BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1365
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2
SV=1
Length = 152
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/140 (87%), Positives = 135/140 (96%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+TNIDGKRKVMFA+TAIKG GRR+SNIVLKKADIDL+KRAGEC+EEEV+KI+TIM+NPR
Sbjct: 16 MNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKDIVDGKYSQ+ +++ LDSKLREDLERLKKIRAHRGMRHYWGLRVR
Sbjct: 76 QYKIPDWFLNRQKDIVDGKYSQL---TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2
SV=1
Length = 152
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/140 (82%), Positives = 130/140 (92%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+TNIDG+RK+MFALT+IKG GRR+SNIV KKADIDL+KRAGE S+EEV+++ITIM NPR
Sbjct: 16 MNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ++ S LD+KLREDLERLKKIRAHRG+RHYWGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVMANS---LDNKLREDLERLKKIRAHRGLRHYWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1
SV=1
Length = 152
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 111/140 (79%), Positives = 130/140 (92%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+TNIDGKRKV A+TAIKG GRR+SNIVLKKAD+DL KRAGEC+EEEVDK++TI++NP
Sbjct: 16 MNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPL 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYK+P+WFLNRQKDI+DGKY Q+ +++ LDSKLR+DLERLKKIR+HRG+RHYWGLRVR
Sbjct: 76 QYKVPNWFLNRQKDIIDGKYWQL---TSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|Q8IT98|RS18_ARGIR 40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2
SV=1
Length = 152
Score = 235 bits (599), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 130/140 (92%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+TNIDGKRK+MFA+TAIKG GRR++N+V KKAD+D+ KRAGE SE+E++++ITIM+NPR
Sbjct: 16 MNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIP+WFLNRQKD+ DGKYSQ++ + LD+KLREDLERLKKIRAHRG+RHYWGLRVR
Sbjct: 76 QYKIPNWFLNRQKDVKDGKYSQVM---SNALDNKLREDLERLKKIRAHRGLRHYWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGV+KKK
Sbjct: 133 GQHTKTTGRRGRTVGVAKKK 152
>sp|Q8JGS9|RS18_DANRE 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1
Length = 152
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/140 (77%), Positives = 129/140 (92%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDLNKRAGE +E+EV++++TIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKDI DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDIKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 129/140 (92%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL+KRAGE +E+EV++++TIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P62269|RS18_HUMAN 40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|A5JST6|RS18_CAPHI 40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|Q3T0R1|RS18_BOVIN 40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3
Length = 152
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 128/140 (91%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16 LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
QYKIPDWFLNRQKD+ DGKYSQ+L LD+KLREDLERLKKIRAHRG+RH+WGLRVR
Sbjct: 76 QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
>sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1
SV=1
Length = 152
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/140 (72%), Positives = 123/140 (87%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TN+DGK+K+MFALT+IKG GRR +NIV KKAD+D+NKRAGE S E+D ++TI+ NPR
Sbjct: 16 LNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPR 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
Q+KIPDWFLNRQKD DGKYSQ++ + LD KLR+DLERLKKIR HRG+RHYWGLRVR
Sbjct: 76 QFKIPDWFLNRQKDYKDGKYSQVV---SNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRG+TVGVSKK+
Sbjct: 133 GQHTKTTGRRGKTVGVSKKR 152
>sp|P49202|RS18_CHLRE 40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18
PE=2 SV=1
Length = 153
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 122/140 (87%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TN+DGK K+M+A+TAI+G GRRFSN+V KKA++DL K AGECS +E+++++ I+ NPR
Sbjct: 17 LNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPR 76
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
YKIPDWFLNRQKD G++SQ+ +++QLD+ +R+DLERLKKIR HRG+RHYWGLRVR
Sbjct: 77 AYKIPDWFLNRQKDHKTGRFSQL---TSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVR 133
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGR G+TVGV+KKK
Sbjct: 134 GQHTKTTGRAGKTVGVAKKK 153
>sp|O94754|RS18_SCHPO 40S ribosomal protein S18 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps18a PE=1 SV=1
Length = 152
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 119/140 (85%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TN+DGK KVMFA+T IKG GRR++NIV KKADID++KRAGE + EE+++I+TI+ NP
Sbjct: 16 LNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPS 75
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
Q+KIP WFLNRQKDI DGK Q+L + +DSKLREDLERLKKI+ HRG+RH LRVR
Sbjct: 76 QFKIPSWFLNRQKDINDGKSFQLLANN---VDSKLREDLERLKKIQTHRGLRHALDLRVR 132
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQHTKTTGRRG+TVGVSKKK
Sbjct: 133 GQHTKTTGRRGKTVGVSKKK 152
>sp|Q869U7|RS18_DICDI 40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3
SV=1
Length = 154
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 117/139 (84%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+TN+DG+RK+ +ALT +KG GRRF+N+V KKADID +KRAGE S++EV+++ TIM +PRQ
Sbjct: 19 NTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQ 78
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
Y IP WFLNRQKDI DGKYS L Q+D K REDLERLKKIRAHRG+RH++GLRVRG
Sbjct: 79 YNIPTWFLNRQKDIKDGKYSHCLAN---QIDVKFREDLERLKKIRAHRGVRHHFGLRVRG 135
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q TKTTGRRGRTVGV+ ++
Sbjct: 136 QKTKTTGRRGRTVGVAGRR 154
>sp|P0CX56|RS18B_YEAST 40S ribosomal protein S18-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18B PE=1 SV=1
Length = 146
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 108/130 (83%), Gaps = 3/130 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TN+DG K+++ALT IKG GRR+SN+V KKAD+DL+KRAGE ++EE+++I+ IM NP
Sbjct: 18 LNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPT 77
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
YKIP WFLNRQ DI DGK L + ++SKLR+DLERLKKIRAHRG+RH+WGLRVR
Sbjct: 78 HYKIPAWFLNRQNDITDGKDYHTLANN---VESKLRDDLERLKKIRAHRGIRHFWGLRVR 134
Query: 121 GQHTKTTGRR 130
GQHTKTTGRR
Sbjct: 135 GQHTKTTGRR 144
>sp|P0CX55|RS18A_YEAST 40S ribosomal protein S18-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18A PE=1 SV=1
Length = 146
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 108/130 (83%), Gaps = 3/130 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++TN+DG K+++ALT IKG GRR+SN+V KKAD+DL+KRAGE ++EE+++I+ IM NP
Sbjct: 18 LNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPT 77
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
YKIP WFLNRQ DI DGK L + ++SKLR+DLERLKKIRAHRG+RH+WGLRVR
Sbjct: 78 HYKIPAWFLNRQNDITDGKDYHTLANN---VESKLRDDLERLKKIRAHRGIRHFWGLRVR 134
Query: 121 GQHTKTTGRR 130
GQHTKTTGRR
Sbjct: 135 GQHTKTTGRR 144
>sp|P48151|RS18_ENTHI 40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2
SV=1
Length = 155
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 114/139 (82%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+TN+DG+RKV +ALT IKGCGRR++ +V K+A ID+NKRAG + E++KI+ I+T
Sbjct: 18 NTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLN 77
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
YKIP WFLNRQKD DGK SQ++ + ++++LRED+E LKK+RAHRG+RHYWGLRVRG
Sbjct: 78 YKIPVWFLNRQKDNKDGKDSQLIANA---VETRLREDIEALKKMRAHRGLRHYWGLRVRG 134
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q+TKTTGRRGRTVGVS+ K
Sbjct: 135 QNTKTTGRRGRTVGVSRTK 153
>sp|O74021|RS13_PYRHO 30S ribosomal protein S13 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps13 PE=3 SV=1
Length = 148
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 95/139 (68%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
++DG +++ +ALTAIKG G F+ +V + A +D +AG ++E+V KI I+ +P
Sbjct: 12 GVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVS 71
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+ IP W +NR KD GK ++ TA+LD +RED+ RL++IRA+RG+RH GL VRG
Sbjct: 72 HGIPRWAVNRPKDYETGKDLHLI---TAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ RRG+TVGVSKKK
Sbjct: 129 QRTRSNFRRGQTVGVSKKK 147
>sp|Q8U0E2|RS13_PYRFU 30S ribosomal protein S13 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps13 PE=1 SV=1
Length = 148
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 95/139 (68%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
++DG +++ +ALTAIKG G F+ +V + A +D +AG ++E+V KI I+ +P
Sbjct: 12 GVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVA 71
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+ IP W +NR KD G+ ++ TA+LD +RED+ RL++IRA+RG+RH GL VRG
Sbjct: 72 HGIPRWAVNRPKDYETGRDLHLI---TAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ RRG+TVGVS+KK
Sbjct: 129 QRTRSNFRRGQTVGVSRKK 147
>sp|Q9V1A0|RS13_PYRAB 30S ribosomal protein S13 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps13 PE=3 SV=1
Length = 148
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 95/139 (68%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
++DG +++ +ALTAIKG G F+ +V + A +D +AG ++E+V KI I+ +P
Sbjct: 12 GVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVA 71
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+ IP W +NR KD G+ ++ TA+LD +RED+ RL++IRA+RG+RH GL VRG
Sbjct: 72 HGIPRWAVNRPKDYETGRDLHLI---TAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRG 128
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ RRG+TVGVS+KK
Sbjct: 129 QRTRSNFRRGQTVGVSRKK 147
>sp|Q8SRP2|RS18_ENCCU 40S ribosomal protein S18 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS18 PE=1 SV=1
Length = 153
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+TNIDG +++ FALT I+G G R + + K+ IDL KRAGE E+E+ +I + +P
Sbjct: 18 NTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPAS 77
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
IP+ ++N Q+DI+DG S ++ T +LD+ LR +ER KK + R R GL+VRG
Sbjct: 78 VGIPESYMNHQRDIIDGTTSHLIGT---RLDADLRMMIERGKKNKRIRAYRLDVGLKVRG 134
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q TK+ GRRGR++GVS+KK
Sbjct: 135 QRTKSNGRRGRSMGVSRKK 153
>sp|Q5JJF1|RS13_PYRKO 30S ribosomal protein S13 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps13 PE=3 SV=1
Length = 149
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+IDG ++V +ALT IKG G F+ +VL+ A ID +AG ++E+V KI I+ +P
Sbjct: 13 GVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVA 72
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+ IP W +NR KD GK ++ TA+L RED+ RL++IRA+RG+RH GL VRG
Sbjct: 73 HGIPAWAVNRPKDYETGKDMHLI---TAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRG 129
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ R G TVGVS++K
Sbjct: 130 QRTRSNFRHGTTVGVSRRK 148
>sp|Q8TRR2|RS13_METAC 30S ribosomal protein S13 OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps13 PE=3
SV=2
Length = 162
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+T++ G + V +ALT + G GRR + ++ K A +D + G EEEV K+ T +
Sbjct: 27 MNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFE 86
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+P W LNRQKD+ G+ +L T RED+ LKK+RA+RG+RH GL+VR
Sbjct: 87 DI-VPSWMLNRQKDLATGQDKHLLGTDILL---TFREDINNLKKVRAYRGLRHERGLKVR 142
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK+TGRRG TVGVS+KK
Sbjct: 143 GQRTKSTGRRGSTVGVSRKK 162
>sp|A0B9L1|RS13_METTP 30S ribosomal protein S13 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps13 PE=3 SV=1
Length = 159
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 94/139 (67%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+T++DGK++V ALT IKG GRR + + KA +D G+ EE+++ + ++ + R
Sbjct: 20 NTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD 79
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
IP W +NR+KDI+ G ++ A++ + LREDL+ +KK R+++G+RH GLRVRG
Sbjct: 80 -NIPAWMMNRRKDIITGVDKHVM---GAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRG 135
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++TGR G TVGV++KK
Sbjct: 136 QRTRSTGRSGATVGVTRKK 154
>sp|A3DMQ3|RS13_STAMF 30S ribosomal protein S13 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps13 PE=3 SV=1
Length = 151
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 89/139 (64%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
T+IDG K ++ L IKG G + + ++ ID R G ++EE+ +I +++NP
Sbjct: 15 GTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSA 74
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
Y IP W LNR+KD V GK ++ A+L +++D+ER KKI++ RG+RH GL+VRG
Sbjct: 75 YDIPSWMLNRRKDYVTGKDMHLI---GAELIFYVKQDIEREKKIKSWRGIRHALGLKVRG 131
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T+TTGR G TVGV KK+
Sbjct: 132 QRTRTTGRLGLTVGVRKKR 150
>sp|O26141|RS13_METTH 30S ribosomal protein S13 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps13 PE=3 SV=1
Length = 149
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 4 NIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYK 63
+IDG + + ALT+IKG G+ S ++ A DLN+R G S+EE++++ + NP +Y
Sbjct: 15 DIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYN 74
Query: 64 IPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 123
IP W +NR+ D G+ ++ + L+ LREDL R++K R+++G RH GL VRGQ
Sbjct: 75 IPSWMINRRNDYETGEDKHLI---ESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQR 131
Query: 124 TKTTGRRGRTVGVSKKK 140
TK+T R+G +VGV +KK
Sbjct: 132 TKSTFRKGSSVGVRRKK 148
>sp|Q8PV19|RS13_METMA 30S ribosomal protein S13 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps13 PE=3 SV=1
Length = 162
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+T++ G + V +ALT + G GRR + ++ K A +D G +EEV K+ +
Sbjct: 27 MNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFE 86
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+ +P W LNRQKD+ G+ +L T + RED+ LKK+RA+RG+RH GL+VR
Sbjct: 87 EI-VPSWMLNRQKDLTTGQDKHLLGTD---ILLTFREDINNLKKVRAYRGLRHERGLKVR 142
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK+TGRRG TVGVS+KK
Sbjct: 143 GQRTKSTGRRGSTVGVSRKK 162
>sp|Q46GC7|RS13_METBF 30S ribosomal protein S13 OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rps13 PE=3 SV=1
Length = 162
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+T++ G + V +ALT + G GRR + ++ K A +D G +EEV K+ + N
Sbjct: 27 MNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGN-F 85
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+ +P W LNRQKD+ G+ +L T RED+ LKK+RA+RG+RH GL+VR
Sbjct: 86 EGIVPSWMLNRQKDLATGQDKHLLGTDILL---TFREDINNLKKVRAYRGLRHERGLKVR 142
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK+TGRRG TVGVS++K
Sbjct: 143 GQRTKSTGRRGSTVGVSRRK 162
>sp|Q2NFZ3|RS13_METST 30S ribosomal protein S13 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps13 PE=3 SV=1
Length = 153
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
Query: 4 NIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYK 63
++DG + ALT I+G G+ F+ + K D+D + + G +E V +I ++ NP+++
Sbjct: 16 DVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFG 75
Query: 64 IPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 123
IP+WFLNR+ D G+ ++ + L+ LR+DL R+K IR+++G RH GL VRGQ
Sbjct: 76 IPEWFLNRRNDYETGETKHLI---ESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQR 132
Query: 124 TKTTGRRGRTVGVSKKK 140
TK+T R G +VGVS+ +
Sbjct: 133 TKSTFRHGSSVGVSRTR 149
>sp|Q12ZR6|RS13_METBU 30S ribosomal protein S13 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps13 PE=3 SV=1
Length = 148
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
M+T++ GK+ V +ALT I+G G R S +++ ID N G S+E++ K+ + + +
Sbjct: 13 MNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKF 71
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+ ++P W LNRQ D + G+ +L + L+EDL LKK RA+RG+RH GL+VR
Sbjct: 72 EEQLPKWMLNRQFDPLTGENKHLL---GQDIILTLKEDLNDLKKSRAYRGLRHERGLKVR 128
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK+TGRRG T+GV KKK
Sbjct: 129 GQRTKSTGRRGSTIGVRKKK 148
>sp|Q0W1V6|RS13_UNCMA 30S ribosomal protein S13 OS=Uncultured methanogenic archaeon RC-I
GN=rps13 PE=3 SV=1
Length = 224
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+T++DG + V FALT IKG G R S I+ ++A +D + G E+VDK+ ++ N +
Sbjct: 77 NTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LE 135
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+P W LNR++DI G+ + L ++ED+ +KKIR+++G+RH G +VRG
Sbjct: 136 ANVPVWMLNRRRDIYTGEDKHLY---GVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRG 192
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q TK+TGR G TVGV +KK
Sbjct: 193 QRTKSTGRTGATVGVVRKK 211
>sp|A2BK76|RS13_HYPBU 30S ribosomal protein S13 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rps13 PE=3 SV=1
Length = 151
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
+ T+I G KV + L +KG G + + + ID NKR G ++ E++KI M NP
Sbjct: 14 LGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPL 73
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
IP W LNR+KD GK ++ A L ++ D+ER K+IR+ RG+RH GL+VR
Sbjct: 74 AIGIPVWMLNRRKDYETGKDLHLV---GADLIYYVKRDIEREKRIRSWRGIRHALGLKVR 130
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ T TTGR G T+GV K K
Sbjct: 131 GQRTATTGRIGMTIGVRKGK 150
>sp|A5UN52|RS13_METS3 30S ribosomal protein S13 OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps13 PE=3 SV=1
Length = 147
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 4 NIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYK 63
++DG + + ALT IKG G S + + D+D + G ++E+V KI I+ NP+++
Sbjct: 15 DVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFN 74
Query: 64 IPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 123
IP+W LNR++D G+ ++ + LD LR+DL R+KK R+++G RH GL VRGQ
Sbjct: 75 IPNWMLNRREDYETGENIHLI---ESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQR 131
Query: 124 TKTTGRRGRTVGVSK 138
TK+T R +VGV +
Sbjct: 132 TKSTFRNSSSVGVKR 146
>sp|Q97B96|RS13_THEVO 30S ribosomal protein S13 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps13 PE=3 SV=1
Length = 171
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+ +++G+R + AL+ +KG G R + ++ ++ K+ GE E+E++K+ + N ++
Sbjct: 36 NKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KE 94
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
Y +PDW LN +++ V GK ++ T LD +++ED+ +KKIR+++G+RH G +VRG
Sbjct: 95 YDLPDWLLNHRREPVTGKNLNLV---TTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRG 151
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ GRRG ++GV +KK
Sbjct: 152 QRTRSNGRRGLSIGVVRKK 170
>sp|Q8TVC1|RS13_METKA 30S ribosomal protein S13 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps13 PE=3 SV=1
Length = 151
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%), Gaps = 5/140 (3%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM--TNPR 60
++DG +KV +ALT IKG G R + + ++ +D K+ GE S+EE+++I + +
Sbjct: 15 VDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEG 74
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+ IP W NRQKD G+ ++ A+L+ +++D++RLKKIRA+RG+RH GL VR
Sbjct: 75 ESNIPSWMYNRQKDYETGEDMHLV---GAELEMTVKQDIDRLKKIRAYRGIRHELGLPVR 131
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK++ RRGRTVGV KK+
Sbjct: 132 GQRTKSSFRRGRTVGVKKKQ 151
>sp|P54019|RS13_METJA 30S ribosomal protein S13 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps13 PE=3 SV=2
Length = 150
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 3/138 (2%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
T++DG +K++ AL I G G + +++ A +D NK AG +EEEV KI ++ +P ++
Sbjct: 15 TDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKF 74
Query: 63 KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 122
IP W NR+KD V G+ ++ + + +ED+ RLK+IR +RG+RH GL RGQ
Sbjct: 75 GIPSWMFNRRKDYVTGEDKHVIESDLMIIK---QEDINRLKRIRCYRGIRHELGLPCRGQ 131
Query: 123 HTKTTGRRGRTVGVSKKK 140
TK+T RRG TVGVS++K
Sbjct: 132 RTKSTFRRGPTVGVSRRK 149
>sp|A3CWH6|RS13_METMJ 30S ribosomal protein S13 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps13 PE=3 SV=1
Length = 149
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+T++DG + V ALT IKG G S + A +D + G+ +E V +I + +
Sbjct: 14 NTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE 73
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
++PDW +NRQKD+ G+ +L T ++ +D+ R++K+R++RG+RH G +VRG
Sbjct: 74 -QVPDWMVNRQKDVYTGEVRHLLGTDLTMMND---DDVNRMRKMRSYRGIRHETGQKVRG 129
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q TK+TGR G TVGV +KK
Sbjct: 130 QRTKSTGRTGTTVGVKRKK 148
>sp|O27999|RS13_ARCFU 30S ribosomal protein S13 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps13 PE=3 SV=1
Length = 146
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 4/138 (2%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
T++DG + +MFALT IKG G R + ++ + +D + GE +E ++K+ + +
Sbjct: 12 TDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE- 70
Query: 63 KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 122
+P W LNR+KD G+ +L + +D D+ERL K++A+RG+RH G +VRGQ
Sbjct: 71 SLPSWLLNRRKDPYSGQDLHLL---SKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127
Query: 123 HTKTTGRRGRTVGVSKKK 140
T++TGR+GRTVGV ++K
Sbjct: 128 RTRSTGRKGRTVGVVRRK 145
>sp|Q2FT96|RS13_METHJ 30S ribosomal protein S13 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps13 PE=3 SV=1
Length = 151
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+T++DG + V+ +LT IKG GR + + + A ++ N G+ E VD+I +++N
Sbjct: 16 NTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD 75
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+IP W NR KD+ G +L A + + +D+ LKKIRA+RG+RH G +VRG
Sbjct: 76 -RIPVWMSNRPKDVYTGVKRHLL---GADVTMTVDDDINLLKKIRAYRGIRHETGQKVRG 131
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q TK+TGR G VGV +KK
Sbjct: 132 QRTKSTGRTGLIVGVKRKK 150
>sp|Q9HJD6|RS13_THEAC 30S ribosomal protein S13 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps13 PE=3 SV=1
Length = 171
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 94/139 (67%), Gaps = 4/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+ +++G+R + AL+ +KG G R ++ ++ D+ ++K+ GE EE+++K+ + ++
Sbjct: 36 NKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYVE-AKE 94
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
Y +P+W LN +++ V GK ++ T L+ +++ED+ +KKIR+++G+RH G +VRG
Sbjct: 95 YDLPEWLLNHRREPVTGKNLNLVSTD---LEIQVQEDINLMKKIRSYKGIRHEKGKKVRG 151
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T++ GR+G ++GV +KK
Sbjct: 152 QRTRSNGRKGLSIGVVRKK 170
>sp|Q9YB60|RS13_AERPE 30S ribosomal protein S13 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps13p PE=3
SV=2
Length = 150
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+IDG K+ + L +IKG G + V++ +D K+ G +EEE+ ++ ++ + Q
Sbjct: 15 GVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQ 74
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+P W NR+KD GK ++ ++L R D+ER KI + RG+RH +GL+VRG
Sbjct: 75 LGLPKWLYNRRKDYETGKDLHLI---GSELIFYARRDIEREMKIGSWRGIRHKYGLKVRG 131
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q T+TTGR G T+GV KK+
Sbjct: 132 QRTRTTGRLGMTIGVRKKR 150
>sp|Q6LXN1|RS13_METMP 30S ribosomal protein S13 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps13 PE=3 SV=1
Length = 149
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
T+++GK + +AL +KG GR + V++ ++D ++AG ++E+V KI +++ +P +
Sbjct: 15 TDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATH 74
Query: 63 KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 122
IP W NR+KD+ G ++ T L ++ED+ +KKIR ++G+RH L RGQ
Sbjct: 75 GIPSWMFNRKKDVYSGLDKHLIETD---LVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131
Query: 123 HTKTTGRRGRTVGVSKKK 140
T+ + R+G ++GV +KK
Sbjct: 132 RTRGSFRKGTSMGVKRKK 149
>sp|Q3IQT9|RS13_NATPD 30S ribosomal protein S13 OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps13 PE=3 SV=1
Length = 170
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
T++DG + V ALT + G GRR + I+ +KA++D G EE++D ++ + +Y
Sbjct: 24 TDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAV---EEY 80
Query: 63 --KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
++P+W N QKD G+ + + L R+D+ R+KKI A+RG+RH G +VR
Sbjct: 81 GDEVPEWLTNHQKDFFTGETTHEIGND---LQMSRRQDINRMKKIDAYRGVRHKRGQKVR 137
Query: 121 GQHTKTTGRRGRTVGVS 137
GQ TK+TGR T+GV+
Sbjct: 138 GQRTKSTGRTEGTIGVN 154
>sp|Q6KZP8|RS13_PICTO 30S ribosomal protein S13 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps13
PE=3 SV=1
Length = 158
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+ +++G+R + AL +KG G R S + KK D+D ++R GE E++++++ +
Sbjct: 19 NKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVY 78
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
IP W N ++DI GK ++ + LD ++ +D+ +KK+R+++G+RH GL+VRG
Sbjct: 79 DGIPYWMYNHRRDITTGKDFNLV---SNDLDLQINDDINLMKKMRSYKGIRHERGLKVRG 135
Query: 122 QHTKTTGRRGRTVGVSKKK 140
Q ++ GR+G +GV +KK
Sbjct: 136 QRMRSNGRKGLAIGVVRKK 154
>sp|A1RT04|RS13_PYRIL 30S ribosomal protein S13 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rps13 PE=3 SV=1
Length = 153
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 85/138 (61%), Gaps = 4/138 (2%)
Query: 3 TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
T++DG ++V ++LT I+G G + + +K ID + G SEE+++K+ + N +
Sbjct: 14 TDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHEL 73
Query: 63 KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 122
P WFLNR+KD GK ++ A+L + D++ +KK+++ +G+RH GL+VRGQ
Sbjct: 74 A-PAWFLNRRKDPETGKDLHLI---GAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129
Query: 123 HTKTTGRRGRTVGVSKKK 140
T TTGR G GV+KKK
Sbjct: 130 RTVTTGRLGPVAGVTKKK 147
>sp|A2SSW0|RS13_METLZ 30S ribosomal protein S13 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps13 PE=3 SV=1
Length = 150
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
++T++DG + V ALT IKG G + I+ ++A +D G +E+V I
Sbjct: 14 INTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDV-AAIEEQVKAY 72
Query: 61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
+P W +NR D+ G+ + + L +D+ +KK+R +RG+RH GL+VR
Sbjct: 73 PASVPKWMVNRPVDVYSGEPKHLY---GSDLSLAKEDDINLMKKMRCYRGIRHENGLKVR 129
Query: 121 GQHTKTTGRRGRTVGVSKKK 140
GQ TK TGR G+ VGVSK++
Sbjct: 130 GQRTKATGRFGKIVGVSKRR 149
>sp|Q18G53|RS13_HALWD 30S ribosomal protein S13 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps13 PE=3 SV=1
Length = 173
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 2 STNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQ 61
+T++DG + V +LT +KG G+R + I+ A +D + G E+E+D I + N
Sbjct: 26 TTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVENLDD 85
Query: 62 YKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 121
+ IP W NR++D G + A L+ K R D+ R+K I +++G+RH G +VRG
Sbjct: 86 H-IPGWMTNRREDFFSGDTDH---KTGADLEEKRRHDVNRMKMIDSYKGVRHKRGQKVRG 141
Query: 122 QHTKTTGRRGRTVGVS 137
Q TK+TGR T+GV+
Sbjct: 142 QRTKSTGRTEGTIGVN 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,988,759
Number of Sequences: 539616
Number of extensions: 1851077
Number of successful extensions: 6856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5294
Number of HSP's gapped (non-prelim): 1038
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)