RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13645
(191 letters)
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 64.0 bits (156), Expect = 1e-13
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
+ + A +PK DP V V F KT N NPVWNE
Sbjct: 11 VIVESASNIPKTKF---------------GKPDPIVSVIFKDEKKKTKKVDNELNPVWNE 55
Query: 140 QIIFSEMFPPL--CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190
+ F PL S + I ++D + + N +IGT + LK+++ D + Y
Sbjct: 56 ILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK 109
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 60.4 bits (146), Expect = 4e-12
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
+RI A GL SL + + + L+DPY+ VS + G+TS K+ + P +N
Sbjct: 33 VRIGEAVGLQPTRWSL----RHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190
E+ + +++ + P+ + + + + + +
Sbjct: 89 EEFCAN---VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFE 138
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 59.9 bits (145), Expect = 4e-12
Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
I+I A L SL V L+DPY+ ++ G+T+ K+ + +P W+
Sbjct: 10 IKICEAVSLKPTAWSLRDAV---GPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYTY 191
++ + +I++ + + P+ + + I + + +G + +
Sbjct: 67 DEFVTDVCNG---RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 58.5 bits (142), Expect = 9e-12
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 NVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
V K G+ D DPYV++ + +T N NPVWNE F + P + +
Sbjct: 14 KVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQENVL 72
Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNI 179
+I L D + V + +GT + ++
Sbjct: 73 EITLMDANYVMDETLGTATFTVSSM 97
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 56.9 bits (137), Expect = 6e-11
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 95 LVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
L VKKA ++ + YV + + T + S P W + +F L +
Sbjct: 7 LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEI--NRLDLGL 63
Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
+++ + + +T++GT +I L+ I ++G
Sbjct: 64 TVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 95
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 53.8 bits (130), Expect = 6e-10
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
+++ +A L + F+G DP+ + +T + NP WN+
Sbjct: 17 VKVLKAADLLAAD----------FSG----KSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 140 QIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDK 185
F + +++ + D D +G I L +I +
Sbjct: 63 VFTFPI--KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN 107
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 54.1 bits (130), Expect = 9e-10
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 87 GLPKMNSSLVANVKKAFTGETKDLV---DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIF 143
G M S L V A E K PYV+V+ G + KT N+ +P W + +
Sbjct: 30 GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89
Query: 144 SEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNI 179
P+ S++ ++ + + ++ ++GT +D+
Sbjct: 90 I--VTPV-SKLHFRVWSHQTLKSDVLLGTAALDIYET 123
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 53.7 bits (129), Expect = 9e-10
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 27/126 (21%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLV--------DPYVQVSFAGLTGKTSVKKN 131
++ DG K ++ + V A + L DPYV V +T
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCA-----QGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG 58
Query: 132 SYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHY------------IDLKNI 179
+ NPVW E F RIK+++ D D + + + I+++ +
Sbjct: 59 NLNPVWEENFHFE--CHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Query: 180 SNDGDK 185
S + D
Sbjct: 117 SGEMDV 122
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 53.1 bits (128), Expect = 1e-09
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 92 NSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG----KTSVKKNSYNPVWNEQIIFSEMF 147
+ L +A T D YVQ S A TG +T++KK + W E ++
Sbjct: 25 KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 148 PPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNIS 180
L + + + LR D + ++V G + L S
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 55.3 bits (132), Expect = 2e-09
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 98 NVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
V K G+ D DPYV++ + +T N NPVWNE F P + +
Sbjct: 29 KVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVL 87
Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY 191
+I L D + V + +GT + ++ K + +
Sbjct: 88 EITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 52.3 bits (125), Expect = 4e-09
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 93 SSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152
S L VKKA ++ + YV + + T + S P W + +F L
Sbjct: 14 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEI--NRLDL 70
Query: 153 RIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
+ +++ + + +T++GT +I L+ I ++G
Sbjct: 71 GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 104
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 51.2 bits (123), Expect = 9e-09
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 22/117 (18%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSV 128
Q ++ I GL DPYV++S KT
Sbjct: 25 QDRVLLLHIIEGKGLISKQPGTC---------------DPYVKISLIPEDSRLRHQKTQT 69
Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV--NNTVIGTHYIDLKNISNDG 183
+ +P ++E F R+ + + + + +IG +K++
Sbjct: 70 VPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 51.0 bits (122), Expect = 3e-08
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSVKKN 131
+ I +A L M+ + DPYV+ S KTS+KKN
Sbjct: 153 LLTVTIIKASNLKAMDLT--------------GFSDPYVKASLISEGRRLKKRKTSIKKN 198
Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
+ NP +NE ++F + + + I + D D + N VIG
Sbjct: 199 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239
Score = 49.8 bits (119), Expect = 8e-08
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSV 128
+ ++RI +A LP +S+ DPYV++ +T V
Sbjct: 16 LYGSDQLVVRILQALDLPAKDSN--------------GFSDPYVKIYLLPDRKKKFQTKV 61
Query: 129 KKNSYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
+ + NP++NE FS + ++ + D D + + +IG +D +
Sbjct: 62 HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 121
Query: 187 KDYTY 191
+
Sbjct: 122 RPLWR 126
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 48.9 bits (117), Expect = 6e-08
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
E+Q ++ + L + E K +PYV+ KT
Sbjct: 19 EQQTQSLVVHVKECHQLAYAD-------------EAKKRSNPYVKTYLLPDKSRQGKRKT 65
Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
S+K+++ NP+++E + + L R ++ + + NT +G I + +
Sbjct: 66 SIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 48.5 bits (116), Expect = 6e-08
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 23/113 (20%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVW 137
+ + A L K + F L DP+ ++ G T KN+ +P W
Sbjct: 9 LTVLCAKNLAKKD----------FFR----LPDPFAKIVVDGSGQCHSTDTVKNTLDPKW 54
Query: 138 NEQIIFSEMFPPLCSRIKIQLRDNDPV----NNTVIGTHYIDLKNISNDGDKG 186
N+ I I + ++ + +G + IS D G
Sbjct: 55 NQHYDLYVGKT---DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG 104
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 50.2 bits (120), Expect = 6e-08
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSV 128
+ Q+ + ++ I +A LP ++ DPYV+V +T V
Sbjct: 15 DFQNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKV 60
Query: 129 KKNSYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND 182
+ + NPV+NEQ F + + + D D + + +IG + + +
Sbjct: 61 HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Score = 47.9 bits (114), Expect = 4e-07
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 23 DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRI 82
DI G K + + + +++++ + VP + + I
Sbjct: 100 HDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG---KLTVVI 156
Query: 83 YRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSVKKNSYNPVW 137
A L KM+ L DPYV++ KT++KKN+ NP +
Sbjct: 157 LEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 202
Query: 138 NEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
NE F F + + + + D D + N IG
Sbjct: 203 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 48.6 bits (116), Expect = 8e-08
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 22/122 (18%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF------AGLTGK 125
+ ++ +F I I + L + + ++V+ +
Sbjct: 39 DEKNKQFAILIIQLSNLSAL--------------LQQQDQKVNIRVAVLPCSESTTCLFR 84
Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
T S V+NE S +P L + +++ + D + +G I L + G
Sbjct: 85 TRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144
Query: 184 DK 185
++
Sbjct: 145 ER 146
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 48.6 bits (116), Expect = 8e-08
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
Q+ + ++ I +A LP ++ DPYV+V +T V +
Sbjct: 40 QNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKVHR 85
Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
+ NPV+NEQ F + L + + + + D D + + +IG + + +
Sbjct: 86 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 48.2 bits (115), Expect = 1e-07
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
H +R+ A LP S + A + +PYV++ + +T VK+
Sbjct: 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHS-------NPYVKICLLPDQKNSKQTGVKR 76
Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
+ PV+ E+ F F R + + + D D + + VIG + L +
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 48.1 bits (115), Expect = 1e-07
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 79 IIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS-VKKNSYNPVW 137
+ + A GL + F +DPYVQ++ K++ + P W
Sbjct: 13 EVVLVSAKGLEDAD----------FLN----NMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58
Query: 138 NEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
NE IF+ + +K ++ D D + +G I L+ + +G
Sbjct: 59 NETFIFT--VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 48.1 bits (115), Expect = 1e-07
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 19/73 (26%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
+ + +A LPK + L DPYV+V+ KT VKK
Sbjct: 31 TLTVVVLKARHLPKSDV--------------SGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 132 SYNPVWNEQIIFS 144
+ N V+NE +F
Sbjct: 77 TPNAVFNELFVFD 89
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 47.8 bits (114), Expect = 2e-07
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSV 128
I+ + A L M+ + ++ DPYV++ KT
Sbjct: 29 DREVLIVVVRDAKNLVPMDPNGLS--------------DPYVKLKLIPDPKSESKQKTKT 74
Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
K S NP WNE F R+ +++ D D + N +G+ + + G G
Sbjct: 75 IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
I+ I +A L M+ DPYV+V KT KK
Sbjct: 17 SIIVNIIKARNLKAMDI--------------GGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 132 SYNPVWNEQIIFS 144
+ NP++NE F
Sbjct: 63 NLNPIFNESFAFD 75
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 47.3 bits (113), Expect = 2e-07
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 24/125 (19%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
++ + I+ I A LP +PYV++ F +T
Sbjct: 17 DKVGHQLIVTILGAKDLPSRED--------------GRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 127 SVKKNSYNPVWNEQIIFSEMFPP-LCSR-IKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
K + P WN+ I+S + R ++I L D V + +G I+L+
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122
Query: 182 DGDKG 186
D +
Sbjct: 123 DDEPH 127
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 19/73 (26%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTG--KTSVKKN 131
I+ I R L M++ DP+V++ G KT +KK
Sbjct: 38 GLIVGIIRCVHLAAMDA--------------NGYSDPFVKLWLKPDMGKKAKHKTQIKKK 83
Query: 132 SYNPVWNEQIIFS 144
+ NP +NE+ +
Sbjct: 84 TLNPEFNEEFFYD 96
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 46.9 bits (112), Expect = 2e-07
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 20/122 (16%)
Query: 71 LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----K 125
E + + + A L M+ + ++ DPYV++ K
Sbjct: 11 AEVTDEKLHVTVRDAKNLIPMDPNGLS--------------DPYVKLKLIPDPKNESKQK 56
Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184
T +++ NP WNE F R+ +++ D D N +G+ + +
Sbjct: 57 TKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPA 116
Query: 185 KG 186
G
Sbjct: 117 SG 118
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 47.0 bits (112), Expect = 2e-07
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
Q+ + ++ I +A LP ++ DPYV+V +T V +
Sbjct: 32 QNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
+ NPV+NEQ F + L + + + + D D + + +IG + + +
Sbjct: 78 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 46.9 bits (111), Expect = 3e-07
Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 94 SLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPV-WNEQIIFSEMFPPLC- 151
+L+ ++K + D +V+F G + + V +N + ++E +
Sbjct: 22 ALIVHLKTVSELRGR--ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRN 79
Query: 152 SRIKIQLRD-NDPVNNTVIGTHYIDLKNISNDG 183
++IQ+ + + +N +IGT + L+ + +
Sbjct: 80 EVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN 112
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 46.6 bits (111), Expect = 3e-07
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 19/118 (16%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
+ F++ I A GLP M+ E DPY++++ KT V +
Sbjct: 20 ERKAFVVNIKEARGLPAMD-------------EQSMTSDPYIKMTILPEKKHKVKTRVLR 66
Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISNDGDK 185
+ +P ++E F + + + D + + +IG I L I K
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 47.0 bits (112), Expect = 3e-07
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
+ + I A L KM+ L DPYV++ KT++KKN
Sbjct: 26 KLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
+ NP +NE F F + + + + D D + N IG
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 46.1 bits (110), Expect = 4e-07
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 24/125 (19%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
++ + I+ I A LP +PYV++ F +T
Sbjct: 14 DKVGHQLIVTILGAKDLPSREDG--------------RPRNPYVKIYFLPDRSDKNKRRT 59
Query: 127 SVKKNSYNPVWNEQIIFSEMFPP-LCSR-IKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
K + P WN+ I+S + R ++I L D V + +G I+L+
Sbjct: 60 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 119
Query: 182 DGDKG 186
D +
Sbjct: 120 DDEPH 124
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 46.7 bits (111), Expect = 4e-07
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQV------SFAGLTGKTSVKKNSY 133
+R+ GL K + G DPYV+V + + +T K S
Sbjct: 24 VRVIAGIGLAKKD----------ILG----ASDPYVRVTLYDPMNGVLTSVQTKTIKKSL 69
Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
NP WNE+I+F P R+ ++ D + + + +G + L + + +
Sbjct: 70 NPKWNEEILFRV--HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL 121
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 45.8 bits (109), Expect = 8e-07
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG------- 124
++ ++ I RA GL M+S+ L DPYV++ L G
Sbjct: 25 DQDNSNLQCTIIRAKGLKPMDSN--------------GLADPYVKLHL--LPGASKSNKL 68
Query: 125 KTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISN 181
+T +N+ NPVWNE + + + R +++ D D N IG LK +
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL-- 126
Query: 182 DGDKGKDYTY 191
++ K++
Sbjct: 127 KANQRKNFNI 136
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 46.0 bits (109), Expect = 8e-07
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG------KTSVKKNSY 133
+++ GL K + + DPYV+V+ +T K S
Sbjct: 12 VKVIAGIGLAKKDILGAS--------------DPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNT-VIGTHYIDLKNISNDGDKG 186
NP WNE+I+F P RI ++ D + + +G + L + + +
Sbjct: 58 NPKWNEEILFR--VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRM 109
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 45.9 bits (109), Expect = 1e-06
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 71 LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGK 125
+E + + + + RA L + S K PYV+V K
Sbjct: 25 MEDKKGQLEVEVIRARSLTQKPGS-------------KSTPAPYVKVYLLENGACIAKKK 71
Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQL-RDNDPV-NNTVIGTHYIDLKNI 179
T + + + +P++ + ++F E P +++ + D + + +G I L+ +
Sbjct: 72 TRIARKTLDPLYQQSLVFDE--SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 45.1 bits (107), Expect = 1e-06
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KT 126
Q + I+ ++ L + +D DPYV++ L KT
Sbjct: 22 QRNKLIVVVHACRNLIAFS---------------EDGSDPYVRMYL--LPDKRRSGRRKT 64
Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPV---NNTVIGTHYIDLKNIS 180
V K + NPV+++ FS P + R + + ++++ + ++G + L +
Sbjct: 65 HVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE 122
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 46.4 bits (109), Expect = 2e-06
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIG 170
D Y++V F G +T V N+ NP W +++ F + +++Q+ D D ++ ++G
Sbjct: 415 DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLG 474
Query: 171 THYIDLKNISND 182
+ + ++
Sbjct: 475 SCDRSPHSGFHE 486
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 44.6 bits (106), Expect = 2e-06
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 27/116 (23%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KT 126
++ I + L + + +PYV+ L KT
Sbjct: 18 RNGTLFIMVMHIKDLVTEDGADP---------------NPYVKTYL--LPDTHKTSKRKT 60
Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNI 179
+ + + NP +NE +++S + ++QL + + N +G + LK+
Sbjct: 61 KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 43.9 bits (104), Expect = 3e-06
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 22/124 (17%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
Q + ++I +A LP + S + DP+V++ +T VK+
Sbjct: 24 QESTLTVKIMKAQELPAKDFSGTS--------------DPFVKIYLLPDKKHKLETKVKR 69
Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISNDGDKGK 187
+ NP WNE +F + + L+ D D + N IG I L + D + +
Sbjct: 70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV--DLTQMQ 127
Query: 188 DYTY 191
+
Sbjct: 128 TFWK 131
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 42.8 bits (101), Expect = 1e-05
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 31/127 (24%)
Query: 71 LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQV------------- 117
+ II I +A L +++ DP+V+V
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNN--------------GYSDPFVKVYLLPGRGQVMVVQ 58
Query: 118 -SFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHY 173
+ A +T + S NP WN+ +I+ + + +++ D D + N +G
Sbjct: 59 NASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118
Query: 174 IDLKNIS 180
IDL + S
Sbjct: 119 IDLSSTS 125
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 40.3 bits (93), Expect = 2e-04
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS------VKK 130
R +RI LPK+N +VDP V V G+ T +
Sbjct: 498 RLRVRIISGQQLPKVN------------KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITN 545
Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLRDND-------------PVNNTVIGTHYIDLK 177
N +NP W+ + F P L + ++ + D D P N+ G ++ L
Sbjct: 546 NGFNPRWDMEFEFEVTVPDL-ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLL 604
Query: 178 NISND 182
+ + D
Sbjct: 605 SKNGD 609
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 39.6 bits (91), Expect = 3e-04
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 107 TKDLVDPYVQVSFAGL--------TGKTSVKKNSYNPVWNEQIIFSE--MFPPLCS-RIK 155
++ V YV+V GL K S NS NPVW E+ E + P L S R+
Sbjct: 691 SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 750
Query: 156 IQLRDND-------PVNNTVIGTHYIDLKNISND 182
+ N P+N G H++ L + SN
Sbjct: 751 VMEEGNKFLGHRIIPINALNSGYHHLCLHSESNM 784
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 39.6 bits (91), Expect = 4e-04
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 107 TKDLVDPYVQVSFAGLTGKTS--------VKKNSYNPVWNEQIIFSE--MFPPLCS-RIK 155
+ + YV+V GL T ++ N +P ++E++ + + P L RI
Sbjct: 663 SDKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722
Query: 156 IQLRDND-------PVNNTVIGTHYIDLKNISND 182
+ + P++ G ++ L+N SN
Sbjct: 723 VSEENGKFIGHRVMPLDGIKPGYRHVPLRNESNR 756
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 38.8 bits (89), Expect = 7e-04
Identities = 20/134 (14%), Positives = 34/134 (25%), Gaps = 28/134 (20%)
Query: 66 PEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTG 124
P R + I A LP Y ++ L
Sbjct: 1 PNKDNSRRVDNVLKLWIIEARELPPKK-------------------RYYCELCLDDMLYA 41
Query: 125 KTSVKKNSY---NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV----NNTVIGTHYIDLK 177
+T+ K S W E F P + + RD+D +G + +
Sbjct: 42 RTTSKPRSASGDTVFWGEHFEF-NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVA 100
Query: 178 NISNDGDKGKDYTY 191
++ + Y
Sbjct: 101 TLAGRHFTEQWYPV 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.002
Identities = 28/216 (12%), Positives = 67/216 (31%), Gaps = 48/216 (22%)
Query: 3 ERLREGDHQFYHKW---ALLTDPDDIAGGPKGYLKC------DISVIGKGDTVKIPQKSE 53
++ E + +K+ + T+ + + Y++ D V K + V Q
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYL 138
Query: 54 K-----DEDDIEANLLLPEGVP------L-------ERQHARFIIRIY--------RADG 87
K E N+L+ +GV + + + +I+ +
Sbjct: 139 KLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 88 LPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNP-------VWNEQ 140
+ +M L+ + +T + + +++ + +K Y V N +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 141 IIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDL 176
F C +I + R V + + +
Sbjct: 258 AW--NAFNLSC-KILLTTRFKQ-VTDFLSAATTTHI 289
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 36.1 bits (82), Expect = 0.005
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 107 TKDLVDPYVQVSFAGLTG------KTSVKK-NSYNPVWNEQIIFSE--MFPPLCS-RIKI 156
+ V YV+V GL +T + NS+NPVW+E+ + P L S RI
Sbjct: 738 SDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797
Query: 157 QLRDNDPVNNTVI-------GTHYIDLKN 178
V + ++ G HY+ L+N
Sbjct: 798 FEEGGKFVGHRILPVSAIRSGYHYVCLRN 826
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.36
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 22/47 (46%)
Query: 125 KTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDP---VNNTV 168
K ++KK L + +K+ D+ P + T+
Sbjct: 19 KQALKK-------------------LQASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 0.47
Identities = 5/29 (17%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 72 ERQHARFI---IRIYRADGLPKM--NSSL 95
E+Q + + +++Y D P + +++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 29.1 bits (64), Expect = 1.1
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYN 134
+ F I + + + L + V +V+ T+ L +S +
Sbjct: 352 NNPFQITLVKGNKLNTEETVKV-HVRAGLFHGTELLCKTV----------VSSEISGKND 400
Query: 135 PVWNEQIIFSEMFP--PLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYT 190
+WNEQ+ F P +R+ + T T I+ GK +
Sbjct: 401 HIWNEQLEFDINICDLPRMARLCFAVYAVLDKVKTKKSTKTINPSKYQTIRKAGKVHY 458
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 27.1 bits (60), Expect = 4.4
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 36 DI-SVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQH--ARFIIRIYRA 85
D+ V K + + + + +DI+ +LL+ P +++ A FI ++
Sbjct: 141 DVGDVDAKAQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNF 191
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 26.3 bits (59), Expect = 6.3
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 43 GDTVKIPQKSEKDEDDIEANLLLPEGV 69
G I +E+D + ++A + + +
Sbjct: 171 GKDYDISTPAEEDVEALKAISPIRDNI 197
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.2 bits (58), Expect = 9.4
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 95 LVANVKKAFTGETKDLVDPYVQVSFAGL 122
+ ANV + K L PY V G
Sbjct: 137 VSANVDASREPRLKGLFAPYAVVVVGGE 164
>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics,
protein structure initiative, PSI-biolo unknown
function; 1.40A {Bacillus subtilis subsp}
Length = 335
Score = 25.8 bits (56), Expect = 9.5
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 43 GDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYR 84
G+ + +P + E IE LL E L+ ++ F +
Sbjct: 284 GEKLMLPVQYEPHRTQIEQGLLPFEVRELDAENLYFQSHHHH 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.410
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,085,162
Number of extensions: 178541
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 58
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)