Query psy1365
Match_columns 140
No_of_seqs 120 out of 943
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:44:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_M 40S ribosomal protein S 100.0 1.5E-64 5.1E-69 382.7 6.0 137 1-140 16-152 (152)
2 3j20_O 30S ribosomal protein S 100.0 1.5E-64 5.1E-69 381.3 3.8 137 1-140 11-147 (148)
3 2xzm_M RPS18E; ribosome, trans 100.0 8.7E-64 3E-68 379.6 4.8 137 1-140 18-154 (155)
4 3u5c_S 40S ribosomal protein S 100.0 5.4E-60 1.9E-64 355.7 9.1 129 1-132 18-146 (146)
5 2vqe_M 30S ribosomal protein S 100.0 3.3E-48 1.1E-52 285.5 4.5 107 1-132 5-111 (126)
6 3r8n_M 30S ribosomal protein S 100.0 6.7E-48 2.3E-52 279.6 6.0 106 1-132 4-109 (114)
7 3bbn_M Ribosomal protein S13; 100.0 4.1E-41 1.4E-45 252.1 -1.3 95 1-132 50-144 (145)
8 1k3x_A Endonuclease VIII; hydr 95.9 0.0062 2.1E-07 48.6 4.1 49 9-57 151-202 (262)
9 1ee8_A MUTM (FPG) protein; bet 95.9 0.0064 2.2E-07 48.7 4.1 49 9-57 144-195 (266)
10 1k82_A Formamidopyrimidine-DNA 95.9 0.0064 2.2E-07 48.7 4.0 49 9-57 151-202 (268)
11 2xzf_A Formamidopyrimidine-DNA 95.9 0.0066 2.2E-07 48.7 4.1 49 9-57 154-205 (271)
12 3u6p_A Formamidopyrimidine-DNA 95.9 0.0067 2.3E-07 48.8 4.1 49 9-57 156-207 (273)
13 3twl_A Formamidopyrimidine-DNA 95.7 0.0088 3E-07 49.0 4.2 50 8-57 168-220 (310)
14 3w0f_A Endonuclease 8-like 3; 95.7 0.0085 2.9E-07 48.9 4.0 49 10-58 176-227 (287)
15 3vk8_A Probable formamidopyrim 95.6 0.0091 3.1E-07 48.6 3.9 49 9-57 155-207 (295)
16 1mu5_A Type II DNA topoisomera 94.9 0.013 4.4E-07 50.4 2.8 47 13-59 258-304 (471)
17 1kft_A UVRC, excinuclease ABC 92.1 0.066 2.3E-06 34.6 1.9 31 4-34 15-45 (78)
18 3fut_A Dimethyladenosine trans 90.7 0.12 4.3E-06 41.0 2.5 51 7-58 219-269 (271)
19 2a1j_A DNA repair endonuclease 90.0 0.1 3.5E-06 32.9 1.2 37 14-52 5-41 (63)
20 3arc_U Photosystem II 12 kDa e 88.7 0.37 1.3E-05 33.1 3.3 48 11-58 24-74 (97)
21 1qyr_A KSGA, high level kasuga 88.2 0.31 1E-05 38.1 3.0 44 8-57 206-249 (252)
22 1tdh_A NEI endonuclease VIII-l 87.8 0.046 1.6E-06 45.9 -2.1 40 8-47 158-200 (364)
23 2zbk_B Type 2 DNA topoisomeras 86.4 0.59 2E-05 40.7 4.0 47 12-58 256-302 (530)
24 1x2i_A HEF helicase/nuclease; 86.2 0.39 1.3E-05 30.0 2.1 50 10-59 11-69 (75)
25 3ftd_A Dimethyladenosine trans 84.2 0.64 2.2E-05 36.1 3.0 30 29-58 217-246 (249)
26 1s5l_U Photosystem II 12 kDa e 84.1 0.78 2.7E-05 33.5 3.1 48 11-58 61-111 (134)
27 3uzu_A Ribosomal RNA small sub 83.5 0.26 8.9E-06 39.2 0.4 45 8-58 230-274 (279)
28 2duy_A Competence protein come 82.6 0.39 1.3E-05 30.6 0.9 22 12-33 26-47 (75)
29 1z00_A DNA excision repair pro 82.0 0.45 1.5E-05 31.2 1.1 24 11-34 17-40 (89)
30 2a1j_B DNA excision repair pro 81.6 0.38 1.3E-05 31.8 0.6 24 11-34 30-53 (91)
31 3fhg_A Mjogg, N-glycosylase/DN 81.3 0.76 2.6E-05 35.0 2.3 42 11-56 115-156 (207)
32 3tqs_A Ribosomal RNA small sub 81.3 0.46 1.6E-05 37.2 1.1 43 8-56 212-254 (255)
33 3n0u_A Probable N-glycosylase/ 76.6 1 3.4E-05 34.9 1.7 40 13-56 129-169 (219)
34 2edu_A Kinesin-like protein KI 74.6 2.3 7.9E-05 28.4 2.9 40 14-53 41-87 (98)
35 3fhf_A Mjogg, N-glycosylase/DN 73.2 1.3 4.4E-05 34.2 1.5 40 13-56 124-164 (214)
36 1z00_B DNA repair endonuclease 72.8 1.2 4.1E-05 29.6 1.1 39 12-52 17-55 (84)
37 1vq8_Y 50S ribosomal protein L 71.0 0.85 2.9E-05 36.0 0.0 38 13-51 15-52 (241)
38 1ixr_A Holliday junction DNA h 70.6 1.4 4.8E-05 33.5 1.1 46 12-57 71-128 (191)
39 2ztd_A Holliday junction ATP-d 69.6 1.5 5.2E-05 33.9 1.2 48 11-58 86-145 (212)
40 2nrt_A Uvrabc system protein C 68.3 1.8 6.1E-05 33.8 1.3 39 12-52 167-205 (220)
41 3gru_A Dimethyladenosine trans 67.8 1.1 3.7E-05 35.9 0.0 52 7-58 226-287 (295)
42 1pu6_A 3-methyladenine DNA gly 65.8 3 0.0001 31.9 2.2 39 12-54 120-158 (218)
43 1cuk_A RUVA protein; DNA repai 65.4 1.9 6.6E-05 33.0 1.0 24 12-35 72-95 (203)
44 2eo2_A Adult MALE hypothalamus 64.3 6.5 0.00022 25.6 3.2 24 30-54 37-60 (71)
45 1qam_A ERMC' methyltransferase 63.9 3.7 0.00013 31.2 2.4 30 28-57 211-240 (244)
46 2ztd_A Holliday junction ATP-d 62.7 2.1 7.3E-05 33.1 0.8 20 14-33 124-143 (212)
47 1kea_A Possible G-T mismatches 62.0 3.9 0.00013 31.2 2.1 41 12-56 114-154 (221)
48 3v76_A Flavoprotein; structura 61.2 5.7 0.00019 32.8 3.2 47 9-58 300-346 (417)
49 3b0x_A DNA polymerase beta fam 60.3 2.9 9.9E-05 36.3 1.3 27 11-37 91-117 (575)
50 2h56_A DNA-3-methyladenine gly 60.3 4.5 0.00015 31.2 2.2 33 11-43 136-169 (233)
51 2abk_A Endonuclease III; DNA-r 59.8 2.7 9.2E-05 31.8 0.9 23 11-33 107-129 (211)
52 2gqf_A Hypothetical protein HI 59.7 5.5 0.00019 32.5 2.8 48 8-58 280-327 (401)
53 1kg2_A A/G-specific adenine gl 59.3 2.9 0.0001 31.9 1.0 41 12-56 108-148 (225)
54 2jhn_A ALKA, 3-methyladenine D 58.5 4.3 0.00015 32.3 1.9 32 11-43 208-240 (295)
55 1orn_A Endonuclease III; DNA r 58.3 3.3 0.00011 31.8 1.1 25 11-35 111-136 (226)
56 4e9f_A Methyl-CPG-binding doma 57.6 3.5 0.00012 30.3 1.2 19 14-32 105-123 (161)
57 1jms_A Terminal deoxynucleotid 55.9 3.8 0.00013 34.1 1.2 40 13-53 121-165 (381)
58 4b21_A Probable DNA-3-methylad 55.9 3.4 0.00012 32.0 0.8 33 11-43 148-181 (232)
59 3s6i_A DNA-3-methyladenine gly 54.7 3.6 0.00012 31.7 0.8 33 11-43 137-170 (228)
60 2yg9_A DNA-3-methyladenine gly 54.6 3.5 0.00012 31.7 0.7 33 11-43 144-177 (225)
61 1mpg_A ALKA, 3-methyladenine D 54.6 3.7 0.00013 32.4 0.9 33 11-43 205-238 (282)
62 4ecq_A DNA polymerase ETA; tra 53.9 9.9 0.00034 31.8 3.5 38 14-51 254-291 (435)
63 3c65_A Uvrabc system protein C 53.9 2.7 9.3E-05 32.9 0.0 42 9-52 169-210 (226)
64 1ixr_A Holliday junction DNA h 53.9 3.9 0.00013 30.9 0.9 21 14-34 108-128 (191)
65 2fmp_A DNA polymerase beta; nu 53.9 4.3 0.00015 33.1 1.2 41 12-53 97-141 (335)
66 3i0w_A 8-oxoguanine-DNA-glycos 53.6 3.5 0.00012 32.9 0.6 42 11-56 209-251 (290)
67 1cuk_A RUVA protein; DNA repai 53.0 3.9 0.00013 31.2 0.8 20 14-33 109-128 (203)
68 2bgw_A XPF endonuclease; hydro 49.8 5.4 0.00019 30.0 1.1 24 12-35 161-184 (219)
69 2ihm_A POL MU, DNA polymerase 49.5 5.3 0.00018 32.9 1.1 40 13-53 102-145 (360)
70 2bcq_A DNA polymerase lambda; 48.9 3.3 0.00011 33.8 -0.2 27 10-37 93-119 (335)
71 2xhi_A N-glycosylase/DNA lyase 48.2 5.3 0.00018 33.0 0.9 23 11-33 251-273 (360)
72 3vdp_A Recombination protein R 48.1 9.1 0.00031 29.7 2.2 40 11-58 24-63 (212)
73 3fsp_A A/G-specific adenine gl 48.1 5.1 0.00018 32.6 0.8 23 11-33 116-138 (369)
74 1cyi_A Cytochrome C6, cytochro 47.3 5.4 0.00018 24.9 0.6 17 42-58 65-81 (90)
75 1nd9_A Translation initiation 46.7 6.7 0.00023 22.2 1.0 41 15-56 8-48 (49)
76 2w9m_A Polymerase X; SAXS, DNA 46.7 6.7 0.00023 34.1 1.4 25 11-36 95-119 (578)
77 2zet_C Melanophilin; complex, 45.7 25 0.00087 25.6 4.2 22 37-58 10-31 (153)
78 2i5h_A Hypothetical protein AF 45.3 7.6 0.00026 30.1 1.3 19 14-32 133-151 (205)
79 1zq9_A Probable dimethyladenos 44.8 22 0.00077 27.4 4.0 32 26-58 248-279 (285)
80 2dn0_A Zinc fingers and homeob 43.4 17 0.00057 22.8 2.6 24 35-58 6-29 (76)
81 1zbd_B Rabphilin-3A; G protein 42.0 16 0.00054 26.1 2.5 22 37-58 3-24 (134)
82 1vdd_A Recombination protein R 41.0 14 0.00046 29.1 2.2 40 11-58 10-49 (228)
83 1c6r_A Cytochrome C6; electron 39.3 11 0.00038 23.2 1.2 17 42-58 66-82 (89)
84 3n5n_X A/G-specific adenine DN 39.1 8.1 0.00028 31.0 0.6 41 12-56 127-168 (287)
85 1kx2_A Mono-heme C-type cytoch 38.1 23 0.0008 21.7 2.6 17 42-58 63-79 (81)
86 4gfj_A Topoisomerase V; helix- 37.9 11 0.00036 33.1 1.2 23 12-34 467-489 (685)
87 2kp7_A Crossover junction endo 37.3 11 0.00039 24.9 1.0 19 15-33 60-78 (87)
88 1exn_A 5'-exonuclease, 5'-nucl 37.2 13 0.00043 29.9 1.5 19 16-34 206-224 (290)
89 1gks_A Cytochrome C551; haloph 36.2 23 0.00078 21.6 2.3 17 42-58 60-76 (78)
90 2d0s_A Cytochrome C, cytochrom 35.8 26 0.00089 21.1 2.5 17 42-58 61-77 (79)
91 1cc5_A Cytochrome C5; electron 35.7 37 0.0013 21.1 3.4 16 43-58 67-82 (83)
92 3q8k_A Flap endonuclease 1; he 35.7 13 0.00044 30.3 1.3 18 17-34 236-253 (341)
93 1ls9_A Cytochrome C6; omega lo 34.6 14 0.0005 22.9 1.2 17 42-58 68-84 (91)
94 2da1_A Alpha-fetoprotein enhan 34.0 18 0.00061 22.1 1.5 18 41-58 11-28 (70)
95 1yz8_P Pituitary homeobox 2; D 34.0 25 0.00085 21.4 2.2 17 42-58 8-24 (68)
96 2bcq_A DNA polymerase lambda; 32.8 11 0.00037 30.7 0.4 41 14-56 58-98 (335)
97 1c75_A Cytochrome C-553; heme, 32.2 32 0.0011 20.3 2.5 20 39-58 50-69 (71)
98 1jx4_A DNA polymerase IV (fami 31.8 32 0.0011 27.5 3.1 37 15-52 180-216 (352)
99 2c8m_A Lipoate-protein ligase 31.6 23 0.00079 27.2 2.1 41 25-69 214-254 (262)
100 2zxy_A Cytochrome C552, cytoch 31.4 28 0.00097 20.9 2.2 18 41-58 68-85 (87)
101 1im4_A DBH; DNA polymerase PAL 31.2 24 0.00082 26.7 2.1 28 14-45 185-212 (221)
102 2djn_A Homeobox protein DLX-5; 31.1 20 0.00069 21.9 1.4 18 41-58 11-28 (70)
103 3ph2_B Cytochrome C6; photosyn 30.8 33 0.0011 20.6 2.4 17 42-58 64-80 (86)
104 1rxw_A Flap structure-specific 30.5 18 0.00062 29.0 1.4 19 16-34 238-256 (336)
105 2hdd_A Protein (engrailed home 30.3 19 0.00064 21.4 1.1 18 41-58 7-24 (61)
106 2exv_A Cytochrome C-551; alpha 30.1 36 0.0012 20.4 2.5 20 39-58 61-80 (82)
107 2cue_A Paired box protein PAX6 30.0 21 0.00073 22.5 1.4 17 42-58 12-28 (80)
108 2i0z_A NAD(FAD)-utilizing dehy 30.0 49 0.0017 26.9 4.0 37 22-58 332-368 (447)
109 1c53_A Cytochrome C553; electr 30.0 28 0.00095 21.1 2.0 16 42-57 62-77 (79)
110 2dmp_A Zinc fingers and homeob 29.9 19 0.00066 23.4 1.2 19 40-58 16-34 (89)
111 1ayg_A Cytochrome C-552; elect 29.7 35 0.0012 20.6 2.4 19 39-57 59-77 (80)
112 3e1s_A Exodeoxyribonuclease V, 29.6 9.5 0.00032 33.1 -0.5 27 13-39 44-70 (574)
113 1wh7_A ZF-HD homeobox family p 29.3 42 0.0014 21.4 2.8 15 43-57 23-37 (80)
114 1ahd_P Antennapedia protein mu 29.2 24 0.00082 21.6 1.5 16 43-58 8-23 (68)
115 2h1r_A Dimethyladenosine trans 28.4 57 0.002 25.3 4.0 32 26-58 260-291 (299)
116 1vqz_A Lipoate-protein ligase, 28.2 42 0.0014 27.1 3.2 43 25-72 213-255 (341)
117 3a03_A T-cell leukemia homeobo 28.2 18 0.00062 21.2 0.8 16 43-58 3-18 (56)
118 3bq0_A POL IV, DBH, DNA polyme 28.2 31 0.001 27.6 2.4 37 15-52 181-217 (354)
119 3ory_A Flap endonuclease 1; hy 28.1 20 0.00069 29.4 1.3 18 17-34 255-272 (363)
120 3dr0_A Cytochrome C6; photosyn 28.1 35 0.0012 20.7 2.2 17 42-58 70-86 (93)
121 1yub_A Ermam, rRNA methyltrans 27.9 28 0.00095 25.9 2.0 29 29-57 211-239 (245)
122 3bqs_A Uncharacterized protein 27.9 28 0.00097 23.2 1.8 23 14-37 5-27 (93)
123 1wh5_A ZF-HD homeobox family p 27.9 20 0.00069 22.9 1.0 16 43-58 23-38 (80)
124 3dmi_A Cytochrome C6; electron 27.7 40 0.0014 20.4 2.4 17 42-58 65-81 (88)
125 2dmq_A LIM/homeobox protein LH 27.3 19 0.00065 22.6 0.8 17 42-58 12-28 (80)
126 1a56_A C-551, ferricytochrome 27.1 29 0.00099 21.0 1.6 16 42-57 63-78 (81)
127 1gdv_A Cytochrome C6; RED ALGA 26.9 42 0.0014 20.0 2.4 16 43-58 64-79 (85)
128 1f1f_A Cytochrome C6; heme, pr 26.8 42 0.0014 20.3 2.4 17 42-58 67-83 (89)
129 1w2l_A Cytochrome oxidase subu 26.8 54 0.0019 20.2 3.0 18 41-58 80-97 (99)
130 1qa6_A Ribosomal protein L11; 26.3 1.2E+02 0.0042 18.9 5.8 35 23-57 3-43 (67)
131 2da2_A Alpha-fetoprotein enhan 26.2 20 0.0007 21.8 0.8 17 42-58 12-28 (70)
132 1cno_A Cytochrome C552; electr 26.2 45 0.0015 20.4 2.5 17 42-58 65-81 (87)
133 4dez_A POL IV 1, DNA polymeras 26.1 28 0.00097 27.9 1.8 37 14-51 179-215 (356)
134 1bw5_A ISL-1HD, insulin gene e 26.1 34 0.0012 20.6 1.8 17 42-58 8-24 (66)
135 1ci4_A Protein (barrier-TO-aut 26.1 32 0.0011 23.1 1.8 24 13-37 18-41 (89)
136 2izo_A FEN1, flap structure-sp 26.0 23 0.0008 28.6 1.3 18 17-34 238-255 (346)
137 1k61_A Mating-type protein alp 25.5 33 0.0011 20.2 1.6 15 43-57 4-18 (60)
138 3mfi_A DNA polymerase ETA; DNA 25.2 24 0.0008 30.4 1.2 29 13-41 307-335 (520)
139 1dgs_A DNA ligase; AMP complex 25.2 19 0.00064 32.3 0.6 35 16-50 444-478 (667)
140 3cu4_A Cytochrome C family pro 25.0 44 0.0015 20.3 2.3 16 43-58 67-82 (85)
141 1wve_C 4-cresol dehydrogenase 25.0 61 0.0021 19.7 2.9 17 42-58 56-72 (80)
142 2da5_A Zinc fingers and homeob 24.7 31 0.0011 21.5 1.5 19 40-58 10-28 (75)
143 2da7_A Zinc finger homeobox pr 24.7 12 0.00042 24.2 -0.5 29 44-73 30-58 (71)
144 2dms_A Homeobox protein OTX2; 24.6 23 0.00077 22.3 0.8 17 42-58 12-28 (80)
145 2ihm_A POL MU, DNA polymerase 24.4 13 0.00045 30.5 -0.5 23 14-36 62-84 (360)
146 1zq3_P PRD-4, homeotic bicoid 24.3 48 0.0016 20.1 2.3 17 42-58 7-23 (68)
147 2dmn_A Homeobox protein TGIF2L 24.3 58 0.002 20.7 2.8 20 38-57 8-27 (83)
148 3k2a_A Homeobox protein MEIS2; 24.2 33 0.0011 21.0 1.5 15 43-57 4-18 (67)
149 3dp5_A OMCF, cytochrome C fami 24.0 48 0.0016 21.2 2.4 16 43-58 81-96 (99)
150 1ul1_X Flap endonuclease-1; pr 23.9 26 0.00091 28.7 1.3 18 17-34 236-253 (379)
151 1cch_A Cytochrome C551; electr 23.9 50 0.0017 19.7 2.3 19 39-57 61-79 (82)
152 2ee7_A Sperm flagellar protein 23.6 37 0.0013 24.0 1.8 34 42-78 10-43 (127)
153 2zzs_A Cytochrome C554; C-type 23.4 53 0.0018 20.7 2.5 16 42-57 85-100 (103)
154 3o0r_C Nitric oxide reductase 23.4 42 0.0014 22.8 2.0 20 39-58 112-131 (146)
155 1b22_A DNA repair protein RAD5 23.2 34 0.0012 23.7 1.5 19 15-33 60-78 (114)
156 1hc8_A Ribosomal protein L11; 23.2 74 0.0025 20.5 3.1 34 23-56 8-47 (76)
157 2k40_A Homeobox expressed in E 23.1 36 0.0012 20.5 1.5 16 43-58 7-22 (67)
158 1a76_A Flap endonuclease-1 pro 23.1 29 0.001 27.6 1.4 16 17-32 229-244 (326)
159 2hnh_A DNA polymerase III alph 23.1 63 0.0021 29.9 3.7 46 9-54 829-884 (910)
160 2ecc_A Homeobox and leucine zi 22.6 30 0.001 22.4 1.1 17 42-58 8-24 (76)
161 2owo_A DNA ligase; protein-DNA 22.5 36 0.0012 30.5 1.9 37 15-51 448-484 (671)
162 2zkr_i 60S ribosomal protein L 22.3 2E+02 0.0069 21.1 5.8 36 22-57 74-117 (165)
163 3osn_A DNA polymerase IOTA; ho 22.0 29 0.00099 28.9 1.1 36 15-51 236-271 (420)
164 1nk2_P Homeobox protein VND; h 21.9 27 0.00094 21.8 0.8 17 42-58 14-30 (77)
165 2ce0_A Cytochrome C6; chloropl 21.9 52 0.0018 20.6 2.2 17 42-58 77-93 (105)
166 1b43_A Protein (FEN-1); nuclea 21.9 28 0.00094 28.0 1.0 18 17-34 241-258 (340)
167 3im1_A Protein SNU246, PRE-mRN 21.7 30 0.001 27.5 1.1 44 14-58 158-212 (328)
168 2ecb_A Zinc fingers and homeob 21.6 34 0.0012 22.6 1.2 19 40-58 14-32 (89)
169 1jms_A Terminal deoxynucleotid 21.5 16 0.00056 30.2 -0.5 23 14-36 81-103 (381)
170 2zon_G Cytochrome C551; nitrit 21.3 61 0.0021 19.7 2.4 16 43-58 69-84 (87)
171 3qe9_Y Exonuclease 1; exonucle 21.2 33 0.0011 28.0 1.3 19 16-34 228-246 (352)
172 2llk_A Cyclin-D-binding MYB-li 21.0 80 0.0027 20.0 2.9 25 34-58 16-40 (73)
173 2kt0_A Nanog, homeobox protein 21.0 30 0.001 21.9 0.8 17 42-58 27-43 (84)
174 3doa_A Fibrinogen binding prot 20.6 38 0.0013 26.7 1.6 26 11-36 190-217 (288)
175 2fmp_A DNA polymerase beta; nu 20.5 31 0.0011 27.9 1.0 21 14-34 58-78 (335)
176 3cp5_A Cytochrome C; electron 20.4 1.4E+02 0.0049 19.2 4.3 20 38-57 99-118 (124)
177 1x41_A Transcriptional adaptor 20.2 1E+02 0.0036 18.2 3.2 31 34-67 1-31 (60)
No 1
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-64 Score=382.73 Aligned_cols=137 Identities=72% Similarity=1.214 Sum_probs=135.3
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|.++|++|.+|.||+||+|||+|++||++
T Consensus 16 ~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~~G~~ 95 (152)
T 3iz6_M 16 LNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRF 95 (152)
T ss_dssp TTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCCCCSC
T ss_pred cCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccCCcce
Confidence 68999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCccceeeeccC
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 140 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~~~gv~~kk 140 (140)
.|+++ +||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 96 ~~li~---~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~tvgv~kkk 152 (152)
T 3iz6_M 96 SQVVS---NAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152 (152)
T ss_dssp CTTCT---HHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHHCSCCSSCC
T ss_pred eeech---hHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCceecceecCC
Confidence 99999 9999999999999999999999999999999999999999999999999997
No 2
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-64 Score=381.30 Aligned_cols=137 Identities=45% Similarity=0.734 Sum_probs=134.7
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|.||+||+|||+|++||++
T Consensus 11 ~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr~kD~~~G~~ 90 (148)
T 3j20_O 11 AGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRD 90 (148)
T ss_dssp SSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSEEEETTTEEE
T ss_pred cCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcccCCCCCCce
Confidence 68999999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCccceeeeccC
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 140 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~~~gv~~kk 140 (140)
.|+++ +||++++++||+||++|+||||+||.+||||||||||||||+|+||||+|||
T Consensus 91 ~~~ve---~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~tvgv~kkk 147 (148)
T 3j20_O 91 LHLIT---AKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKK 147 (148)
T ss_dssp ECCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCSSCCCCCSSCC
T ss_pred eEEec---hHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCcCcccceeccC
Confidence 99999 9999999999999999999999999999999999999999999999999987
No 3
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=8.7e-64 Score=379.58 Aligned_cols=137 Identities=54% Similarity=0.912 Sum_probs=135.2
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|.||+||+|||+|++||++
T Consensus 18 ~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~w~lNr~kD~~~G~~ 97 (155)
T 2xzm_M 18 LNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKN 97 (155)
T ss_dssp TTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCGGGCSEEEETTTEEE
T ss_pred eCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCHHHhhcccccCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCccceeeeccC
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 140 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~~~gv~~kk 140 (140)
.|+++ +||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus 98 ~~~ie---~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRtg~tvGv~kkk 154 (155)
T 2xzm_M 98 YQMAS---NTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRHGVVCGVVRKN 154 (155)
T ss_dssp ECCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCSSCCCSSCCCC
T ss_pred eEEec---HHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCCcccccccccC
Confidence 99999 9999999999999999999999999999999999999999999999999987
No 4
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=5.4e-60 Score=355.74 Aligned_cols=129 Identities=67% Similarity=1.128 Sum_probs=126.9
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|.++|++|.+|.||+||+|||+|++||++
T Consensus 18 ~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD~~~G~~ 97 (146)
T 3u5c_S 18 LNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKD 97 (146)
T ss_dssp TTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSCSSSCCC
T ss_pred cCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHHhhhhhcccccch
Confidence 68999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCcc
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGR 132 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~ 132 (140)
.|+++ +||++++++||+||++|+||||+||.+||||||||||||||+|+
T Consensus 98 ~~lie---~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~ 146 (146)
T 3u5c_S 98 YHTLA---NNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA 146 (146)
T ss_dssp BCCCT---HHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCSCC
T ss_pred heeeh---HHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCCCC
Confidence 99999 99999999999999999999999999999999999999999985
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=3.3e-48 Score=285.45 Aligned_cols=107 Identities=32% Similarity=0.503 Sum_probs=102.7
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|++|||+|||||+++|.+||+++||||++++++||++|+++|.++|++ +|.++
T Consensus 5 ~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~~ve--------------- 67 (126)
T 2vqe_M 5 AGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TWKLE--------------- 67 (126)
T ss_dssp STTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TSCCH---------------
T ss_pred eCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hCcch---------------
Confidence 5899999999999999999999999999999999999999999999999999999986 46555
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCcc
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGR 132 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~ 132 (140)
+||++++++||+||++|+||||+||.+|||||||||||||||++
T Consensus 68 --------~dLrr~~~~nIkRL~~I~~YRG~RH~~GLPVRGQRTkTNaRTrk 111 (126)
T 2vqe_M 68 --------GELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRK 111 (126)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSSSCCCSSCCHHHH
T ss_pred --------hHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccCccccccCC
Confidence 89999999999999999999999999999999999999999875
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=6.7e-48 Score=279.64 Aligned_cols=106 Identities=31% Similarity=0.503 Sum_probs=102.8
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|.++|+ +|.+|
T Consensus 4 ~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~---~~~ie--------------- 65 (114)
T 3r8n_M 4 AGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA---KFVVE--------------- 65 (114)
T ss_dssp TSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHS---SSCTT---------------
T ss_pred CCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHH---Hhcch---------------
Confidence 699999999999999999999999999999999999999999999999999999995 47788
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCcc
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGR 132 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~ 132 (140)
+||++++++||+||++|+||||+||.+|||||||||||||||+|
T Consensus 66 --------~dLr~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRTrk 109 (114)
T 3r8n_M 66 --------GDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRK 109 (114)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHTTSCCSSCCSSSCCHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhceeeeecccCCCCCCCCCCCCcccccC
Confidence 89999999999999999999999999999999999999999986
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.1e-41 Score=252.08 Aligned_cols=95 Identities=38% Similarity=0.467 Sum_probs=88.8
Q ss_pred CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365 1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY 80 (140)
Q Consensus 1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~ 80 (140)
+|||||++|+|.+|||+|||||+++|.+||+++|| |++++++|||+|+++|.++
T Consensus 50 ~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~------------------------- 103 (145)
T 3bbn_M 50 GGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE------------------------- 103 (145)
T ss_dssp SSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS-------------------------
T ss_pred eCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH-------------------------
Confidence 58999999999999999999999999999999999 7999999999999999543
Q ss_pred eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCcc
Q psy1365 81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGR 132 (140)
Q Consensus 81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~ 132 (140)
++++++||+||++|+||||+||.+|||||||||||||||.|
T Consensus 104 -----------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrK 144 (145)
T 3bbn_M 104 -----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144 (145)
T ss_dssp -----------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSC
T ss_pred -----------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCC
Confidence 23467899999999999999999999999999999999975
No 8
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=95.93 E-value=0.0062 Score=48.62 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=42.6
Q ss_pred eeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|+..|-+.|.
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL 202 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 4555566 446999999999999999999999999999999999977775
No 9
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=95.92 E-value=0.0064 Score=48.74 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=41.8
Q ss_pred eeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|++.|-+.+.
T Consensus 144 ~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 195 (266)
T 1ee8_A 144 RPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALR 195 (266)
T ss_dssp SBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHH
T ss_pred ccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 3444444 568899999999999999999999999999999999977664
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=95.90 E-value=0.0064 Score=48.74 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=42.1
Q ss_pred eeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|++.|-+.+.
T Consensus 151 ~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (268)
T 1k82_A 151 TAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIK 202 (268)
T ss_dssp SBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 3444455 568899999999999999999999999999999999977664
No 11
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=95.89 E-value=0.0066 Score=48.71 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=41.8
Q ss_pred eeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|++.|-+.+.
T Consensus 154 ~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 205 (271)
T 2xzf_A 154 KKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSII 205 (271)
T ss_dssp SBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 3444444 558899999999999999999999999999999999977664
No 12
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=95.87 E-value=0.0067 Score=48.79 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=42.4
Q ss_pred eeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|++.|-+.+.
T Consensus 156 ~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (273)
T 3u6p_A 156 RSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMV 207 (273)
T ss_dssp SBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred chHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 3444445 568899999999999999999999999999999999977775
No 13
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=95.70 E-value=0.0088 Score=49.02 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=42.2
Q ss_pred Ceeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 8 KRKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 8 ~k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
+.+|.-+| +-|-|||.-.|..||=.+||+|..++++||++|++.|-+.|.
T Consensus 168 ~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~ 220 (310)
T 3twl_A 168 KITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIK 220 (310)
T ss_dssp CSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred cchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 34454555 457899999999999999999999999999999999966664
No 14
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=95.69 E-value=0.0085 Score=48.89 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=43.5
Q ss_pred eeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 10 KVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 10 ~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+|..+| +-|-|||.-.|..+|=.+||+|..++++||++|++.|.+.|..
T Consensus 176 ~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 176 MLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp BHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 455555 5688999999999999999999999999999999999888863
No 15
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=95.61 E-value=0.0091 Score=48.58 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=41.9
Q ss_pred eeeeeec---cc-ccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 9 RKVMFAL---TA-IKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 9 k~v~~AL---t~-IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+|.-+| +- |-|||.-.|..||=.+||+|..++++||++|++.|-+.+.
T Consensus 155 ~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (295)
T 3vk8_A 155 QPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (295)
T ss_dssp SBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred chHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 3444455 34 8999999999999999999999999999999999977764
No 16
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=94.88 E-value=0.013 Score=50.43 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=43.1
Q ss_pred eecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCC
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNP 59 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~ 59 (140)
|.-..+-+||..+|..||..+|++|.++..+|+.+|+..|.+++.+.
T Consensus 258 fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 258 FLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp HHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred hhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 44467999999999999999999999999999999999999999864
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.12 E-value=0.066 Score=34.60 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred cCCCCeeeeeecccccccCcchHHHHHhHhC
Q psy1365 4 NIDGKRKVMFALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 4 ~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lG 34 (140)
-++.+.....+|..|+|||+.+|..|++.+|
T Consensus 15 ~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 15 VPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp --------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred HHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 3556677888999999999999999999876
No 18
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=90.65 E-value=0.12 Score=40.99 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 7 GKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 7 ~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
..|.+..+|..+ |.+......++..+||+|+.++.+||.+|...|.+.+++
T Consensus 219 rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 219 RRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp TTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred CCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 356666777654 345667788999999999999999999999999988853
No 19
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.98 E-value=0.1 Score=32.85 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.5
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
.|..|+|||+..+..+++.+| .-..+...|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999876 3456677788888776
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=88.69 E-value=0.37 Score=33.12 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=36.2
Q ss_pred eeeecccccccCcchHHHHHhHhCCC---CCCccCCCCHHHHHHHHHHHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADID---LNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~---~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
=.-.|+.++|||+.+|..|.+.=++. .-..+.-+.+..+++|..+++.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 34578999999999999999842222 2234555789999999998874
No 21
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=88.19 E-value=0.31 Score=38.10 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred CeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 8 KRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 8 ~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.|.+..+|..+++ ..++..+||+|+.++.+||.+|...|.+.+.
T Consensus 206 rK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 206 RKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp TSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 4666667765543 5678899999999999999999999988875
No 22
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=87.78 E-value=0.046 Score=45.86 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=34.3
Q ss_pred Ceeeeeec---ccccccCcchHHHHHhHhCCCCCCccCCCCHH
Q psy1365 8 KRKVMFAL---TAIKGCGRRFSNIVLKKADIDLNKRAGECSEE 47 (140)
Q Consensus 8 ~k~v~~AL---t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~ 47 (140)
+.+|.-+| +-|-|||.-.|..||=.+||+|...+++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 34555555 56889999999999999999999999999886
No 23
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=86.36 E-value=0.59 Score=40.74 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=42.0
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
.|.-..+-++|..+|..||..+|++|+++..+|+.+|+..+.+++..
T Consensus 256 ~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~ 302 (530)
T 2zbk_B 256 EFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 302 (530)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH
T ss_pred hhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh
Confidence 34456688999999999999999999999999999999999998874
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.22 E-value=0.39 Score=29.99 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=34.1
Q ss_pred eeeeecccccccCcchHHHHHhHhCC-------CC--CCccCCCCHHHHHHHHHHHhCC
Q psy1365 10 KVMFALTAIKGCGRRFSNIVLKKADI-------DL--NKRAGECSEEEVDKIITIMTNP 59 (140)
Q Consensus 10 ~v~~ALt~IyGIG~~~A~~Ic~~lGI-------~~--~~~~~~Ls~~qi~~L~~~I~~~ 59 (140)
....+|+.|+|||...|..|++.+|= ++ -..+.-+.+.....|..+++++
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 44567899999999999999998752 11 1233445666666776666653
No 25
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=84.22 E-value=0.64 Score=36.05 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=28.0
Q ss_pred HHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 29 VLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 29 Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
.+..+||+|++++.+||.+|...|.+.+.+
T Consensus 217 ~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 217 LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 789999999999999999999999998865
No 26
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=84.06 E-value=0.78 Score=33.45 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=36.1
Q ss_pred eeeecccccccCcchHHHHHhHhC---CCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKAD---IDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lG---I~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
=.-.|+.+.|||+.+|.+|.+.-. ++.-+.+.-+++.+.+.|.+..++
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 111 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 345688999999999999995322 233345556789999999888875
No 27
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=83.53 E-value=0.26 Score=39.16 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=36.1
Q ss_pred CeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 8 KRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 8 ~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
.|.+..+|..+++ ..++..+||+|+.++.+||.+|...|.++++.
T Consensus 230 rK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 230 RKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp TSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 4566667766543 34578899999999999999999999998863
No 28
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=82.62 E-value=0.39 Score=30.59 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.3
Q ss_pred eeecccccccCcchHHHHHhHh
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~l 33 (140)
...|..+.|||+.+|..|++..
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC
T ss_pred HHHHHhCCCCCHHHHHHHHHHc
Confidence 4458899999999999999976
No 29
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.99 E-value=0.45 Score=31.23 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.3
Q ss_pred eeeecccccccCcchHHHHHhHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lG 34 (140)
+..+|..|+|||+..|..|++.+|
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC
Confidence 456899999999999999999876
No 30
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.61 E-value=0.38 Score=31.85 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.6
Q ss_pred eeeecccccccCcchHHHHHhHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lG 34 (140)
+..+|+.|.|||+..|..|++.+|
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC
Confidence 457899999999999999999876
No 31
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=81.30 E-value=0.76 Score=34.96 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=29.5
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
..-.|.+++|||+.+|..||..+|..| .-+- |..+.++..-+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~~~~~~-~~~v---D~~v~Ri~~rl 156 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRNVGYFD-LAII---DRHIIDFMRRI 156 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCS-SCCC---CHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCCCC-ccee---cHHHHHHHHHc
Confidence 345688999999999999998777743 3222 35666665544
No 32
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=81.27 E-value=0.46 Score=37.16 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=33.8
Q ss_pred CeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 8 KRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 8 ~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
.|.+..+|..+++ ...+..+||+|+.++.+||.+|...|.+++
T Consensus 212 rK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 212 RKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp TSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred ChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 4566666766542 135788999999999999999999998876
No 33
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=76.59 E-value=1 Score=34.93 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.7
Q ss_pred eecc-cccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 13 FALT-AIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 13 ~ALt-~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
-.|. +++|||+.+|..||..+|..|-..++ ..+.++..-+
T Consensus 129 ~~L~~~l~GVG~kTA~~vL~~~g~~~~~~VD----thv~Ri~~rl 169 (219)
T 3n0u_A 129 EFLVRNAKGIGWKEASHFLRNTGVEDLAILD----KHVLRLMKRH 169 (219)
T ss_dssp HHHHHHSTTCCHHHHHHHHHTTTCCSCCCCC----HHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCCCeeeec----HHHHHHHHHc
Confidence 3577 99999999999999778875544332 4666665544
No 34
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=74.59 E-value=2.3 Score=28.39 Aligned_cols=40 Identities=8% Similarity=0.275 Sum_probs=26.5
Q ss_pred ecccccccCcchHHHHHhHhC-------CCCCCccCCCCHHHHHHHH
Q psy1365 14 ALTAIKGCGRRFSNIVLKKAD-------IDLNKRAGECSEEEVDKII 53 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lG-------I~~~~~~~~Ls~~qi~~L~ 53 (140)
.|..|+|||+..|..|++... +..-.++.-++...++.|.
T Consensus 41 ~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~ 87 (98)
T 2edu_A 41 DLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFL 87 (98)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHH
Confidence 478999999999999998762 1222333335555555553
No 35
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=73.24 E-value=1.3 Score=34.25 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=29.4
Q ss_pred eecc-cccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 13 FALT-AIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 13 ~ALt-~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
-.|. +++|||+.+|..||..+|. +...+- |..+.++..-+
T Consensus 124 e~Ll~~LpGVG~KTA~~vL~~~g~-~~~~vV---Dthv~Ri~~Rl 164 (214)
T 3fhf_A 124 EFLVRNIKGIGYKEASHFLRNVGY-DDVAII---DRHILRELYEN 164 (214)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHTTC-CSCCCC---CHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCC-CCcccC---cHHHHHHHHHc
Confidence 4577 9999999999999988877 444422 35677776655
No 36
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.80 E-value=1.2 Score=29.59 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
...|..|+|||+.....+++.+| .-..+...|.+|+..+
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 44688999999999999998765 2344555666666655
No 37
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=70.98 E-value=0.85 Score=35.98 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred eecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHH
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDK 51 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~ 51 (140)
..|..|.|||+.+|..|+.. ||..-..+...+.+++..
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~-gf~sve~L~~a~~~eL~~ 52 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREA-GFESVEDVRGADQSALAD 52 (241)
T ss_dssp ---------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHc-CCCCHHHHHhCCHHHHHh
Confidence 46888999999999999988 776544444334444443
No 38
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=70.57 E-value=1.4 Score=33.47 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.0
Q ss_pred eeecccccccCcchHHHHHhHhCCCCC------------CccCCCCHHHHHHHHHHHh
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLN------------KRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~------------~~~~~Ls~~qi~~L~~~I~ 57 (140)
+..|.+|.|||+++|..|+..+|-+.- .++.-+.+.--++|...+.
T Consensus 71 f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 335788999999999999988776221 2333345555555555554
No 39
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.61 E-value=1.5 Score=33.94 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=30.7
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCC------------CccCCCCHHHHHHHHHHHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLN------------KRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~------------~~~~~Ls~~qi~~L~~~I~~ 58 (140)
++.-|.+|.|||+++|..|+..++.+.- .++.-+.+.-.++|...+..
T Consensus 86 lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 86 LFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3445778899999999999887776432 23444455555556555543
No 40
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=68.32 E-value=1.8 Score=33.84 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=29.8
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
...|..|.|||+.+|+.+++.+| .-..+.+-|.+|+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 35688999999999999999988 1233556677777665
No 41
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=67.82 E-value=1.1 Score=35.92 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCeeeeeeccccc---ccCcchHHHHHhHh-----CCCC--CCccCCCCHHHHHHHHHHHhC
Q psy1365 7 GKRKVMFALTAIK---GCGRRFSNIVLKKA-----DIDL--NKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 7 ~~k~v~~ALt~Iy---GIG~~~A~~Ic~~l-----GI~~--~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
..|.+..+|.... |+....+..++..+ |+++ ++++.+||.+|+..|.+++.+
T Consensus 226 rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 226 RNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp TTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred CchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 3567777787654 34455677888888 8999 999999999999999888853
No 42
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=65.81 E-value=3 Score=31.86 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=26.2
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIIT 54 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~ 54 (140)
.-.|.+++|||+.+|..||..+.=.|-..+ |..+.++..
T Consensus 120 ~~~L~~lpGIG~kTA~~il~~a~~~~~~~v----D~~v~Ri~~ 158 (218)
T 1pu6_A 120 REWLLDQKGIGKESADAILCYACAKEVMVV----DKYSYLFLK 158 (218)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCSCCCC----CHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHHHHCCCCcccc----CHHHHHHHH
Confidence 345899999999999999987543343222 345555543
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=65.42 E-value=1.9 Score=32.95 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.1
Q ss_pred eeecccccccCcchHHHHHhHhCC
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADI 35 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI 35 (140)
+..|.+|.|||+++|..|+..+|-
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHhcCCCcCHHHHHHHHhhCCh
Confidence 335788999999999999988776
No 44
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.31 E-value=6.5 Score=25.59 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.3
Q ss_pred HhHhCCCCCCccCCCCHHHHHHHHH
Q psy1365 30 LKKADIDLNKRAGECSEEEVDKIIT 54 (140)
Q Consensus 30 c~~lGI~~~~~~~~Ls~~qi~~L~~ 54 (140)
+++|||+. ....+|++||+.+...
T Consensus 37 L~kLGI~k-tdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 37 LKKLGIHK-TDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHTCCC-CSTTTCCHHHHHHHHH
T ss_pred HHHcCCCC-CCcccCCHHHHhhcee
Confidence 46899996 6899999999998854
No 45
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=63.92 E-value=3.7 Score=31.22 Aligned_cols=30 Identities=7% Similarity=-0.140 Sum_probs=27.3
Q ss_pred HHHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 28 IVLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 28 ~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.++..+|++|+.++.+||.+|...|.+.++
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~ 240 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYK 240 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHH
Confidence 468889999999999999999999988875
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=62.71 E-value=2.1 Score=33.07 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.0
Q ss_pred ecccccccCcchHHHHHhHh
Q psy1365 14 ALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~l 33 (140)
.|+.++|||+++|..|+..+
T Consensus 124 ~L~~vpGIG~KtA~rIi~el 143 (212)
T 2ztd_A 124 ALTRVPGIGKRGAERMVLEL 143 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999999665
No 47
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=61.97 E-value=3.9 Score=31.21 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.1
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
.-.|.+++|||+.+|..|+..+.=.|...+ |..+.++..-+
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~~~~~~~~~v----D~~v~Rv~~rl 154 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCLAFGKKAAMV----DANFVRVINRY 154 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCCCCCC----CHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhcCCCccee----cHHHHHHHHHH
Confidence 356899999999999999987543343222 34555554433
No 48
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=61.15 E-value=5.7 Score=32.79 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=38.4
Q ss_pred eeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 9 RKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 9 k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+.+...|.. .+..+.+..+|+.+++ +++++.+|+++++.+|.+.|.+
T Consensus 300 ~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 300 QAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp SBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 334444443 3677889999999999 9999999999999999999986
No 49
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=60.34 E-value=2.9 Score=36.31 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=22.8
Q ss_pred eeeecccccccCcchHHHHHhHhCCCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDL 37 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~ 37 (140)
....|.+|+|||+++|..|+..+|+..
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~ 117 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDS 117 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCS
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCC
Confidence 445689999999999999999887764
No 50
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=60.28 E-value=4.5 Score=31.18 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=24.6
Q ss_pred eeeecccccccCcchHHHHHhH-hCCCCCCccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKK-ADIDLNKRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~-lGI~~~~~~~~ 43 (140)
+.-.|..++|||+.+|..||.. +|...-..+++
T Consensus 136 ~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd 169 (233)
T 2h56_A 136 VIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGD 169 (233)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCch
Confidence 4556899999999999999987 45543455544
No 51
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=59.75 E-value=2.7 Score=31.77 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=19.4
Q ss_pred eeeecccccccCcchHHHHHhHh
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~l 33 (140)
..-.|++++|||+.+|..|+...
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 34568999999999999999764
No 52
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=59.74 E-value=5.5 Score=32.54 Aligned_cols=48 Identities=8% Similarity=0.247 Sum_probs=39.4
Q ss_pred CeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 8 KRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 8 ~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
++.+...|... +..+.+..+|+..|++ ..++.+|+++|...|.+.|.+
T Consensus 280 ~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 280 KQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred cccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 44555556554 6788999999999998 688999999999999999975
No 53
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=59.31 E-value=2.9 Score=31.92 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=26.9
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
.-.|.+++|||+.+|..|+..+-=.|.. + -|-.+.++..-+
T Consensus 108 ~~~L~~lpGIG~~TA~~il~~a~~~~~~-~---vD~~v~Rv~~rl 148 (225)
T 1kg2_A 108 FEEVAALPGVGRSTAGAILSLSLGKHFP-I---LDGNVKRVLARC 148 (225)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHCCSCC-C---CCHHHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHhCCCCcc-e---eCHHHHHHHHHH
Confidence 4568999999999999999764223322 2 334555554443
No 54
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=58.49 E-value=4.3 Score=32.31 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=24.5
Q ss_pred eeeecccccccCcchHHHHHhH-hCCCCCCccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKK-ADIDLNKRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~-lGI~~~~~~~~ 43 (140)
+.-.|..++|||+.+|..||-. +| ..-..+++
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG-KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC-CCcccchH
Confidence 4567899999999999999987 56 33445655
No 55
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=58.28 E-value=3.3 Score=31.82 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.8
Q ss_pred eeeecccccccCcchHHHHHhH-hCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKK-ADI 35 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~-lGI 35 (140)
..-.|.+++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 3457899999999999999976 465
No 56
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=57.59 E-value=3.5 Score=30.32 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=16.3
Q ss_pred ecccccccCcchHHHHHhH
Q psy1365 14 ALTAIKGCGRRFSNIVLKK 32 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~ 32 (140)
.|.+++|||+.+|.+++--
T Consensus 105 ~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 105 YPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp SGGGSTTCCHHHHHHHHHH
T ss_pred hhhcCCCchHHHHHHHHHH
Confidence 5889999999999987643
No 57
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=55.90 E-value=3.8 Score=34.11 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=28.7
Q ss_pred eecccccccCcchHHHHHhHhCCCCCCcc-----CCCCHHHHHHHH
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLNKRA-----GECSEEEVDKII 53 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~-----~~Ls~~qi~~L~ 53 (140)
..|++|+|||+++|..+-+. ||..---+ ..|++.|..-|.
T Consensus 121 ~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl~ 165 (381)
T 1jms_A 121 KLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGFL 165 (381)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHHH
Confidence 46789999999999999877 88753222 256666655553
No 58
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=55.87 E-value=3.4 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=24.7
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCC-CccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLN-KRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~-~~~~~ 43 (140)
+.-.|+.++|||+.+|..||-..-=.|+ ..++|
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 4567999999999999999987533443 45555
No 59
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=54.72 E-value=3.6 Score=31.70 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=24.1
Q ss_pred eeeecccccccCcchHHHHHhHh-CCCCCCccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKA-DIDLNKRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~l-GI~~~~~~~~ 43 (140)
+.-.|+.++|||+.+|..||-.. |-..-..+++
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 35578999999999999999764 4432345554
No 60
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=54.60 E-value=3.5 Score=31.68 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=24.0
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCC-CccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLN-KRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~-~~~~~ 43 (140)
+.-.|+.++|||+.+|..||-..-=.|+ ..++|
T Consensus 144 ~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D 177 (225)
T 2yg9_A 144 VIAELVQLPGIGRWTAEMFLLFALARPDVFSSGD 177 (225)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCcc
Confidence 4567899999999999999987432343 45544
No 61
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=54.59 E-value=3.7 Score=32.39 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=24.0
Q ss_pred eeeecccccccCcchHHHHHhHhCCCC-CCccCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDL-NKRAGE 43 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~-~~~~~~ 43 (140)
+.-.|+.++|||+.+|..||-..-=.| -..+++
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd 238 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDD 238 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCCCcCcccc
Confidence 356799999999999999998743334 333443
No 62
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=53.95 E-value=9.9 Score=31.80 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=30.1
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHH
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDK 51 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~ 51 (140)
-+..+.|||+.++..++..+||..-.-+..++.+++.+
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~ 291 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHH
Confidence 46789999999999999999998755555667666643
No 63
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=53.91 E-value=2.7 Score=32.87 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred eeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 9 RKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 9 k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
.....+|..|.|||+.+|..+++.+|= -..+.+-|.+|+..+
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 345678999999999999999998762 122333344554443
No 64
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=53.86 E-value=3.9 Score=30.95 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.6
Q ss_pred ecccccccCcchHHHHHhHhC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lG 34 (140)
.|+.++|||+++|..|...+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999997763
No 65
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=53.85 E-value=4.3 Score=33.08 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=29.2
Q ss_pred eeecccccccCcchHHHHHhHhCCCCCCc----cCCCCHHHHHHHH
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADIDLNKR----AGECSEEEVDKII 53 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~----~~~Ls~~qi~~L~ 53 (140)
...|++|+|||+++|..+-+. ||..--- -+.|+..|..-|.
T Consensus 97 l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~ 141 (335)
T 2fmp_A 97 INFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLK 141 (335)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHH
Confidence 345899999999999999887 9875222 2456665555553
No 66
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=53.58 E-value=3.5 Score=32.89 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.8
Q ss_pred eeeecccccccCcchHHHHHhH-hCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKK-ADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~-lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
..-.|..++|||+.+|..||-. +|-..-..+ | -.+.++...+
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv-D---~~v~r~~~rl 251 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFSMQKYSAFPV-D---TWVKKAMMSL 251 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC-C---HHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCccee-c---HHHHHHHHHh
Confidence 4457899999999999999977 555434444 3 4555554444
No 67
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=53.02 E-value=3.9 Score=31.19 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.6
Q ss_pred ecccccccCcchHHHHHhHh
Q psy1365 14 ALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~l 33 (140)
.|++++|||+++|..|+..+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998654
No 68
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=49.81 E-value=5.4 Score=29.97 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.9
Q ss_pred eeecccccccCcchHHHHHhHhCC
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKADI 35 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lGI 35 (140)
.+.|..|+|||+..|..|++..|=
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 456889999999999999999873
No 69
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=49.52 E-value=5.3 Score=32.89 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=29.3
Q ss_pred eecccccccCcchHHHHHhHhCCCCC----CccCCCCHHHHHHHH
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLN----KRAGECSEEEVDKII 53 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~----~~~~~Ls~~qi~~L~ 53 (140)
..|++|+|||+++|..+-+. ||..- .+-+.|++.|..-|.
T Consensus 102 ~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 46789999999999999877 88742 233567776665553
No 70
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=48.90 E-value=3.3 Score=33.81 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.2
Q ss_pred eeeeecccccccCcchHHHHHhHhCCCC
Q psy1365 10 KVMFALTAIKGCGRRFSNIVLKKADIDL 37 (140)
Q Consensus 10 ~v~~ALt~IyGIG~~~A~~Ic~~lGI~~ 37 (140)
++.-.|++|+|||+++|..+-+. ||..
T Consensus 93 p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 93 PVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 33334579999999999999876 8874
No 71
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=48.24 E-value=5.3 Score=32.95 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.0
Q ss_pred eeeecccccccCcchHHHHHhHh
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~l 33 (140)
..-.|..++|||+.+|..||...
T Consensus 251 ~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 251 AHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHh
Confidence 45678999999999999999774
No 72
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=48.12 E-value=9.1 Score=29.75 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.5
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+.-+|..++|||+++|..+.-.+= .-+++++..|.++|.+
T Consensus 24 LI~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 24 LIEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 345789999999999999975442 2356778888777753
No 73
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=48.12 E-value=5.1 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=19.8
Q ss_pred eeeecccccccCcchHHHHHhHh
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~l 33 (140)
..-.|.+++|||+.+|..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 34578999999999999999875
No 74
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=47.27 E-value=5.4 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 47999999999999964
No 75
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=46.74 E-value=6.7 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=31.0
Q ss_pred cccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 15 LTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
|..-.|++.......+..+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 444568888888999999999 54556668888888876654
No 76
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=46.73 E-value=6.7 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.4
Q ss_pred eeeecccccccCcchHHHHHhHhCCC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADID 36 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~ 36 (140)
....|.+|+|||+++|..|... ||.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 3455899999999999999986 554
No 77
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.72 E-value=25 Score=25.57 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=18.1
Q ss_pred CCCccCCCCHHHHHHHHHHHhC
Q psy1365 37 LNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 37 ~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
....++.|||+|-+.|.++|..
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHh
Confidence 3456889999999999999975
No 78
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=45.31 E-value=7.6 Score=30.08 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=16.9
Q ss_pred ecccccccCcchHHHHHhH
Q psy1365 14 ALTAIKGCGRRFSNIVLKK 32 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~ 32 (140)
.|..++|||+.+|.+|.+.
T Consensus 133 eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHH
Confidence 4788999999999999964
No 79
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=44.82 E-value=22 Score=27.43 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 26 SNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 26 A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+..++..+||+ .+++.+||.+|...|.+.+.+
T Consensus 248 ~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 248 IQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 46778999998 789999999999999998864
No 80
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.40 E-value=17 Score=22.77 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=18.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 35 IDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 35 I~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
.+|...-..+|++|+..|..++..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~ 29 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCR 29 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhc
Confidence 455555567899999999988864
No 81
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.00 E-value=16 Score=26.12 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=15.6
Q ss_pred CCCccCCCCHHHHHHHHHHHhC
Q psy1365 37 LNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 37 ~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+...++.||++|.+.|.++|..
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhh
Confidence 5567889999999999999975
No 82
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=40.96 E-value=14 Score=29.08 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=29.8
Q ss_pred eeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 11 VMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 11 v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+.-+|..++|||+++|..+.-.+= .-.++++..|.++|.+
T Consensus 10 LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 10 LIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 456789999999999999975542 2356778888777753
No 83
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=39.31 E-value=11 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 47999999999999964
No 84
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=39.13 E-value=8.1 Score=31.01 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=25.9
Q ss_pred eeeccc-ccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 12 MFALTA-IKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 12 ~~ALt~-IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
.-.|.. ++|||+.+|..|+..+-=.|.. + -|..+.++..-+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~-~---VDt~V~Rv~~Rl 168 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIAFGQATG-V---VDGNVARVLCRV 168 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHSCCCCC-C---CCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhcCCCCc-c---ccHHHHHHHHHh
Confidence 345666 9999999999999764222322 2 234566665544
No 85
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=38.12 E-value=23 Score=21.73 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999999964
No 86
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=37.88 E-value=11 Score=33.08 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.4
Q ss_pred eeecccccccCcchHHHHHhHhC
Q psy1365 12 MFALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 12 ~~ALt~IyGIG~~~A~~Ic~~lG 34 (140)
..-|++|.|||+.+|..+++++|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhc
Confidence 35689999999999999999876
No 87
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=37.28 E-value=11 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.9
Q ss_pred cccccccCcchHHHHHhHh
Q psy1365 15 LTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~l 33 (140)
+..+.|||.++|..|-++|
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 4688999999999987665
No 88
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=37.19 E-value=13 Score=29.94 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=16.3
Q ss_pred ccccccCcchHHHHHhHhC
Q psy1365 16 TAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 16 t~IyGIG~~~A~~Ic~~lG 34 (140)
-.|+|||+++|..+++..|
T Consensus 206 PGVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 206 RGVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCCTTCCHHHHHHHHHHHC
T ss_pred CCCCcCCHhHHHHHHHHcC
Confidence 3589999999999998765
No 89
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=36.20 E-value=23 Score=21.61 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999964
No 90
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=35.79 E-value=26 Score=21.12 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999864
No 91
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=35.67 E-value=37 Score=21.11 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.||++||..|..+|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999853
No 92
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=35.67 E-value=13 Score=30.28 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.0
Q ss_pred cccccCcchHHHHHhHhC
Q psy1365 17 AIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~lG 34 (140)
.|+|||+++|..+++..|
T Consensus 236 gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 579999999999998865
No 93
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=34.65 E-value=14 Score=22.87 Aligned_cols=17 Identities=6% Similarity=0.333 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999964
No 94
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=34.01 E-value=18 Score=22.13 Aligned_cols=18 Identities=0% Similarity=0.086 Sum_probs=13.7
Q ss_pred cCCCCHHHHHHHHHHHhC
Q psy1365 41 AGECSEEEVDKIITIMTN 58 (140)
Q Consensus 41 ~~~Ls~~qi~~L~~~I~~ 58 (140)
-..+|++|+..|..++..
T Consensus 11 Rt~ft~~q~~~Le~~F~~ 28 (70)
T 2da1_A 11 RTRITDDQLRVLRQYFDI 28 (70)
T ss_dssp SCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 345788999999888854
No 95
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=34.00 E-value=25 Score=21.39 Aligned_cols=17 Identities=0% Similarity=0.194 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..+|++|+..|..++..
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQR 24 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45789999999988865
No 96
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=32.80 E-value=11 Score=30.72 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=30.3
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHH
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I 56 (140)
.|+.++|||.++|..|...+.=..-..+.+|.+ ++. +.+.+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~-~~p-~l~ll 98 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHISE-SVP-VLELF 98 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCT-THH-HHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHhh-hhH-HHHHH
Confidence 489999999999999999877666666777743 333 44444
No 97
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=32.17 E-value=32 Score=20.30 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=16.8
Q ss_pred CccCCCCHHHHHHHHHHHhC
Q psy1365 39 KRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 39 ~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+....||++|+..|..+|..
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44478999999999999864
No 98
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=31.84 E-value=32 Score=27.50 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred cccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 15 LTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
+..+.|||+.++.. ++.+||..=.-+..++.+++.+.
T Consensus 180 v~~l~GiG~~~~~~-L~~~Gi~t~~dL~~~~~~~L~~~ 216 (352)
T 1jx4_A 180 IADVPGIGNITAEK-LKKLGINKLVDTLSIEFDKLKGM 216 (352)
T ss_dssp GGGSTTCCHHHHHH-HHTTTCCBGGGGGSSCHHHHHHH
T ss_pred CCcccccCHHHHHH-HHHcCCchHHHHHCCCHHHHHHh
Confidence 68899999988877 48899987666666676666543
No 99
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=31.58 E-value=23 Score=27.24 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=30.4
Q ss_pred hHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccc
Q psy1365 25 FSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFL 69 (140)
Q Consensus 25 ~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~ 69 (140)
....+++.++++ ....+||+++++.+.++.++ +|.-++|.+
T Consensus 214 l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 214 LIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 344566666655 45689999999999888874 477888866
No 100
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=31.36 E-value=28 Score=20.93 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhC
Q psy1365 41 AGECSEEEVDKIITIMTN 58 (140)
Q Consensus 41 ~~~Ls~~qi~~L~~~I~~ 58 (140)
...||++|+..|..+|..
T Consensus 68 ~~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 68 LKGLSDAELKALADFILS 85 (87)
T ss_dssp GGGCCHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 357999999999999864
No 101
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=31.19 E-value=24 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.7
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCCCC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGECS 45 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls 45 (140)
-+..+.|||+.++.. +..+||.. +++|-
T Consensus 185 pv~~l~giG~~~~~~-L~~~Gi~T---igdL~ 212 (221)
T 1im4_A 185 DIDEIPGIGSVLARR-LNELGIQK---LRDIL 212 (221)
T ss_dssp BGGGSTTCCHHHHHH-HHHTTCCB---TTC--
T ss_pred CcccccCCCHHHHHH-HHHcCCCc---HHHHH
Confidence 368899999988877 58999985 55554
No 102
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.07 E-value=20 Score=21.94 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=12.9
Q ss_pred cCCCCHHHHHHHHHHHhC
Q psy1365 41 AGECSEEEVDKIITIMTN 58 (140)
Q Consensus 41 ~~~Ls~~qi~~L~~~I~~ 58 (140)
-..+|++|+..|..++..
T Consensus 11 Rt~ft~~Q~~~Le~~F~~ 28 (70)
T 2djn_A 11 RTIYSSFQLAALQRRFQK 28 (70)
T ss_dssp SCSSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 345678888888877764
No 103
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=30.80 E-value=33 Score=20.62 Aligned_cols=17 Identities=6% Similarity=0.417 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999863
No 104
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=30.52 E-value=18 Score=28.99 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.7
Q ss_pred ccccccCcchHHHHHhHhC
Q psy1365 16 TAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 16 t~IyGIG~~~A~~Ic~~lG 34 (140)
..|+|||+++|..+++..|
T Consensus 238 pGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 238 EGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHcC
Confidence 3689999999999998875
No 105
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=30.32 E-value=19 Score=21.44 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=13.0
Q ss_pred cCCCCHHHHHHHHHHHhC
Q psy1365 41 AGECSEEEVDKIITIMTN 58 (140)
Q Consensus 41 ~~~Ls~~qi~~L~~~I~~ 58 (140)
-..+|++|+..|..++..
T Consensus 7 Rt~ft~~Q~~~Le~~F~~ 24 (61)
T 2hdd_A 7 RTAFSSEQLARLKREFNE 24 (61)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 345788888888887754
No 106
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=30.09 E-value=36 Score=20.42 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=16.1
Q ss_pred CccCCCCHHHHHHHHHHHhC
Q psy1365 39 KRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 39 ~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+..-.||++|+..|..+|..
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44338999999999999864
No 107
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.02 E-value=21 Score=22.49 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..++++|+..|..++..
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2cue_A 12 TSFTQEQIEALEKEFER 28 (80)
T ss_dssp CCSCHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHHhc
Confidence 34677888888777754
No 108
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=30.00 E-value=49 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=31.8
Q ss_pred CcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 22 GRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 22 G~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
-..++..+++.+||++..+..+++.++.+.|...+++
T Consensus 332 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 332 PERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp CHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 3446777899999999999999999999999888865
No 109
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.99 E-value=28 Score=21.09 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHh
Q psy1365 42 GECSEEEVDKIITIMT 57 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~ 57 (140)
..||++|+..|..+|.
T Consensus 62 ~~Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 62 KRYSDEEMKAMADYMS 77 (79)
T ss_pred hhCCHHHHHHHHHHHH
Confidence 5799999999999985
No 110
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.87 E-value=19 Score=23.42 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.2
Q ss_pred ccCCCCHHHHHHHHHHHhC
Q psy1365 40 RAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 40 ~~~~Ls~~qi~~L~~~I~~ 58 (140)
+...+|.+|+..|..++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~ 34 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK 34 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHcc
Confidence 5566899999999888864
No 111
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=29.73 E-value=35 Score=20.63 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=15.8
Q ss_pred CccCCCCHHHHHHHHHHHh
Q psy1365 39 KRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 39 ~~~~~Ls~~qi~~L~~~I~ 57 (140)
+....||++|+..|..+|.
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWIL 77 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4444899999999999986
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=29.57 E-value=9.5 Score=33.06 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=17.2
Q ss_pred eecccccccCcchHHHHHhHhCCCCCC
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLNK 39 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~~ 39 (140)
|-|..|.|||..+|-.|..++|++++-
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~~ 70 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALDD 70 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------CC
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCCC
Confidence 556889999999999999999998753
No 113
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=29.25 E-value=42 Score=21.44 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHh
Q psy1365 43 ECSEEEVDKIITIMT 57 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~ 57 (140)
.+|++|++.|..+..
T Consensus 23 ~ft~~Ql~~Le~F~~ 37 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAE 37 (80)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 478888888884444
No 114
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=29.21 E-value=24 Score=21.57 Aligned_cols=16 Identities=0% Similarity=-0.139 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.+|++|+..|..++..
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHF 23 (68)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcc
Confidence 4788888888888764
No 115
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=28.38 E-value=57 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 26 SNIVLKKADIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 26 A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
...+++.+|+++ .++.+||.+|..+|.+.+.+
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 356688899987 79999999999999998864
No 116
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=28.20 E-value=42 Score=27.10 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred hHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCccccccc
Q psy1365 25 FSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQ 72 (140)
Q Consensus 25 ~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~ 72 (140)
....+++.+|.. .. .+||++++..+.+..++ +|.-++|.+.+.
T Consensus 213 l~~~f~~~~~~~--~~-~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~ 255 (341)
T 1vqz_A 213 LLEYMKKEYPEM--TE-YVFSEEELAEINRIKDT--KFGTWDWNYGKS 255 (341)
T ss_dssp HHHHHHHHCTTC--EE-CCCCHHHHHHHHHHHHH--TTTCHHHHTCCC
T ss_pred HHHHHHHhcCCC--CC-CCCCHHHHHHHHHHHHH--hcCCcccccCCC
Confidence 445666777776 12 78999999999888864 477788876543
No 117
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=28.20 E-value=18 Score=21.20 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.+|++|+..|......
T Consensus 3 ~ft~~Ql~~Le~~F~~ 18 (56)
T 3a03_A 3 SFSRSQVLELERRFLR 18 (56)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3567777777777653
No 118
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=28.16 E-value=31 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.2
Q ss_pred cccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHH
Q psy1365 15 LTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKI 52 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L 52 (140)
+..+.|||+.++.. +..+||..=.-+..++.+++.+.
T Consensus 181 v~~l~GiG~~~~~~-L~~~Gi~t~~dL~~~~~~~L~~~ 217 (354)
T 3bq0_A 181 IDEIPGIGSVLARR-LNELGIQKLRDILSKNYNELEKI 217 (354)
T ss_dssp STTSTTCCHHHHHH-HTTTTCCBGGGGGGSCHHHHHHH
T ss_pred cccccCcCHHHHHH-HHHcCCccHHHHhcCCHHHHHHH
Confidence 68899999988877 48899987555555566655443
No 119
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=28.15 E-value=20 Score=29.44 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=16.8
Q ss_pred cccccCcchHHHHHhHhC
Q psy1365 17 AIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~lG 34 (140)
.|+|||+++|..+++..|
T Consensus 255 GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 788999999999999976
No 120
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=28.07 E-value=35 Score=20.70 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999964
No 121
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=27.95 E-value=28 Score=25.93 Aligned_cols=29 Identities=10% Similarity=-0.029 Sum_probs=25.6
Q ss_pred HHhHhCCCCCCccCCCCHHHHHHHHHHHh
Q psy1365 29 VLKKADIDLNKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 29 Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~ 57 (140)
+++.+|+++..++.+|+.+|...|.+++.
T Consensus 211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~ 239 (245)
T 1yub_A 211 FHQAMKHAKVNNLSTITYEQVLSIFNSYL 239 (245)
T ss_dssp HHHHHHHTTCSCTTSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCChhhCCHHHHHHHHHHHH
Confidence 45788999999999999999999988774
No 122
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=27.87 E-value=28 Score=23.23 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred ecccccccCcchHHHHHhHhCCCC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDL 37 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~ 37 (140)
-|+.+++||+.++..+ .++||+.
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 4789999999988765 7889885
No 123
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=27.86 E-value=20 Score=22.91 Aligned_cols=16 Identities=6% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.+|++|+..|..+++.
T Consensus 23 ~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 23 KFTAEQKERMLALAER 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4789999999888764
No 124
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=27.70 E-value=40 Score=20.38 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLA 81 (88)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 36999999999999964
No 125
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.26 E-value=19 Score=22.61 Aligned_cols=17 Identities=0% Similarity=0.063 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..++++|+..|..++..
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2dmq_A 12 TSFKHHQLRTMKSYFAI 28 (80)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35678888888777753
No 126
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=27.11 E-value=29 Score=21.01 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHh
Q psy1365 42 GECSEEEVDKIITIMT 57 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~ 57 (140)
..||++|+..|..+|.
T Consensus 63 ~~Ls~~ei~~l~~yl~ 78 (81)
T 1a56_A 63 VNVSDADAKALADWIL 78 (81)
T ss_dssp CSSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5899999999999985
No 127
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=26.93 E-value=42 Score=20.04 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999863
No 128
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=26.79 E-value=42 Score=20.30 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45999999999999863
No 129
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=26.77 E-value=54 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.2
Q ss_pred cCCCCHHHHHHHHHHHhC
Q psy1365 41 AGECSEEEVDKIITIMTN 58 (140)
Q Consensus 41 ~~~Ls~~qi~~L~~~I~~ 58 (140)
...||++|+..|..+|..
T Consensus 80 ~~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 80 YASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGGCCHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 346999999999999864
No 130
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=26.27 E-value=1.2e+02 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=26.8
Q ss_pred cchHHHHHhHhCCCC------CCccCCCCHHHHHHHHHHHh
Q psy1365 23 RRFSNIVLKKADIDL------NKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 23 ~~~A~~Ic~~lGI~~------~~~~~~Ls~~qi~~L~~~I~ 57 (140)
+..|..|.+.+|+.+ ...+|.+|-+||..|.+.-.
T Consensus 3 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~ 43 (67)
T 1qa6_A 3 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKM 43 (67)
T ss_dssp SCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHG
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHH
Confidence 356677888888865 34689999999999977653
No 131
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=26.21 E-value=20 Score=21.83 Aligned_cols=17 Identities=0% Similarity=0.094 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..+|++|+..|..++..
T Consensus 12 t~ft~~q~~~Le~~F~~ 28 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDA 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 35788888888877754
No 132
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=26.21 E-value=45 Score=20.44 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999964
No 133
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=26.15 E-value=28 Score=27.85 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=27.3
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHH
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDK 51 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~ 51 (140)
-+..+.|||+.++..+ ..+||..=.-+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~ 215 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTT 215 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHH
Confidence 3678999999998775 789999655555556666554
No 134
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=26.14 E-value=34 Score=20.56 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..+|++|+..|..++..
T Consensus 8 t~ft~~q~~~Le~~F~~ 24 (66)
T 1bw5_A 8 TVLNEKQLHTLRTCYAA 24 (66)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 44677888888777753
No 135
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=26.10 E-value=32 Score=23.14 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.3
Q ss_pred eecccccccCcchHHHHHhHhCCCC
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDL 37 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~ 37 (140)
-.++.+.|||+..+..+-+ .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3578999999999998876 78885
No 136
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=26.05 E-value=23 Score=28.56 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.7
Q ss_pred cccccCcchHHHHHhHhC
Q psy1365 17 AIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~lG 34 (140)
.|+|||+++|..+++..|
T Consensus 238 Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp CSTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 689999999999999876
No 137
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=25.50 E-value=33 Score=20.18 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHh
Q psy1365 43 ECSEEEVDKIITIMT 57 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~ 57 (140)
.+|++|+..|..++.
T Consensus 4 ~ft~~q~~~Le~~f~ 18 (60)
T 1k61_A 4 RFTKENVRILESWFA 18 (60)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 456777777766664
No 138
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=25.19 E-value=24 Score=30.45 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.2
Q ss_pred eecccccccCcchHHHHHhHhCCCCCCcc
Q psy1365 13 FALTAIKGCGRRFSNIVLKKADIDLNKRA 41 (140)
Q Consensus 13 ~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~ 41 (140)
.-++.+.|||..++..+...+||++-..+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 45788999999999999988899544444
No 139
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=25.16 E-value=19 Score=32.32 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.0
Q ss_pred ccccccCcchHHHHHhHhCCCCCCccCCCCHHHHH
Q psy1365 16 TAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVD 50 (140)
Q Consensus 16 t~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~ 50 (140)
-.|.|+|+.++.++.+..+|..-.-+-+|+.+++.
T Consensus 444 ldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 444 MDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp SCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred cCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 37999999999999999999888888888877654
No 140
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=24.97 E-value=44 Score=20.25 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999863
No 141
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=24.95 E-value=61 Score=19.65 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999964
No 142
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.73 E-value=31 Score=21.48 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=14.2
Q ss_pred ccCCCCHHHHHHHHHHHhC
Q psy1365 40 RAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 40 ~~~~Ls~~qi~~L~~~I~~ 58 (140)
+...+|++|+..|..++..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~ 28 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ 28 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc
Confidence 3445788999998888754
No 143
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.69 E-value=12 Score=24.23 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHhCCCCcCCCcccccccc
Q psy1365 44 CSEEEVDKIITIMTNPRQYKIPDWFLNRQK 73 (140)
Q Consensus 44 Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~ 73 (140)
-+.+|+.+|.+.+.=+ .--|-.||-|||.
T Consensus 30 Ps~eei~~LA~~lgL~-~~VVrVWFqNrRa 58 (71)
T 2da7_A 30 PNSDELLKISIAVGLP-QEFVKEWFEQRKV 58 (71)
T ss_dssp CCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCC-HHHHHHHHhhccc
Confidence 4667788887776432 2234569988874
No 144
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.63 E-value=23 Score=22.32 Aligned_cols=17 Identities=6% Similarity=0.255 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..++++|+..|..++..
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2dms_A 12 TTFTRAQLDVLEALFAK 28 (80)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45788888888777754
No 145
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=24.36 E-value=13 Score=30.51 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=19.8
Q ss_pred ecccccccCcchHHHHHhHhCCC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADID 36 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~ 36 (140)
.|+.++|||.++|..|-+.+.=.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~tG 84 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLEHG 84 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHHcC
Confidence 48999999999999999887633
No 146
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=24.32 E-value=48 Score=20.08 Aligned_cols=17 Identities=0% Similarity=0.091 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..+|++|+..|..++..
T Consensus 7 t~ft~~Q~~~Le~~F~~ 23 (68)
T 1zq3_P 7 TTFTSSQIAELEQHFLQ 23 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHhc
Confidence 34677777777777754
No 147
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=24.29 E-value=58 Score=20.65 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=13.6
Q ss_pred CCccCCCCHHHHHHHHHHHh
Q psy1365 38 NKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 38 ~~~~~~Ls~~qi~~L~~~I~ 57 (140)
..+-..++.+|+..|.+++.
T Consensus 8 rk~R~~~s~~q~~~L~~~f~ 27 (83)
T 2dmn_A 8 KKRKGNLPAESVKILRDWMY 27 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHH
Confidence 34445577888888877764
No 148
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=24.20 E-value=33 Score=21.03 Aligned_cols=15 Identities=0% Similarity=-0.091 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHHHHh
Q psy1365 43 ECSEEEVDKIITIMT 57 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~ 57 (140)
-++.+++..|..++.
T Consensus 4 ~f~~~~~~~L~~~f~ 18 (67)
T 3k2a_A 4 IFPKVATNIMRAWLF 18 (67)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 456666666666654
No 149
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=24.05 E-value=48 Score=21.21 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5999999999999864
No 150
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=23.92 E-value=26 Score=28.68 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.6
Q ss_pred cccccCcchHHHHHhHhC
Q psy1365 17 AIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~lG 34 (140)
.|+|||+.+|..+++..|
T Consensus 236 ~IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp CCTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 478999999999998765
No 151
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=23.87 E-value=50 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.4
Q ss_pred CccCCCCHHHHHHHHHHHh
Q psy1365 39 KRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 39 ~~~~~Ls~~qi~~L~~~I~ 57 (140)
+..-.||++|+..|..+|.
T Consensus 61 Mp~~~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 61 MPPNPVTEEEAKILAEWVL 79 (82)
T ss_dssp CCCCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3333799999999999986
No 152
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.59 E-value=37 Score=24.00 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCC
Q psy1365 42 GECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDG 78 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg 78 (140)
.+|+++|+..|..+|.. ..+..-.-|-++|+-+|
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG 43 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDG 43 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccch
Confidence 47999999999999974 23332234556888888
No 153
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=23.40 E-value=53 Score=20.67 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHh
Q psy1365 42 GECSEEEVDKIITIMT 57 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~ 57 (140)
+.||++|+..|..+|.
T Consensus 85 ~~ls~~ei~~l~~yl~ 100 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYS 100 (103)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH
Confidence 5799999999999985
No 154
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=23.36 E-value=42 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.1
Q ss_pred CccCCCCHHHHHHHHHHHhC
Q psy1365 39 KRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 39 ~~~~~Ls~~qi~~L~~~I~~ 58 (140)
+..-.||++|+..|..+|..
T Consensus 112 Mp~~~Ls~~ei~~l~ayl~~ 131 (146)
T 3o0r_C 112 MPQFHLSEGQVDDLAEFLKW 131 (146)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 44445999999999999963
No 155
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=23.16 E-value=34 Score=23.66 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=10.5
Q ss_pred cccccccCcchHHHHHhHh
Q psy1365 15 LTAIKGCGRRFSNIVLKKA 33 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~l 33 (140)
|..|.|||...|..|+..+
T Consensus 60 L~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 60 LINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHTTTTCSTTHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHH
Confidence 4455666666655555443
No 156
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=23.16 E-value=74 Score=20.46 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=26.3
Q ss_pred cchHHHHHhHhCCCC------CCccCCCCHHHHHHHHHHH
Q psy1365 23 RRFSNIVLKKADIDL------NKRAGECSEEEVDKIITIM 56 (140)
Q Consensus 23 ~~~A~~Ic~~lGI~~------~~~~~~Ls~~qi~~L~~~I 56 (140)
+..|..|.+.+|+.+ ...+|.+|-+|+..|.+.-
T Consensus 8 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K 47 (76)
T 1hc8_A 8 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELK 47 (76)
T ss_dssp CCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHS
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHH
Confidence 456777888888875 3468999999999997764
No 157
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=23.12 E-value=36 Score=20.53 Aligned_cols=16 Identities=0% Similarity=0.252 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.+|++|+..|..++..
T Consensus 7 ~ft~~q~~~Le~~F~~ 22 (67)
T 2k40_A 7 AFTQNQIEVLENVFRV 22 (67)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3566777777666653
No 158
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=23.09 E-value=29 Score=27.63 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=15.1
Q ss_pred cccccCcchHHHHHhH
Q psy1365 17 AIKGCGRRFSNIVLKK 32 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~ 32 (140)
.|+|||+++|..+++.
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 7899999999999988
No 159
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=23.08 E-value=63 Score=29.89 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=35.8
Q ss_pred eeeeeecccccccCcchHHHHHhHhCCCC--------CCccC--CCCHHHHHHHHH
Q psy1365 9 RKVMFALTAIKGCGRRFSNIVLKKADIDL--------NKRAG--ECSEEEVDKIIT 54 (140)
Q Consensus 9 k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~--------~~~~~--~Ls~~qi~~L~~ 54 (140)
..|.++|..|+|||...|..|.+.=.=.| -.++. .++...++.|..
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~ 884 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHH
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHH
Confidence 36999999999999999999987653123 34553 589999998865
No 160
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.60 E-value=30 Score=22.35 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
+.+|.+|+..|.+.+..
T Consensus 8 ~kfT~~Ql~~Le~~F~~ 24 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQ 24 (76)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45788999999888864
No 161
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=22.52 E-value=36 Score=30.52 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=31.6
Q ss_pred cccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHH
Q psy1365 15 LTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDK 51 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~ 51 (140)
.-.|.|+|++++.++.+...|..-.-+-.|+.+++..
T Consensus 448 aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 448 AMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred hcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 3589999999999999999998888888888777544
No 162
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=22.29 E-value=2e+02 Score=21.10 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.4
Q ss_pred CcchHHHHHhHhCCCCCC--------ccCCCCHHHHHHHHHHHh
Q psy1365 22 GRRFSNIVLKKADIDLNK--------RAGECSEEEVDKIITIMT 57 (140)
Q Consensus 22 G~~~A~~Ic~~lGI~~~~--------~~~~Ls~~qi~~L~~~I~ 57 (140)
=+..|..|.+.+|+.+.. .+|.+|-+|+..|.+.-.
T Consensus 74 tPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~ 117 (165)
T 2zkr_i 74 VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMR 117 (165)
T ss_dssp CCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHH
Confidence 467888899999988644 678999999999987653
No 163
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=21.99 E-value=29 Score=28.87 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.3
Q ss_pred cccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHH
Q psy1365 15 LTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDK 51 (140)
Q Consensus 15 Lt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~ 51 (140)
+..+.|||+.++..+ ..+||..=.-+-.++.+++.+
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~~ 271 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILEK 271 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHHH
Confidence 678999999998886 679997644444456666543
No 164
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=21.92 E-value=27 Score=21.78 Aligned_cols=17 Identities=0% Similarity=-0.085 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..+|++|+..|..++..
T Consensus 14 t~ft~~Q~~~Le~~F~~ 30 (77)
T 1nk2_P 14 VLFTKAQTYELERRFRQ 30 (77)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhh
Confidence 34788888888887754
No 165
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=21.91 E-value=52 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999964
No 166
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=21.86 E-value=28 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=16.5
Q ss_pred cccccCcchHHHHHhHhC
Q psy1365 17 AIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 17 ~IyGIG~~~A~~Ic~~lG 34 (140)
.|+|||+.+|..+++..|
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 689999999999999875
No 167
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=21.70 E-value=30 Score=27.49 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=28.9
Q ss_pred ecccccccCcchHHHHHhHhCCCCCCccCC-----------CCHHHHHHHHHHHhC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADIDLNKRAGE-----------CSEEEVDKIITIMTN 58 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~-----------Ls~~qi~~L~~~I~~ 58 (140)
.|..++|||+..+.. |...|+..-..+.+ +++.+...+.++++.
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 478999999998876 45667754333333 455566666666654
No 168
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.60 E-value=34 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=14.8
Q ss_pred ccCCCCHHHHHHHHHHHhC
Q psy1365 40 RAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 40 ~~~~Ls~~qi~~L~~~I~~ 58 (140)
+....|.+|+..|+..+..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~ 32 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN 32 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHh
Confidence 4557899999999888764
No 169
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=21.47 E-value=16 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=19.7
Q ss_pred ecccccccCcchHHHHHhHhCCC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKADID 36 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lGI~ 36 (140)
.|+.++|||..+|..|-+.+.=.
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~tG 103 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIEDG 103 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCcHHHHHHHHHHHHcC
Confidence 48999999999999999886533
No 170
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=21.26 E-value=61 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhC
Q psy1365 43 ECSEEEVDKIITIMTN 58 (140)
Q Consensus 43 ~Ls~~qi~~L~~~I~~ 58 (140)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999863
No 171
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=21.18 E-value=33 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.1
Q ss_pred ccccccCcchHHHHHhHhC
Q psy1365 16 TAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 16 t~IyGIG~~~A~~Ic~~lG 34 (140)
..|+|||+++|..+++..+
T Consensus 228 pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCC
T ss_pred CCCCCeeHHHHHHHHHHhC
Confidence 4799999999999999885
No 172
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=21.00 E-value=80 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHhC
Q psy1365 34 DIDLNKRAGECSEEEVDKIITIMTN 58 (140)
Q Consensus 34 GI~~~~~~~~Ls~~qi~~L~~~I~~ 58 (140)
-+||+..-+..|+||-+.|.++++.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~ 40 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIK 40 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 173
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=21.00 E-value=30 Score=21.85 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy1365 42 GECSEEEVDKIITIMTN 58 (140)
Q Consensus 42 ~~Ls~~qi~~L~~~I~~ 58 (140)
..++++|+..|..++..
T Consensus 27 t~ft~~Q~~~Le~~F~~ 43 (84)
T 2kt0_A 27 TVFSSTQLCVLNDRFQR 43 (84)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45788888888888754
No 174
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=20.63 E-value=38 Score=26.72 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=20.3
Q ss_pred eeeeccc-ccccCcchHHHH-HhHhCCC
Q psy1365 11 VMFALTA-IKGCGRRFSNIV-LKKADID 36 (140)
Q Consensus 11 v~~ALt~-IyGIG~~~A~~I-c~~lGI~ 36 (140)
+..+|.. +.|+|+..|..| |.++|.+
T Consensus 190 l~~~l~~~~~G~s~~la~El~~~ra~~~ 217 (288)
T 3doa_A 190 IAKQLLNQFEGFSPLITNEIVSRRQFMT 217 (288)
T ss_dssp HHHHHHHHBTTCCHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHcCCc
Confidence 4455644 459999999999 9999964
No 175
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=20.52 E-value=31 Score=27.88 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=18.9
Q ss_pred ecccccccCcchHHHHHhHhC
Q psy1365 14 ALTAIKGCGRRFSNIVLKKAD 34 (140)
Q Consensus 14 ALt~IyGIG~~~A~~Ic~~lG 34 (140)
.|+.++|||..+|..|-..+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998865
No 176
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=20.38 E-value=1.4e+02 Score=19.16 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.7
Q ss_pred CCccCCCCHHHHHHHHHHHh
Q psy1365 38 NKRAGECSEEEVDKIITIMT 57 (140)
Q Consensus 38 ~~~~~~Ls~~qi~~L~~~I~ 57 (140)
.+....||++|+..|..+|.
T Consensus 99 ~Mp~~~Ls~~ei~~l~~Yl~ 118 (124)
T 3cp5_A 99 MMTDMALSEEQARAILEYLR 118 (124)
T ss_dssp CCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 45556899999999999985
No 177
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.19 E-value=1e+02 Score=18.17 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcc
Q psy1365 34 DIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDW 67 (140)
Q Consensus 34 GI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w 67 (140)
|-+|+..-+..|++|-..|.++++. |....|
T Consensus 1 gss~~~~~~~WT~eED~~L~~~v~~---~G~~~W 31 (60)
T 1x41_A 1 GSSGSSGDPSWTAQEEMALLEAVMD---CGFGNW 31 (60)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHH---TCTTCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---HCcCcH
Confidence 4467777888999999999999985 555567
Done!