155 KIQLRDNDPV--NNTVIGTHYIDLKNISNDGD--KGKDY 189 (191)
Q Consensus 155 ~i~v~d~d~~--~d~~iG~~~l~l~~i~~~~~--~g~~p 189 (191)
.|+|||++.. ++++||++.++++++...+. ..|+|
T Consensus 67 ~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~ 105 (127)
T cd04022 67 EVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYP 105 (127)
T ss_pred EEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeE
Confidence 9999999877 48999999999999874333 45554
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=5.2e-18 Score=118.82 Aligned_cols=97 Identities=25% Similarity=0.367 Sum_probs=82.7
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQ 157 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~ 157 (191)
++|+|++|++|+.++. .+.+||||++.+++.+.+|++++++.||.|||+|.|.+..+ ....|.|+
T Consensus 2 ~~V~v~~a~~L~~~~~--------------~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~ 66 (116)
T cd08376 2 VTIVLVEGKNLPPMDD--------------NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIE 66 (116)
T ss_pred EEEEEEEEECCCCCCC--------------CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEE
Confidence 6899999999998774 35689999999999999999999999999999999997543 34579999
Q ss_pred EEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 158 LRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 158 v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
|||++..+ +++||++.++|+++..++. +.|+|
T Consensus 67 v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~ 100 (116)
T cd08376 67 VWDKDTGKKDEFIGRCEIDLSALPREQTHSLELE 100 (116)
T ss_pred EEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEE
Confidence 99999987 9999999999999876543 34443
No 28
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3.8e-18 Score=120.90 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=84.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPL 150 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~ 150 (191)
....|.|+|++|++|+.++. .+..||||++.+.+. ..+|++++++.||.|||.|.|.+..+.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~--------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDM--------------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred CCCEEEEEEEEeeCCCCccC--------------CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 34689999999999998774 356899999998643 6799999999999999999999754333
Q ss_pred C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
. ..|.|+|||++..+ +++||++.++|+++..+.. +.|++
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~ 121 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRD 121 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEE
Confidence 3 46999999999887 9999999999999866433 67765
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.1e-17 Score=120.43 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=82.8
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
..+.|+|+|.+|++|+.++. .+.+||||++.+++...+|++++++.||.|||.|.|.+..+. ...
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~--------------~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~-~~~ 77 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNS--------------NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE-QDV 77 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCC--------------CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc-CCE
Confidence 46899999999999998773 367899999999999999999999999999999999985443 356
Q ss_pred EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
|.|+|||++..+ |++||++.+++.++..
T Consensus 78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 78 LCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 999999999887 9999999999999876
No 30
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=6.1e-18 Score=121.40 Aligned_cols=101 Identities=25% Similarity=0.357 Sum_probs=84.6
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------LTGKTSVKKNSYNPVWNEQIIFSEMF 147 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~~~nP~wne~~~f~~~~ 147 (191)
...|.|+|++|++|+.++. .+..||||+|++.+ ...+|++++++.||+|||.|.|.+..
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~--------------~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 15 EQSLRVEILNARNLLPLDS--------------NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CCEEEEEEEEeeCCCCcCC--------------CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 3579999999999998773 36689999999863 37899999999999999999999753
Q ss_pred CC---CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCccc
Q psy13645 148 PP---LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDY 189 (191)
Q Consensus 148 p~---~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p 189 (191)
.. ....|.|+|||++..+ +++||++.++|+++..-++ .||.|
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~ 130 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFGP 130 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccccccccccccc
Confidence 22 2346999999999988 9999999999999987655 47766
No 31
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=6.3e-18 Score=117.62 Aligned_cols=98 Identities=29% Similarity=0.384 Sum_probs=83.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC---
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL--- 150 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~--- 150 (191)
+.+.|+|+|++|++|+ . +..||||++.+++++.+|++++++.||.|||.|.|.+..+..
T Consensus 2 ~~~~l~V~v~~a~~L~--~----------------~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~ 63 (111)
T cd04011 2 QDFQVRVRVIEARQLV--G----------------GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63 (111)
T ss_pred CcEEEEEEEEEcccCC--C----------------CCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHh
Confidence 3578999999999998 1 458999999999999999999999999999999999755442
Q ss_pred CceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCccc
Q psy13645 151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDY 189 (191)
Q Consensus 151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p 189 (191)
...|.|+|||++..+ +++||++.++|+++..+.. ..|+|
T Consensus 64 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~ 107 (111)
T cd04011 64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLL 107 (111)
T ss_pred cCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEE
Confidence 246999999999887 9999999999999976544 35655
No 32
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=9.8e-18 Score=118.46 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=81.6
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|.|+|++|++|+.++. ..+.+||||.+.+.+. ..+|++++++.||.|||+|.|.+. .....|.|
T Consensus 2 l~v~v~~a~~L~~~~~-------------~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~--~~~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSG-------------PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP--RTFRHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCC-------------CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC--CCCCEEEE
Confidence 6789999999998752 1357899999999876 689999999999999999999974 32356999
Q ss_pred EEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.|||++..+ +++||.+.++++++..++. ++|+|
T Consensus 67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 101 (121)
T cd08401 67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP 101 (121)
T ss_pred EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence 999999987 9999999999999976443 67766
No 33
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=6.5e-18 Score=120.45 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=84.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|.+|++|+.++. ..+..||||++++.+. +.||++++++.||+|||+|.|++...
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~-------------~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDE-------------KKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred CCCEEEEEEEecCCCCccCC-------------CCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 34689999999999998773 1367899999998632 77999999999999999999997543
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCcccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDYT 190 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p~ 190 (191)
.+. ..|.|+|||.+..+ +++||++.|+|+++..... ..|+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 333 46999999999887 9999999999999855422 467763
No 34
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.76 E-value=6.5e-18 Score=118.93 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=78.6
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
|+|+|.+|++|+..+. .+.+||||++.+.+ .+.+|++++++.||.|||+|.|.+..+ ....|
T Consensus 2 L~V~vi~a~~L~~~~~--------------~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDL--------------LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCC--------------CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEE
Confidence 6899999999998763 35689999999864 478999999999999999999997544 34569
Q ss_pred EEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 155 ~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~ 184 (191)
.|+|||++..++++||++.++++++..+..
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~ 96 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEK 96 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCc
Confidence 999999998788999999999999876544
No 35
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.76 E-value=1.6e-17 Score=120.74 Aligned_cols=90 Identities=29% Similarity=0.491 Sum_probs=80.2
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+.|+|+|.+|++|+..+. +.+||||++.+++++.+|++++++.||+|||+|.|.+..| ...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~---------------~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF---------------TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC---------------CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEE
Confidence 579999999999987662 5689999999999999999999999999999999997654 56699
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccC
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~ 182 (191)
|+|||++..+ |++||++.+++.++...
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 9999999988 99999999999998654
No 36
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.76 E-value=4.7e-18 Score=121.23 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=80.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCC-CCccccEEEEEeeC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSY-NPVWNEQIIFSEMF 147 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~-nP~wne~~~f~~~~ 147 (191)
...+|+|.|++|++|++++. .+..||||+|++.+. +.||++++++. +|.|||+|.|.+..
T Consensus 12 ~~~rLtV~VikarnL~~~~~--------------~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSST--------------PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred cCCeEEEEEEEccCCCcccC--------------CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 46789999999999998752 355799999997542 88999999985 69999999999876
Q ss_pred CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCc
Q psy13645 148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGK 187 (191)
Q Consensus 148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~ 187 (191)
+..+..+.|+|||++..+ +++||++.+..+.....+.+.|
T Consensus 78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW 118 (135)
T cd08692 78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQW 118 (135)
T ss_pred hhheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhH
Confidence 555456999999999887 9999999999877433333443
No 37
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=1.2e-17 Score=118.29 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=84.2
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVKKNSYNPVWNEQIIFSEMF 147 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~nP~wne~~~f~~~~ 147 (191)
....|.|.|.+|+||+.++. .+.+||||++.+.+ .+.+|++++++.||+|||.|.|++..
T Consensus 12 ~~~~L~V~V~~arnL~~~~~--------------~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSI--------------PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCCEEEEEEeEecCCccccc--------------CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 45689999999999998763 46789999999853 26899999999999999999999754
Q ss_pred CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC--CCCccc
Q psy13645 148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG--DKGKDY 189 (191)
Q Consensus 148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p 189 (191)
..+. ..|.|+|||++..+ +++||.+.++|+++...+ ...|++
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 3333 46999999999887 999999999999995544 356764
No 38
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.75 E-value=4.7e-17 Score=120.52 Aligned_cols=119 Identities=22% Similarity=0.372 Sum_probs=91.1
Q ss_pred cEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCC
Q psy13645 30 KGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKD 109 (191)
Q Consensus 30 ~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~ 109 (191)
+|-|++++....+.++-.... - ....+.|.|+|.+|++|+.++. .+
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~------------------~--~~~~g~L~V~Vi~A~nL~~~d~--------------~g 46 (162)
T cd04020 1 RGELKVALKYVPPESEGALKS------------------K--KPSTGELHVWVKEAKNLPALKS--------------GG 46 (162)
T ss_pred CceEEEEEEecCccccccccc------------------c--CCCCceEEEEEEeeeCCCCCCC--------------CC
Confidence 477888888766554411110 0 0135789999999999998873 46
Q ss_pred ccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC-CC-CceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 110 LVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP-PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 110 ~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p-~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
.+||||++.+.. .+.+|++++++.||.|||.|.|.+..+ .. ...|.|+|||++..+ +++||++.+++.++..
T Consensus 47 ~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 47 TSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 789999998842 378999999999999999999985322 22 235999999999988 9999999999999865
Q ss_pred C
Q psy13645 182 D 182 (191)
Q Consensus 182 ~ 182 (191)
.
T Consensus 127 ~ 127 (162)
T cd04020 127 Y 127 (162)
T ss_pred C
Confidence 4
No 39
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.3e-17 Score=117.34 Aligned_cols=97 Identities=22% Similarity=0.443 Sum_probs=79.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
+...|+|+|++|++|+..+ .+||||++.+++. ..+|++. ++.||.|||+|.|.+..+.. .
T Consensus 2 ~~~~L~V~Vi~A~~L~~~~-----------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~-~ 62 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVKH-----------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV-N 62 (126)
T ss_pred ceeEEEEEEEEeeCCCCCC-----------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCc-C
Confidence 3467999999999998532 4799999999885 5788874 58999999999998644433 3
Q ss_pred eEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.+.|.|||++..+ +++||.+.++|+++..++. +.|++
T Consensus 63 ~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~ 101 (126)
T cd08400 63 SFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYP 101 (126)
T ss_pred EEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEE
Confidence 5899999999887 9999999999999887655 56665
No 40
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=1.5e-17 Score=121.21 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeC----
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMF---- 147 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~---- 147 (191)
+|+|+|++|++|+. . .+.+||||+|.+.+ .+.+|++++++.||+|||.|.|.+..
T Consensus 1 kL~V~Vi~ArnL~~-~---------------~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~ 64 (148)
T cd04010 1 KLSVRVIECSDLAL-K---------------NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSP 64 (148)
T ss_pred CEEEEEEeCcCCCC-C---------------CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccc
Confidence 47899999999986 2 36789999999987 47899999999999999999999841
Q ss_pred -------CC--CC-ceEEEEEEECCCCC-CceEEEEEeeccccccC--CCCCcccc
Q psy13645 148 -------PP--LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISND--GDKGKDYT 190 (191)
Q Consensus 148 -------p~--~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~--~~~g~~p~ 190 (191)
|. .. ..|.|+|||++..+ +++||++.|+|+.+..+ ...+|+|.
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L 120 (148)
T cd04010 65 EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFL 120 (148)
T ss_pred ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeec
Confidence 21 12 35999999999887 99999999999999876 33678774
No 41
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.1e-17 Score=119.40 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=81.7
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEE-eeCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFS-EMFPP 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~-~~~p~ 149 (191)
....|+|+|++|++|+.++. ..+..||||++.+.+ .+.||++++++.||.|||+|.|. +....
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~-------------~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDE-------------QSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CCCEEEEEEEEeECCCCCCC-------------CCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 34689999999999998773 126689999999863 36799999999999999999994 32111
Q ss_pred -CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC---CCccc
Q psy13645 150 -LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD---KGKDY 189 (191)
Q Consensus 150 -~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~---~g~~p 189 (191)
....|.|+|||++..+ +++||++.++|+++...++ ..|+|
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~ 125 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSRE 125 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEe
Confidence 1235999999999887 9999999999999965533 46665
No 42
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=1.5e-17 Score=117.46 Aligned_cols=87 Identities=26% Similarity=0.481 Sum_probs=76.1
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
+|.|+|.+|++|+.+ .+||||++.+++.+.+|++++++.||+|||+|.|.+..+ ....|.|
T Consensus 1 ~L~V~Vi~a~~L~~~------------------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~ 61 (121)
T cd08378 1 YLYVRVVKARGLPAN------------------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEV 61 (121)
T ss_pred CEEEEEEEecCCCcc------------------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEE
Confidence 489999999999864 269999999999999999999999999999999996433 3456999
Q ss_pred EEEECCCCCCceEEEEEeeccccccC
Q psy13645 157 QLRDNDPVNNTVIGTHYIDLKNISND 182 (191)
Q Consensus 157 ~v~d~d~~~d~~iG~~~l~l~~i~~~ 182 (191)
+|||++..++++||++.++++++...
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~ 87 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTR 87 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCC
Confidence 99999977799999999999998654
No 43
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=4.2e-17 Score=115.57 Aligned_cols=100 Identities=26% Similarity=0.468 Sum_probs=84.4
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCC--Cc
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPL--CS 152 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~--~~ 152 (191)
+.|.|+|++|++|+.++. .+..||||++.+++...+|++.++ +.||.|||.|.|.+..+.. ..
T Consensus 1 g~L~V~V~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~ 66 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF--------------LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDT 66 (124)
T ss_pred CeEEEEEEecCCCCCCCC--------------CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCC
Confidence 368999999999998763 356899999999999889999885 8999999999999865532 34
Q ss_pred eEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.|.|+|||.+..+ +++||++.+++.++..++. ++|++
T Consensus 67 ~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~ 105 (124)
T cd04049 67 KLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAE 105 (124)
T ss_pred EEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceE
Confidence 6999999999887 9999999999999976554 67765
No 44
>KOG0696|consensus
Probab=99.74 E-value=1.4e-18 Score=142.20 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.3
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|+|.|.+|++|.+||. ++.+||||++.+.+. +.+|++++.++||+|||+|+|.+...+
T Consensus 179 ~~~l~v~i~ea~NLiPMDp--------------NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D 244 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDP--------------NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD 244 (683)
T ss_pred CceEEEEehhhccccccCC--------------CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence 4578899999999999995 789999999998753 789999999999999999999987666
Q ss_pred CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645 150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
.+.+|.|+|||||+.+ +||+|...+.+++|.....+||+
T Consensus 245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWy 284 (683)
T KOG0696|consen 245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWY 284 (683)
T ss_pred ccceeEEEEecccccccccccceecccHHHHhhcchhhHH
Confidence 6778999999999998 99999999999999998888875
No 45
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=1.9e-17 Score=117.71 Aligned_cols=101 Identities=25% Similarity=0.454 Sum_probs=84.1
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|.|+|++|++|+.++. .+.+||||++.+.+ .+.+|++++++.||.|||.|.|.+....
T Consensus 15 ~~~L~V~vi~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDS--------------SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCEEEEEEEEEECCCCccC--------------CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 4689999999999998874 36789999999863 4789999999999999999999975433
Q ss_pred CC-ceEEEEEEECCCC--C-CceEEEEEeeccccccCCC-CCccc
Q psy13645 150 LC-SRIKIQLRDNDPV--N-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~--~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
+. ..|.|+|||++.. + +++||.+.++|.++..++. .+|++
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~ 125 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence 33 4699999999874 5 9999999999999966544 68876
No 46
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=2.7e-17 Score=115.79 Aligned_cols=104 Identities=28% Similarity=0.312 Sum_probs=84.7
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
.|+|+|++|++|+.++... .+...+.+||||++.+++...+|++++++.||.|||+|.|.+..+ ....|.|
T Consensus 2 ~l~v~v~~a~~L~~~d~~~--------~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i 72 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFV--------GGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEI 72 (121)
T ss_pred eEEEEEEEccCCccccccc--------ccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEE
Confidence 5899999999999876410 001135689999999999999999999999999999999987533 3456999
Q ss_pred EEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645 157 QLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 157 ~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
+|||++..++++||.+.++++++...+. +.|+|
T Consensus 73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 106 (121)
T cd08391 73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLP 106 (121)
T ss_pred EEEecCCCCCCcEEEEEEEHHHhcccCccceEEE
Confidence 9999987778999999999999976554 56765
No 47
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=2.2e-17 Score=117.05 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=84.2
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL 150 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~ 150 (191)
..+.|.|+|++|++|+.++. .+..||||++.+.. ...+|++++++.||.|||.|.|.+....+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDF--------------SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCC--------------CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 34689999999999998773 35689999999842 37899999999999999999998643332
Q ss_pred C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
. ..|.|+|||++..+ +++||++.++|+++..++. +.|++
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~ 121 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK 121 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEE
Confidence 2 36999999999887 9999999999999975544 66765
No 48
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.74 E-value=2.6e-17 Score=116.33 Aligned_cols=103 Identities=26% Similarity=0.342 Sum_probs=83.9
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|++|++|+.++. ..+..||||++.+.+ .+.+|++++++.||.|||+|.|.+...
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~-------------~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE-------------KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC-------------CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 45689999999999998772 135689999999853 367999999999999999999986433
Q ss_pred CC-CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
.+ ...|.|+|||++..+ +++||++.++|+++..++. ++|+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 32 346999999999887 8999999999999955443 78876
No 49
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=6.6e-17 Score=114.05 Aligned_cols=97 Identities=26% Similarity=0.537 Sum_probs=83.4
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
+.|+|+|.+|++|+..+. .+..||||++.+.+. ..+|++++++.||.|||.|.|.+..+ ...|
T Consensus 1 g~L~V~Vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L 64 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG--------------VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKI 64 (120)
T ss_pred CeEEEEEEeeECCCCccC--------------CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEE
Confidence 368899999999998773 367899999999875 78999999999999999999987543 3579
Q ss_pred EEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645 155 KIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
.|+|||++..+ +++||++.+++.++.....+||+
T Consensus 65 ~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~ 99 (120)
T cd04045 65 TLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKY 99 (120)
T ss_pred EEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceE
Confidence 99999999988 89999999999999887666664
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=9.6e-17 Score=114.14 Aligned_cols=90 Identities=26% Similarity=0.410 Sum_probs=79.0
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
.+.++|+|.+|++|+..+. .+..||||++.+++...+|++++++.||.|||.|.|.+..+ ...|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~--------------~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS--------------GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC--------------CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEE
Confidence 4689999999999998763 46799999999999999999999999999999999986533 4569
Q ss_pred EEEEEECCCCCCceEEEEEeeccccc
Q psy13645 155 KIQLRDNDPVNNTVIGTHYIDLKNIS 180 (191)
Q Consensus 155 ~i~v~d~d~~~d~~iG~~~l~l~~i~ 180 (191)
.|+|||++..+|++||.+.+++..+.
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~ 91 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPND 91 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCC
Confidence 99999999877999999999998754
No 51
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=5.2e-17 Score=115.17 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=83.2
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCC-C
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFP-P 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p-~ 149 (191)
....|.|+|++|++|+.++. .+..||||++.+. +...+|++++++.||.|||+|.|.+... .
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~--------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 14 QESTLTLKILKAVELPAKDF--------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred CCCEEEEEEEEecCCCCccC--------------CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 34689999999999998774 3568999999984 3478999999999999999999974211 1
Q ss_pred -CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645 150 -LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 150 -~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
....|.|+|||++..+ +++||++.++++++..+.. +.|.+.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 1245999999999887 9999999999999976544 677653
No 52
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=7.6e-17 Score=113.87 Aligned_cols=96 Identities=24% Similarity=0.326 Sum_probs=81.4
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|.|+|.+|++|+.++. .+..||||++.+++. ..+|++++++.||.|||.|.|.+. .....|.|
T Consensus 2 l~v~vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v 65 (121)
T cd04054 2 LYIRIVEGKNLPAKDI--------------TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSF 65 (121)
T ss_pred EEEEEEEeeCCcCCCC--------------CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEE
Confidence 7899999999998874 356899999999886 579999999999999999999864 33356999
Q ss_pred EEEECCCCC-CceEEEEEeeccccccCC--CCCccc
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNISNDG--DKGKDY 189 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p 189 (191)
+|||++..+ +++||++.++++++...+ .+.|++
T Consensus 66 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~ 101 (121)
T cd04054 66 YVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMN 101 (121)
T ss_pred EEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEE
Confidence 999999988 999999999999887543 366765
No 53
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.73 E-value=8.6e-17 Score=113.01 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=82.0
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+.|.|+|++|++|+.++. .+..||||++++.+...+|++++++.||.|||+|.|.+. .....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~--------------~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~--~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADI--------------GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK--DIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCC--------------CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec--CcCCEEE
Confidence 468999999999998774 356899999999998899999999999999999999964 3456799
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY 189 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p 189 (191)
|+|||++..+ +++||++.+++.++..+ ...|++
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~~ 98 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNG-ERKWYA 98 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCC-CceEEE
Confidence 9999999876 99999999999998643 334443
No 54
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=7.4e-17 Score=118.06 Aligned_cols=100 Identities=23% Similarity=0.343 Sum_probs=84.5
Q ss_pred ccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----------------------------e
Q psy13645 73 RQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----------------------------T 123 (191)
Q Consensus 73 ~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----------------------------~ 123 (191)
.+...|.|+|++|++|+.+|. .+.+||||++.+.+. .
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~--------------~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDV--------------NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSI 90 (153)
T ss_pred CCeEEEEEEEEeccCCcccCC--------------CCCCCceEEEEEccccccccccccccccccccccccccccccccc
Confidence 367899999999999998874 467999999998532 3
Q ss_pred eeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCCCCcccc
Q psy13645 124 GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYT 190 (191)
Q Consensus 124 ~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~~g~~p~ 190 (191)
.+|++++++.||.|||.|.|.+..+. ...|.|+|||++ +++||++.++++++...+-++|+|.
T Consensus 91 ~kT~v~~~tlnP~WnE~F~f~v~~~~-~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 91 KVTEVKPQTLNPVWNETFRFEVEDVS-NDQLHLDIWDHD---DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred EecceecCCCCCccccEEEEEeccCC-CCEEEEEEEecC---CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 68999999999999999999975432 456999999997 8899999999999987667899873
No 55
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.72 E-value=6.2e-17 Score=115.78 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=86.6
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPPL 150 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~~ 150 (191)
..|+|+|++|++|+..+. .+..||||++.+.+ ...+|++++++.+|.|||+|.|.+..+..
T Consensus 13 ~~l~v~i~~a~nL~~~~~--------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 13 NKLTVEVREAKNLIPMDP--------------NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred CEEEEEEEEeeCCCCcCC--------------CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 679999999999998763 35689999999964 47899999999999999999999765545
Q ss_pred CceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645 151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190 (191)
Q Consensus 151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~ 190 (191)
...|.|+|||++..+ +++||++.++++++.....++|++.
T Consensus 79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L 119 (131)
T cd04026 79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119 (131)
T ss_pred CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEEC
Confidence 567999999999887 9999999999999987666788764
No 56
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=7.2e-17 Score=114.75 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=79.9
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+.|+|+|++|++|+..+.. ..+..||||++.+++...+|++++++.||.|||+|.|.+..+ ....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~------------~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~ 67 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS------------GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLK 67 (128)
T ss_pred CEEEEEEEEeeCCCcccCC------------CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEE
Confidence 3689999999999977630 135689999999999999999999999999999999998543 245699
Q ss_pred EEEEECCCCC-CceEEEEEeecccccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
|+|||++..+ +++||++.+++.++..
T Consensus 68 i~v~d~~~~~~~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 68 LILWDKDRFAGKDYLGEFDIALEEVFA 94 (128)
T ss_pred EEEEECCCCCCCCcceEEEEEHHHhhc
Confidence 9999999886 9999999999999874
No 57
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=8e-17 Score=114.52 Aligned_cols=93 Identities=18% Similarity=0.423 Sum_probs=77.8
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--eeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
|.|+|.+|++|+. . .+.+||||++.+.+ .+.+|++++++.||.|||.|.|.+. + ....|.
T Consensus 1 l~v~v~~A~~L~~-~---------------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~-~~~~l~ 62 (126)
T cd08678 1 LLVKNIKANGLSE-A---------------AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-P-NSKELL 62 (126)
T ss_pred CEEEEEEecCCCC-C---------------CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-C-CCCEEE
Confidence 5789999999986 2 36789999999974 4789999999999999999999973 2 245699
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCCC-CCcc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKD 188 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~ 188 (191)
|+|||++..+ +++||++.++++++..... ..|+
T Consensus 63 ~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 63 FEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred EEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 9999999987 9999999999999876543 3444
No 58
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=2.4e-17 Score=118.71 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=76.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|.|.+|++|+.++.. ..+.+||||++++... +.||++++++.||+|||.|.|.+...
T Consensus 13 ~~~~L~V~V~karnL~~~d~~------------~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLK------------LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCCeEEEEEEEecCCCccccC------------CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 456799999999999988731 1234899999998753 67899999999999999999996533
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.+. ..|.|+|||+|..+ +++||.+.+.+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 333 35999999999988 9999999999864
No 59
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=2.5e-17 Score=118.52 Aligned_cols=91 Identities=26% Similarity=0.360 Sum_probs=75.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|.|++|++|+.++. .+.+||||++.+.+. +.||++++++.||+|||+|.|.+...
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~--------------~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNG--------------KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCCEEEEEEEEeeCCCCccC--------------CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 34689999999999998773 467899999998542 66899999999999999999996443
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.+. ..|.|+|||+|..+ +++||++.+....
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 333 35999999999887 9999999997653
No 60
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=1.7e-16 Score=114.21 Aligned_cols=92 Identities=26% Similarity=0.461 Sum_probs=76.1
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEee-CCC-----
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEM-FPP----- 149 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~-~p~----- 149 (191)
++|+|+|++|++|+.++. .+..||||++.+++.+.+|++++++.||.|||.|.|.+. .+.
T Consensus 1 ~~l~v~V~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~ 66 (135)
T cd04017 1 FQLRAYIYQARDLLAADK--------------SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEI 66 (135)
T ss_pred CEEEEEEEEeecCcCCCC--------------CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHh
Confidence 478999999999998874 467899999999999999999999999999999999742 211
Q ss_pred --CCceEEEEEEECCCCC-CceEEEEEe-ecccccc
Q psy13645 150 --LCSRIKIQLRDNDPVN-NTVIGTHYI-DLKNISN 181 (191)
Q Consensus 150 --~~~~l~i~v~d~d~~~-d~~iG~~~l-~l~~i~~ 181 (191)
....|.|+|||++..+ |++||++.+ ++..+..
T Consensus 67 ~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~ 102 (135)
T cd04017 67 AQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDL 102 (135)
T ss_pred hcCCCEEEEEEEeCcCCCCCccceEEEeeeeeeccc
Confidence 1235999999999988 999999986 5544443
No 61
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.6e-16 Score=112.75 Aligned_cols=89 Identities=24% Similarity=0.397 Sum_probs=77.0
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee--eeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT--GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
++|.|++|++|+.++. .+.+||||++.+++.. .+|++++++.||.|||+|.|.+..+. ...|.
T Consensus 2 lrV~Vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~-~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDP--------------NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG-NSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCC--------------CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC-CCEEE
Confidence 6899999999998874 3678999999999874 67888899999999999999976554 44699
Q ss_pred EEEEECCCCC-CceEEEEEeecccccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
|+|||++..+ +++||++.+++++..-
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 9999999987 9999999999987653
No 62
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=1e-16 Score=113.36 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=84.1
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL 150 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~ 150 (191)
....|.|+|++|++|+.++. ..+..||||++++.+ ...+|++++++.||+|||.|.|.+.....
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~-------------~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK-------------DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CCCEEEEEEEEecCCCCccC-------------CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 45689999999999998762 135689999999843 36789999999999999999999644332
Q ss_pred C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
. ..|.|+|||++..+ +++||++.++|+++..... ..|+|
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~ 120 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD 120 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence 2 46999999999887 9999999999999977655 46765
No 63
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.9e-16 Score=111.92 Aligned_cols=94 Identities=29% Similarity=0.445 Sum_probs=80.9
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--eeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
+.|.|+|++|++|+..+. ..+..||||++.+.+ ...+|++++++.||.|||.|.|.+. .....
T Consensus 2 g~l~v~v~~a~~L~~~~~-------------~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~ 66 (124)
T cd04044 2 GVLAVTIKSARGLKGSDI-------------IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEP 66 (124)
T ss_pred eEEEEEEEcccCCCcccc-------------cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCE
Confidence 578999999999986542 134589999999998 6899999999999999999999875 34567
Q ss_pred EEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
|.|+|||++..+ +++||.+.++|.++...+.
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred EEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence 999999999887 9999999999999987654
No 64
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.8e-16 Score=112.83 Aligned_cols=96 Identities=27% Similarity=0.428 Sum_probs=79.6
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+.|+|+|++|++|+.++. .+..||||++.+++...+|++++++.||.|||+|.|.+..+ ...|.
T Consensus 1 ~~L~V~vi~a~~L~~~d~--------------~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~ 64 (127)
T cd04027 1 AKISITVVCAQGLIAKDK--------------TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIK 64 (127)
T ss_pred CeEEEEEEECcCCcCCCC--------------CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEE
Confidence 478999999999998773 35689999999998899999999999999999999987533 34699
Q ss_pred EEEEECCCC-----------C-CceEEEEEeeccccccCCCCCcc
Q psy13645 156 IQLRDNDPV-----------N-NTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 156 i~v~d~d~~-----------~-d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
|+|||+|.. + +++||.+.+++.++.. ..+.|+
T Consensus 65 i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~-~~~~w~ 108 (127)
T cd04027 65 VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG-EMDVWY 108 (127)
T ss_pred EEEEECCCCcccccceeccccCCCcceEEEEEhHHccC-CCCeEE
Confidence 999999852 3 8999999999998753 233443
No 65
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.4e-16 Score=114.20 Aligned_cols=91 Identities=23% Similarity=0.426 Sum_probs=77.9
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
.|+|+|++|++|+.++. .+.+||||++.+.+. +.+|++++++.||.|||+|.|.+. +
T Consensus 1 ~L~v~Vi~a~~L~~~d~--------------~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~- 64 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI--------------FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-P- 64 (133)
T ss_pred CEEEEEEEeECCCcccC--------------CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-C-
Confidence 37899999999998773 356899999999764 579999999999999999999974 2
Q ss_pred CCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
....|.|+|||++..+ +++||++.+++.++....
T Consensus 65 ~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 99 (133)
T cd04033 65 REHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTET 99 (133)
T ss_pred CCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcC
Confidence 2346999999999987 999999999999987654
No 66
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=6e-17 Score=116.12 Aligned_cols=91 Identities=27% Similarity=0.447 Sum_probs=77.8
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|++|++|+.++. .+..||||++.+.+ .+.+|++++++.||.|||+|.|.+..+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~--------------~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDA--------------NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCC--------------CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 45789999999999998874 35689999999864 267999999999999999999997544
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.+. ..|.|+|||++..+ +++||.+.+++..
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 333 46999999999887 9999999999975
No 67
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.70 E-value=1.8e-16 Score=114.34 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=80.9
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC----CeeeeeeeecCCCCCccccEEEEEeeCCC----
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA----GLTGKTSVKKNSYNPVWNEQIIFSEMFPP---- 149 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~nP~wne~~~f~~~~p~---- 149 (191)
|+|+|++|++|+.+ . .+..||||++.+. +...+|++++++.||.|||.|.|.+..+.
T Consensus 1 L~V~Vi~A~~L~~~-~--------------~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~ 65 (137)
T cd08675 1 LSVRVLECRDLALK-S--------------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEK 65 (137)
T ss_pred CEEEEEEccCCCcc-c--------------CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccc
Confidence 57899999999876 3 3568999999998 56899999999999999999999975542
Q ss_pred ----------CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 150 ----------LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 150 ----------~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
....|.|+|||++..+ +++||++.+++.++...+. ..|++
T Consensus 66 ~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 66 KSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 2346999999999886 9999999999999875443 56655
No 68
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=3.2e-16 Score=111.23 Aligned_cols=90 Identities=27% Similarity=0.313 Sum_probs=76.9
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
.|+|+|++|++|+.++. .+.+||||++...+. ..+|++++++.||.|||+|.|.+..+ ....
T Consensus 2 ~~~V~v~~a~~L~~~~~--------------~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSS--------------NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCC--------------CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCE
Confidence 68999999999998773 467899999998653 67999999999999999999997543 3456
Q ss_pred EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
|.|+|||++..+ +++||++.++|+.+..
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~ 95 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRF 95 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHc
Confidence 999999999887 9999999999987643
No 69
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=5.3e-17 Score=116.94 Aligned_cols=90 Identities=36% Similarity=0.508 Sum_probs=76.0
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--e---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--L---TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~---~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|.|+|.+|++|+.++. .+.+||||++.+.+ . +.+|++++++.||.|||+|.|.+....
T Consensus 14 ~~~L~V~vi~a~~L~~~d~--------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDV--------------SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeeCCCcccc--------------CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 4579999999999998874 36789999999853 2 578999999999999999999975433
Q ss_pred CC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.. ..|.|+|||++..+ +++||++.+++..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 32 35889999999988 9999999999988
No 70
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.69 E-value=8e-17 Score=115.90 Aligned_cols=90 Identities=24% Similarity=0.355 Sum_probs=74.1
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-C----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-G----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-~----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|.+|++|+.++. .+.+||||++.+. + ...+|++++++.||.|||.|.|.+...
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~--------------~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDM--------------SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CCCeEEEEEEEecCCCcccC--------------CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 34689999999999998874 3578999999973 2 257899999999999999999997444
Q ss_pred CCCc-eEEEEEEECCCCC-CceEEEEEeecc
Q psy13645 149 PLCS-RIKIQLRDNDPVN-NTVIGTHYIDLK 177 (191)
Q Consensus 149 ~~~~-~l~i~v~d~d~~~-d~~iG~~~l~l~ 177 (191)
.+.. .|.|+|||++..+ +++||++.+...
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc
Confidence 4443 5999999999887 999999886643
No 71
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.69 E-value=2.2e-16 Score=111.97 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=80.6
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEE-eeCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFS-EMFPP 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~-~~~p~ 149 (191)
....|.|+|.+|++|+.++. .+..||||++.+.+ .+.+|+++++ .||+|||.|.|+ +....
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~--------------~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR--------------GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CCCEEEEEEEEecCCCchhc--------------CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 34689999999999998773 46689999987744 3789999887 999999999998 43222
Q ss_pred CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645 150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
+. ..|.|+|||++..+ +++||++.++|+.+..++. .-|++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~ 121 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLT 121 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEe
Confidence 22 45999999999888 9999999999999965433 45654
No 72
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=5.7e-16 Score=109.71 Aligned_cols=89 Identities=28% Similarity=0.412 Sum_probs=76.6
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-CeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-GLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|+|+|.+|++|+.++. .+..|||+++.+. ....+|++++++.||.|||.|.|.+. . ...|.|
T Consensus 2 l~v~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~-~~~l~i 64 (123)
T cd08382 2 VRLTVLCADGLAKRDL--------------FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--P-SSIITI 64 (123)
T ss_pred eEEEEEEecCCCccCC--------------CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--C-CCEEEE
Confidence 7899999999998773 3678999999997 45889999999999999999999974 2 567999
Q ss_pred EEEECCCCC---CceEEEEEeeccccccCC
Q psy13645 157 QLRDNDPVN---NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 157 ~v~d~d~~~---d~~iG~~~l~l~~i~~~~ 183 (191)
+|||++..+ +++||++.++++++....
T Consensus 65 ~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~ 94 (123)
T cd08382 65 QVFDQKKFKKKDQGFLGCVRIRANAVLPLK 94 (123)
T ss_pred EEEECCCCCCCCCceEeEEEEEHHHccccC
Confidence 999998875 479999999999986543
No 73
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=1.5e-16 Score=114.47 Aligned_cols=91 Identities=27% Similarity=0.463 Sum_probs=76.4
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
..+.|.|.|++|++|+.++. .+.+||||++.+.+ ...+|++++++.||.|||.|.|.+...
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~ 78 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE 78 (136)
T ss_pred CCCeEEEEEEEeeCCCcccC--------------CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH
Confidence 45789999999999998774 36789999999853 267899999999999999999997543
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.+. ..|.|+|||++..+ +++||++.+++..
T Consensus 79 ~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 79 QIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred HhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence 333 35999999999988 9999999999975
No 74
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=3.1e-16 Score=111.24 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=79.7
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeec-CCCCCccccEEEEEeeCCCC---C
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKK-NSYNPVWNEQIIFSEMFPPL---C 151 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~-~~~nP~wne~~~f~~~~p~~---~ 151 (191)
+|+|+|.+|++|+..+. .+..||||++.+++ .+.+|+++. ++.||.|||.|.|.+..+.+ .
T Consensus 1 ~L~V~V~sA~~L~~~~~--------------~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~ 66 (125)
T cd04051 1 TLEITIISAEDLKNVNL--------------FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGR 66 (125)
T ss_pred CEEEEEEEcccCCCCCc--------------ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCc
Confidence 47899999999997763 35689999999998 789999986 58999999999999755432 4
Q ss_pred ceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 152 SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 152 ~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
..|.|+|||++..+ +++||++.++|.++..++.
T Consensus 67 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 67 LALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred cEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccC
Confidence 56999999999876 9999999999999976554
No 75
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=1.1e-15 Score=109.43 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=82.9
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
+.|+|+|++|++|+..+..... .+.++..+..||||++.+++. ..+|++++++.||.|||+|.|.+. ....|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~----~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l 76 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRH----AVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNL 76 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhh----cccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEE
Confidence 6799999999999877741000 000011357899999999987 469999999999999999999974 23569
Q ss_pred EEEEEECCCCC-CceEEEEEeeccccccC---CCCCccc
Q psy13645 155 KIQLRDNDPVN-NTVIGTHYIDLKNISND---GDKGKDY 189 (191)
Q Consensus 155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~---~~~g~~p 189 (191)
.|+|||++..+ ++++|++.++|+++... ..+.|+|
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~ 115 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVD 115 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEE
Confidence 99999998877 89999999999998863 2256665
No 76
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.67 E-value=1.5e-16 Score=114.28 Aligned_cols=90 Identities=33% Similarity=0.480 Sum_probs=75.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|+|+|++|++|+.++. .+..||||++.+.. .+.+|++++++.||.|||.|.|.+...
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~--------------~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~ 77 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDI--------------TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77 (134)
T ss_pred CCCEEEEEEEEeeCCCcccc--------------CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH
Confidence 45789999999999998874 36689999999842 267899999999999999999986433
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeecc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLK 177 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~ 177 (191)
... ..|.|+|||++..+ +++||.+.+++.
T Consensus 78 ~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 78 NVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 233 35999999999988 999999999987
No 77
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=7.1e-16 Score=109.73 Aligned_cols=87 Identities=30% Similarity=0.496 Sum_probs=74.7
Q ss_pred EEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC-CCceEEEEEEE
Q psy13645 82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP-LCSRIKIQLRD 160 (191)
Q Consensus 82 i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~-~~~~l~i~v~d 160 (191)
|.+|++|+. . .+..||||++.+.+.+.+|++++++.||+|||+|.|.+..+. ....|.|+|||
T Consensus 2 vi~a~~L~~-~---------------~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d 65 (127)
T cd08373 2 VVSLKNLPG-L---------------KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKD 65 (127)
T ss_pred eEEeeCCcc-c---------------CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEE
Confidence 678899986 2 356899999999999999999999999999999999986542 34569999999
Q ss_pred CCCCC-CceEEEEEeeccccccCCC
Q psy13645 161 NDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 161 ~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
++..+ +++||++.++++++..++.
T Consensus 66 ~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 66 YEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred CCCCCCCceEEEEEEEhhHcccCCc
Confidence 99887 8999999999999876544
No 78
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=2e-16 Score=114.15 Aligned_cols=93 Identities=15% Similarity=0.349 Sum_probs=77.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---e---eeeeeeecCCCCCccccEEEEEeeC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---L---TGKTSVKKNSYNPVWNEQIIFSEMF 147 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~---~~kT~~~~~~~nP~wne~~~f~~~~ 147 (191)
...+|.|+|.+|++|+.++. .+..||||++.+.+ . +.+|++++++.||+|||.|.|.+..
T Consensus 13 ~~~~L~V~VikarnL~~~~~--------------~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAM--------------NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCCeEEEEEEEecCCCcccc--------------CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 45789999999999998774 46789999999853 1 5699999999999999999999743
Q ss_pred CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645 148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS 180 (191)
Q Consensus 148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~ 180 (191)
..+. ..|.|+|||++..+ +++||++.+++....
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 2332 35999999999887 999999999887543
No 79
>PLN02223 phosphoinositide phospholipase C
Probab=99.66 E-value=1e-15 Score=129.95 Aligned_cols=133 Identities=24% Similarity=0.393 Sum_probs=97.1
Q ss_pred CCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCC-CChHHHHhhhh
Q psy13645 23 DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPK-MNSSLVANVKK 101 (191)
Q Consensus 23 ~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~-~~~~~~~~~~~ 101 (191)
..-.+|-+||++..-+.+..+..- .+.|..-+. ....|.|+|++|++++. ....
T Consensus 374 ~F~~NG~CGYVLKP~~Lr~~~~~~----------------~FdP~~~~~--~~~~L~V~Visgq~~~~~~~k~------- 428 (537)
T PLN02223 374 MFRANGGCGYVKKPDFLLNAGPSG----------------VFYPTENPV--VVKILKVKIYMGDGWIVDFKKR------- 428 (537)
T ss_pred hhccCCCCCceECChhhccCCccc----------------ccCCCCCcc--cceEEEEEEEEcccccCCcccc-------
Confidence 334478889988776665544321 011111011 24679999999999862 1100
Q ss_pred hhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEee
Q psy13645 102 AFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYID 175 (191)
Q Consensus 102 ~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~ 175 (191)
.......||||+|.+.|. +.+|++..|++||+|||+|.|++.+|+++- |+|+|+|+|..+ ++++|+..+|
T Consensus 429 ---~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAl-Lrf~V~D~D~~~~ddfiGQ~~LP 504 (537)
T PLN02223 429 ---IGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLAL-ISFEVYDYEVSTADAFCGQTCLP 504 (537)
T ss_pred ---cCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceE-EEEEEEecCCCCCCcEEEEEecc
Confidence 011345899999999875 567887778999999999999999999886 999999999877 9999999999
Q ss_pred ccccccCCC
Q psy13645 176 LKNISNDGD 184 (191)
Q Consensus 176 l~~i~~~~~ 184 (191)
++.|+.|-+
T Consensus 505 v~~Lr~GyR 513 (537)
T PLN02223 505 VSELIEGIR 513 (537)
T ss_pred hHHhcCCce
Confidence 999988754
No 80
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=5e-16 Score=111.82 Aligned_cols=92 Identities=33% Similarity=0.504 Sum_probs=76.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--Ce---eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--GL---TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~---~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|.+|++|+.++. .+..||||++.+. +. +.+|++++++.||.|||.|.|.+...
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~--------------~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 13 TANRITVNIIKARNLKAMDI--------------NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc--------------CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 34689999999999998763 3668999999983 22 57899999999999999999986432
Q ss_pred CC-CceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645 149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNI 179 (191)
Q Consensus 149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i 179 (191)
.. ...|.|+|||++..+ +++||++.+++.+.
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 33 246999999999988 99999999999875
No 81
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=1.1e-15 Score=106.72 Aligned_cols=91 Identities=26% Similarity=0.486 Sum_probs=77.3
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|+|+|++|++|+.++. .+..||||++.+.+. ..+|+++.++.+|.|||+|.|.+..+ ....+.|
T Consensus 1 l~v~vi~a~~L~~~~~--------------~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADR--------------NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCC--------------CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEE
Confidence 5789999999998763 356899999999775 57999999999999999999997543 3456999
Q ss_pred EEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
+|||++..+ +++||++.+++.++..+.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~ 93 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEE 93 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCC
Confidence 999999887 999999999999987653
No 82
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=1.4e-15 Score=107.24 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=72.9
Q ss_pred EEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 82 i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
.++|++|+.++. .+.+||||++.+.+. ..+|++++++.||.|||.|.|.+..+. ...|
T Consensus 6 ~i~a~~L~~~d~--------------~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~-~~~l 70 (120)
T cd04048 6 SISCRNLLDKDV--------------LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE-VQKL 70 (120)
T ss_pred EEEccCCCCCCC--------------CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe-eeEE
Confidence 478899998774 366899999999765 489999999999999999999865433 3459
Q ss_pred EEEEEECCC----CC-CceEEEEEeeccccccCC
Q psy13645 155 KIQLRDNDP----VN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 155 ~i~v~d~d~----~~-d~~iG~~~l~l~~i~~~~ 183 (191)
.|+|||++. .+ +++||++.+++++|..+.
T Consensus 71 ~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~ 104 (120)
T cd04048 71 RFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSP 104 (120)
T ss_pred EEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCC
Confidence 999999996 66 999999999999997653
No 83
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.4e-15 Score=134.09 Aligned_cols=113 Identities=28% Similarity=0.485 Sum_probs=89.8
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhc-----C------------------------CCCCccCcEEEEEECCe-ee
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFT-----G------------------------ETKDLVDPYVQVSFAGL-TG 124 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~-----~------------------------~~~~~~dpyv~v~~~~~-~~ 124 (191)
.+.|.++|++|++||.||. +.+++.+.|. + ...+.+||||+|.+++. ..
T Consensus 13 hg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDM-FSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred ecccEEEEEEcccCCchhH-HHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 6789999999999999883 2222322221 1 01356799999999877 67
Q ss_pred eeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCcccc
Q psy13645 125 KTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 125 kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
+|++++++.||+|||+|.|.+..+ ...|.|+|||+|.+++++||++.+||+++..+.. ++|+|.
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~L 156 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPV 156 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEc
Confidence 999999999999999999997543 4579999999999998899999999999988765 677763
No 84
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.62 E-value=5.8e-15 Score=102.78 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=65.5
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
|.|.|.+|++|+ +.+||||++.+.+ .+.+|++++++.||+|||+|.|++. . ..
T Consensus 1 L~V~V~~A~~L~-------------------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~-s~ 58 (118)
T cd08686 1 LNVIVHSAQGFK-------------------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G-SQ 58 (118)
T ss_pred CEEEEEeCCCCC-------------------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C-CC
Confidence 578999999996 3379999998854 3699999999999999999999974 3 45
Q ss_pred eEEEEEEEC-------CCCC-CceEEEEEeeccc
Q psy13645 153 RIKIQLRDN-------DPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 153 ~l~i~v~d~-------d~~~-d~~iG~~~l~l~~ 178 (191)
.|.+.|||+ |..+ |+++|.+.+.|..
T Consensus 59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred EEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 799999998 3456 9999888877653
No 85
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.62 E-value=2.4e-15 Score=108.43 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
...+|.|.|.+|+||+.++ .+..||||++.+.+ .+.+|++++++.||+|||.|.|.+...
T Consensus 13 ~~~~L~V~V~~a~nL~~~~---------------~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD---------------HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CCCeEEEEEEEecCCCccc---------------CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 3568999999999998776 25589999999864 266899999999999999999997433
Q ss_pred CCC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645 149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS 180 (191)
Q Consensus 149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~ 180 (191)
.+. ..|.|+|||.+..+ +++||++.+......
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 344 46999999999877 999999999865443
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=1.6e-15 Score=108.62 Aligned_cols=99 Identities=33% Similarity=0.458 Sum_probs=79.6
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
...|.|+|++|++|+.++. .+..||||++.+.+. ..+|++++++.||.|||+|.|.+..+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 13 AERLTVVVLKARNLPPSDG--------------KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CCEEEEEEEEeeCCCCccC--------------CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 4689999999999998763 356899999998653 668999999999999999999975433
Q ss_pred C-CceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645 150 L-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 150 ~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
+ ...|.|+|||.+..+ +++||.+.+++++ ...+.+.|+
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~ 118 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWN 118 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHH
Confidence 2 346999999999876 9999999999999 333334443
No 87
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=9.8e-15 Score=105.82 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=79.5
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee-eeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
....|.|.|++|++||.++ +|||++.+++.. .+|+++.++.||.|+|+|.|... |. ..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-------------------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~-~~-~~ 67 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-------------------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNL-PP-VS 67 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-------------------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCC-Cc-cc
Confidence 4567999999999998654 799999999995 69999999999999999999853 33 35
Q ss_pred eEEEEEEECCC-C----CCceEEEEEeeccccccCCC-CCcccc
Q psy13645 153 RIKIQLRDNDP-V----NNTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 153 ~l~i~v~d~d~-~----~d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
.|.|.||+.+. . ++++||.+.|+++++..+.. ++|+|.
T Consensus 68 ~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl 111 (146)
T cd04013 68 VITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPV 111 (146)
T ss_pred EEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEe
Confidence 59999985432 2 37899999999999987555 789885
No 88
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.60 E-value=5.3e-15 Score=127.64 Aligned_cols=137 Identities=19% Similarity=0.320 Sum_probs=98.3
Q ss_pred CCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhh
Q psy13645 22 PDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKK 101 (191)
Q Consensus 22 p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~ 101 (191)
-....+|.+|||+..-+.+..+..... +.|..-.. ...+|.|+|+.+++++..... .
T Consensus 432 G~F~~NG~CGYVLKP~~Lr~~~~~~~~---------------fdP~~~~~--~~~~L~V~VisGq~~~l~~~k---~--- 488 (598)
T PLN02230 432 GMFRANGGCGYVKKPDFLMDAGPNGQD---------------FYPKDNSC--PKKTLKVKVCMGDGWLLDFKK---T--- 488 (598)
T ss_pred chhccCCCCCceECCHHhcCCCccccc---------------cCCCcCCC--cCcEEEEEEEEccCccCCCcc---c---
Confidence 344457899999887666654321100 11111001 235799999999987522110 0
Q ss_pred hhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEee
Q psy13645 102 AFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYID 175 (191)
Q Consensus 102 ~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~ 175 (191)
-.+....+||||+|.+.|. +.+|++..+++||.|||+|.|++..|+++- |+|+|+|+|... ++++|+..+|
T Consensus 489 --~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAl-lRf~V~d~d~~~~ddfiGQ~~lP 565 (598)
T PLN02230 489 --HFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELAL-LRVEVHEHDINEKDDFGGQTCLP 565 (598)
T ss_pred --cCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeE-EEEEEEECCCCCCCCEEEEEEcc
Confidence 0012345799999999874 678998889999999999999999999886 999999999876 9999999999
Q ss_pred ccccccCCC
Q psy13645 176 LKNISNDGD 184 (191)
Q Consensus 176 l~~i~~~~~ 184 (191)
+..|+.|-+
T Consensus 566 v~~Lr~GyR 574 (598)
T PLN02230 566 VSEIRQGIH 574 (598)
T ss_pred hHHhhCccc
Confidence 999987654
No 89
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.60 E-value=1.3e-14 Score=102.95 Aligned_cols=88 Identities=26% Similarity=0.440 Sum_probs=75.0
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~ 155 (191)
+|.|+|.+|+ |...+. .+..||||++.+++. ..+|++++++.+|.|||.|.|.+. ....|.
T Consensus 3 ~L~V~i~~a~-l~~~~~--------------~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~ 64 (125)
T cd04021 3 QLQITVESAK-LKSNSK--------------SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLE 64 (125)
T ss_pred eEEEEEEeeE-CCCCCc--------------CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC---CCCEEE
Confidence 6899999998 544332 356899999999988 899999999999999999999863 235699
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccC
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~ 182 (191)
|+|||++..+ +++||++.++|.++...
T Consensus 65 ~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 65 FKVWSHHTLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred EEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence 9999999987 99999999999998654
No 90
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.5e-14 Score=102.30 Aligned_cols=97 Identities=24% Similarity=0.429 Sum_probs=78.5
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....|.|+|.+|++|+..+. .+..||||++.+.+ ...+|++++++.||.|||.|.|....+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~--------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~ 78 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDA--------------NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCC--------------CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence 34689999999999997763 35689999999842 278999999999999999999963222
Q ss_pred -CC-CceEEEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645 149 -PL-CSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 149 -~~-~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~ 184 (191)
.. ...|.|+|||++..++++||++.++++++...+.
T Consensus 79 ~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred HHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcc
Confidence 22 2469999999987678899999999999976543
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.60 E-value=1.6e-14 Score=102.60 Aligned_cols=94 Identities=31% Similarity=0.530 Sum_probs=76.8
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC------CeeeeeeeecCCC-CCccccEEEEEeeCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA------GLTGKTSVKKNSY-NPVWNEQIIFSEMFP 148 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~------~~~~kT~~~~~~~-nP~wne~~~f~~~~p 148 (191)
..|+|+|++|++|+.++.. ..+..||||++++. ..+.+|+++.++. ||.|||+|.|.+..+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~ 69 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGD------------KGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP 69 (128)
T ss_pred eEEEEEEEeeecCCCCCCC------------CCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC
Confidence 4789999999999977620 13568999999984 3468999988765 999999999998766
Q ss_pred CCCceEEEEEEECCCCCCceEEEEEeeccccccC
Q psy13645 149 PLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISND 182 (191)
Q Consensus 149 ~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~ 182 (191)
.. ..|.|+|||++..++++||++.++++++..+
T Consensus 70 ~~-~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g 102 (128)
T cd00275 70 EL-AFLRFVVYDEDSGDDDFLGQACLPLDSLRQG 102 (128)
T ss_pred Ce-EEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc
Confidence 53 3599999999876789999999999998543
No 92
>KOG0169|consensus
Probab=99.60 E-value=3e-15 Score=129.67 Aligned_cols=127 Identities=26% Similarity=0.477 Sum_probs=96.5
Q ss_pred CCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCC-CCccccceEEEEEEEEecCCCC-CChHHHHhhhhhh
Q psy13645 26 AGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG-VPLERQHARFIIRIYRADGLPK-MNSSLVANVKKAF 103 (191)
Q Consensus 26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~~~~~L~v~i~~a~~L~~-~~~~~~~~~~~~~ 103 (191)
.+|.||||+..-+.+-.++. +-|.. .+. ...+|.|+|+++++++. .+..
T Consensus 585 ~NGgCGYVlKP~~L~~~~~~------------------F~P~~~~~~--~~~tL~IkI~sGq~~~~~~~~~--------- 635 (746)
T KOG0169|consen 585 ANGGCGYVLKPDFLLDSGST------------------FDPKSNLPP--VKKTLKIKIISGQGWLPDFGKT--------- 635 (746)
T ss_pred cCCCccceECcHHHcCCCCc------------------cCCCCCCCC--CCceeEEEEEecCcccCCCCCC---------
Confidence 46889998876555543333 22211 111 12389999999997653 3321
Q ss_pred cCCCCCccCcEEEEEECCe-----eeeeeee-cCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645 104 TGETKDLVDPYVQVSFAGL-----TGKTSVK-KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDL 176 (191)
Q Consensus 104 ~~~~~~~~dpyv~v~~~~~-----~~kT~~~-~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l 176 (191)
.....+||||.|++.|. +.+|+++ .|+.||.|+|+|.|++..|+++- |+|.|+|+|..+ |+|+|+.++|+
T Consensus 636 --~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAl-iRF~V~d~d~~~~ddF~GQ~tlP~ 712 (746)
T KOG0169|consen 636 --KFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELAL-IRFEVHDYDYIGKDDFIGQTTLPV 712 (746)
T ss_pred --cccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeE-EEEEEEecCCCCcccccceeeccH
Confidence 11367899999999885 7899955 56999999999999999999987 999999999998 99999999999
Q ss_pred cccccCCC
Q psy13645 177 KNISNDGD 184 (191)
Q Consensus 177 ~~i~~~~~ 184 (191)
++|..|-+
T Consensus 713 ~~L~~GyR 720 (746)
T KOG0169|consen 713 SELRQGYR 720 (746)
T ss_pred HHhhCcee
Confidence 99987644
No 93
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=1.3e-14 Score=100.56 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=71.3
Q ss_pred EEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe------eeeeeeecCCCCCccccEEEEEeeC---CCC
Q psy13645 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL------TGKTSVKKNSYNPVWNEQIIFSEMF---PPL 150 (191)
Q Consensus 80 v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------~~kT~~~~~~~nP~wne~~~f~~~~---p~~ 150 (191)
+..++|++|+.++. .+.+|||+++.+.+. ..+|++++++.||.|| +|.++... ...
T Consensus 4 ~~~i~a~~L~~~d~--------------~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~ 68 (110)
T cd04047 4 ELQFSGKKLDKKDF--------------FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY 68 (110)
T ss_pred EEEEEeCCCCCCCC--------------CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCc
Confidence 34578999998874 357899999998653 5899999999999999 67777421 122
Q ss_pred CceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645 151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~ 182 (191)
...|.|+|||++..+ +++||++.+++++|...
T Consensus 69 ~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 69 DRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 456999999999987 99999999999998743
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.58 E-value=1.1e-14 Score=95.45 Aligned_cols=81 Identities=40% Similarity=0.583 Sum_probs=71.2
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
|+|+|++|++|+..+. .+..+||+++.+.+ ...+|++++++.+|.|||+|.|++..+.... |
T Consensus 1 L~v~I~~a~~L~~~~~--------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDS--------------NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-L 65 (85)
T ss_dssp EEEEEEEEESSSSSST--------------TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-E
T ss_pred CEEEEEEEECCCCccc--------------CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-e
Confidence 6899999999997653 46789999999988 5799999999999999999999976666555 9
Q ss_pred EEEEEECCCCC-CceEEEEE
Q psy13645 155 KIQLRDNDPVN-NTVIGTHY 173 (191)
Q Consensus 155 ~i~v~d~d~~~-d~~iG~~~ 173 (191)
.|+|||++..+ +++||++.
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999988 99999874
No 95
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.57 E-value=5.2e-14 Score=101.33 Aligned_cols=90 Identities=24% Similarity=0.395 Sum_probs=73.7
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------------eeeeeeeecCCCCCcc-ccEEE
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------------LTGKTSVKKNSYNPVW-NEQII 142 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~~~nP~w-ne~~~ 142 (191)
.+.|.+++|++|+ ++. .+.+||||++.+.+ +..+|++++++.||+| ||.|.
T Consensus 2 ~~~~~~~~A~~L~-~~~--------------fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 2 SFSLSGLQARNLK-KGM--------------FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEEeCCCC-Ccc--------------CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 4678999999998 552 35689999999853 3689999999999999 99999
Q ss_pred EEeeCCCCCceEEEEEEECCCCC----CceEEEEEeeccccccCCC
Q psy13645 143 FSEMFPPLCSRIKIQLRDNDPVN----NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 143 f~~~~p~~~~~l~i~v~d~d~~~----d~~iG~~~l~l~~i~~~~~ 184 (191)
|.+. ..+.|.|+|||++..+ +++||++.++++++..++.
T Consensus 67 f~v~---~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~ 109 (137)
T cd08691 67 FVGL---PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHA 109 (137)
T ss_pred EEcC---CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccccc
Confidence 9973 2356999999976432 6899999999999976643
No 96
>PLN02952 phosphoinositide phospholipase C
Probab=99.57 E-value=2.7e-14 Score=123.47 Aligned_cols=136 Identities=21% Similarity=0.310 Sum_probs=97.4
Q ss_pred CCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhh
Q psy13645 23 DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKA 102 (191)
Q Consensus 23 ~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~ 102 (191)
....+|.+|||+..-+.+..+..... +.|..-.. ....|.|+|++|++++.....
T Consensus 434 ~F~~NG~cGYVlKP~~lr~~~~~~~~---------------fdp~~~~~--~~~~L~V~VisGq~l~lp~~~-------- 488 (599)
T PLN02952 434 MFRANGGCGYLKKPDFLMKKGFHDEV---------------FDPKKKLP--VKKTLKVKVYLGDGWRLDFSH-------- 488 (599)
T ss_pred hhccCCCCCceECCHHHcccCCcccc---------------cCCCCCCC--ccceEEEEEEECcccCCCCcc--------
Confidence 33347889999887666644321000 11111100 235799999999998632110
Q ss_pred hcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645 103 FTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDL 176 (191)
Q Consensus 103 ~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l 176 (191)
-..+....+||||+|.+.|. +.+|+++.++.||+||++|.|++..|.++. |+|+|||+|..+ ++++|++.+|+
T Consensus 489 ~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAl-lrf~V~D~D~~~~ddfiGq~~lPv 567 (599)
T PLN02952 489 THFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELAL-LRIEVREYDMSEKDDFGGQTCLPV 567 (599)
T ss_pred ccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccE-EEEEEEecCCCCCCCeEEEEEcch
Confidence 00011244699999999874 779999999999999999999999998775 999999999887 99999999999
Q ss_pred cccccCCC
Q psy13645 177 KNISNDGD 184 (191)
Q Consensus 177 ~~i~~~~~ 184 (191)
+.|..+-.
T Consensus 568 ~~Lr~GyR 575 (599)
T PLN02952 568 SELRPGIR 575 (599)
T ss_pred hHhcCCce
Confidence 99987654
No 97
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.56 E-value=7.7e-14 Score=102.15 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=61.5
Q ss_pred CCccCcEEEEEE--C---CeeeeeeeecCCCCCccccEEEEEeeCCC------C-CceEEEEEEECCCC-C-CceEEEEE
Q psy13645 108 KDLVDPYVQVSF--A---GLTGKTSVKKNSYNPVWNEQIIFSEMFPP------L-CSRIKIQLRDNDPV-N-NTVIGTHY 173 (191)
Q Consensus 108 ~~~~dpyv~v~~--~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~------~-~~~l~i~v~d~d~~-~-d~~iG~~~ 173 (191)
.+.+||||++++ . ..+.||+++++|.||+|||.|.|.+.... . ...|.|+|||.+.. + |++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 466899999997 2 23899999999999999999999974331 1 23499999999875 4 99999999
Q ss_pred eeccccccC
Q psy13645 174 IDLKNISND 182 (191)
Q Consensus 174 l~l~~i~~~ 182 (191)
++|+.+...
T Consensus 102 i~L~~l~~~ 110 (155)
T cd08690 102 VKLEPLETK 110 (155)
T ss_pred EEccccccc
Confidence 999998554
No 98
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.55 E-value=5.5e-14 Score=121.23 Aligned_cols=138 Identities=20% Similarity=0.304 Sum_probs=98.8
Q ss_pred ccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCC--CCChHHH
Q psy13645 19 LTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLP--KMNSSLV 96 (191)
Q Consensus 19 L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~--~~~~~~~ 96 (191)
|.+-....+|.+|||+..-+.+..+.... .+.|..-.. ....|+|+|+.|++++ .....
T Consensus 412 LN~G~F~~NG~cGYVLKP~~lr~~~~~~~---------------~fdp~~~~~--~~~~L~V~Visgq~~~l~~~~~~-- 472 (581)
T PLN02222 412 LMQGMFRANGGCGYIKKPDLLLKSGSDSD---------------IFDPKATLP--VKTTLRVTIYMGEGWYFDFRHTH-- 472 (581)
T ss_pred hhcchhccCCCCceEECCHHhccCCcccc---------------ccCCCCCCC--ccceEEEEEEEcccccCCCCccc--
Confidence 33444445789999988766654432100 011111000 2357999999998854 21110
Q ss_pred HhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEE
Q psy13645 97 ANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIG 170 (191)
Q Consensus 97 ~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG 170 (191)
.+....+||||+|.+.|. +.+|+++.++.||.|||+|.|++..|+++- |+|.|+|+|..+ ++++|
T Consensus 473 --------~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAl-lRf~V~d~D~~~~ddfig 543 (581)
T PLN02222 473 --------FDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELAL-LRLEVHEYDMSEKDDFGG 543 (581)
T ss_pred --------cCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeE-EEEEEEECCCCCCCcEEE
Confidence 012346899999999764 679999999999999999999999999886 999999999877 99999
Q ss_pred EEEeeccccccCCC
Q psy13645 171 THYIDLKNISNDGD 184 (191)
Q Consensus 171 ~~~l~l~~i~~~~~ 184 (191)
+..+|++.|..|-+
T Consensus 544 q~~lPv~~Lr~GyR 557 (581)
T PLN02222 544 QTCLPVWELSQGIR 557 (581)
T ss_pred EEEcchhhhhCccc
Confidence 99999999987654
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=137.21 Aligned_cols=99 Identities=16% Similarity=0.351 Sum_probs=87.1
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
.+.|+|+|.+|++|. -+ .+..||||++.+++. +.||++++++.||+|||+|+|.+..|....+
T Consensus 1979 ~G~L~V~V~~a~nl~-~~---------------~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~ 2042 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-QS---------------MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQK 2042 (2102)
T ss_pred CcceEEEEeeccccc-cc---------------cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCc
Confidence 579999999999997 22 366899999999965 8899999999999999999999888887788
Q ss_pred EEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645 154 IKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY 189 (191)
Q Consensus 154 l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p 189 (191)
|.|+|||+|..+++.+|.+.+++.++..++. .+|+|
T Consensus 2043 l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~ 2079 (2102)
T PLN03200 2043 LHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYS 2079 (2102)
T ss_pred eEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeee
Confidence 9999999999987799999999999986665 56655
No 100
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=7e-14 Score=97.22 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=67.2
Q ss_pred CCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC--
Q psy13645 108 KDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-- 184 (191)
Q Consensus 108 ~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-- 184 (191)
.|.+||||++.+++. ..+|++++++.||.|||.|.|.+..+ ....|.|+|||++..++++||.+.++|+++...+.
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 466899999999886 67999999999999999999997543 34569999999987778999999999999854322
Q ss_pred CCccc
Q psy13645 185 KGKDY 189 (191)
Q Consensus 185 ~g~~p 189 (191)
+.|+|
T Consensus 89 ~~w~~ 93 (111)
T cd04052 89 QQWFP 93 (111)
T ss_pred ceeEE
Confidence 56765
No 101
>KOG1028|consensus
Probab=99.48 E-value=1.6e-13 Score=115.55 Aligned_cols=97 Identities=25% Similarity=0.372 Sum_probs=82.8
Q ss_pred ccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 73 RQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 73 ~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
.+...|.|+|.+|.+|+.++. .+.+||||++++.+. +.+|++.++++||.|||.|.|.+....
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~--------------~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~ 229 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDR--------------GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE 229 (421)
T ss_pred ccCCEEEEEEEEecCCCcccC--------------CCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence 356789999999999999883 367999999999875 899999999999999999999964332
Q ss_pred CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
+. ..|.++|||.|+++ +++||++.++|..+....
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~ 265 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLS 265 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCccccccc
Confidence 33 46999999999998 999999999988875543
No 102
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.47 E-value=8.9e-13 Score=92.14 Aligned_cols=94 Identities=23% Similarity=0.427 Sum_probs=69.5
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIK 155 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~ 155 (191)
|+|+|++|++|+.+ +.+||||.+.+.+. ..+|+++++ .||.|||+|.|.+...... ..|.
T Consensus 2 L~v~vi~a~~l~~~-----------------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~ 63 (117)
T cd08383 2 LRLRILEAKNLPSK-----------------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLS 63 (117)
T ss_pred eEEEEEEecCCCcC-----------------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEE
Confidence 78999999999853 34799999999986 579999988 9999999999997433222 3588
Q ss_pred EEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645 156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190 (191)
Q Consensus 156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~ 190 (191)
|.+||.+... +..+|.+.+....+ .+..+.|++.
T Consensus 64 i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L 98 (117)
T cd08383 64 FYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPL 98 (117)
T ss_pred EEEEecccCCCeeEEEEEEecCcCC-CCcceeEEEC
Confidence 8889987665 66677665544333 2233677663
No 103
>PLN02228 Phosphoinositide phospholipase C
Probab=99.46 E-value=4.9e-13 Score=115.13 Aligned_cols=98 Identities=19% Similarity=0.402 Sum_probs=79.8
Q ss_pred eEEEEEEEEecCCCC--CChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCcc-ccEEEEEeeC
Q psy13645 76 ARFIIRIYRADGLPK--MNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVW-NEQIIFSEMF 147 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~--~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~w-ne~~~f~~~~ 147 (191)
..|.|+|++|++|+. .... .+.....||||+|.+.|. +.+|++++++.||.| |++|.|++..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~----------~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~ 500 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTH----------FDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRV 500 (567)
T ss_pred ceEEEEEEECCccCCCCCCCC----------CCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEc
Confidence 479999999998742 1100 011245899999998764 679999999999999 9999999999
Q ss_pred CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
|+++- |+|.|+|+|..+ ++++|+..+|+..|+.|-+
T Consensus 501 pELA~-lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 501 PELAL-LWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred CceeE-EEEEEEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 99885 999999998776 9999999999999987644
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.44 E-value=2.5e-12 Score=86.20 Aligned_cols=92 Identities=37% Similarity=0.586 Sum_probs=77.9
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l 154 (191)
|.|.|++|++|+.... ....+|||++++.+. ..+|+++.++.+|.||++|.|.+..+. ...|
T Consensus 2 l~i~i~~~~~l~~~~~--------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l 66 (101)
T smart00239 2 LTVKIISARNLPKKDK--------------KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAEL 66 (101)
T ss_pred eEEEEEEeeCCCCCCC--------------CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEE
Confidence 6789999999986542 245799999999875 899999999999999999999976554 5569
Q ss_pred EEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 155 KIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
.|+|||.+..+ +.++|.+.+++.++..+..
T Consensus 67 ~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 67 EIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 99999998877 8999999999999876554
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.42 E-value=2.4e-12 Score=91.79 Aligned_cols=96 Identities=22% Similarity=0.402 Sum_probs=77.2
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCC--CccccEEEEEeeCCCC--
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYN--PVWNEQIIFSEMFPPL-- 150 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~n--P~wne~~~f~~~~p~~-- 150 (191)
|+|.|.+|++++.++... .| ...+||||++.+.+. +.+|.++.+++| |.||+.|.|++..+..
T Consensus 2 LRViIw~~~~v~~~~~~~--------~g--~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~ 71 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNI--------TG--EKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEK 71 (133)
T ss_pred EEEEEEECcCCccccccc--------CC--ccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccc
Confidence 789999999977544310 01 125899999999873 799999999999 9999999999766332
Q ss_pred --------------------CceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 151 --------------------CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 151 --------------------~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
...|.++|||.|..+ |++||++.++|+.+..+.
T Consensus 72 ~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 72 KIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 135999999999998 999999999999987654
No 106
>PLN02270 phospholipase D alpha
Probab=99.37 E-value=5.3e-12 Score=111.61 Aligned_cols=114 Identities=22% Similarity=0.373 Sum_probs=91.0
Q ss_pred ceEEEEEEEEecCCCCCCh-HHHHhhhhhh---cCCCCCccCcEEEEEECCe-eeeeeeecCC-CCCccccEEEEEeeCC
Q psy13645 75 HARFIIRIYRADGLPKMNS-SLVANVKKAF---TGETKDLVDPYVQVSFAGL-TGKTSVKKNS-YNPVWNEQIIFSEMFP 148 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~-~~~~~~~~~~---~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~-~nP~wne~~~f~~~~p 148 (191)
++.|.++|++|++||.++. .+++++.+.+ ++..++.+||||.|.+++. ..+|+++.+. .||.|||.|..++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a-- 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA-- 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec--
Confidence 5789999999999997532 2333332221 2344567899999999987 7899999884 69999999998853
Q ss_pred CCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCcccc
Q psy13645 149 PLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 149 ~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
+....|.|+|.|.|.++.++||.+.+|.++|.++.. +||+|.
T Consensus 85 h~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~ 127 (808)
T PLN02270 85 HMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEI 127 (808)
T ss_pred cCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEec
Confidence 555679999999999998899999999999988766 888874
No 107
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.36 E-value=1.5e-11 Score=82.01 Aligned_cols=97 Identities=29% Similarity=0.452 Sum_probs=79.2
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|.|.|++|++|+.... ....+|||++.+.+ ...+|.+..++.||.||+.|.|.+... ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~--------------~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDL--------------NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCC--------------CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEE
Confidence 4688999999976432 35689999999998 789999999999999999999997542 3456999
Q ss_pred EEEECCCCC-CceEEEEEeeccccc-cCCC-CCccc
Q psy13645 157 QLRDNDPVN-NTVIGTHYIDLKNIS-NDGD-KGKDY 189 (191)
Q Consensus 157 ~v~d~d~~~-d~~iG~~~l~l~~i~-~~~~-~g~~p 189 (191)
+||+.+..+ ++++|++.+++..+. ..+. ..|+|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceec
Confidence 999998877 899999999999987 3332 56665
No 108
>KOG1028|consensus
Probab=99.34 E-value=6.7e-12 Score=105.81 Aligned_cols=137 Identities=25% Similarity=0.355 Sum_probs=94.5
Q ss_pred CCCccEEEEeEEEEEcCCCCCCCCCCC---CCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhh
Q psy13645 26 AGGPKGYLKCDISVIGKGDTVKIPQKS---EKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKA 102 (191)
Q Consensus 26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~---~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~ 102 (191)
.++..|.+.+++.-...........+. ....++..+++++.-.+.. ..+.|+|.|.+|++|+.++.
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p--~~g~ltv~v~kar~L~~~~~--------- 315 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLP--TAGRLTVVVIKARNLKSMDV--------- 315 (421)
T ss_pred cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeec--CCCeEEEEEEEecCCCcccC---------
Confidence 467778888773333222211111111 1111221246665444433 46899999999999999885
Q ss_pred hcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCc-eEEEEEEECCCCC-CceEEEEEee
Q psy13645 103 FTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS-RIKIQLRDNDPVN-NTVIGTHYID 175 (191)
Q Consensus 103 ~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~-~l~i~v~d~d~~~-d~~iG~~~l~ 175 (191)
.+..||||++.+... +.+|.+.+++.||+|||+|.|.+....+.. .|.|+|||+|.++ +++||.+.+-
T Consensus 316 -----~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 316 -----GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILG 390 (421)
T ss_pred -----CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEec
Confidence 477899999987432 789999999999999999999764333443 5999999999998 8899988776
Q ss_pred ccc
Q psy13645 176 LKN 178 (191)
Q Consensus 176 l~~ 178 (191)
...
T Consensus 391 ~~~ 393 (421)
T KOG1028|consen 391 SDS 393 (421)
T ss_pred CCC
Confidence 554
No 109
>KOG1264|consensus
Probab=99.33 E-value=6.9e-12 Score=109.44 Aligned_cols=93 Identities=24% Similarity=0.459 Sum_probs=79.2
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeee-eecCCCCCccc-cEEEEEeeCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTS-VKKNSYNPVWN-EQIIFSEMFP 148 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~-~~~~~~nP~wn-e~~~f~~~~p 148 (191)
..|.|.|+.|+.|++.. ++...|||+|.+.|. +++|+ ++.|++||+|| |.|+|.+.+|
T Consensus 1065 ~~lsv~vigaRHL~k~g---------------r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP 1129 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG---------------RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP 1129 (1267)
T ss_pred eEEEEEEeeccccccCC---------------CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC
Confidence 57899999999999543 466789999999875 55555 45679999999 9999999999
Q ss_pred CCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 149 PLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 149 ~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
..+- |+|.|+|.|..+ ..|||++++|+..|..+-+
T Consensus 1130 e~A~-lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1130 EFAF-LRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred ceEE-EEEEEecccccCCcceeeeeecchhhhhccce
Confidence 9886 999999999999 7799999999999877543
No 110
>KOG1011|consensus
Probab=99.30 E-value=3.8e-12 Score=108.97 Aligned_cols=93 Identities=26% Similarity=0.464 Sum_probs=80.4
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
..+.++++|.+|++|...|. .|.+||||.++++..+.+|+++...+||+|||.|+|.+.. ..++
T Consensus 293 wsakitltvlcaqgl~akdk--------------tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdr 356 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDK--------------TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDR 356 (1283)
T ss_pred cceeeEEeeeecccceeccc--------------CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCce
Confidence 46789999999999988774 4779999999999999999999999999999999999754 3467
Q ss_pred EEEEEEECCCC------------CCceEEEEEeeccccccC
Q psy13645 154 IKIQLRDNDPV------------NNTVIGTHYIDLKNISND 182 (191)
Q Consensus 154 l~i~v~d~d~~------------~d~~iG~~~l~l~~i~~~ 182 (191)
|+++|||.|.. +|+|+|+..|.+..+...
T Consensus 357 ikvrvwded~dlksklrqkl~resddflgqtvievrtlsge 397 (1283)
T KOG1011|consen 357 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE 397 (1283)
T ss_pred eEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccc
Confidence 99999998753 489999999998887643
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.20 E-value=4.3e-11 Score=108.07 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=85.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
+.+.|+|.+..|++|+..|. ++.+||||++.+.+. .++|+++++++||.|||++..++.+-. .+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~--------------ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~-~D 1102 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDE--------------NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV-KD 1102 (1227)
T ss_pred ccCcEEEEEeccCCCccccc--------------CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc-cc
Confidence 47889999999999998774 678999999999988 899999999999999999999986433 44
Q ss_pred eEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~ 184 (191)
.+.+.|+|||... ++.||++.++|+.+..++.
T Consensus 1103 ~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1103 VLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred eEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence 5999999999988 9999999999999987766
No 112
>KOG1031|consensus
Probab=99.16 E-value=3.7e-11 Score=102.05 Aligned_cols=103 Identities=31% Similarity=0.449 Sum_probs=87.7
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccE-EEEEeeCCCCC-ce
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQ-IIFSEMFPPLC-SR 153 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~-~~f~~~~p~~~-~~ 153 (191)
+.|.|+|..|++||-||.+ ....|.||++.+++...||.+-.+++||.||.. |.|.+...++. +.
T Consensus 3 gkl~vki~a~r~lpvmdka-------------sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdep 69 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA-------------SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEP 69 (1169)
T ss_pred CcceeEEEeccCCcccccc-------------cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCC
Confidence 4678999999999999953 466899999999999999999999999999977 88988655554 46
Q ss_pred EEEEEEECCCCC-CceEEEEEeeccccccCCC-----------CCccccC
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-----------KGKDYTY 191 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-----------~g~~p~f 191 (191)
|.|++.|+|..+ +|.||.+.+++..+.-... .||+|.|
T Consensus 70 lqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif 119 (1169)
T KOG1031|consen 70 LQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF 119 (1169)
T ss_pred eeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc
Confidence 999999999998 9999999999998743211 5999987
No 113
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.04 E-value=8.4e-10 Score=99.95 Aligned_cols=95 Identities=33% Similarity=0.567 Sum_probs=80.9
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
..+.+.|+|.+|++|...+.. -.+.+|||+.+.+.+. ..||++++++.||+|||.+..++. ...+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~------------i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~ln--s~~d 499 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDST------------INGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN--SFTD 499 (1227)
T ss_pred eeEEEEEEEeeccCccccccc------------ccCCCCceEEEEeccccCCccceeeccCCccccceEEEEec--ccCC
Confidence 467899999999999876631 1467999999998776 779999999999999999988864 6778
Q ss_pred eEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~ 182 (191)
+|.++|||.+... |+.+|++.++|..+...
T Consensus 500 ~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 500 PLNLSLYDFNSFKSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred ceeEEEEeccccCCcceeeeEEechHHhhhc
Confidence 8999999977776 99999999999887543
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.99 E-value=3.3e-09 Score=71.95 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=69.1
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI 156 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i 156 (191)
|.|+|.+++|+.-.+...+ .+..+|||.+.+++. +.+|++. .||.|||+|.|++. ....+.+
T Consensus 1 L~I~V~~~RdvdH~~~~~~-----------~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd---k~nEiel 63 (109)
T cd08689 1 LTITITSARDVDHIASPRF-----------SKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE---KNNEEEV 63 (109)
T ss_pred CEEEEEEEecCccccchhh-----------ccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec---CCcEEEE
Confidence 5789999999875553211 356899999999998 8888874 79999999999983 3556999
Q ss_pred EEEECCCCCCceEEEEEeecccccc
Q psy13645 157 QLRDNDPVNNTVIGTHYIDLKNISN 181 (191)
Q Consensus 157 ~v~d~d~~~d~~iG~~~l~l~~i~~ 181 (191)
.|||+.....-.||...+.+++|.+
T Consensus 64 ~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 64 IVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEeCCCCeecceeeehhhHHHHHH
Confidence 9999865446689999999998754
No 115
>KOG1328|consensus
Probab=98.90 E-value=6.4e-10 Score=96.47 Aligned_cols=93 Identities=23% Similarity=0.434 Sum_probs=77.6
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMF 147 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~ 147 (191)
.-+|.|-|+-|+++.+.|. +|.+||||+|.+++. ..+|+|++.|+||+|+|+|.|.+..
T Consensus 946 ~q~L~veVlhA~diipLD~--------------NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDS--------------NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred ccchhhhhhccccccccCC--------------CCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence 3456777788888887774 789999999999875 7899999999999999999999732
Q ss_pred -CCC--CceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 148 -PPL--CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 148 -p~~--~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
|+. .-.|.|+|+|+|-.+ +||-|++.+-|..+..
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 332 235999999999988 9999999999988754
No 116
>KOG2059|consensus
Probab=98.87 E-value=5.5e-09 Score=90.43 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=81.9
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
...|.|+|.+|++||..+. .+..|||+.|.+... ..+|.++.+++.|.|.|+|.|.+ |..=..
T Consensus 4 ~~sl~vki~E~knL~~~~~--------------~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i--P~~F~~ 67 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGP--------------SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI--PRTFRY 67 (800)
T ss_pred ccceeEEEeecccCCCCCC--------------CCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec--Ccceee
Confidence 3468999999999998764 477999999999887 89999999999999999999985 433345
Q ss_pred EEEEEEECCCCC-CceEEEEEeecccccc-CCCCCcc
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN-DGDKGKD 188 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~-~~~~g~~ 188 (191)
|.|=|||.| ++ |+.||.+.|.-++|.. .|.++|+
T Consensus 68 l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~ 103 (800)
T KOG2059|consen 68 LSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWF 103 (800)
T ss_pred EEEEEeccc-cccccccceeeeeHHHHhhCCCCccce
Confidence 999999999 66 9999999999888844 4557775
No 117
>KOG2059|consensus
Probab=98.73 E-value=2.4e-08 Score=86.58 Aligned_cols=129 Identities=17% Similarity=0.304 Sum_probs=89.3
Q ss_pred eehhccccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCC
Q psy13645 13 YHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMN 92 (191)
Q Consensus 13 ~~~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~ 92 (191)
...|+.|. |=|+.++++|-+.+.+.+...+.. .-+.+.++.++++-+..
T Consensus 99 ~d~W~~L~-~VD~dsEVQG~v~l~l~~~e~~~~------------------------------~~~~c~~L~~r~~~P~~ 147 (800)
T KOG2059|consen 99 KDTWFSLQ-PVDPDSEVQGKVHLELALTEAIQS------------------------------SGLVCHVLKTRQGLPII 147 (800)
T ss_pred Cccceecc-ccCCChhhceeEEEEEEeccccCC------------------------------CcchhhhhhhcccCcee
Confidence 44688884 445667899988888766543331 11122223333443333
Q ss_pred hHHHHhhhhhhcCCCCCccCcEEEEEECCee----eeeeeecCCCCCccccEEEEEeeCC---------------CCCce
Q psy13645 93 SSLVANVKKAFTGETKDLVDPYVQVSFAGLT----GKTSVKKNSYNPVWNEQIIFSEMFP---------------PLCSR 153 (191)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~~nP~wne~~~f~~~~p---------------~~~~~ 153 (191)
++..|||+++...|.. .+|++++++.+|.|+|.+.|.+..+ .+. .
T Consensus 148 ---------------~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l-~ 211 (800)
T KOG2059|consen 148 ---------------NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML-E 211 (800)
T ss_pred ---------------CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee-e
Confidence 3458999999988763 4999999999999999999998655 222 3
Q ss_pred EEEEEEE-CCCCC-CceEEEEEeeccccc-cCCCCCcc
Q psy13645 154 IKIQLRD-NDPVN-NTVIGTHYIDLKNIS-NDGDKGKD 188 (191)
Q Consensus 154 l~i~v~d-~d~~~-d~~iG~~~l~l~~i~-~~~~~g~~ 188 (191)
|++++|+ ++... ++|+|++.+++.... ..+.++|+
T Consensus 212 irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~ 249 (800)
T KOG2059|consen 212 IRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY 249 (800)
T ss_pred EEEeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence 8899998 55555 999999999998876 44445554
No 118
>KOG1265|consensus
Probab=98.66 E-value=6.2e-08 Score=85.90 Aligned_cols=121 Identities=24% Similarity=0.403 Sum_probs=93.1
Q ss_pred CCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcC
Q psy13645 26 AGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTG 105 (191)
Q Consensus 26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~ 105 (191)
.+|-+|||...-+.+.++-+.-+-.++. + .++ ..+++.|+|++++-|..++
T Consensus 669 yNG~sGYllKPdfmRrpDr~fdPFse~~-----V-------dgv----IA~t~sV~VISgqFLSdrk------------- 719 (1189)
T KOG1265|consen 669 YNGGSGYLLKPDFMRRPDRQFDPFSESP-----V-------DGV----IAATLSVTVISGQFLSDRK------------- 719 (1189)
T ss_pred ecCCccceeChHHhhCCCcCcCCcccCc-----c-------cce----EEeeEEEEEEeeeeccccc-------------
Confidence 4788899888877777776643333220 0 123 2478999999999886554
Q ss_pred CCCCccCcEEEEEECCe-------eeeeeeec-CCCCCccccE-EEEE-eeCCCCCceEEEEEEECCCCCCceEEEEEee
Q psy13645 106 ETKDLVDPYVQVSFAGL-------TGKTSVKK-NSYNPVWNEQ-IIFS-EMFPPLCSRIKIQLRDNDPVNNTVIGTHYID 175 (191)
Q Consensus 106 ~~~~~~dpyv~v~~~~~-------~~kT~~~~-~~~nP~wne~-~~f~-~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~ 175 (191)
+..||.|.+-|. .++|+++. ++.||+|+|+ |.|. +.+|+++. |+|.||+. +..+||+-.+|
T Consensus 720 -----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~-lRiavyeE---ggK~ig~RIlp 790 (1189)
T KOG1265|consen 720 -----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELAS-LRIAVYEE---GGKFIGQRILP 790 (1189)
T ss_pred -----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhh-eeeeeecc---CCceeeeeccc
Confidence 458999998763 67888886 5899999987 8887 78899987 99999997 47799999999
Q ss_pred ccccccCCC
Q psy13645 176 LKNISNDGD 184 (191)
Q Consensus 176 l~~i~~~~~ 184 (191)
+..|..+..
T Consensus 791 vd~l~~GYr 799 (1189)
T KOG1265|consen 791 VDGLNAGYR 799 (1189)
T ss_pred hhcccCcce
Confidence 999887654
No 119
>KOG1011|consensus
Probab=98.65 E-value=1.2e-07 Score=81.97 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=88.3
Q ss_pred hhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecC
Q psy13645 59 IEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKN 131 (191)
Q Consensus 59 i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~ 131 (191)
+...++..+|- ....++|.|..|.||.-.. .+.-.|||+|.+.|. +..|+...+
T Consensus 1112 vqvdlfthpgt----gehkvtvkvvaandlkwqt---------------sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn 1172 (1283)
T KOG1011|consen 1112 VQVDLFTHPGT----GEHKVTVKVVAANDLKWQT---------------SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN 1172 (1283)
T ss_pred EEEEeecCCCC----CcceEEEEEEecccccchh---------------ccccccceEEEEecCcccchhhhccccccCC
Confidence 44556666553 3467899999999998544 255689999998764 677888889
Q ss_pred CCCCccccEEEEEeeCC--CCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645 132 SYNPVWNEQIIFSEMFP--PLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 132 ~~nP~wne~~~f~~~~p--~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
++.|.+||.|+|.+... ..+..|.|.|.|+...+ |..+|-+.++|+++...|. .+|+|-
T Consensus 1173 nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1173 NWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPL 1235 (1283)
T ss_pred CcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeec
Confidence 99999999999986331 12345999999998888 9999999999999988877 568773
No 120
>PLN02352 phospholipase D epsilon
Probab=98.54 E-value=3.8e-07 Score=81.10 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=72.0
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhh-hhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCC-
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKK-AFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLC- 151 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~-~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~- 151 (191)
.++|.++|++|+-+.. .+.. ..++ ...+|||.|.+++. ..+| .+..||.|||.|..++. +..
T Consensus 9 hg~l~~~i~~~~~~~~-------~~~~~~~~~---~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~a--h~~~ 73 (758)
T PLN02352 9 HGTLEATIFDATPYTP-------PFPFNCIFL---NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCA--HPLD 73 (758)
T ss_pred ccceEEEEEEeeehhh-------ccccccccc---CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEee--eecC
Confidence 6789999999983211 1000 0111 12399999999987 6678 56669999999999964 344
Q ss_pred ceEEEEEEECCCCCCceEEEEEeeccccccCCC--CCcccc
Q psy13645 152 SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD--KGKDYT 190 (191)
Q Consensus 152 ~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~--~g~~p~ 190 (191)
..|.|+|.| +.++||.+.+|.++|..++. +||+|.
T Consensus 74 ~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~ 110 (758)
T PLN02352 74 STITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPL 110 (758)
T ss_pred CcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEc
Confidence 459999998 47799999999999988755 799874
No 121
>KOG1326|consensus
Probab=98.42 E-value=1.4e-07 Score=84.58 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=76.9
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee--eeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT--GKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
....+|.+.+|.+|.+.|. ++..||||.+.+++.. -++..+.+++||++++.|.+.+..|-..
T Consensus 612 ~~LvrVyvv~A~~L~p~D~--------------ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek- 676 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDG--------------NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEK- 676 (1105)
T ss_pred eeeEEEEEEEeeeccccCC--------------CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhh-
Confidence 3455788999999988774 6889999999999984 6778889999999999999998887544
Q ss_pred eEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.++++|||+|..+ |+.||+..++|+.
T Consensus 677 ~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 677 DLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred cceeEEEEeecccccchhhceehhhhh
Confidence 4999999999998 9999999999875
No 122
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.34 E-value=1.2e-06 Score=61.54 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=72.8
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC----CeeeeeeeecCCCCCccccEEEEEeeC----C-
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA----GLTGKTSVKKNSYNPVWNEQIIFSEMF----P- 148 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~nP~wne~~~f~~~~----p- 148 (191)
|.|.|.+|.+|+..-..+..+-.. +--...-.+++||++.+. +...+|+++..+..|.|+-.+.|++.+ .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~-l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPS-LQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcc-cccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 356778888776432211111000 000012246899999853 238899999999999999999998531 0
Q ss_pred ----CCC-----ceEEEEEEECCCC-----------CCceEEEEEeeccccccC--CCCCcccc
Q psy13645 149 ----PLC-----SRIKIQLRDNDPV-----------NNTVIGTHYIDLKNISND--GDKGKDYT 190 (191)
Q Consensus 149 ----~~~-----~~l~i~v~d~d~~-----------~d~~iG~~~l~l~~i~~~--~~~g~~p~ 190 (191)
++. ..|.++||+.... +|-.+|++.+|+.++... |=.||+|.
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 111 3499999986542 256899999999999654 44899983
No 123
>KOG1328|consensus
Probab=98.28 E-value=1e-07 Score=83.17 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=75.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------------------------------
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL------------------------------- 122 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------------------------------- 122 (191)
+..-+.|.+.+|.+|-..+. +|.+|||....+-..
T Consensus 112 P~~~l~is~~~ak~l~akd~--------------ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKl 177 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDV--------------NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKL 177 (1103)
T ss_pred CcHHHHHHHHHhcCccccCC--------------CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHH
Confidence 45667788888888876663 577899887665321
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCC------------------------------------C-
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV------------------------------------N- 165 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~------------------------------------~- 165 (191)
..-|.+.+.|+||.|+|.|.|.+..-.. +.+.+-+||+|.- .
T Consensus 178 Ikatsvk~~TLnPkW~EkF~F~IeDv~t-DqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~t 256 (1103)
T KOG1328|consen 178 IKATSVKKKTLNPKWSEKFQFTIEDVQT-DQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCT 256 (1103)
T ss_pred hhhcccccccCCcchhhheeeehhcccc-ceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccc
Confidence 2346677889999999999999754332 4599999998731 2
Q ss_pred CceEEEEEeeccccccCCCCCcc
Q psy13645 166 NTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 166 d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
|||+|++.+||++|-..|-+.||
T Consensus 257 DDFLGciNipl~EiP~~Gld~WF 279 (1103)
T KOG1328|consen 257 DDFLGCINIPLAEIPPDGLDQWF 279 (1103)
T ss_pred cccccccccchhcCCcchHHHHh
Confidence 78999999999999888777665
No 124
>KOG0905|consensus
Probab=98.23 E-value=1.3e-06 Score=79.88 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=81.1
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEe-eC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSE-MF 147 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~-~~ 147 (191)
+.++|.|.|.-|++|+-... +...||||+.++.+. +.||++++++.||.|||.+.+.- ..
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqd--------------g~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQD--------------GQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred cCceEEEEhhhhcccccccC--------------CCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence 46789999999999864331 456899999999764 88999999999999999988772 11
Q ss_pred CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645 148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT 190 (191)
Q Consensus 148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~ 190 (191)
..+. ..|.++||..+... +.++|.+.++|..+....+ -||+++
T Consensus 1588 ~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 1222 45999999998877 8999999999999865444 588764
No 125
>KOG1013|consensus
Probab=98.11 E-value=4.3e-06 Score=67.16 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=70.4
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP 148 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p 148 (191)
....+.|.+.++..|..+|. ++.+||||...+... +.+|.+.+++.+|.+|++|.+.+...
T Consensus 231 ~~~~l~vt~iRc~~l~ssDs--------------ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pg 296 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDS--------------NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPG 296 (362)
T ss_pred CCCceEEEEEEeeeeecccc--------------CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCcc
Confidence 34568889999888988885 688999999987642 78899999999999999999998655
Q ss_pred CCCc-eEEEEEEECCCCC-CceEEEEEe
Q psy13645 149 PLCS-RIKIQLRDNDPVN-NTVIGTHYI 174 (191)
Q Consensus 149 ~~~~-~l~i~v~d~d~~~-d~~iG~~~l 174 (191)
++.. .+.|+|||.+..+ .+++|-...
T Consensus 297 dLa~~kv~lsvgd~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 297 DLAYKKVALSVGDYDIGKSNDSIGGSML 324 (362)
T ss_pred chhcceEEEeecccCCCcCccCCCcccc
Confidence 5553 4999999999885 777775443
No 126
>KOG1013|consensus
Probab=98.07 E-value=5.3e-07 Score=72.25 Aligned_cols=96 Identities=25% Similarity=0.365 Sum_probs=77.3
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEe--e
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSE--M 146 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~--~ 146 (191)
...++.+++.+|++|..|+. ++..|||++..++.- +.+|++..++.||.||+...... .
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~--------------~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDI--------------NGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred hhhhcceeechhcccchhhh--------------hhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 45678899999999999986 578999999987643 67888999999999999877663 2
Q ss_pred CCCCCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 147 FPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 147 ~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
.+..+..+++.|.|.+.+. .+++|+..+++..|....
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q 194 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQ 194 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhh
Confidence 3333345889999999888 899999999988876543
No 127
>KOG1326|consensus
Probab=98.02 E-value=1.1e-06 Score=78.94 Aligned_cols=94 Identities=24% Similarity=0.317 Sum_probs=73.8
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEE-eeCCCCC-
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFS-EMFPPLC- 151 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~-~~~p~~~- 151 (191)
....+++.|++|+.|..++. .+.+|||+.+.+.++...|-++.+++||.|++.+.|. +..+.-.
T Consensus 204 ~~~~lR~yiyQar~L~a~dk--------------~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~ 269 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDK--------------DDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAH 269 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCc--------------ccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccc
Confidence 35567788888888877664 4679999999999999999999999999999999996 3322211
Q ss_pred ------ceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 152 ------SRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 152 ------~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
..+.|+|||.++.+ ++++|.......-+..
T Consensus 270 ~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~ 306 (1105)
T KOG1326|consen 270 LVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ 306 (1105)
T ss_pred hhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec
Confidence 23889999999998 9999987665444433
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.89 E-value=3e-05 Score=68.58 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=66.3
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEE-EEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYV-QVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR 153 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv-~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~ 153 (191)
.+...+++.+|+ |+. .|+|. .++++-+.++|.+.++|.||+||++..|.+. |.-...
T Consensus 53 ~~~~~~~~~~~~----~~~-----------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~-~~~~~~ 110 (644)
T PLN02964 53 SGIALLTLVGAE----MKF-----------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLE-KNGPHL 110 (644)
T ss_pred cCeEEEEeehhh----hcc-----------------CCcEEEEEEecceeeeeccccccCCcccchhhceEec-cCCcce
Confidence 456667777776 441 47765 4567777999999999999999999999874 333334
Q ss_pred EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645 154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN 181 (191)
Q Consensus 154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~ 181 (191)
.+|+|||+++.+ ++++|.+.++|.++..
T Consensus 111 ~~~~~~~~~~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 111 ARISVFETNRLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred EEEEEEecCCCCHHHhhhheeecHhhccH
Confidence 799999999998 9999999998876543
No 129
>KOG2060|consensus
Probab=97.62 E-value=3.6e-05 Score=62.94 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=77.7
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
.+.+.|-|++|++|..... .+...+|||+|++.+. +.+|+...++..|-+.+.+.|.-..
T Consensus 268 ~g~l~vEii~ar~l~~k~~-------------~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-- 332 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPG-------------SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-- 332 (405)
T ss_pred cCceeEEEEecccccccCC-------------cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--
Confidence 4578899999999975442 1457899999998653 7789999999999888888888532
Q ss_pred CCceEEEEEE-ECCCCC-CceEEEEEeeccccccCC--CCCccccC
Q psy13645 150 LCSRIKIQLR-DNDPVN-NTVIGTHYIDLKNISNDG--DKGKDYTY 191 (191)
Q Consensus 150 ~~~~l~i~v~-d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p~f 191 (191)
....|.++|| |+.++- +.|+|.+.+-+.++-.+. ..||.+-|
T Consensus 333 ~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 333 PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 3455999999 577776 789999988888875544 25776654
No 130
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.38 E-value=0.00024 Score=46.72 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=50.6
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCCCCceEEEEEeeccccccCCCCCcc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKD 188 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~~g~~ 188 (191)
.+||.+...+.||+|+|+|.|.+..-.+. ..|.|+|+.. .-+.+.||.+.+.++++...+.+.|+
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe~iG~~sL~l~s~geeE~~HW~ 101 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKRTIGECSLSLRTLSTQETDHWL 101 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccceeeEEEeecccCCHHHhhhhh
Confidence 78999999999999999999997554444 3588999983 22378999999999987665545553
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.83 E-value=0.016 Score=42.69 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=58.1
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
..++|+|.++.++...+ ..+-||++++ ++. ...|+.+. ..++.|||-+.|++....
T Consensus 8 ~~~~v~i~~~~~~~~~~-----------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~d 69 (158)
T cd08398 8 SNLRIKILCATYVNVND-----------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPD 69 (158)
T ss_pred CCeEEEEEeeccCCCCC-----------------cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhc
Confidence 36789999999886422 2477887753 454 22444444 367999999999975433
Q ss_pred CC--ceEEEEEEECCCC----C-CceEEEEEeecccc
Q psy13645 150 LC--SRIKIQLRDNDPV----N-NTVIGTHYIDLKNI 179 (191)
Q Consensus 150 ~~--~~l~i~v~d~d~~----~-d~~iG~~~l~l~~i 179 (191)
+- .+|.|+||+.... . ...+|.+.++|-+-
T Consensus 70 LPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 70 LPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred CChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 32 3599999986532 1 35799999988763
No 132
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.77 E-value=0.0092 Score=43.99 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=49.4
Q ss_pred ccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCCCC--ceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645 110 LVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN-NTVIGTHYIDLKNI 179 (191)
Q Consensus 110 ~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~~~--~~l~i~v~d~d~~~-d~~iG~~~l~l~~i 179 (191)
.++-||++++ ++. ...|+.+.-+..+.|||-+.|++....+- ..|.|+||+....+ ...+|.+.++|-+-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3566777653 343 33555555466788999999997554333 35999999987655 77999999998763
No 133
>KOG1327|consensus
Probab=96.77 E-value=0.0043 Score=53.54 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCccCcEEEEEECC---e---eeeeeeecCCCCCccccEEE-EE-eeCCCCCceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 108 KDLVDPYVQVSFAG---L---TGKTSVKKNSYNPVWNEQII-FS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 108 ~~~~dpyv~v~~~~---~---~~kT~~~~~~~nP~wne~~~-f~-~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
.+.+|||..+.--. . ..+|.+++++++|.|.+... +. +........+++.+||++..+ +++||++..++++
T Consensus 154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~ 233 (529)
T KOG1327|consen 154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE 233 (529)
T ss_pred cccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence 35689999887532 1 78999999999999965422 11 222233456999999999988 7999999999988
Q ss_pred ccc
Q psy13645 179 ISN 181 (191)
Q Consensus 179 i~~ 181 (191)
+..
T Consensus 234 ~~~ 236 (529)
T KOG1327|consen 234 LQE 236 (529)
T ss_pred hcc
Confidence 864
No 134
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.53 E-value=0.035 Score=41.48 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=58.9
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
..++|+|..+.++...+ ...+-||++. .++. ...|+...-..++.|||-+.|++....
T Consensus 8 ~~f~i~i~~~~~~~~~~----------------~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~d 71 (173)
T cd08693 8 EKFSITLHKISNLNAAE----------------RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCD 71 (173)
T ss_pred CCEEEEEEEeccCccCC----------------CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhc
Confidence 36889999999887412 2345677764 4555 335555544567999999999874422
Q ss_pred C--CceEEEEEEECCCC----------------C-CceEEEEEeecccc
Q psy13645 150 L--CSRIKIQLRDNDPV----------------N-NTVIGTHYIDLKNI 179 (191)
Q Consensus 150 ~--~~~l~i~v~d~d~~----------------~-d~~iG~~~l~l~~i 179 (191)
+ ..+|.|+||+.... + ...||.+.++|-+-
T Consensus 72 LPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 72 LPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred CChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 2 23599999985421 1 46899999887663
No 135
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.36 E-value=0.043 Score=40.10 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=57.0
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
..++|++....++...+ ....+-||+++ .++. ...|+....+.++.|||-+.|++....
T Consensus 8 ~~~~i~i~~~~~~~~~~---------------~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~ 72 (156)
T cd08380 8 FNLRIKIHGITNINLLD---------------SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISD 72 (156)
T ss_pred CCeEEEEEeeccccccC---------------CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhc
Confidence 35677777777765311 12346677765 3454 223333333468999999999864322
Q ss_pred C--CceEEEEEEECCCCC---CceEEEEEeecccc
Q psy13645 150 L--CSRIKIQLRDNDPVN---NTVIGTHYIDLKNI 179 (191)
Q Consensus 150 ~--~~~l~i~v~d~d~~~---d~~iG~~~l~l~~i 179 (191)
+ +.+|.|+||+.+..+ +..||.+.++|-+-
T Consensus 73 LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 73 LPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 2 235999999865442 57999999998764
No 136
>KOG3837|consensus
Probab=96.23 E-value=0.0031 Score=52.58 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=57.6
Q ss_pred cCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeC-CCCC---------ceEEEEEEECCCC-C-CceEEEEE
Q psy13645 111 VDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMF-PPLC---------SRIKIQLRDNDPV-N-NTVIGTHY 173 (191)
Q Consensus 111 ~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~-p~~~---------~~l~i~v~d~d~~-~-d~~iG~~~ 173 (191)
.|.||++.+.- ++.+|.+++++.+|.|.|.|.+.+.- |... .-++|++|....+ . |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 57788888742 38899999999999999999998743 2222 1299999998765 3 99999999
Q ss_pred eeccccccCCC
Q psy13645 174 IDLKNISNDGD 184 (191)
Q Consensus 174 l~l~~i~~~~~ 184 (191)
+.|..+....+
T Consensus 468 ikle~Len~ce 478 (523)
T KOG3837|consen 468 IKLEILENMCE 478 (523)
T ss_pred eeehhhhcccc
Confidence 99887765443
No 137
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.01 E-value=0.069 Score=44.15 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=67.9
Q ss_pred EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC------CC
Q psy13645 78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP------LC 151 (191)
Q Consensus 78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~------~~ 151 (191)
+.|.|.+|++.+.... -.-.+..++.|....|-.+..+..|.||.++.+.+.--. ..
T Consensus 2 ivl~i~egr~F~~~~~-----------------~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~ 64 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR-----------------HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQR 64 (340)
T ss_pred EEEEEecccCCCCCCC-----------------ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccC
Confidence 4688999999986531 355788999999999998888999999999998863211 11
Q ss_pred ceEEEEEEECC-CCC-CceEEEEEeecccc
Q psy13645 152 SRIKIQLRDND-PVN-NTVIGTHYIDLKNI 179 (191)
Q Consensus 152 ~~l~i~v~d~d-~~~-d~~iG~~~l~l~~i 179 (191)
..|++++|-.| ..+ .+.||.+.++|...
T Consensus 65 tPiKl~c~a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 65 TPIKLQCFAVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred CceEEEEEEecCCCCcceeccEEEEEcccc
Confidence 34999999988 344 88999999999998
No 138
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.15 E-value=0.11 Score=37.37 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=38.4
Q ss_pred eeeeecCC-CCCccccEEEEEeeC---CCCCceEEEEEEECCCCC-C----ceEEEEEeecccc
Q psy13645 125 KTSVKKNS-YNPVWNEQIIFSEMF---PPLCSRIKIQLRDNDPVN-N----TVIGTHYIDLKNI 179 (191)
Q Consensus 125 kT~~~~~~-~nP~wne~~~f~~~~---p~~~~~l~i~v~d~d~~~-d----~~iG~~~l~l~~i 179 (191)
.|+...-+ .++.|||.+.|++.. |. +.+|.|+||+.+... . ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr-~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPR-EARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-T-TEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCCh-hHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555544 799999999999743 43 345999999976655 4 6999999998764
No 139
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.63 E-value=0.3 Score=36.32 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=58.7
Q ss_pred eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeec--C--CCCCccccEEEEEe
Q psy13645 76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKK--N--SYNPVWNEQIIFSE 145 (191)
Q Consensus 76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~--~--~~nP~wne~~~f~~ 145 (191)
..+.|+|.++.+++.-.. ....+-||.+. .+++ ...|+... + ...+.|||-+.|++
T Consensus 8 ~~~~i~v~~~h~~~~~~~--------------~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i 73 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWV--------------QSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPI 73 (171)
T ss_pred ccEEEEEEEeecCChHHh--------------hccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECcc
Confidence 467888999998875321 12457788775 4555 23444322 1 23577999999986
Q ss_pred eCCC--CCceEEEEEEECCCCC----------CceEEEEEeecccc
Q psy13645 146 MFPP--LCSRIKIQLRDNDPVN----------NTVIGTHYIDLKNI 179 (191)
Q Consensus 146 ~~p~--~~~~l~i~v~d~d~~~----------d~~iG~~~l~l~~i 179 (191)
..-. .+.+|.|++|+....+ +..||.+.++|-+-
T Consensus 74 ~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 74 PVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred chhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 4322 2345999999865432 46899999988764
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.61 E-value=0.53 Score=35.33 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=53.4
Q ss_pred EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe---eeeeeeecCCCCCccccEEEEEeeCCCCC
Q psy13645 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLC 151 (191)
Q Consensus 77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~ 151 (191)
.++|+|.+++ .+..+. .....-||++. .++. ..+|+...-+.++.|||-+.|++....+-
T Consensus 11 ~friki~~~~-~~~~~~--------------~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP 75 (178)
T cd08399 11 KFRVKILGID-IPVLPR--------------NTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLP 75 (178)
T ss_pred CEEEEEEeec-ccCcCC--------------CCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCC
Confidence 5677777776 332221 11223566653 3444 33566665567799999999997553333
Q ss_pred --ceEEEEEEECCCC----------------C-CceEEEEEeeccc
Q psy13645 152 --SRIKIQLRDNDPV----------------N-NTVIGTHYIDLKN 178 (191)
Q Consensus 152 --~~l~i~v~d~d~~----------------~-d~~iG~~~l~l~~ 178 (191)
.+|.|+||+.... + +..||.+.+.|-+
T Consensus 76 ~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 76 KGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred hhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 3599999985211 1 4578888887765
No 141
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.44 E-value=0.5 Score=33.69 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=62.7
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee---eeeeeec-CCCCCccccEEEEEeeCCC
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT---GKTSVKK-NSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~---~kT~~~~-~~~nP~wne~~~f~~~~p~ 149 (191)
....+.+.|.+..++|... ..-+|+...+... ..|.... .+..-.||+.|.+++.+..
T Consensus 5 ~kf~~~l~i~~l~~~p~~~------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~ 66 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSSN------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYR 66 (143)
T ss_pred eeEEEEEEEEEeECcCCCC------------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEE
Confidence 4567889999999888522 2346666666552 4454443 3556889999999875422
Q ss_pred ------CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 150 ------LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 150 ------~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
.. ..+.|.|+.....+ ...+|.+.++|.+.....
T Consensus 67 ~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~ 108 (143)
T PF10358_consen 67 DKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANED 108 (143)
T ss_pred cCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcC
Confidence 11 23889999875444 358999999999987753
No 142
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=93.42 E-value=0.4 Score=36.03 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=33.2
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCCC--C--ceEEEEEeeccc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPVN--N--TVIGTHYIDLKN 178 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~~--d--~~iG~~~l~l~~ 178 (191)
...|.+...+.+|.|+|++.+.+..+... ..|.|++++..... + ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 56677777889999999999886443323 34999999865432 2 699999999987
No 143
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.20 E-value=1.5 Score=32.45 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=49.8
Q ss_pred cCcEEEEEECCe-eeeeeeec--CCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeecccc
Q psy13645 111 VDPYVQVSFAGL-TGKTSVKK--NSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI 179 (191)
Q Consensus 111 ~dpyv~v~~~~~-~~kT~~~~--~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i 179 (191)
..-|+++.+.++ ..+|+... ....-.+||.|.+.+.. .-..|.++||.....++..|+++.+|+-..
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence 356888888887 55665543 35557789999988642 234699999998875699999999987654
No 144
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.08 E-value=1.5 Score=29.45 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=34.3
Q ss_pred cCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCCCC--ceEEEEEEECC
Q psy13645 111 VDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDND 162 (191)
Q Consensus 111 ~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~~~--~~l~i~v~d~d 162 (191)
.+-||++++ ++. ...|+.+.-...+.|||-+.|++....+- .+|.|++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 467887753 554 33455444455689999999987543332 35999999853
No 145
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.92 E-value=0.97 Score=33.15 Aligned_cols=98 Identities=19% Similarity=0.383 Sum_probs=67.1
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCc--EEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC--
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDP--YVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP-- 149 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dp--yv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~-- 149 (191)
....|+++|+.++-.. +. +. .-.+..+. .+-+.+.++.++|+.+..+.+|.+++.|.|++....
T Consensus 7 ~~~yL~l~vlgGkAFl--d~-----l~-----~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~ 74 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFL--DH-----LQ-----EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFG 74 (156)
T ss_pred CceEEEEEEeCchhHh--hh-----hh-----ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccc
Confidence 4578999998876432 10 00 00022333 344567889999999999999999999999975432
Q ss_pred ----------CCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645 150 ----------LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183 (191)
Q Consensus 150 ----------~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~ 183 (191)
.++.|.+.|..-|..+ ..++|...++-..+...+
T Consensus 75 ~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 75 AGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred cccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 3355888888777666 688888888777664433
No 146
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.25 E-value=0.84 Score=34.58 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=39.4
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC--C-CceEEEEEeecc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV--N-NTVIGTHYIDLK 177 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~--~-d~~iG~~~l~l~ 177 (191)
..+|-+...+.+|.|+|++.+.+...... ..|.|+++..... . ...+|.+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 56788888899999999999886432222 2488988874332 2 367999999884
No 147
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.84 E-value=1.5 Score=33.42 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=39.6
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC----C-CceEEEEEeecc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV----N-NTVIGTHYIDLK 177 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~----~-d~~iG~~~l~l~ 177 (191)
..+|-+...+.+|.|+|++.+.+...... ..|.|+++..... . ...+|.+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 67788877899999999999886332222 3499999875322 2 357999999885
No 148
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=89.26 E-value=2.1 Score=32.19 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=39.9
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC------C-CceEEEEEeeccc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV------N-NTVIGTHYIDLKN 178 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~------~-d~~iG~~~l~l~~ 178 (191)
...|.+...+.+|.|++++-..+...-.. ..|.|++++.... . ...+|.+.+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 56777888899999999998875332222 2499999984321 1 3679999999754
No 149
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.47 E-value=2.5 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=37.9
Q ss_pred eeeeeecCCCCCccccEEEEEeeCCC-CCceEEEEEEECCCC-----C-CceEEEEEeeccc
Q psy13645 124 GKTSVKKNSYNPVWNEQIIFSEMFPP-LCSRIKIQLRDNDPV-----N-NTVIGTHYIDLKN 178 (191)
Q Consensus 124 ~kT~~~~~~~nP~wne~~~f~~~~p~-~~~~l~i~v~d~d~~-----~-d~~iG~~~l~l~~ 178 (191)
.-+.++....+|.|++++.+.+.... ....|.|++++.... . ...+|.+.+||-+
T Consensus 54 ~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444444489999999988863222 123499999985422 3 6789999999876
No 150
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=87.39 E-value=3.6 Score=31.08 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC---------C-CceEEEEEeeccc
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV---------N-NTVIGTHYIDLKN 178 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~---------~-d~~iG~~~l~l~~ 178 (191)
...|.+...+.+|.|++++-+.+-..-.. ..|.|++++.... + ...+|.+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 67788888889999999988775322112 2499999985421 2 4679999999866
No 151
>KOG1327|consensus
Probab=83.94 E-value=1.2 Score=38.95 Aligned_cols=59 Identities=22% Similarity=0.424 Sum_probs=47.2
Q ss_pred eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCC----C-CceEEEEEeeccccccC
Q psy13645 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV----N-NTVIGTHYIDLKNISND 182 (191)
Q Consensus 123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~----~-d~~iG~~~l~l~~i~~~ 182 (191)
..+|.++.+.+||.|-+.|.+...+..+ +.++++++|.+.. . .+|+|++...+.+|...
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~v-Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKV-QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeee-eeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 4588999999999999998887665443 4599999997654 3 78999999999887553
No 152
>KOG1329|consensus
Probab=79.73 E-value=1.8 Score=39.91 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=61.0
Q ss_pred cCcEEEEEECCe-eeeeeeecCC-CCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CC
Q psy13645 111 VDPYVQVSFAGL-TGKTSVKKNS-YNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KG 186 (191)
Q Consensus 111 ~dpyv~v~~~~~-~~kT~~~~~~-~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g 186 (191)
.++|+.+.+... -.+|....+. .+|.|.+.+.... ......+.+++-+.+..+ ...+|.+.+++..+..+.. ++
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~--~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGF--AHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccc--cccccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 488999988776 6677777776 7899999887664 345566999999998888 8999999999999988544 55
Q ss_pred ccc
Q psy13645 187 KDY 189 (191)
Q Consensus 187 ~~p 189 (191)
|+|
T Consensus 216 ~~~ 218 (887)
T KOG1329|consen 216 WFP 218 (887)
T ss_pred eee
Confidence 554
No 153
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=79.53 E-value=20 Score=25.75 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=54.6
Q ss_pred cCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCC-----------ceEEEEEEECCCCCCceEEEEEeecccc
Q psy13645 111 VDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLC-----------SRIKIQLRDNDPVNNTVIGTHYIDLKNI 179 (191)
Q Consensus 111 ~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~-----------~~l~i~v~d~d~~~d~~iG~~~l~l~~i 179 (191)
.|-|+.|.+.|+-.+|+......--.++|.|.|.-.++... +.+.++++.+.....+.++...-++++.
T Consensus 20 ~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 20 GDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPAGEILAYYEENTRDF 99 (140)
T ss_pred CCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCCCcEEEEEeccccce
Confidence 57899999999999999887777777899999985454422 4588999997765677888887777665
Q ss_pred c
Q psy13645 180 S 180 (191)
Q Consensus 180 ~ 180 (191)
.
T Consensus 100 L 100 (140)
T PF14909_consen 100 L 100 (140)
T ss_pred E
Confidence 3
No 154
>KOG1452|consensus
Probab=74.67 E-value=12 Score=30.69 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=55.0
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~ 152 (191)
..+.|.+.++.+++|.-... .++-..+-|+++...-+ +.+|.+......-.|.|.|...+.. ..
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~------------~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~ 113 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ------------QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IE 113 (442)
T ss_pred ccceEEEEEecccccccChh------------ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ce
Confidence 35789999999999974331 01334688999988776 7788888777778899998887542 22
Q ss_pred eEEEEEEECCCCC
Q psy13645 153 RIKIQLRDNDPVN 165 (191)
Q Consensus 153 ~l~i~v~d~d~~~ 165 (191)
-+.+-||.|+...
T Consensus 114 vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 114 VLHYLVYSWPPQR 126 (442)
T ss_pred eeeEEEeecCchh
Confidence 3677788877653
No 155
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=74.60 E-value=22 Score=23.79 Aligned_cols=63 Identities=13% Similarity=0.243 Sum_probs=42.3
Q ss_pred cCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeecccc
Q psy13645 111 VDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI 179 (191)
Q Consensus 111 ~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i 179 (191)
.+-.+.+.+.+. ..+|.... -.+..|+|.|.+.+. .+..|.|.||-.|- ..+-|-..+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld---RsRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE---RSRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee---cccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 355666777765 66666554 357889999999974 45569999997653 33455556666663
No 156
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=64.42 E-value=9.5 Score=26.10 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=34.3
Q ss_pred EEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC------CceEEEEEEECCCCCCceEEEEEeecccccc
Q psy13645 114 YVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL------CSRIKIQLRDNDPVNNTVIGTHYIDLKNISN 181 (191)
Q Consensus 114 yv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~------~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~ 181 (191)
|+.+.+-.-...|..+..+.+|.+|-+..+.+..-.. ...+.++++..-....+.+|.+.+++..+..
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhc
Confidence 4444444443333333348999999998888753221 1349999998653336789999999998864
No 157
>KOG0906|consensus
Probab=62.16 E-value=9.1 Score=34.50 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=45.9
Q ss_pred CccCcEEEEEEC--Ce----eeeeeeecCCCCCccccEEEEEeeCCCCC--ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645 109 DLVDPYVQVSFA--GL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN-NTVIGTHYIDLKN 178 (191)
Q Consensus 109 ~~~dpyv~v~~~--~~----~~kT~~~~~~~nP~wne~~~f~~~~p~~~--~~l~i~v~d~d~~~-d~~iG~~~l~l~~ 178 (191)
..+|.|++..+- +. ..+|..+.-+..-.|||=+.+++..+++. ..+.|++||....+ ..++|..++.|..
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 345667665542 22 33444433233344999999998877665 35999999976655 7899988877653
No 158
>KOG4269|consensus
Probab=40.95 E-value=19 Score=33.75 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=42.9
Q ss_pred ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE---C--CeeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---A--GLTGKTSVKKNSYNPVWNEQIIFSEMFPP 149 (191)
Q Consensus 75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~---~--~~~~kT~~~~~~~nP~wne~~~f~~~~p~ 149 (191)
.+.+.+.+.+|..+.. ....||.... + ..+.+|+++.++..|.||++++.++.. .
T Consensus 758 ygflh~~vhsat~lkq-------------------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-s 817 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-------------------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-S 817 (1112)
T ss_pred ccceeeeecccccccc-------------------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-c
Confidence 4566777777766642 2355665433 2 238899999999999999999988632 1
Q ss_pred CCceEEEEEEECC
Q psy13645 150 LCSRIKIQLRDND 162 (191)
Q Consensus 150 ~~~~l~i~v~d~d 162 (191)
+..++..++++
T Consensus 818 --qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 818 --QSSRLEKTEKS 828 (1112)
T ss_pred --cccchhhhccc
Confidence 22445555543
No 159
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=39.54 E-value=2.3e+02 Score=23.71 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=89.9
Q ss_pred CCceeeehhccccCCCCCCCCccEEEEeEEEEEcCCCC-CCCCC--C----CCCCc-----------hhhhcccccCCCC
Q psy13645 8 GDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDT-VKIPQ--K----SEKDE-----------DDIEANLLLPEGV 69 (191)
Q Consensus 8 ~~h~~~~~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~-~~~~~--~----~~~~~-----------~~i~~~~l~~~~~ 69 (191)
.++..-.+|..|-.-+.-....+=.|++++++...... .+... . ..... +.+...+..-.+.
T Consensus 100 ~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~ 179 (340)
T PF12416_consen 100 KNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGL 179 (340)
T ss_pred cccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcccccccCccceeEEEccCCce
Confidence 34667789999988743334455668888888766542 11110 0 00000 0110001111111
Q ss_pred C------ccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCcccc--EE
Q psy13645 70 P------LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE--QI 141 (191)
Q Consensus 70 ~------~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne--~~ 141 (191)
. .......|.|++-.|++|..+-... .....+....|...++-|....|..-+...+|.+.- ..
T Consensus 180 lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~--------l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s 251 (340)
T PF12416_consen 180 LQIGPPDLCCDLFVLSVTIKFAENLEQLIPSS--------LPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERAS 251 (340)
T ss_pred EeeCCchhcCceEEEEEehhhhhhHHhhcccc--------ccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeee
Confidence 0 0224677889999999887652110 001123356788888888877777777777776642 22
Q ss_pred EEEeeC--CC------CCceEEEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645 142 IFSEMF--PP------LCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD 184 (191)
Q Consensus 142 ~f~~~~--p~------~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~ 184 (191)
.+.+.- .. ....|.|-++- ++..||.+.+++..+...+.
T Consensus 252 ~vRirSS~~~L~~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~~~ 298 (340)
T PF12416_consen 252 GVRIRSSLRVLRRYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLPKDS 298 (340)
T ss_pred EEeecccHHHHHHHHhhCCCeEEEEee----CCcEEEEEEEEhhhccCCCc
Confidence 244321 00 01235555554 46789999999999865533
No 160
>KOG0694|consensus
Probab=39.50 E-value=9.6 Score=34.44 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=41.6
Q ss_pred ccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645 110 LVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDL 176 (191)
Q Consensus 110 ~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l 176 (191)
..+||+.|.+.-. ...+.+.+.+..|.|+++|...+. ....+.|.|+...... +.....+.+..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~---~~~~~~i~v~~~~~~~~~~~~a~~~~~~ 92 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV---AGGAKNIIVLLKSPDPKALSEAQLSLQE 92 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee---cCCceEEEEEecCCcchhhHHHhHHHHH
Confidence 3678888776544 334444667999999999999964 2345888888875444 44444443333
No 161
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=37.96 E-value=86 Score=22.81 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=47.4
Q ss_pred cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---e----eeeeeee--cCCCCCccccEEEEE
Q psy13645 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---L----TGKTSVK--KNSYNPVWNEQIIFS 144 (191)
Q Consensus 74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~----~~kT~~~--~~~~nP~wne~~~f~ 144 (191)
....|.|+|-+.. |.. . ....|||+.|++-. . .+.|.+. +.+..-.||....++
T Consensus 11 g~t~l~v~Iekig-lkd--a--------------~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lq 73 (147)
T PF14186_consen 11 GMTYLSVFIEKIG-LKD--A--------------SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQ 73 (147)
T ss_dssp T--EEEEEEEEEE--TT--G--------------GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-S
T ss_pred CCceEEEEEEEEE-ECC--h--------------HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEc
Confidence 3567788877755 432 1 34579999999742 2 3445443 224445566666665
Q ss_pred ee---CCCCCceEEEEEEECCCCC--CceEEEEEeeccccccC
Q psy13645 145 EM---FPPLCSRIKIQLRDNDPVN--NTVIGTHYIDLKNISND 182 (191)
Q Consensus 145 ~~---~p~~~~~l~i~v~d~d~~~--d~~iG~~~l~l~~i~~~ 182 (191)
.. +|. ...|.|++.++.... -...|.+.+.+++|..+
T Consensus 74 tple~lp~-Gaai~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 74 TPLEKLPK-GAAIFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp S-GGGS-T-T-EEEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred CCHHHCCC-ceEEEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 32 233 334888888864433 44577788888887654
No 162
>KOG0703|consensus
Probab=37.35 E-value=13 Score=29.98 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=39.7
Q ss_pred ccccccCCceeee-------hhccccCCCCCCCCccEEEEeEEEEEcCCCC-CCCCCC--CCCCchhhhc
Q psy13645 2 KERLREGDHQFYH-------KWALLTDPDDIAGGPKGYLKCDISVIGKGDT-VKIPQK--SEKDEDDIEA 61 (191)
Q Consensus 2 ~~iy~~~~h~~~~-------~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~-~~~~~~--~~~~~~~i~~ 61 (191)
..+..+|+..++. +|+.. +.|+.-+++|+-..+..|-+ .++... ++|.+|+++.
T Consensus 17 ~~Ll~~~~N~~CADC~a~~P~WaSw------nlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~ 80 (287)
T KOG0703|consen 17 RELLREPDNKVCADCGAKGPRWASW------NLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDF 80 (287)
T ss_pred HHHHcCcccCcccccCCCCCCeEEe------ecCeEEEeecccccccccchhheeeeeeccccCHHHHHH
Confidence 4456777776665 89977 67999999999999999955 344443 3788887654
No 163
>KOG2419|consensus
Probab=35.40 E-value=7.5 Score=34.97 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.7
Q ss_pred cCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-Cc
Q psy13645 111 VDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NT 167 (191)
Q Consensus 111 ~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~ 167 (191)
.++++...++.+.++|+....+.+|+|||. .+....=.....|...+-+++.+. ++
T Consensus 305 ~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 305 DKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred CCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccccccccc
Confidence 578888899999999999999999999997 343211111223666666666554 44
No 164
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=32.64 E-value=48 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=25.0
Q ss_pred CceeeehhccccCCCC-----CCCCccEEEEeEEEEEcC
Q psy13645 9 DHQFYHKWALLTDPDD-----IAGGPKGYLKCDISVIGK 42 (191)
Q Consensus 9 ~h~~~~~W~~L~~p~~-----~~~~~~G~lk~s~~v~~~ 42 (191)
.+....+|++|.++.. -....+|.|++.+++-+.
T Consensus 96 ~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 96 DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 4567889999998863 123567999998888743
No 165
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=30.62 E-value=83 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=18.4
Q ss_pred eEEEEEEECCCCC-CceEEEEEee
Q psy13645 153 RIKIQLRDNDPVN-NTVIGTHYID 175 (191)
Q Consensus 153 ~l~i~v~d~d~~~-d~~iG~~~l~ 175 (191)
..+|++|+.+... |++++.+..+
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEEC
Confidence 3789999999855 9999987653
No 166
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=30.27 E-value=1.7e+02 Score=21.40 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=30.4
Q ss_pred CCCccccEEEEEeeC--CCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645 133 YNPVWNEQIIFSEMF--PPLCSRIKIQLRDNDPVN-NTVIGTHYIDL 176 (191)
Q Consensus 133 ~nP~wne~~~f~~~~--p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l 176 (191)
..-.||.-|.+.... +.-..+|.|+||..|..+ +.+.|...+.|
T Consensus 55 ~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 55 DVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 446688776665433 322346999999999888 88888766554
No 167
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=29.62 E-value=3.5e+02 Score=22.90 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred CcEEEEEECCeeeeeeeecCCCCC--ccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccc
Q psy13645 112 DPYVQVSFAGLTGKTSVKKNSYNP--VWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKN 178 (191)
Q Consensus 112 dpyv~v~~~~~~~kT~~~~~~~nP--~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~ 178 (191)
..|+.+..+....+|..+.-+..- .-.|.....+. ..+..|++.+|-....+...||.+.+.+..
T Consensus 75 hiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIR--QcDnTLkI~lfKKkLvkk~hIgdI~InIn~ 141 (508)
T PTZ00447 75 HIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIR--QCDETLRVDLFTTKLTKKVHIGQIKIDINA 141 (508)
T ss_pred eEEEEEEcCceEEEccccccCcCceEEEeeeeeeeee--ecCceEEEEEEeccccceeEEEEEEecccH
Confidence 568999988888888655432221 22233333332 234569999999887778889999888764
No 168
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.50 E-value=2.3e+02 Score=19.52 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=38.5
Q ss_pred CccCcEEEEEECCeee-eeeeecCCCCCcc-cc--EEEEEeeCCCCCceEEEEEEECCC--CCCceEEEEEeeccccc
Q psy13645 109 DLVDPYVQVSFAGLTG-KTSVKKNSYNPVW-NE--QIIFSEMFPPLCSRIKIQLRDNDP--VNNTVIGTHYIDLKNIS 180 (191)
Q Consensus 109 ~~~dpyv~v~~~~~~~-kT~~~~~~~nP~w-ne--~~~f~~~~p~~~~~l~i~v~d~d~--~~d~~iG~~~l~l~~i~ 180 (191)
+...||++|.-++... .+...... .... .. .+.+....+ +..-+.|++|+... ...+.+.++.+.-.-|.
T Consensus 23 ~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~-l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 23 GGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLP-LRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp SCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEE-EESEEEEEEEECETTECCCEEEEEEEEEGGGSB
T ss_pred CCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCe-EeCCEEEEEEeCCCcccccCeEEEEEEeeeeee
Confidence 5679999999888754 22222111 1111 12 223332222 23349999999763 34777888777655444
No 169
>KOG2754|consensus
Probab=24.62 E-value=2e+02 Score=24.43 Aligned_cols=51 Identities=4% Similarity=0.048 Sum_probs=25.5
Q ss_pred cEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645 139 EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190 (191)
Q Consensus 139 e~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~ 190 (191)
..+.-....|+.-.-.+|.| |+.+.| -.+--...++++.+....-+.|.|+
T Consensus 353 g~~~~~FklPDvyGvFqFkv-dY~r~GyT~l~~~~qvsvRpl~h~eYeRfIps 404 (443)
T KOG2754|consen 353 GYYSAEFKLPDVYGVFQFKV-DYRRLGYTHLYDKTQVSVRPLAHTEYERFIPS 404 (443)
T ss_pred ceEEEEEecCCeeceEEEEE-ecccccceeeeccceEeeeecccccccccccc
Confidence 33343444555443333333 444444 3334445567777766666666653
No 170
>KOG0904|consensus
Probab=21.73 E-value=2.8e+02 Score=26.54 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=23.1
Q ss_pred eeeeecCCCCCccccEEEEEeeCCCCCc--eEEEEEEE
Q psy13645 125 KTSVKKNSYNPVWNEQIIFSEMFPPLCS--RIKIQLRD 160 (191)
Q Consensus 125 kT~~~~~~~nP~wne~~~f~~~~p~~~~--~l~i~v~d 160 (191)
.|.-+.....|.||+.+.|.+..+++-. .|-|.||-
T Consensus 383 sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 383 STSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 3333444778999999999876544332 26666664
Done!