BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13658
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 98/194 (50%), Positives = 136/194 (70%), Gaps = 10/194 (5%)
Query: 4 HAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCS 63
HAV VWE+ +R + W P++P V+Q +ERAH+K LT V+LSDADP+L+ Y++N+ T+ Q S
Sbjct: 44 HAVCVWEFESRGK-WLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQES 102
Query: 64 EIDGA-----ITNVRRSFYPPDSPAGKGARWEWEG---DVHGEWHAYDMQAQCLIEYSWA 115
E + A VRR FY P SPAGKG +WEW G D + +W Y+M QC+IE +WA
Sbjct: 103 EAETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYNMHVQCIIEDAWA 162
Query: 116 KGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQMAEIQG 175
+G+QT+D+ TH+G PY +NFCNLTQ+R +G +R+IRRTQQAPYPL+KL+ Q +++
Sbjct: 163 RGEQTLDLCNTHIGLPYTINFCNLTQLRQPSGPMRSIRRTQQAPYPLVKLTPQQANQLKS 222
Query: 176 QMSASQGAVTMTTP 189
SAS + T P
Sbjct: 223 N-SASVSSQYNTLP 235
>sp|Q6PDK8|DTX4_MOUSE E3 ubiquitin-protein ligase DTX4 OS=Mus musculus GN=Dtx4 PE=1 SV=2
Length = 616
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 5 AVVVWEWLNRNRRWRPFTPEVTQLIE---RAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
AVVVWEWLN + RWRP++P V+ IE RA + SV+L D L Y I+L ++ Q
Sbjct: 6 AVVVWEWLNEHGRWRPYSPAVSHHIEAVVRAGPRAGGSVVLGQVDSRLAPYIIDLQSMNQ 65
Query: 62 CSEIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTI 121
+ G + VRR++Y P S GKG WEWE D +G W YDM+ I+Y++ K I
Sbjct: 66 FRQDTGTLRPVRRNYYDPSSAPGKGVVWEWEND-NGSWTPYDMEVGITIQYAYEKQHPWI 124
Query: 122 DISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQMAEIQGQMSASQ 181
D+ T +GF YI++F + Q+ T R +RR YP++ T M + Q S
Sbjct: 125 DL--TSIGFSYIIDFSTMGQINRQTQRQRRVRRRLDLIYPMV---TGTMPKTQ-SWPVSP 178
Query: 182 GAVTMTTPGKKCKHTTSSNITRTLRNIFHGPVHP 215
G T ++P C + + HG P
Sbjct: 179 GPAT-SSPAPPCSCPQCVLVMSVKAAVVHGGTGP 211
>sp|Q9Y2E6|DTX4_HUMAN E3 ubiquitin-protein ligase DTX4 OS=Homo sapiens GN=DTX4 PE=1 SV=2
Length = 619
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 5 AVVVWEWLNRNRRWRPFTPEVTQLIE---RAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
AVVVWEWLN + RWRP++P V+ IE RA + SV+L D L Y I+L ++ Q
Sbjct: 6 AVVVWEWLNEHGRWRPYSPAVSHHIEAVVRAGPRAGGSVVLGQVDSRLAPYIIDLQSMNQ 65
Query: 62 CSEIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTI 121
+ G + VRR++Y P S GKG WEWE D +G W YDM+ I++++ K I
Sbjct: 66 FRQDTGTLRPVRRNYYDPSSAPGKGVVWEWEND-NGSWTPYDMEVGITIQHAYEKQHPWI 124
Query: 122 DISKTHLGFPYILNFCNLTQV 142
D+ T +GF Y+++F + Q+
Sbjct: 125 DL--TSIGFSYVIDFNTMGQI 143
>sp|Q86Y01|DTX1_HUMAN E3 ubiquitin-protein ligase DTX1 OS=Homo sapiens GN=DTX1 PE=1 SV=1
Length = 620
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 6 VVVWEWLNRNRRWRPFTPEVTQLIERAHSKNL-TSVILSDADPNLQNYFINLHTLQQCSE 64
VVVWEWLN + RWRP+T V IE ++ SV+L D L Y I+L ++ Q +
Sbjct: 25 VVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSVVLGQVDAQLVPYIIDLQSMHQFRQ 84
Query: 65 IDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDIS 124
G + VRR+FY P S GKG WEWE D G W AYDM I+ ++ K +D+S
Sbjct: 85 DTGTMRPVRRNFYDPSSAPGKGIVWEWEND-GGAWTAYDMDICITIQNAYEKQHPWLDLS 143
Query: 125 KTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPL 162
LGF Y++ F +++Q+ T R +RR YPL
Sbjct: 144 S--LGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPL 179
>sp|Q61010|DTX1_MOUSE E3 ubiquitin-protein ligase DTX1 OS=Mus musculus GN=Dtx1 PE=1 SV=2
Length = 627
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 6 VVVWEWLNRNRRWRPFTPEVTQLIERAHSKNL-TSVILSDADPNLQNYFINLHTLQQCSE 64
VVVWEWLN + RWRP+T V IE ++ SV+L D L Y I+L ++ Q +
Sbjct: 25 VVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSVVLGQVDAQLVPYIIDLQSMHQFRQ 84
Query: 65 IDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDIS 124
G + VRR+FY P S GKG WEWE D G W AYDM I+ ++ K +D+S
Sbjct: 85 DTGTMRPVRRNFYDPSSAPGKGIVWEWEND-GGAWTAYDMDICITIQNAYEKQHPWLDLS 143
Query: 125 KTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPL 162
LGF Y++ F +++Q+ T R +RR YPL
Sbjct: 144 S--LGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPL 179
>sp|Q8AW93|DTX1_XENLA E3 ubiquitin-protein ligase DTX1 OS=Xenopus laevis GN=dtx1 PE=2
SV=1
Length = 623
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 6 VVVWEWLNRNRRWRPFTPEVTQLIERA-HSKNLTSVILSDADPNLQNYFINLHTLQQCSE 64
VVVWEWLN + RWRP+T V IE A V L D L Y I+L T+ Q +
Sbjct: 24 VVVWEWLNEHGRWRPYTATVCHHIENALREDGRGRVALGQVDAQLTPYVIDLQTMHQYRQ 83
Query: 65 IDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDIS 124
G I VRR+F+ P S GKG WEWE D G W YD + I+ ++ K +D+
Sbjct: 84 DTGTIRPVRRNFFEPSSAPGKGIVWEWENDA-GSWTPYDTEICIAIQNAYEKHHPYLDL- 141
Query: 125 KTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPL 162
T LGF Y+++F ++ QV T R +RR YPL
Sbjct: 142 -TTLGFCYLVHFHSMCQVNRQTHRKRRLRRRMDLAYPL 178
>sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2
PE=1 SV=3
Length = 622
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 2 SNHAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKN----------LTSVILSDADPNLQN 51
S AV VWEW + W P++ V IE+ + S+ L ADP+L
Sbjct: 15 SPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRFGLGSLAHSIPLGQADPSLAP 74
Query: 52 YFINLHTLQQCSEIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIE 111
Y I+L + Q + G + VRR +P S G+G WEW D G W AY+ +E
Sbjct: 75 YIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEWLSD-DGSWTAYEASVCDYLE 133
Query: 112 YSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKL 165
A+G+Q +D++ LG+ Y +N+ TQ T+ R++RR PYP+ +
Sbjct: 134 QQVARGNQLVDLAP--LGYNYTVNYTTHTQTNKTSSFCRSVRRQAGPPYPVTTI 185
>sp|Q8R3P2|DTX2_MOUSE Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus GN=Dtx2
PE=1 SV=2
Length = 619
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 2 SNHAVVVWEWLNRNRRWRPFTPEVTQLIE------RAHSKNLTS----VILSDADPNLQN 51
S+ V VWEW + W P++ V IE R L S + L ADP+L
Sbjct: 15 SHVVVAVWEWQDGLGIWHPYSATVCSFIEQHFVRQRGQHFGLGSLAHSIPLGQADPSLAP 74
Query: 52 YFINLHTLQQCSEIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIE 111
Y I+L + Q + G + +VRR + +S G+G WEW GD G W AY+ + +E
Sbjct: 75 YIIDLPSWTQFRQNTGTMRSVRRHLFSQNSAPGQGIVWEWLGD-DGSWVAYEARICDYLE 133
Query: 112 YSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPL 162
A+G Q +D++ LG+ Y +N+ LTQ T+ R++RR YP+
Sbjct: 134 QQVARGIQVVDLAP--LGYNYTVNYATLTQTNKTSSFCRSVRRQVGPVYPV 182
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 86 GARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNT 145
GA W+W D G WH Y+ +IE + G+ I +S LG Y ++F ++ Q+
Sbjct: 766 GAIWQWRDD-RGLWHPYNRIDSRIIEAAHQVGEDEISLST--LGRVYTIDFNSMQQINED 822
Query: 146 TGNVRNIRRTQQAPYPLIKLSTNQMAEIQGQMSASQ 181
TG R I+R P PL +T+ +E++ + +Q
Sbjct: 823 TGTARAIQRK---PNPLANSNTSGYSELKKDDARAQ 855
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 7 VVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEID 66
+W+W + W P+ +++IE AH + LS + Y I+ +++QQ +E
Sbjct: 767 AIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDEISLSTLG---RVYTIDFNSMQQINEDT 823
Query: 67 GAITNVRRSFYP 78
G ++R P
Sbjct: 824 GTARAIQRKPNP 835
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 86 GARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNT 145
GA W+W D G WH Y+ +IE + G+ I +S LG Y ++F ++ Q+
Sbjct: 766 GAIWQWRDD-RGLWHPYNRIDSRIIEAAHQVGEDEISLST--LGRVYTIDFNSMQQINED 822
Query: 146 TGNVRNIRRTQQAPYPLIKLSTNQMAEIQGQMSASQ 181
TG R I+R P PL +T+ ++++ + +Q
Sbjct: 823 TGTARAIQRK---PNPLANTNTSGYSDLKKDDARAQ 855
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 7 VVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEID 66
+W+W + W P+ +++IE AH + LS + Y I+ +++QQ +E
Sbjct: 767 AIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDEISLSTLG---RVYTIDFNSMQQINEDT 823
Query: 67 GAITNVRRSFYP 78
G ++R P
Sbjct: 824 GTARAIQRKPNP 835
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 86 GARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNT 145
GA W+W D G WH Y +IE + G+ I +S LG Y ++F ++ Q+
Sbjct: 802 GAIWQWRDD-RGLWHPYSRIDSRIIEAAHQVGEDEISLST--LGRVYTIDFNSMQQINED 858
Query: 146 TGNVRNIRRTQQAPYPLIKLSTNQMAEIQ 174
TG R I+R P P+ +T +E++
Sbjct: 859 TGTARAIQRK---PNPVANANTTGHSELK 884
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 7 VVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEID 66
+W+W + W P++ +++IE AH + LS + Y I+ +++QQ +E
Sbjct: 803 AIWQWRDDRGLWHPYSRIDSRIIEAAHQVGEDEISLSTLG---RVYTIDFNSMQQINEDT 859
Query: 67 GAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIE 111
G ++R P + G H E D +AQ + E
Sbjct: 860 GTARAIQRKPNPVANANTTG---------HSELKRDDARAQLMKE 895
>sp|E0VLV0|TRM5_PEDHC tRNA (guanine(37)-N1)-methyltransferase OS=Pediculus humanus subsp.
corporis GN=PHUM294360 PE=3 SV=1
Length = 463
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 112 YSWAKGDQTID-ISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQM 170
Y +AK D+++D I KTHL + + N VRN + R T Q P ++ + + +
Sbjct: 344 YFFAKKDESLDEIFKTHLEYKFDENEYEFNFVRNVSNGKNMHRVTFQMPLSILMIDNSDI 403
Query: 171 AE-----IQGQMSASQGAVTMTTPGKKCKHTTSSNITR 203
+E I + A A T KK K T + NI++
Sbjct: 404 SEPLPKRISKSLKAKTKAKEYTGNLKKIKETLNKNISK 441
>sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3
Length = 4374
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 89 WEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGN 148
W W D G W +Y I+ +W G+ ++ + Y + F + QV TGN
Sbjct: 1617 WRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRR--YTVQFTTMVQVNEETGN 1674
Query: 149 VRNIRRT 155
R + T
Sbjct: 1675 RRPVMLT 1681
>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=5
Length = 4377
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 89 WEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGN 148
W W D G W +Y I+ +W G+ ++ + Y + F + QV TGN
Sbjct: 1617 WRWFDDRSGRWCSYSASNNSTIDSAWKSGETSVRFTAGRRR--YTVQFTTMVQVNEETGN 1674
Query: 149 VRNIRRT 155
R + T
Sbjct: 1675 RRPVMLT 1681
>sp|O93257|XRCC6_CHICK X-ray repair cross-complementing protein 5 OS=Gallus gallus
GN=XRCC6 PE=2 SV=1
Length = 632
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 33 HSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSFYPPD-SPAGKGARWEW 91
H +NL ++ L +P T + + + ++ YPPD SP GK A+ +
Sbjct: 508 HFRNLEALALDMLEPEQAEDLTMPKTEEMSRRLGNLVEEFKQLVYPPDYSPEGKAAKRKQ 567
Query: 92 EGDVHGE 98
GD E
Sbjct: 568 AGDAQAE 574
>sp|Q04564|TR2M_AGRVS Tryptophan 2-monooxygenase OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=iaaM PE=3 SV=1
Length = 723
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 21 FTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSFYPPD 80
F+ +V Q IE +H + + + QN F L C G V Y PD
Sbjct: 515 FSYDVNQAIENSHMTGSSKLFVLT-----QNKFWKAEELPSCILTTGVAKAVYCLDYEPD 569
Query: 81 SPAGKG---ARWEWEGDVH 96
P+GKG + WE D H
Sbjct: 570 KPSGKGLVLLSYTWEDDSH 588
>sp|Q9PR63|GYRA_UREPA DNA gyrase subunit A OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gyrA PE=3 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 25 VTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSFYPPDSPAG 84
+T+ +E + SVI++ A P++++ F +H + + +T+ D P
Sbjct: 30 ITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTH--------DKPYK 81
Query: 85 KGARWEWEGDVHGEWHAYDMQA 106
K ARW GDV G++H + QA
Sbjct: 82 KSARWV--GDVIGKYHPHGDQA 101
>sp|Q9NR21|PAR11_HUMAN Poly [ADP-ribose] polymerase 11 OS=Homo sapiens GN=PARP11 PE=1 SV=1
Length = 331
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 97 GEWHAY--DMQAQCL-----IEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNV 149
G+WH + D +QC IE S+ K + IS T F Y ++F + Q+ TTG
Sbjct: 36 GKWHMFQPDTNSQCSVSSEDIEKSF-KTNPCGSISFTTSKFSYKIDFAEMKQMNLTTGKQ 94
Query: 150 RNIRRTQQAPYPLIKLS 166
R I+R AP+ + S
Sbjct: 95 RLIKR---APFSISAFS 108
>sp|C0HBT3|RN146_SALSA E3 ubiquitin-protein ligase rnf146 OS=Salmo salar GN=rnf146 PE=2
SV=1
Length = 349
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 83 AGKGA----RWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCN 138
G+GA W +EG W YD + +E +++KG +T ++ GF Y+ + N
Sbjct: 101 GGRGATGDNAWYYEG--RNGWWQYDERTSRELEDAFSKGKKTAEM--LIAGFLYVADLEN 156
Query: 139 LTQV-RNTTGNVRNIRR--TQQAPYPLIKLSTNQMAEIQGQMSASQG 182
+ Q RN G R I+R + L + +QG +A +G
Sbjct: 157 MVQYRRNEHGRRRKIKRDVVDIPKKGVAGLRLDTEGGVQGSAAAGRG 203
>sp|A2ARZ3|FSIP2_MOUSE Fibrous sheath-interacting protein 2 OS=Mus musculus GN=Fsip2 PE=1
SV=3
Length = 6995
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 34 SKNLTSVILSDADPN-LQNYFINLHTLQQCSEIDGAITNVRRS--FYPPDSPAG 84
SK + ++L + N LQNYF T QC+E+D + N+ + P P+G
Sbjct: 6211 SKTIVDLVLREVTGNQLQNYFGGELTPIQCAEVDNVVENILTNVVLTTPSQPSG 6264
>sp|A9KQC8|Y047_CLOPH Nucleoid-associated protein Cphy_0047 OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_0047 PE=3 SV=1
Length = 119
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 144 NTTGNVRNIRRTQQAPYPLIKLSTNQMAEIQGQMSASQGAVTMTTPGKK 192
N GN+ N+ + Q ++ T +M E Q + +A GAVT+T GKK
Sbjct: 11 NMPGNMNNLMKQAQRMQKQMEDKTKEMEEKQWEATAGGGAVTVTVSGKK 59
>sp|Q46836|PPPA_ECOLI Leader peptidase PppA OS=Escherichia coli (strain K12) GN=pppA PE=1
SV=2
Length = 269
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 160 YPLIKLSTNQMAEIQGQMSASQGAVTMTTPGKKCKH 195
YP+ + QMAE G+MS++Q +++ P C H
Sbjct: 35 YPI--MLRQQMAEFHGEMSSAQSKISLALPRSHCPH 68
>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
Length = 5147
Score = 30.4 bits (67), Expect = 9.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 62 CSEIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGE--WHAYDMQAQCLIE 111
C +I G +T PPD P G W EG V G W + Q CL++
Sbjct: 1828 CDDISGQVT------CPPDWPCGSPGCWCPEGQVLGSEGWCVWPRQCPCLVD 1873
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,005,162
Number of Sequences: 539616
Number of extensions: 3458789
Number of successful extensions: 7664
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 7609
Number of HSP's gapped (non-prelim): 35
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)