RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13658
         (228 letters)



>d2a90a1 d.289.1.1 (A:43-131) Deltex (Dx) {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 89

 Score = 98.1 bits (244), Expect = 2e-27
 Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 6/89 (6%)

Query: 4  HAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCS 63
          HAV VWE+ +R + W P++P V+Q +ERAH+K LT V+LSDADP+L+ Y++N+ T+ Q S
Sbjct: 2  HAVSVWEFESRGK-WLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQES 60

Query: 64 EIDGAIT-----NVRRSFYPPDSPAGKGA 87
          E + A +      VRR FY P SPAGKG 
Sbjct: 61 EAETAGSGLLTIGVRRMFYAPSSPAGKGT 89



 Score = 69.2 bits (169), Expect = 3e-16
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 89  WEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTH-LGFPYILNFCNLTQVRNTTG 147
           WE+E    G+W  Y       +E + AK    + +S        Y +N   +TQ      
Sbjct: 7   WEFESR--GKWLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQESEAET 64

Query: 148 N-----VRNIRRTQQAP 159
                    +RR   AP
Sbjct: 65  AGSGLLTIGVRRMFYAP 81


>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 80

 Score = 92.4 bits (229), Expect = 4e-25
 Identities = 44/80 (55%), Positives = 61/80 (76%), Gaps = 3/80 (3%)

Query: 88  RWEWEG---DVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFCNLTQVRN 144
           +WEW G   D + +W  Y+M  Q +IE +WA+G+QT+D+S TH+G PY +NF NLTQ+R 
Sbjct: 1   KWEWSGGSADSNNDWRPYNMHVQSIIEDAWARGEQTLDLSNTHIGLPYTINFSNLTQLRQ 60

Query: 145 TTGNVRNIRRTQQAPYPLIK 164
            +G +R+IRRTQQAPYPL+K
Sbjct: 61  PSGPMRSIRRTQQAPYPLVK 80



 Score = 60.4 bits (146), Expect = 5e-13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 9  WEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQCSEIDGA 68
              + N  WRP+   V  +IE A ++   ++ LS+    L  Y IN   L Q  +  G 
Sbjct: 6  GGSADSNNDWRPYNMHVQSIIEDAWARGEQTLDLSNTHIGL-PYTINFSNLTQLRQPSGP 64

Query: 69 ITNVRRSFYPP 79
          + ++RR+   P
Sbjct: 65 MRSIRRTQQAP 75


>d1ujra_ d.289.1.1 (A:) RING finger protein 146 (Dactylidin) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 110

 Score = 62.3 bits (151), Expect = 2e-13
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 78  PPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNFC 137
              S       W +EG     W  YD +    +E +++KG +  ++     GF Y+ +  
Sbjct: 21  KAASRGNGEYAWYYEGR--NGWWQYDERTSRELEDAFSKGKKNTEM--LIAGFLYVADLE 76

Query: 138 NLTQVR-NTTGNVRNIRR 154
           N+ Q R N  G  R I+R
Sbjct: 77  NMVQYRRNEHGRRRKIKR 94



 Score = 44.6 bits (105), Expect = 6e-07
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 2   SNHAVVVWEWLNRNRRWRPFTPEVTQLIERAHSKNLTSVILSDADPNLQNYFINLHTLQQ 61
             +    W +  RN  W  +    ++ +E A SK   +  +         Y  +L  + Q
Sbjct: 25  RGNGEYAWYYEGRNG-WWQYDERTSRELEDAFSKGKKNTEM---LIAGFLYVADLENMVQ 80

Query: 62  CSEID-GAITNVRRSFYPPD 80
               + G    ++R      
Sbjct: 81  YRRNEHGRRRKIKRDIIDIP 100


>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and
           C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
          Length = 103

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 210 HGPVHPMSPVYEDIWR 225
              ++P+  V  D+W 
Sbjct: 41  KSDMYPLYSVGSDVWL 56


>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 303

 Score = 25.4 bits (55), Expect = 6.9
 Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 30/162 (18%)

Query: 77  YPPDSPAGKGARWEWEGDVHGEWHAYDMQAQCLIEYSWAKGDQTIDISKTHLGFPYILNF 136
              D    +G    W   VH  W    + A   +  +  +G          L  P     
Sbjct: 63  IILDKELEEGDWSGWSVSVHSPWGNEKVSAARTVLENGLRGG---------LPEPSRPAA 113

Query: 137 CNLTQVRNTTGNVRNIRR-------------------TQQAPYPLIKLSTNQMAEIQGQM 177
            +  ++   +GN + I R                         P+    T+ M      M
Sbjct: 114 VSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYM 173

Query: 178 SASQGAVTMTTPGKKCKHTTSSNITRTLR-NIFHGPVHPMSP 218
           +   G + MT P          +   T   +++  PV P  P
Sbjct: 174 AIIGG-IPMTVPVVDAVPVPDRSRPGTNIKDVYSAPVSPNLP 214


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 894,132
Number of extensions: 37900
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 14
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)