RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13645
(191 letters)
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 59.4 bits (143), Expect = 2e-12
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 95 LVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
L VKKA ++ + YV + + T + S P W + +F L +
Sbjct: 4 LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMF--EINRLDLGL 60
Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY 191
+++ + + +T++GT +I L+ I ++G
Sbjct: 61 TVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 97
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 51.8 bits (123), Expect = 2e-09
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
I+I A L SL V L+DPY+ ++ G+T+ K+ + +P W+
Sbjct: 10 IKICEAVSLKPTAWSLRDAVGP---RPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVNNTV-IGTHYIDLKNISNDGDKGKDYTY 191
++ + ++ + + P+ + I + + +G + +
Sbjct: 67 DEFVTDVCNGRKI---ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 50.9 bits (121), Expect = 4e-09
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 71 LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----K 125
I+ + A L M+ + L DPYV++ K
Sbjct: 10 AHIDREVLIVVVRDAKNLVPMDPN--------------GLSDPYVKLKLIPDPKSESKQK 55
Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184
T K S NP WNE F R+ +++ D D + N +G+ + + G
Sbjct: 56 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 115
Query: 185 KG 186
G
Sbjct: 116 DG 117
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 49.3 bits (117), Expect = 1e-08
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 24/125 (19%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KT 126
++ + I+ I A LP +PYV++ F +T
Sbjct: 10 DKVGHQLIVTILGAKDLPSREDG--------------RPRNPYVKIYFLPDRSDKNKRRT 55
Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
K + P WN+ I+S + ++I L D V + +G I+L+
Sbjct: 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115
Query: 182 DGDKG 186
D +
Sbjct: 116 DDEPH 120
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 48.2 bits (114), Expect = 3e-08
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK------TS 127
+ R +RI LPK+N +VDP V V G+
Sbjct: 2 RPERLRVRIISGQQLPKVN------------KNKNSIVDPKVIVEIHGVGRDTGSRQTAV 49
Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181
+ N +NP W+ + F E+ P + ++ + D D + N IG I ++
Sbjct: 50 ITNNGFNPRWDMEFEF-EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 103
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 47.8 bits (113), Expect = 4e-08
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSY 133
+F + + RA + K G+ D DPYV++ + +T N
Sbjct: 4 KFTVVVLRATKVTKGAF-----------GDMLDTPDPYVELFISTTPDSRKRTRHFNNDI 52
Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYT 190
NPVWNE F + P + ++I L D + V + +GT + ++ K +
Sbjct: 53 NPVWNETFEF-ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 108
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 45.5 bits (107), Expect = 4e-07
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
+ + +A LPK + S L DPYV+V+ KT VKK
Sbjct: 16 TLTVVVLKARHLPKSDVS--------------GLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181
+ N V+NE +F L ++ + D++ + N VIG + +
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGS 113
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 44.2 bits (104), Expect = 7e-07
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 36/121 (29%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG--------KTSVKKN 131
I + L + + V YV+V GL G K S N
Sbjct: 5 ITVISGQFLSERS------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTN 46
Query: 132 SYNPVWNEQIIFSEMFP-PLCSRIKIQLRDND---------PVNNTVIGTHYIDLKNISN 181
S NPVW E+ E P + +++ + + P+N G H++ L + SN
Sbjct: 47 SINPVWKEEPFVFEKILMPELASLRVAVMEEGNKFLGHRIIPINALNSGYHHLCLHSESN 106
Query: 182 D 182
Sbjct: 107 M 107
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 44.0 bits (103), Expect = 1e-06
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSV 128
+ Q+ + ++ I +A LP ++ DPYV+V +T V
Sbjct: 30 DFQNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKV 75
Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRI-KIQLRDNDPVN-NTVIGTHYIDLKNI 179
+ + NPV+NEQ F + L + + + D D + + +IG + + +
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 41.2 bits (96), Expect = 9e-06
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSV 128
+ F++ I A GLP M+ E DPY++++ KT V
Sbjct: 18 NFERKAFVVNIKEARGLPAMD-------------EQSMTSDPYIKMTILPEKKHKVKTRV 64
Query: 129 KKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN-NTVIGTHYIDLKNI 179
+ + +P ++E F + + + D + + +IG I L I
Sbjct: 65 LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 39.4 bits (91), Expect = 4e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 21/119 (17%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK-----TSVKKN 131
I+ I R L M+++ + DP+V++ GK T +KK
Sbjct: 16 GLIVGIIRCVHLAAMDANGYS--------------DPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188
+ NP +NE+ + L + I + D D N IG + + +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 37.8 bits (87), Expect = 2e-04
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 91 MNSSLVANVKKAFTGETKDLV---DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMF 147
M S L V A E K PYV+V+ G + KT N+ +P W + +
Sbjct: 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP 63
Query: 148 PPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNI-SNDGDKGKDYTY 191
S++ ++ + + ++ ++GT +D+ ++ K ++
Sbjct: 64 ---VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 106
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 37.5 bits (86), Expect = 3e-04
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
+ + I A L KM+ L DPYV++ KT++KKN
Sbjct: 26 KLTVVILEAKNLKKMDVG--------------GLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188
+ NP +NE F F + ++ + + D D + N IG ++ + + D
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSD 130
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 36.5 bits (83), Expect = 4e-04
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 72 ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN 131
+ ++RI +A LP +S+ D + +T V +
Sbjct: 14 LYGSDQLVVRILQALDLPAKDSN-----------GFSDPYVKIYLLPDRKKKFQTKVHRK 62
Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY 189
+ NP++NE FS L R + + D D + + +IG +D + +
Sbjct: 63 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122
Query: 190 TY 191
Sbjct: 123 WR 124
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 35.1 bits (80), Expect = 0.001
Identities = 10/63 (15%), Positives = 13/63 (20%), Gaps = 8/63 (12%)
Query: 109 DLVDPYVQVSF-----AGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDP 163
D P+ V KK + P W I+I L
Sbjct: 22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE 78
Query: 164 VNN 166
Sbjct: 79 DPM 81
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 34.4 bits (78), Expect = 0.003
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
Query: 77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
+ I +A L M+ + DPYV+ S KTS+KKN
Sbjct: 21 LLTVTIIKASNLKAMDLT--------------GFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 132 SYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
+ NP +NE ++F + I + D D + N VIG + + G
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 34.5 bits (78), Expect = 0.003
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 92 NSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG----KTSVKKNSYNPVWNEQI--IFSE 145
+ L +A T D YVQ S A TG +T++KK + W E + +E
Sbjct: 25 KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 146 MFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDG 183
P + + ++V G + L S
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 33.6 bits (76), Expect = 0.004
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
+++ +A L + S DP+ + +T + NP WN+
Sbjct: 10 VKVLKAADLLAADFS--------------GKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 55
Query: 140 QIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDK 185
F + + D D + +G I L +I +
Sbjct: 56 VFTFPIKDIHDVLEVTVFDEDGDKPPD-FLGKVAIPLLSIRDGQPN 100
>d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage
RB69 [TaxId: 12353]}
Length = 118
Score = 23.9 bits (52), Expect = 8.5
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 36 DISVIGKGDTVKIPQKSEKDEDDIEAN 62
I++ K + I ++ ++ +
Sbjct: 27 TIAITNKDGKIVINGYNKVEDSGLTRP 53
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.0 bits (52), Expect = 8.7
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 33 LKCDISVI-GKGDTVKI-PQKSEKDEDDIEANLLLPEGVPLERQ---HARFIIRIYRADG 87
L C SVI G + I P K+E+ L +R+ R I
Sbjct: 22 LPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQR 81
Query: 88 LPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT 123
+ ++S++ + + + KD++ P + T
Sbjct: 82 MMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMET 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.410
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,679
Number of extensions: 35027
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 21
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)