RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13658
(228 letters)
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A
{Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Length = 240
Score = 170 bits (431), Expect = 3e-53
Identities = 94/210 (44%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 2 SNHAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
HAV VWE+ +R + W P++P V+Q +ERAH+K LT V+LSDADP+L+ Y++N+ T+ Q
Sbjct: 21 HAHAVSVWEFESRGK-WLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQ 79
Query: 62 CSEIDGAIT-----NVRRSFYPPDSPAGKGARWEWEGDVH---GEWHAYDMQAQCLIEYS 113
SE + A + VRR FY P SPAGKG +WEW G +W Y+M Q +IE +
Sbjct: 80 ESEAETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYNMHVQSIIEDA 139
Query: 114 WAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQMAEI 173
WA+G+QT+D+S TH+G PY +NF NLTQ+R +G +R+IRRTQQAPYPL+KL+ Q ++
Sbjct: 140 WARGEQTLDLSNTHIGLPYTINFSNLTQLRQPSGPMRSIRRTQQAPYPLVKLTPQQANQL 199
Query: 174 QGQMSASQGAVTMTTPGKKCKHTTSSNITR 203
+ ++ K +TR
Sbjct: 200 KSNSASVSSQYNTLPKLGDTKSLHRVPMTR 229
Score = 45.8 bits (107), Expect = 3e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 75 SFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLG-FPYI 133
S PP + A + WE+E G+W Y +E + AK + +S Y
Sbjct: 14 SGGPPVNHAHAVSVWEFES--RGKWLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYY 71
Query: 134 LNFCNLTQVRNTTGNVRNIRRTQQ 157
+N +TQ +
Sbjct: 72 VNVRTMTQESEAETAGSGLLTIGV 95
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Length = 110
Score = 68.9 bits (168), Expect = 2e-15
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 70 TNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLG 129
T + S W +EG W YD + +E +++KG + ++ G
Sbjct: 13 TLLSPEELKAASRGNGEYAWYYEGR--NGWWQYDERTSRELEDAFSKGKKNTEMLI--AG 68
Query: 130 FPYILNFCNLTQVR-NTTGNVRNIRRT 155
F Y+ + N+ Q R N G R I+R
Sbjct: 69 FLYVADLENMVQYRRNEHGRRRKIKRD 95
Score = 38.5 bits (89), Expect = 2e-04
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 2 SNHAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
+ W + RN W + ++ +E A SK + + A Y +L + Q
Sbjct: 25 RGNGEYAWYYEGRNG-WWQYDERTSRELEDAFSKGKKNTEMLIAG---FLYVADLENMVQ 80
Query: 62 -CSEIDGAITNVRRSFYPPD 80
G ++R
Sbjct: 81 YRRNEHGRRRKIKRDIIDIP 100
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Length = 85
Score = 56.0 bits (135), Expect = 7e-11
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 85 KGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVR- 143
W +EG W YD + +E +++KG + ++ GF Y+ + N+ Q R
Sbjct: 3 GEYAWYYEGR--NGWWQYDERTSRELEDAFSKGKKNTEMLI--AGFLYVADLENMVQYRR 58
Query: 144 NTTGNVRNIRR 154
N G R I+R
Sbjct: 59 NEHGRRRKIKR 69
Score = 34.8 bits (80), Expect = 0.003
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 9 WEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEID-G 67
W + RN W + ++ +E A SK + + A Y +L + Q + G
Sbjct: 7 WYYEGRNG-WWQYDERTSRELEDAFSKGKKNTEMLIAG---FLYVADLENMVQYRRNEHG 62
Query: 68 AITNVRRSFY 77
++R
Sbjct: 63 RRRKIKRDII 72
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 102
Score = 49.7 bits (118), Expect = 2e-08
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 87 ARWEWEGDVHGEWHAYDMQAQ-------CLIEYSWAKGDQTIDISKTHLGFPYILNFCNL 139
W + + G+WH + IE S+ IS T F Y ++F +
Sbjct: 20 WGWFYLAE-CGKWHMFQPDTNSQCSVSSEDIEKSFKTNPCGS-ISFTTSKFSYKIDFAEM 77
Query: 140 TQVRNTTGNVRNIRR 154
Q+ TTG R I+R
Sbjct: 78 KQMNLTTGKQRLIKR 92
Score = 39.6 bits (92), Expect = 1e-04
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 8 VWEWLNRNRRWRPFTPEVT-------QLIERAHSKNLTSVILSDADPNLQNYFINLHTLQ 60
W +L +W F P+ + IE++ N I +Y I+ ++
Sbjct: 21 GWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKTNPCGSISFTTSK--FSYKIDFAEMK 78
Query: 61 QCSEIDGAITNVRRSFYPPDSPAG 84
Q + G ++R+ + +G
Sbjct: 79 QMNLTTGKQRLIKRAPFSSGPSSG 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.012
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 60 QQCSEIDGAITNVRRSFYPPDS-PA 83
Q ++ ++ Y DS PA
Sbjct: 20 QALKKLQASL-----KLYADDSAPA 39
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 31.3 bits (71), Expect = 0.18
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 8 VWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINL 56
+++ + W+ + ++ L ++S+ D L+ L
Sbjct: 95 LYKDFSHPCTWQVL-DGAEDTLRECRTRGLRLAVISNFDRRLEGILGGL 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.27
Identities = 41/260 (15%), Positives = 76/260 (29%), Gaps = 94/260 (36%)
Query: 21 FTPEVTQLIER-----AHSKNL-TSVILSDAD------PNLQNY-----FINLHTLQQCS 63
FTP +L HS+ L T+V +++ D +++ FI + +
Sbjct: 258 FTPG--ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-YEA- 313
Query: 64 EIDGAITNVRRSFYPPDSPAGKGARWEWEGDVHGEWHAYDM---------QAQCLIEY-- 112
YP S E + E M Q Q +
Sbjct: 314 -------------YPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 113 SWAKGDQTIDIS----KTHL---GFP---YILNFCNLTQVRNTTG-NVRNIRRTQQ---- 157
S + ++IS +L G P Y LN L + + +G + I +++
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 158 --------APY--PLIKLSTNQMAEIQGQMSASQGAVTMTTPGKKCK----HTT------ 197
+P+ L + ++ ++ K + T
Sbjct: 417 SNRFLPVASPFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 198 --SSNITRTL-RNIFHGPVH 214
S +I+ + I PV
Sbjct: 470 VLSGSISERIVDCIIRLPVK 489
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 30.5 bits (69), Expect = 0.30
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 8 VWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINL 56
+ E R+ + + + +E S ++S+A P ++
Sbjct: 84 LKEADIRDGEAFLY-DDTLEFLEGLKSNGYKLALVSNASPRVKTLLEKF 131
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus}
Length = 99
Score = 28.1 bits (62), Expect = 0.92
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 90 EWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRNTTGNV 149
EW+ +D +E +W + + + F L+ G
Sbjct: 28 EWQYIDKNITQCFDKMTNMKLEVAWKAKKKDTVVQIHNQDFTVDLSTN---TATAPQGQT 84
Query: 150 RNIRR 154
++R
Sbjct: 85 FTVQR 89
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR
genomics, protein structure initiative; 1.95A
{Staphylococcus haemolyticus}
Length = 305
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 20 PFTPEVTQLIER-AHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAI 69
PF +V I + + + S ++ ++ + Y +Q +DG I
Sbjct: 40 PFNSDVLNGINQACNVRGY-STRMTVSENSGDLYHEVKTMIQS-KSVDGFI 88
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 27.4 bits (61), Expect = 2.4
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 10 EWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
++ L+ A + +VILS+ L I
Sbjct: 8 DYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNG 59
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 27.5 bits (61), Expect = 2.7
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 14/57 (24%)
Query: 10 EWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADP-------------NLQNYF 53
L+ + +E+ ILS+ + +YF
Sbjct: 25 HPLDTYPEVVLR-KNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80
>1qpz_A PURA, protein (purine nucleotide synthesis repressor);
transcription regulation, DNA-binding, purine
biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli}
SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A*
1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A*
1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A*
2pud_A* 1jfs_A* 1jh9_A* ...
Length = 340
Score = 27.5 bits (62), Expect = 4.3
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 20 PFTPEVTQLIER-AHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGAI 69
+ E+ + +E+ K ++IL +A NL+ L + Q +DG +
Sbjct: 71 AYFAEIIEAVEKNCFQKGY-TLILGNAWNNLEKQRAYLSMMAQ-KRVDGLL 119
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 26.8 bits (60), Expect = 5.9
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 201 ITRTLRNIFHGPVHPMSPVYEDIW--RAY 227
+ + L+ G V+P++ E++ +AY
Sbjct: 27 VFKNLKEYKKGKVYPVNIKEEEVQGVKAY 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 27.1 bits (59), Expect = 6.4
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 122 DISKTHLGFP-YILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQ 169
D++ TH G +I N N ++R R +R + P+ N+
Sbjct: 613 DMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANK 661
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein
structure initiative, PSI, BACI halodurans protein
BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP:
d.129.3.5
Length = 146
Score = 25.9 bits (57), Expect = 6.8
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 68 AITN---VRRSFYPPDSPAGKGARWEWEGDVHGEWHAY-DMQAQCLIEYSWAKGDQTIDI 123
A++ + F D A G + + D++ + ++W ++
Sbjct: 23 AVSTSEGLAFWFMENDLKAETGHHFHLQSPFGPSPCQVTDVERPIKLSFTWDTDGWSVTF 82
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 26.5 bits (59), Expect = 7.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 122 DISKTHLGFPYIL--NFCNLTQVRNTTGNVRNIRRTQQAPYPL 162
D+ G P N +++R + +R IR+ QQ Y +
Sbjct: 163 DLVFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKI 205
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 26.7 bits (60), Expect = 8.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 42 LSDADPNLQN 51
LS +DPNLQN
Sbjct: 574 LSSSDPNLQN 583
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 26.6 bits (58), Expect = 8.5
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 122 DISKTHLGFPYILNFC-----NLTQVRNTTGNVRNIRRTQQAPYPL 162
+I KT G P +L N ++ R I++ Q PY L
Sbjct: 377 NILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCL 422
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 26.7 bits (58), Expect = 8.9
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 122 DISKTHLGFP-YILNFCNLTQVRNTTGNVRNIRRTQQAPYPLIKLSTNQ 169
D++ TH G +I N N ++R R +R + P+ N+
Sbjct: 918 DMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANK 966
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 26.2 bits (58), Expect = 9.2
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 11 WLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQN 51
+ R P +++ R I++D +P Q
Sbjct: 86 HNTKFAYLREV-PGARKVLIRLKELGYELGIITDGNPVKQW 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.425
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,554,763
Number of extensions: 193367
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 31
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)