Query psy13658
Match_columns 228
No_of_seqs 140 out of 274
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:03:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00678 WWE Domain in Delte 99.9 1.4E-21 3.1E-26 141.6 8.1 73 87-162 1-73 (73)
2 PF02825 WWE: WWE domain; Int 99.8 1.3E-20 2.9E-25 135.6 6.3 70 82-154 3-72 (72)
3 smart00678 WWE Domain in Delte 99.8 3.7E-19 8E-24 128.9 7.8 71 7-80 1-71 (73)
4 PF02825 WWE: WWE domain; Int 99.7 3E-18 6.5E-23 123.3 6.4 68 4-74 5-72 (72)
5 KOG0168|consensus 94.5 0.012 2.6E-07 60.0 0.4 45 83-157 490-534 (1051)
6 KOG0824|consensus 93.8 0.12 2.7E-06 47.1 5.4 141 7-155 113-299 (324)
7 KOG0168|consensus 88.4 0.16 3.4E-06 52.2 0.4 43 4-76 491-533 (1051)
8 KOG2308|consensus 88.2 0.48 1E-05 48.1 3.6 85 16-117 124-209 (741)
9 COG4479 Uncharacterized protei 33.0 40 0.00086 24.6 2.3 34 193-227 35-68 (74)
10 COG3676 Transposase and inacti 32.4 7.6 0.00017 31.2 -1.6 26 202-227 52-77 (126)
11 KOG0824|consensus 31.1 26 0.00056 32.3 1.3 56 6-64 230-285 (324)
12 PF11225 DUF3024: Protein of u 20.7 1.1E+02 0.0025 20.7 2.7 28 85-113 16-44 (57)
No 1
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=99.86 E-value=1.4e-21 Score=141.59 Aligned_cols=73 Identities=34% Similarity=0.698 Sum_probs=68.7
Q ss_pred eeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecCCCCEeeeeecCCCCCCc
Q psy13658 87 ARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPL 162 (228)
Q Consensus 87 ~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~tg~~R~VRR~~~~~yP~ 162 (228)
++|+|+++.| .|++|+..+|..||+||+++.+.+++ .+.|..|+|||.+|+|+|.+||+.|+|||....+||.
T Consensus 1 ~~W~w~~~~g-~W~~Y~~~~~~~IE~ay~~~~~~~~v--~~~g~~Y~IdF~~m~Q~n~~t~~~R~VrR~~~~~~~~ 73 (73)
T smart00678 1 YVWEYEGRNG-KWWPYDPRVSEDIEEAYAAGKKLCEL--SICGFPYTIDFNAMTQYNQATGTTRKVRRVTYSPYSK 73 (73)
T ss_pred CEEEEECCCC-CeeeCChHHHHHHHHHHHcCCCeEEE--EECCeEEEEECcCCEEECCCCCCccceEeccCCCCCC
Confidence 5899999998 89999999999999999999999898 7778999999999999999999999999999888873
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=99.82 E-value=1.3e-20 Score=135.57 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=62.4
Q ss_pred CCCCceeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecCCCCEeeeee
Q psy13658 82 PAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRR 154 (228)
Q Consensus 82 ~~~~~~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~tg~~R~VRR 154 (228)
.+...++|+|.++.| .|++|+.+++..||+||++|.+.+.| .+.|..|+|||..|+|+|.+||+.|+|||
T Consensus 3 ~~~~~~~W~w~~~~~-~W~~Y~~~~~~~IE~a~~~~~~~~~~--~~~~~~Y~IDF~~M~Q~n~~t~~~R~IrR 72 (72)
T PF02825_consen 3 PPGKKYVWQWEDDDG-GWHPYDPEVSEIIEEAYQNGKKSCQL--SIGGRPYTIDFKSMTQINKDTGTTRPIRR 72 (72)
T ss_dssp HHHCCEEEEEESETS-SEEE--HHHHHHHHHHHHTTTSEEEE--EETTEEEEEETTTTEEEESSSS-EEEEEE
T ss_pred CCCCCEEEEEECCCC-cEEeCCcHHHHHHHHHHHcCCcEEEE--EeCCcEEEEEChhcEEEeCCCCCEeecCC
Confidence 345678999997777 89999999999999999999999999 88999999999999999999999999998
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=99.79 E-value=3.7e-19 Score=128.92 Aligned_cols=71 Identities=32% Similarity=0.553 Sum_probs=63.2
Q ss_pred EEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCceEecccCCCCCC
Q psy13658 7 VVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSFYPPD 80 (228)
Q Consensus 7 vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR~~~pp~ 80 (228)
++|||+++.|.|.+|++.+|..||+||+.+.+.+.+... +..|+|||++|+|.|.+||+.|+|||..+++.
T Consensus 1 ~~W~w~~~~g~W~~Y~~~~~~~IE~ay~~~~~~~~v~~~---g~~Y~IdF~~m~Q~n~~t~~~R~VrR~~~~~~ 71 (73)
T smart00678 1 YVWEYEGRNGKWWPYDPRVSEDIEEAYAAGKKLCELSIC---GFPYTIDFNAMTQYNQATGTTRKVRRVTYSPY 71 (73)
T ss_pred CEEEEECCCCCeeeCChHHHHHHHHHHHcCCCeEEEEEC---CeEEEEECcCCEEECCCCCCccceEeccCCCC
Confidence 489999988999999999999999999988777776654 35999999999999999999999999987654
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=99.74 E-value=3e-18 Score=123.26 Aligned_cols=68 Identities=29% Similarity=0.588 Sum_probs=59.2
Q ss_pred ccEEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCceEeccc
Q psy13658 4 HAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRR 74 (228)
Q Consensus 4 ~~~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR 74 (228)
...++|+|++++|.|.+|++.++..||+||+++...+.|... +..|+|||.+|+|.|.+|++.|+|||
T Consensus 5 ~~~~~W~w~~~~~~W~~Y~~~~~~~IE~a~~~~~~~~~~~~~---~~~Y~IDF~~M~Q~n~~t~~~R~IrR 72 (72)
T PF02825_consen 5 GKKYVWQWEDDDGGWHPYDPEVSEIIEEAYQNGKKSCQLSIG---GRPYTIDFKSMTQINKDTGTTRPIRR 72 (72)
T ss_dssp HCCEEEEEESETSSEEE--HHHHHHHHHHHHTTTSEEEEEET---TEEEEEETTTTEEEESSSS-EEEEEE
T ss_pred CCCEEEEEECCCCcEEeCCcHHHHHHHHHHHcCCcEEEEEeC---CcEEEEEChhcEEEeCCCCCEeecCC
Confidence 457899999778999999999999999999999888888653 46899999999999999999999998
No 5
>KOG0168|consensus
Probab=94.48 E-value=0.012 Score=59.95 Aligned_cols=45 Identities=27% Similarity=0.593 Sum_probs=40.8
Q ss_pred CCCceeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecCCCCEeeeeecCC
Q psy13658 83 AGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQ 157 (228)
Q Consensus 83 ~~~~~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~tg~~R~VRR~~~ 157 (228)
...++.|+|.+|.| .|++|..-.+..|| |+|.+|||.|++.|...
T Consensus 490 ~~~~~~~~~~d~~~-s~~~~~~~~~ri~~-----------------------------q~~~~~~t~~~~~dkl~ 534 (1051)
T KOG0168|consen 490 LADELLWQWRDDRG-SWHTYTNIDSRIIE-----------------------------QINEDTGTSRKQQDKLN 534 (1051)
T ss_pred ccccccccCccccc-cccccchhhhhhhh-----------------------------hhccCcccchhhhhhcC
Confidence 45688999999999 99999999888887 99999999999999876
No 6
>KOG0824|consensus
Probab=93.79 E-value=0.12 Score=47.09 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=91.4
Q ss_pred EEEEEEeC-CCceEeCC---hHHHHHHHHhhcCC--CCeEEeccCCCCCcceEEECCCceEeecCC-CceEecccCC---
Q psy13658 7 VVWEWLNR-NRRWRPFT---PEVTQLIERAHSKN--LTSVILSDADPNLQNYFINLHTLQQCSEID-GAITNVRRSF--- 76 (228)
Q Consensus 7 vvWEw~~d-~g~W~pY~---~~v~~~IE~ay~~~--~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~T-g~~R~VRR~~--- 76 (228)
-.|++-+. .|.|..|. +..-..+++.+-.. ..+..|. +.++.+||+..-|+.+.. +..+.|-+..
T Consensus 113 g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~a-----G~p~~~d~~q~nq~peg~a~~a~~v~~vs~d~ 187 (324)
T KOG0824|consen 113 GKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLA-----GMPIRYDLDQHNQCPEGYADGAECVDMVSRDH 187 (324)
T ss_pred eeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCceec-----cCceeecccccccCCCCcCCcccchhhccccc
Confidence 45666652 35599998 65667888888543 2232332 358999998888877665 2334444321
Q ss_pred C-------------C------CCCCC------------CCceeEEE--EeCCCCCeEECChhhhHHHHHHHhhCCCcEEe
Q psy13658 77 Y-------------P------PDSPA------------GKGARWEW--EGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDI 123 (228)
Q Consensus 77 ~-------------p------p~S~~------------~~~~~WeW--~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l 123 (228)
+ | +++.+ ....+=+| +.... .|.+|+...-..||.-|.+....+..
T Consensus 188 fd~ssVkgq~g~~~pt~~~~~fn~~~~~s~~~~~~skrs~R~kg~wiyeS~sd-g~~r~d~~~ek~le~~~~a~~e~~~m 266 (324)
T KOG0824|consen 188 FDKSSVKGQGGLSDPTVQFCIFNSEPTKSKPTLRRSKRSTREKGYWIYESSSD-GYYRYDPKDEKYLEECYCAKMETCVM 266 (324)
T ss_pred cCccccccccccccccccccccCccccccccCcccccccccceeEEeeccCcC-CceecChhHHHHHHHHHhhcCcceee
Confidence 1 0 11111 11234444 44444 69999999999999999999888777
Q ss_pred eccCCCCcEEEEcCCceEeec---CCCCEeeeeec
Q psy13658 124 SKTHLGFPYILNFCNLTQVRN---TTGNVRNIRRT 155 (228)
Q Consensus 124 ~~~~~g~~Y~IDF~~M~Q~N~---~tg~~R~VRR~ 155 (228)
-+.|..|+|+|-.|.|-+. +--+.|+|-|.
T Consensus 267 --~i~g~~~~l~fv~~~qeq~~n~dr~~rr~i~r~ 299 (324)
T KOG0824|consen 267 --RICGTAMLLNFVDGVQEQVENEDRCTRRKILRI 299 (324)
T ss_pred --eeecchHHHHHHHHhhhhhcCccccchhcCcee
Confidence 7788999999999998654 33355666664
No 7
>KOG0168|consensus
Probab=88.43 E-value=0.16 Score=52.18 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=34.9
Q ss_pred ccEEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCceEecccCC
Q psy13658 4 HAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSF 76 (228)
Q Consensus 4 ~~~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR~~ 76 (228)
...+.|+|.+|.|.|.+|....+..|| |.|++||+.|++.|..
T Consensus 491 ~~~~~~~~~d~~~s~~~~~~~~~ri~~------------------------------q~~~~~~t~~~~~dkl 533 (1051)
T KOG0168|consen 491 ADELLWQWRDDRGSWHTYTNIDSRIIE------------------------------QINEDTGTSRKQQDKL 533 (1051)
T ss_pred cccccccCccccccccccchhhhhhhh------------------------------hhccCcccchhhhhhc
Confidence 347899999999999999997777777 6777888888777754
No 8
>KOG2308|consensus
Probab=88.19 E-value=0.48 Score=48.08 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=60.9
Q ss_pred CceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEe-ecCCCceEecccCCCCCCCCCCCceeEEEEeC
Q psy13658 16 RRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQC-SEIDGAITNVRRSFYPPDSPAGKGARWEWEGD 94 (228)
Q Consensus 16 g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~-n~~Tg~~R~VRR~~~pp~S~~~~~~~WeW~~d 94 (228)
+.|.|.....+..||..++..+.+..+... ++.|.||...=... ..=.|-...|||. .|.+.+
T Consensus 124 ~~~~p~~~~ds~~le~~~~~~~e~~~v~v~---gG~Y~Vd~~~r~~~pvYW~~d~~ev~Rg------------~WF~~~- 187 (741)
T KOG2308|consen 124 STWTPSEHSDSDDLEEGENDDQESPPVVVE---GGLYEVDKENRKCSPVYWSGDEKEVRRG------------TWFFDG- 187 (741)
T ss_pred ccccccccccccccccccccCCccCceeec---CCeeeeeeecccccCCCCCCCcccceee------------eeeecC-
Confidence 579999999999999999966544444332 35899998643321 1111344566664 799888
Q ss_pred CCCCeEECChhhhHHHHHHHhhC
Q psy13658 95 VHGEWHAYDMQAQCLIEYSWAKG 117 (228)
Q Consensus 95 ~g~~W~~Y~~~~s~~IE~ay~~g 117 (228)
.. .|.||+...+..||.+|.+-
T Consensus 188 ~~-~~~P~~e~~s~qlE~~yl~~ 209 (741)
T KOG2308|consen 188 GS-TLQPLEEELSEQLEAEYLNS 209 (741)
T ss_pred CC-ceeeccchhHHHHHHHHHHH
Confidence 33 79999999999999999973
No 9
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.00 E-value=40 Score=24.57 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=25.2
Q ss_pred ccCCCCcchhhhhhhccCCCCCCCChhHHHHHHhh
Q psy13658 193 CKHTTSSNITRTLRNIFHGPVHPMSPVYEDIWRAY 227 (228)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
+|.+.|=.|+-.-|--.++-.|+|+ ++.+||.+|
T Consensus 35 PK~t~Df~~is~YLE~~a~f~~~m~-~FDeiwe~Y 68 (74)
T COG4479 35 PKHTDDFHEISDYLETNADFLFNMS-VFDEIWEEY 68 (74)
T ss_pred CCCCccHHHHHHHHHhcCCcccchh-hHHHHHHHH
Confidence 4555666666666777777777875 889999988
No 10
>COG3676 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=32.43 E-value=7.6 Score=31.24 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=22.7
Q ss_pred hhhhhhccCCCCCCCChhHHHHHHhh
Q psy13658 202 TRTLRNIFHGPVHPMSPVYEDIWRAY 227 (228)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
.+.||.+|.++|-||+.||-|-.++|
T Consensus 52 ~s~il~~~k~Kvk~d~~vytd~~~~~ 77 (126)
T COG3676 52 SSTILPMFKGKVKPDSIVYTDSFKSY 77 (126)
T ss_pred cchHHHHHHhhhcccceEEeeeeccc
Confidence 35788899999999999999987776
No 11
>KOG0824|consensus
Probab=31.07 E-value=26 Score=32.35 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=41.6
Q ss_pred EEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeec
Q psy13658 6 VVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSE 64 (228)
Q Consensus 6 ~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~ 64 (228)
+..|-++.....|.+|+...-+.||..|+.+...+..-.+ +..++++|.-|.|-+.
T Consensus 230 kg~wiyeS~sdg~~r~d~~~ek~le~~~~a~~e~~~m~i~---g~~~~l~fv~~~qeq~ 285 (324)
T KOG0824|consen 230 KGYWIYESSSDGYYRYDPKDEKYLEECYCAKMETCVMRIC---GTAMLLNFVDGVQEQV 285 (324)
T ss_pred eeEEeeccCcCCceecChhHHHHHHHHHhhcCcceeeeee---cchHHHHHHHHhhhhh
Confidence 5567777655558899998999999999887554443333 3589999999988654
No 12
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.75 E-value=1.1e+02 Score=20.73 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=18.4
Q ss_pred CceeEEEEeCCCCCeEECChh-hhHHHHHH
Q psy13658 85 KGARWEWEGDVHGEWHAYDMQ-AQCLIEYS 113 (228)
Q Consensus 85 ~~~~WeW~~d~g~~W~~Y~~~-~s~~IE~a 113 (228)
..|.=+|.+..+ .|++|+.. .+..||.+
T Consensus 16 ~~W~lyw~~~~~-~W~~Y~~~~~~~~L~~~ 44 (57)
T PF11225_consen 16 GCWKLYWMDHDG-KWHPYPPLPESKDLEAL 44 (57)
T ss_pred CEEEEEEECCCC-CEeECCCcccCCCHHHH
Confidence 346668888888 99999932 33344443
Done!