Query psy13658
Match_columns 228
No_of_seqs 140 out of 274
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a90_A Deltex protein; WWE dom 100.0 5.2E-49 1.8E-53 342.0 14.3 164 2-167 21-193 (240)
2 2dk6_A PARP11 protein; structu 99.9 1.1E-22 3.6E-27 156.2 8.8 85 70-162 8-100 (102)
3 3v3l_A E3 ubiquitin-protein li 99.8 1E-18 3.6E-23 129.9 8.5 72 85-161 3-75 (85)
4 1ujr_A Hypothetical protein AK 99.8 4.2E-19 1.4E-23 137.8 5.4 72 81-156 24-96 (110)
5 2dk6_A PARP11 protein; structu 99.7 6.3E-17 2.2E-21 124.0 5.8 70 4-76 17-94 (102)
6 3v3l_A E3 ubiquitin-protein li 99.6 5.6E-16 1.9E-20 115.1 8.1 70 4-77 2-72 (85)
7 2a90_A Deltex protein; WWE dom 99.6 1.2E-15 4.2E-20 132.5 8.3 71 6-77 109-183 (240)
8 1ujr_A Hypothetical protein AK 99.6 3.9E-15 1.3E-19 115.5 8.0 69 5-77 28-97 (110)
9 1x4r_A PARP14 protein; WWE dom 98.7 9.6E-08 3.3E-12 72.4 8.8 71 86-161 26-96 (99)
10 1x4r_A PARP14 protein; WWE dom 98.3 2.2E-06 7.4E-11 64.9 7.1 66 6-76 26-91 (99)
11 1p65_A Nucleocapsid protein; v 36.2 42 0.0014 23.1 3.8 30 108-138 27-56 (73)
No 1
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=100.00 E-value=5.2e-49 Score=341.97 Aligned_cols=164 Identities=55% Similarity=1.078 Sum_probs=148.4
Q ss_pred CCccEEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCc-----eEecccCC
Q psy13658 2 SNHAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGA-----ITNVRRSF 76 (228)
Q Consensus 2 ~~~~~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~-----~R~VRR~~ 76 (228)
+.+++++|||+++ |+|+||++++|+.||++|+++.++|.|+++|+++..|+|||.+|+|+|++||+ .|+|||.+
T Consensus 21 ~~~~v~vWEwqd~-g~W~pYs~~v~~~IE~a~~~~~~sv~l~~~dp~l~~y~IDf~sMtQ~~~dtg~~~~~~~r~VRR~~ 99 (240)
T 2a90_A 21 HAHAVSVWEFESR-GKWLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQESEAETAGSGLLTIGVRRMF 99 (240)
T ss_dssp -CCEEEEEEEEET-TEEEECCHHHHHHHHHHHHTTCCEEEGGGTSTTSTTCEEETTTTEEEC---------CCCBEEEEE
T ss_pred CCCceEEEEEecC-CeEeeCCHHHHHHHHHHhcCCCceEEEeccCCCcCceEEeccccEEEeeccCccccccceeeeecc
Confidence 4678999999997 89999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCCCCceeEEEEe---C-CCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecCCCCEeee
Q psy13658 77 YPPDSPAGKGARWEWEG---D-VHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNI 152 (228)
Q Consensus 77 ~pp~S~~~~~~~WeW~~---d-~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~tg~~R~V 152 (228)
++|+|+++++++|||++ | .| +|++|++++|+.||+||++|.++++|.++++|++|+|||++|+|+|.+||++|+|
T Consensus 100 ~~PsS~~g~g~vWeW~d~~~D~~G-~W~~Y~~~vs~~IE~Ay~~g~~~v~L~~t~~G~~Y~IDF~~MtQ~N~~Tgt~R~V 178 (240)
T 2a90_A 100 YAPSSPAGKGTKWEWSGGSADSNN-DWRPYNMHVQSIIEDAWARGEQTLDLSNTHIGLPYTINFSNLTQLRQPSGPMRSI 178 (240)
T ss_dssp ECTTSHHHHTEEEEEECSSSSCCS-SEEECCHHHHHHHHHHHHTTCSEEEHHHHTSSCCEEEETTTTEEEETTTCCEEEE
T ss_pred ccCCCcCCCccEEEEeCCCCCCCC-ceEECCHHHHHHHHHHHhcCCCcceeeecCCCceEEEECCCcEEEecCCCcEEee
Confidence 99999999999999999 6 47 8999999999999999999999999954488999999999999999999999999
Q ss_pred eecCCCCCCccccCc
Q psy13658 153 RRTQQAPYPLIKLST 167 (228)
Q Consensus 153 RR~~~~~yP~~~~~~ 167 (228)
||++++|||+++..+
T Consensus 179 RRr~~~pyP~~~~~~ 193 (240)
T 2a90_A 179 RRTQQAPYPLVKLTP 193 (240)
T ss_dssp EEEECCCCCEEC---
T ss_pred EecCCCCCccccccc
Confidence 999999999988755
No 2
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=156.23 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=76.3
Q ss_pred EecccCCCCCCCCCCCceeEEEEeCCCCCeEECChhh-------hHHHHHHHhhCC-CcEEeeccCCCCcEEEEcCCceE
Q psy13658 70 TNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQA-------QCLIEYSWAKGD-QTIDISKTHLGFPYILNFCNLTQ 141 (228)
Q Consensus 70 R~VRR~~~pp~S~~~~~~~WeW~~d~g~~W~~Y~~~~-------s~~IE~ay~~g~-~~v~l~~~~~g~~Y~IDF~~M~Q 141 (228)
-+|||+. ..+++|+|||+++.| .|++|++++ |..||+||+.++ +.+.| .++++.|+|||..|+|
T Consensus 8 ~~~~~~~-----~~tt~w~W~W~de~G-~W~~Y~~~~~~~~sv~S~~IE~ay~~~~~~~v~f--~a~~~~Y~IdF~~M~Q 79 (102)
T 2dk6_A 8 NEVDDMD-----TSDTQWGWFYLAECG-KWHMFQPDTNSQCSVSSEDIEKSFKTNPCGSISF--TTSKFSYKIDFAEMKQ 79 (102)
T ss_dssp CCCSSCT-----TCCCCEEEEECCSSS-CCEECCCBSSTTCBCCHHHHHHHHHHCTTSEEEE--EETTEEEEEETTTTEE
T ss_pred Cceeecc-----CCCccEEEEEECCCC-ceeECCccccccccccHHHHHHHHhhCCCCeEEE--eeCCceEEEECCccEE
Confidence 4788864 356799999999999 999999965 899999999977 78999 8999999999999999
Q ss_pred eecCCCCEeeeeecCCCCCCc
Q psy13658 142 VRNTTGNVRNIRRTQQAPYPL 162 (228)
Q Consensus 142 ~N~~tg~~R~VRR~~~~~yP~ 162 (228)
+|.+||+.|+|||++.+..|.
T Consensus 80 ~N~~tgt~R~VrRrp~~~~~~ 100 (102)
T 2dk6_A 80 MNLTTGKQRLIKRAPFSSGPS 100 (102)
T ss_dssp EESSSCCEEEEEEEESCCSSC
T ss_pred ecCccCcccCeEeccccCCCC
Confidence 999999999999999887764
No 3
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=129.85 Aligned_cols=72 Identities=28% Similarity=0.559 Sum_probs=65.8
Q ss_pred CceeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecC-CCCEeeeeecCCCCCC
Q psy13658 85 KGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNT-TGNVRNIRRTQQAPYP 161 (228)
Q Consensus 85 ~~~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~-tg~~R~VRR~~~~~yP 161 (228)
.++.|+|+++.| |++|++.+|..||+||+++.++++| ++.|++|+|||.+|+|.|.. ++..|+|||.. ..+|
T Consensus 3 ~~~~W~w~~~~G--W~~Yd~~~s~~IE~af~~~~~~~~l--~i~G~~Y~IdF~~m~Q~~~~~~~~~R~IrR~~-~~~~ 75 (85)
T 3v3l_A 3 GEYAWYYEGRNG--WWQYDERTSRELEDAFSKGKKNTEM--LIAGFLYVADLENMVQYRRNEHGRRRKIKRDI-IDIP 75 (85)
T ss_dssp CCEEEEEECSSS--EEECCHHHHHHHHHHHHTTCSEEEE--EETTEEEEEETTTTEEEESSSCCCCEEEEEEE-SSSC
T ss_pred CceEEEEeCCCC--ceeCCHHHHHHHHHHHHhCCCcEEE--EeCCcEEEEEchhceeecccCCCceeceeecC-CCCC
Confidence 478999999975 9999999999999999999999999 99999999999999999987 99999999954 3334
No 4
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=99.76 E-value=4.2e-19 Score=137.81 Aligned_cols=72 Identities=28% Similarity=0.542 Sum_probs=67.1
Q ss_pred CCCCCceeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeec-CCCCEeeeeecC
Q psy13658 81 SPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRN-TTGNVRNIRRTQ 156 (228)
Q Consensus 81 S~~~~~~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~-~tg~~R~VRR~~ 156 (228)
|+++.++.|+|+++.| |.+|++.+|..||+||+++.++++| +++|+.|+|||++|+|+|. ++++.|+|||..
T Consensus 24 sa~~~~~~W~w~gd~G--W~~Yd~~~s~~IE~Ay~~g~~~~~l--~i~G~~Y~IDF~~m~Q~r~~~~~~~R~IkR~~ 96 (110)
T 1ujr_A 24 SRGNGEYAWYYEGRNG--WWQYDERTSRELEDAFSKGKKNTEM--LIAGFLYVADLENMVQYRRNEHGRRRKIKRDI 96 (110)
T ss_dssp HHHHHEEEEEEECSSS--EEECCSHHHHHHHHHHHHTCSEEEE--EETTEEEEEETTTTEEEESSCSSCEEEEEEEE
T ss_pred cCCCCCeEEEEeCCCC--CccCCHHHHHHHHHHHHcCCCceEE--EeCCcEEEEEhhHceeeccCCCCcccCeEEEc
Confidence 4567799999999986 9999999999999999999999999 9999999999999999998 599999999943
No 5
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=124.04 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=62.1
Q ss_pred ccEEEEEEEeCCCceEeCChHH-------HHHHHHhhcCC-CCeEEeccCCCCCcceEEECCCceEeecCCCceEecccC
Q psy13658 4 HAVVVWEWLNRNRRWRPFTPEV-------TQLIERAHSKN-LTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRS 75 (228)
Q Consensus 4 ~~~vvWEw~~d~g~W~pY~~~v-------~~~IE~ay~~~-~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR~ 75 (228)
..+++|||+|+.|.|.+|+..+ |..||++|+.+ .+.+.|... +..|+|||..|+|+|.+||+.|+|||.
T Consensus 17 tt~w~W~W~de~G~W~~Y~~~~~~~~sv~S~~IE~ay~~~~~~~v~f~a~---~~~Y~IdF~~M~Q~N~~tgt~R~VrRr 93 (102)
T 2dk6_A 17 DTQWGWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKTNPCGSISFTTS---KFSYKIDFAEMKQMNLTTGKQRLIKRA 93 (102)
T ss_dssp CCCEEEEECCSSSCCEECCCBSSTTCBCCHHHHHHHHHHCTTSEEEEEET---TEEEEEETTTTEEEESSSCCEEEEEEE
T ss_pred CccEEEEEECCCCceeECCccccccccccHHHHHHHHhhCCCCeEEEeeC---CceEEEECCccEEecCccCcccCeEec
Confidence 3589999999889999999854 89999999986 478888753 579999999999999999999999997
Q ss_pred C
Q psy13658 76 F 76 (228)
Q Consensus 76 ~ 76 (228)
+
T Consensus 94 p 94 (102)
T 2dk6_A 94 P 94 (102)
T ss_dssp E
T ss_pred c
Confidence 6
No 6
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=115.09 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=62.5
Q ss_pred ccEEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecC-CCceEecccCCC
Q psy13658 4 HAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEI-DGAITNVRRSFY 77 (228)
Q Consensus 4 ~~~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~-Tg~~R~VRR~~~ 77 (228)
..+++|+|++++| |.+|++.+|..||++|+++..++.|..+ +..|+|||.+|+|.|.+ ++..|+|||...
T Consensus 2 ~~~~~W~w~~~~G-W~~Yd~~~s~~IE~af~~~~~~~~l~i~---G~~Y~IdF~~m~Q~~~~~~~~~R~IrR~~~ 72 (85)
T 3v3l_A 2 NGEYAWYYEGRNG-WWQYDERTSRELEDAFSKGKKNTEMLIA---GFLYVADLENMVQYRRNEHGRRRKIKRDII 72 (85)
T ss_dssp -CCEEEEEECSSS-EEECCHHHHHHHHHHHHTTCSEEEEEET---TEEEEEETTTTEEEESSSCCCCEEEEEEES
T ss_pred CCceEEEEeCCCC-ceeCCHHHHHHHHHHHHhCCCcEEEEeC---CcEEEEEchhceeecccCCCceeceeecCC
Confidence 4678999999876 9999999999999999999999998765 46999999999999987 899999999653
No 7
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=99.60 E-value=1.2e-15 Score=132.47 Aligned_cols=71 Identities=30% Similarity=0.541 Sum_probs=62.8
Q ss_pred EEEEEEEe---C-CCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCceEecccCCC
Q psy13658 6 VVVWEWLN---R-NRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSFY 77 (228)
Q Consensus 6 ~vvWEw~~---d-~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR~~~ 77 (228)
+++|||++ | .|.|++|+..+|..||++|+++...|.|..... +..|+|||.+|+|+|.+||+.|+|||...
T Consensus 109 g~vWeW~d~~~D~~G~W~~Y~~~vs~~IE~Ay~~g~~~v~L~~t~~-G~~Y~IDF~~MtQ~N~~Tgt~R~VRRr~~ 183 (240)
T 2a90_A 109 GTKWEWSGGSADSNNDWRPYNMHVQSIIEDAWARGEQTLDLSNTHI-GLPYTINFSNLTQLRQPSGPMRSIRRTQQ 183 (240)
T ss_dssp TEEEEEECSSSSCCSSEEECCHHHHHHHHHHHHTTCSEEEHHHHTS-SCCEEEETTTTEEEETTTCCEEEEEEEEC
T ss_pred ccEEEEeCCCCCCCCceEECCHHHHHHHHHHHhcCCCcceeeecCC-CceEEEECCCcEEEecCCCcEEeeEecCC
Confidence 68999998 6 489999999999999999999999999973222 36899999999999999999999999764
No 8
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=99.58 E-value=3.9e-15 Score=115.47 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=62.2
Q ss_pred cEEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeec-CCCceEecccCCC
Q psy13658 5 AVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSE-IDGAITNVRRSFY 77 (228)
Q Consensus 5 ~~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~-~Tg~~R~VRR~~~ 77 (228)
.+++|+|++++| |.+|++.+|..||+||+++..++.|..+ +..|+|||.+|+|.|. +++..|+|||-..
T Consensus 28 ~~~~W~w~gd~G-W~~Yd~~~s~~IE~Ay~~g~~~~~l~i~---G~~Y~IDF~~m~Q~r~~~~~~~R~IkR~~~ 97 (110)
T 1ujr_A 28 GEYAWYYEGRNG-WWQYDERTSRELEDAFSKGKKNTEMLIA---GFLYVADLENMVQYRRNEHGRRRKIKRDII 97 (110)
T ss_dssp HEEEEEEECSSS-EEECCSHHHHHHHHHHHHTCSEEEEEET---TEEEEEETTTTEEEESSCSSCEEEEEEEEE
T ss_pred CCeEEEEeCCCC-CccCCHHHHHHHHHHHHcCCCceEEEeC---CcEEEEEhhHceeeccCCCCcccCeEEEcc
Confidence 478999999876 9999999999999999999999999765 4799999999999998 4999999999653
No 9
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.67 E-value=9.6e-08 Score=72.38 Aligned_cols=71 Identities=13% Similarity=0.268 Sum_probs=63.9
Q ss_pred ceeEEEEeCCCCCeEECChhhhHHHHHHHhhCCCcEEeeccCCCCcEEEEcCCceEeecCCCCEeeeeecCCCCCC
Q psy13658 86 GARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYP 161 (228)
Q Consensus 86 ~~~WeW~~d~g~~W~~Y~~~~s~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~M~Q~N~~tg~~R~VRR~~~~~yP 161 (228)
-+.|+|.+ .+ .|.+||..++-.||+||..+..++.+ .+.+..|++||.++..++ ..|..-.|+|.....=|
T Consensus 26 lVeWqY~d-~~-~~~~FDk~TNl~LEeA~~~kk~~v~V--kI~~~~y~Vdl~t~~A~~-~~G~~~~v~R~~K~~~~ 96 (99)
T 1x4r_A 26 YVEWQYID-KN-ITQCFDKMTNMKLEVAWKAKKKDTVV--QIHNQDFTVDLSTNTATA-PQGQTFTVQRLVKASGP 96 (99)
T ss_dssp SCEEEEEC-SS-CEEECCTTHHHHHHHHHHTTCSEEEE--EETTEEEEEETTTTEEEC-TTSCEEEEEEECCCCCC
T ss_pred hhEEEEeC-CC-eEeechHHHHHHHHHHHHccCCceEE--EECCEEEEEEcCcceeec-CCCCEEEEEEeccccCC
Confidence 47999987 55 79999999999999999999999988 788899999999999999 89999999998776555
No 10
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.26 E-value=2.2e-06 Score=64.94 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=56.2
Q ss_pred EEEEEEEeCCCceEeCChHHHHHHHHhhcCCCCeEEeccCCCCCcceEEECCCceEeecCCCceEecccCC
Q psy13658 6 VVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAITNVRRSF 76 (228)
Q Consensus 6 ~vvWEw~~d~g~W~pY~~~v~~~IE~ay~~~~~sv~l~~~~~~~~~y~IDf~sMtQ~n~~Tg~~R~VRR~~ 76 (228)
.|.|+|.+ +|.|.+|+.-.+..||+||..+..++.+... ...|.|||.++...+ ..|..-.|+|..
T Consensus 26 lVeWqY~d-~~~~~~FDk~TNl~LEeA~~~kk~~v~VkI~---~~~y~Vdl~t~~A~~-~~G~~~~v~R~~ 91 (99)
T 1x4r_A 26 YVEWQYID-KNITQCFDKMTNMKLEVAWKAKKKDTVVQIH---NQDFTVDLSTNTATA-PQGQTFTVQRLV 91 (99)
T ss_dssp SCEEEEEC-SSCEEECCTTHHHHHHHHHHTTCSEEEEEET---TEEEEEETTTTEEEC-TTSCEEEEEEEC
T ss_pred hhEEEEeC-CCeEeechHHHHHHHHHHHHccCCceEEEEC---CEEEEEEcCcceeec-CCCCEEEEEEec
Confidence 58999986 8889999999999999999877666666543 348999999999998 778889999964
No 11
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=36.16 E-value=42 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCcEEeeccCCCCcEEEEcCC
Q psy13658 108 CLIEYSWAKGDQTIDISKTHLGFPYILNFCN 138 (228)
Q Consensus 108 ~~IE~ay~~g~~~v~l~~~~~g~~Y~IDF~~ 138 (228)
+.|..||.+|.+...|+ ..++..|.+.|.-
T Consensus 27 ~SiqTafNQGaGt~sLs-~SG~isf~VeFmL 56 (73)
T 1p65_A 27 SSIQTAFNQGAGTCTLS-DSGRISYTVEFSL 56 (73)
T ss_dssp HHHHHHHHHTCSEEEEC-TTSCEEEEEEECC
T ss_pred HHHHHHHhCCCceEEec-cCCceeEEEEEec
Confidence 46889999999999994 3444689999953
Done!