BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13659
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFY5|COX10_MOUSE Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus
GN=Cox10 PE=2 SV=1
Length = 443
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 185/241 (76%), Gaps = 3/241 (1%)
Query: 2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
AG+A+AP PF+WS FL+ SLGTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 174 AGFALAPGPFDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 233
Query: 62 HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
A+ FA + G A+L +GVN LT ALG+FN+ LYT YTP+KR+SI NTWVG+VVGAI
Sbjct: 234 LAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAI 293
Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
PP+MGW A TGSL GA LL IL++WQFPHFNALSW LR DYSR GY MM+VT+P
Sbjct: 294 PPVMGWTAATGSL---DAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 350
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
LCR +LR+ +AL+ +S A P+LD+T F + S+P+N Y +YL ++FY ++D SSRKL
Sbjct: 351 LCRRVALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYLGFRFYVDADRRSSRKL 410
Query: 242 F 242
F
Sbjct: 411 F 411
>sp|Q12887|COX10_HUMAN Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens
GN=COX10 PE=1 SV=3
Length = 443
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/241 (62%), Positives = 188/241 (78%), Gaps = 3/241 (1%)
Query: 2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
AG+A+AP PF+W FL+ S+GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 175 AGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234
Query: 62 HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
A+ FA + G A+L GVN LT ALGLFN+ LYT YTP+KRISIANTWVG+VVGAI
Sbjct: 235 LAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAI 294
Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
PP+MGW A TGSL GAFLL IL++WQFPHFNALSW LR DYSR GY MM+VT+P
Sbjct: 295 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPG 351
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
LCR +LR+ +ALLV+SAA P+LD+T F + ++P+NAY +YL ++FY ++D SSR+L
Sbjct: 352 LCRRVALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRL 411
Query: 242 F 242
F
Sbjct: 412 F 412
>sp|Q5R460|COX10_PONAB Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii
GN=COX10 PE=2 SV=1
Length = 443
Score = 300 bits (768), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 150/241 (62%), Positives = 187/241 (77%), Gaps = 3/241 (1%)
Query: 2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
AG+A+AP PF+W FL+ S+GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 175 AGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234
Query: 62 HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
A+ FA + G A+L GVN LT ALGLFN+ LYT YTP+KRISIANTWVG+VVGAI
Sbjct: 235 LAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAI 294
Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
PP+MGW A TGSL GAFLL IL++WQFPHFNALSW LR YSR GY MM+VT+P
Sbjct: 295 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREGYSRGGYCMMSVTHPG 351
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
LCR +LR+ +ALLV+SAA P+LD+T F + ++P+NAY +YL ++FY ++D SSR+L
Sbjct: 352 LCRRVALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRL 411
Query: 242 F 242
F
Sbjct: 412 F 412
>sp|Q6C0L2|COX10_YARLI Protoheme IX farnesyltransferase, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=COX10 PE=3 SV=1
Length = 471
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 170/275 (61%), Gaps = 16/275 (5%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
M+ YA+ P ++ L ++GT L S +ANA+N E +DS M+RT+ R +VRG ++P
Sbjct: 179 MSSYALTPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYDSMMTRTRGRPVVRGAVTP 238
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
A FA + GTA LYFGVN A LG N+ LY +YT +KR I NTWVG+VVGA
Sbjct: 239 NQAFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYTTLKRKHIINTWVGAVVGA 298
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA GSLL GA+ L+ +L+ WQFPHFNALS+++R +Y +AGY M A NP
Sbjct: 299 IPPLMGWAASGGSLLH--PGAWCLAGLLYAWQFPHFNALSYSIRDEYKKAGYVMTAWKNP 356
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE-------- 232
L LRY + + + +VT+ WF L+S LNA+ + A+KF+++
Sbjct: 357 GLNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAFKFWQQENVNIALA 416
Query: 233 ------SDSSSSRKLFRFSLLHLPALMILLLINKK 261
S + +RKLF S++HLP +++L +I+KK
Sbjct: 417 AAGKQYSQNPFARKLFWGSVVHLPGVLLLAMIHKK 451
>sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=COX10 PE=3 SV=1
Length = 507
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 169/288 (58%), Gaps = 27/288 (9%)
Query: 1 MAGYAMAPAPFEWS------------SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRT 48
MA YA+ P P S + L ++GT S++ANA+N +E D++M+RT
Sbjct: 175 MATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGTTFCSASANALNMLYEPSTDAKMTRT 234
Query: 49 KNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS 108
+NR LVR ++S A+ FA+ S GT LYFGVN + LG N+V+Y +YTP+K ++
Sbjct: 235 RNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVNPTVSGLGFANIVIYAGMYTPLKAVT 294
Query: 109 IANTWVGSVVGAIPPLMGWAACTGSLL-------------DGSG-GAFLLSAILFTWQFP 154
NTW+G+VVG IPPLMGWAA G DGS G ++++ +LF WQFP
Sbjct: 295 AFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRELLFASDGSSIGGWVMAGLLFAWQFP 354
Query: 155 HFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALE 214
HF ALSW +R +Y +AG RM+A TNP +LRY+ + + + VT FA+
Sbjct: 355 HFMALSWPIREEYKKAGLRMLAWTNPARNGRVALRYSFVFIPLCLSLCAAGVTEWSFAVT 414
Query: 215 SIPLNAYFTYLAYKFYK-ESDSSSSRKLFRFSLLHLPALMILLLINKK 261
S P+NA+ + +F++ E + S+R LF S+ HLP +MIL L++KK
Sbjct: 415 SFPINAWLIRESVRFWRYEGNKGSARGLFWASVWHLPGVMILALLHKK 462
>sp|Q9Y7Y4|COX10_SCHPO Protoheme IX farnesyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox10 PE=3 SV=1
Length = 387
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 152/243 (62%), Gaps = 2/243 (0%)
Query: 1 MAGYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
M+ YA+AP P +++ ++GT L S +ANA NQ E D QM+RT++R + RG +
Sbjct: 104 MSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIR 163
Query: 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVG 119
P +A FA + AGT+M + VN LGL N+VLY +YTP+KRISI NTWVGS+VG
Sbjct: 164 PEYAWLFATLTGIAGTSMSFL-VNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVG 222
Query: 120 AIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN 179
AIPPLMGWAAC+G L G + +A+LF WQFPHFNA S ++ DY + GY+MMA N
Sbjct: 223 AIPPLMGWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTMVKDDYKKCGYQMMAWKN 282
Query: 180 PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239
P L SLRY +A L +S A + W+A+ + N + A+KFY+ + ++R
Sbjct: 283 PALNARVSLRYALAFLPLSYAYISTGLVGPWYAVPATGTNMFLIARAWKFYRNRNYQNAR 342
Query: 240 KLF 242
LF
Sbjct: 343 SLF 345
>sp|Q6BKW6|COX10_DEBHA Protoheme IX farnesyltransferase, mitochondrial OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=COX10 PE=3 SV=2
Length = 462
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 162/277 (58%), Gaps = 19/277 (6%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ YA++P L ++GT L S AANA+N E FD +M RT R +VRG++SP
Sbjct: 161 ICSYAISPYTVSLPELLFLTMGTALCSGAANAINMGREPEFDKKMPRTVGRPVVRGLISP 220
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
A FA + + G ML+ GVN + LG N+VLY+ +YT +KR SI NTWVG++VGA
Sbjct: 221 KQAYQFAGITGSLGCTMLFLGVNPTVSFLGFLNIVLYSWIYTSLKRKSIINTWVGAIVGA 280
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA S LD GA+ L+ +L+ WQFPHFNALS N+ Y AGY M A NP
Sbjct: 281 IPPLMGWAA--SSPLDHP-GAWCLAGLLYAWQFPHFNALSHNIADQYKGAGYVMTAAENP 337
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSS---- 236
L +LRY++ + + +T+ F +S N++ TYLAYKF+ + +
Sbjct: 338 KLNARVALRYSLLMFPLCFGLSYFGITDWVFQFDSAIANSWLTYLAYKFWMQIKQNYTGQ 397
Query: 237 ------------SSRKLFRFSLLHLPALMILLLINKK 261
++KLF S+ HLPA++IL +++KK
Sbjct: 398 KPTANGIAMANIHAKKLFWGSVWHLPAVLILAMLHKK 434
>sp|Q7S5E7|COX10_NEUCR Protoheme IX farnesyltransferase, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=cox-10 PE=3 SV=1
Length = 535
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 162/291 (55%), Gaps = 30/291 (10%)
Query: 1 MAGYAMAPAP-FEWSSFLICSLGTGL--------------VSSAANAVNQYHEVPFDSQM 45
M YA+ P P F SS L SL L S++ANA+N +E DS+M
Sbjct: 201 MVPYALYPVPSFLTSSALDTSLAPSLSPLTLLFLTTGTTLCSASANALNMLYEPDTDSKM 260
Query: 46 SRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMK 105
+RT+ R LVR +L+ A+ FA+ AGT LYFGVN + LG N+ LY YTP+K
Sbjct: 261 TRTRTRPLVRRLLTTKAAVLFAVGCGLAGTLALYFGVNPTVSFLGAANIALYAGAYTPLK 320
Query: 106 RISIANTWVGSVVGAIPPLMGWAACTGSLLDGSG--------------GAFLLSAILFTW 151
RIS NTWVG++VG IPPLMGWAA G G G G +L + +LF W
Sbjct: 321 RISAVNTWVGAIVGGIPPLMGWAAAAGESATGDGTWRELLFASDGSSLGGWLFAGLLFAW 380
Query: 152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWF 211
QFPHF LSW +R +Y AG RM+A TNP +LRY++A + + VT F
Sbjct: 381 QFPHFMPLSWGIRHEYKAAGLRMLAWTNPARNGRVALRYSLAFIPLCVGLSATGVTEWSF 440
Query: 212 ALESIPLNAYFTYLAYKFYK-ESDSSSSRKLFRFSLLHLPALMILLLINKK 261
A+ S+P+NA+ + A KF++ E S+R LF S+ HLP +M+L L KK
Sbjct: 441 AVTSLPVNAWLVWEAIKFWRLEGHKGSARGLFWASVWHLPVIMVLALAQKK 491
>sp|Q6CTW6|COX10_KLULA Protoheme IX farnesyltransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX10 PE=3 SV=1
Length = 452
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 165/282 (58%), Gaps = 24/282 (8%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ YA++P P L ++GT L S++ANA+N E FD QM RT+ R +VRG++SP
Sbjct: 159 ICSYALSPYPATVLQLLSLTVGTTLCSASANAINMGREPDFDRQMIRTQARPVVRGIVSP 218
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
A FA A+ GT++L+ GVN A LG N+ LY +YT +KR I NTWVG++VGA
Sbjct: 219 NQAFKFATAAGTLGTSILWLGVNPTVAFLGFSNIALYAWLYTSLKRKHIINTWVGALVGA 278
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA + GA+ L+ +L+ WQFPHFN LS N+R +Y AGY M A NP
Sbjct: 279 IPPLMGWAASSPL---SHPGAWCLAGLLYAWQFPHFNTLSHNIRNEYKNAGYVMTAWKNP 335
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
L +LRY++ + + +VT+ ++ L+S +NA+ + A+KFY + + S
Sbjct: 336 KLNARVALRYSLLMFPLCFGLSYFNVTDWYYQLDSAFVNAWMSLWAFKFYFQQKRNYSKE 395
Query: 239 -------------------RKLFRFSLLHLPALMILLLINKK 261
R+ F S+LHLPA++IL +++KK
Sbjct: 396 IYNNKTEFNKGLAMANVYARRTFWVSVLHLPAVLILAILHKK 437
>sp|Q6FUG4|COX10_CANGA Protoheme IX farnesyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX10 PE=3 SV=1
Length = 451
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 169/296 (57%), Gaps = 27/296 (9%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ YA++P P + L ++GT + S AANA+N E +D QM RT+ R +VRG ++P
Sbjct: 157 ICSYALSPYPATVTELLCLTVGTTMCSGAANAINMGREPDYDRQMIRTQARPVVRGAVTP 216
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
A FA GT++LY GVN AALGL N+ LY+ +YT +KR I NTWVG++VGA
Sbjct: 217 KQAFSFAFGMGTLGTSILYLGVNPTVAALGLSNIALYSWIYTSLKRKHIINTWVGALVGA 276
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA + GS + L+ +L+ WQFPHFN LS N+R +Y AGY M A NP
Sbjct: 277 IPPLMGWAAASPLTHPGS---WCLAGLLYAWQFPHFNTLSHNIRNEYKNAGYVMTAWKNP 333
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
L +LRY++ + + ++T+ ++ ++S +NA+ ++KFY + + S
Sbjct: 334 LLNARVALRYSLLMFPLCFGLSYFNITDWYYQIDSGLVNAWLCLWSFKFYMQQRLNYSSK 393
Query: 239 -------------------RKLFRFSLLHLPALMILLLINKKH---WASHGSDAAK 272
RK F S+LHLPA++IL +++KK+ W S+ K
Sbjct: 394 IKNDRVKFNEGLATANVYARKAFFASVLHLPAVLILAILHKKNRWDWLFEDSENPK 449
>sp|P21592|COX10_YEAST Protoheme IX farnesyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX10 PE=3
SV=1
Length = 462
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 161/282 (57%), Gaps = 24/282 (8%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ YA++P P + L ++GT L S +ANA+N E FD QM RT+ R +VRG ++P
Sbjct: 166 ICSYALSPYPASVNELLCLTVGTTLCSGSANAINMGREPEFDRQMVRTQARPVVRGDVTP 225
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
A FA G ++LYFGVN A LG N+ LY YT MKR I NTW+G++VG
Sbjct: 226 TQAFEFAALIGTLGVSILYFGVNPTVAILGASNIALYGWAYTSMKRKHIINTWLGALVGM 285
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
+PPLMGWAA + G++ L+ +LF WQFPHFN LS N+R +Y AGY M A NP
Sbjct: 286 VPPLMGWAAASPL---SHPGSWCLAGLLFAWQFPHFNTLSHNIRNEYKNAGYVMTAWKNP 342
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
L SLRY++ + + ++T+ ++ ++S +NA+ T+ A+KFY + + S
Sbjct: 343 LLNARVSLRYSILMFPLCFGLSYFNITDWYYQIDSGLINAWLTFWAFKFYWQQRINYSAK 402
Query: 239 -------------------RKLFRFSLLHLPALMILLLINKK 261
RK F S+LHLPA++IL +I+KK
Sbjct: 403 TLKDNVKFNKGLSVANIYARKTFMASVLHLPAILILAIIHKK 444
>sp|Q4WP81|COX10_ASPFU Protoheme IX farnesyltransferase, mitochondrial OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=cox10 PE=3 SV=1
Length = 512
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 155/261 (59%), Gaps = 14/261 (5%)
Query: 15 SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG 74
+FL + GT L S +AN +N E +D+ MSRT+NR LVRG+LS A+ FA+A++AAG
Sbjct: 208 TFLYLTTGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAG 267
Query: 75 TAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSL 134
+LY G N T AL N+ LY VYTP+KRIS+ NTWVG+VVG IPPLMGW A G
Sbjct: 268 LGLLYIGTNPTTTALSASNICLYAFVYTPLKRISVINTWVGAVVGGIPPLMGWTAAAGQT 327
Query: 135 L-------------DGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
S G +LL ILF WQFPHFNALS+ +R +Y AGYRM+A TNP
Sbjct: 328 ATTGHDSWRDMLFSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKAAGYRMLAWTNPA 387
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSS-SSRK 240
+LRY++ + S + V F + S N + AYKF++ ++ S+R+
Sbjct: 388 ANARVALRYSLLMFPFSVGLWWVGVVGNGFLVGSTAANGWLVKEAYKFWRHQGANGSARR 447
Query: 241 LFRFSLLHLPALMILLLINKK 261
LF S+ LP L++ L+ KK
Sbjct: 448 LFWASIWQLPILLVGGLVTKK 468
>sp|P0C150|COX10_MAGO7 Protoheme IX farnesyltransferase, mitochondrial OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=COX10 PE=3 SV=1
Length = 552
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 150/251 (59%), Gaps = 15/251 (5%)
Query: 26 VSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGL 85
S+AANA+N +E D+ MSRT+ R LVR +++ A+ FAL + G L FGVN
Sbjct: 260 CSAAANALNMIYEPKTDALMSRTRTRPLVRNLVTTRAAVCFALFCATTGILALQFGVNPT 319
Query: 86 TAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSG------ 139
A LG N+VLY +YTP+KR+S NTWVG+VVG IPPLMGWAA G G G
Sbjct: 320 VAFLGAANIVLYAGIYTPLKRVSALNTWVGAVVGGIPPLMGWAAAAGESAVGDGSWRELL 379
Query: 140 --------GAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYT 191
G +L +A+LFTWQFPHF ALSW +R +Y AG RM+A TNP +LRY
Sbjct: 380 LAPDGSSAGGWLFAALLFTWQFPHFMALSWGVRDEYRAAGLRMLAWTNPARNARVALRYG 439
Query: 192 VALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYK-ESDSSSSRKLFRFSLLHLP 250
+ + + + VT FA+ S+P+N + + +F++ + + S+R LF S+ HLP
Sbjct: 440 LVFVPLCVGLCAVGVTEWSFAVTSLPVNLWLARESIRFWQTQGAAGSARGLFWASVWHLP 499
Query: 251 ALMILLLINKK 261
+M+L L+ KK
Sbjct: 500 VVMVLALLQKK 510
>sp|Q75F43|COX10_ASHGO Protoheme IX farnesyltransferase, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX10 PE=3 SV=1
Length = 435
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 164/294 (55%), Gaps = 25/294 (8%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ YA++P P L ++GT L S+AAN +N E FD QM RT+ R +VRG+++P
Sbjct: 142 ICSYALSPYPATVLELLSLTVGTTLCSAAANGINMGREPDFDRQMMRTQARPVVRGLVTP 201
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
+ A F+ S GTA+LY GVN A LG N+VLY+ YT +KR I NTW G++ GA
Sbjct: 202 MQAYKFSAVSGVIGTAILYAGVNPTVALLGASNIVLYSWFYTSLKRKHIINTWFGAITGA 261
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA + G + L+ +L+ WQFPHFN LS N+R +Y AG+ M A NP
Sbjct: 262 IPPLMGWAAASPLT---HPGCWCLAGLLYAWQFPHFNTLSHNIRNEYKNAGHVMTAWKNP 318
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
L +LRY++ + + +T+ + ++S +N + ++ A+KF+ + + S
Sbjct: 319 KLNARVALRYSLLMFPLCFGLSYYGITDWTYQIDSALVNGWMSFWAFKFWWQQRYNYSKK 378
Query: 239 -------------------RKLFRFSLLHLPALMILLLINKK-HWASHGSDAAK 272
RK F S+LHLPA++IL +++KK W SD K
Sbjct: 379 VYNNKAEFNKGMVLANVYARKTFWVSVLHLPAVLILAIVHKKGRWDWLFSDEGK 432
>sp|Q5BCK8|COX10_EMENI Protoheme IX farnesyltransferase, mitochondrial OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=cox10 PE=3 SV=1
Length = 506
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 151/261 (57%), Gaps = 14/261 (5%)
Query: 15 SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG 74
+FL + GT L + +AN +N E +D+QMSRT+NR LVRG+++ A+ FA+A++A G
Sbjct: 200 TFLYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVG 259
Query: 75 TAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGS- 133
+LYFG N L N+ LY VYTP+KR+ + NTW+G++VG IPP+MGW A G
Sbjct: 260 LGLLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIPPMMGWVAAAGQG 319
Query: 134 ------------LLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
+ S G +LL ILF WQFPHFNALS +R +Y AGY+M+ TNP
Sbjct: 320 ATTGHDTWRDMLFGENSLGGWLLGGILFAWQFPHFNALSHTIREEYKGAGYKMLCWTNPA 379
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSS-SSRK 240
+LRY+V + +S + F + S N + T AY F+K ++ ++R
Sbjct: 380 RNARVALRYSVLMFPLSIGLWWAGIVGHGFLVSSTVANGWLTKEAYGFWKHQGANGTARG 439
Query: 241 LFRFSLLHLPALMILLLINKK 261
LF S+ LP L++ L+ KK
Sbjct: 440 LFWASIWQLPILLVGALVTKK 460
>sp|O64886|COX10_ARATH Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis
thaliana GN=COX10 PE=2 SV=4
Length = 431
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 151/277 (54%), Gaps = 11/277 (3%)
Query: 22 GTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81
GT +++++AN++NQ E+ DS+M RT R L G +S HA+ +A + A+G +L
Sbjct: 138 GTMMIAASANSLNQIFEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASK 197
Query: 82 VNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGA 141
N L A L N+VLY VYTP+K++ NTWVG+VVGAIPPL+GWAA +G + S +
Sbjct: 198 TNMLAAGLASANLVLYAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQI---SYNS 254
Query: 142 FLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL--TSLRYTVALLVVSA 199
+L A L+ WQ PHF AL+ R DY+ GY+M+++ +P R+ +LR ++ +
Sbjct: 255 MILPAALYFWQIPHFMALAHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGF 314
Query: 200 AGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLI- 258
+T+ WF LES L A+ FY++ +RK+F SLL LP M LL+
Sbjct: 315 IAYDWGLTSSWFCLESTLLTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLH 374
Query: 259 -----NKKHWASHGSDAAKDSIEVSVQPSIDSLITPP 290
N++ S EV Q + PP
Sbjct: 375 RVSNDNQQQLVEEAGLTNSVSGEVKTQRRKKRVAQPP 411
>sp|Q01YC2|COXX_SOLUE Protoheme IX farnesyltransferase OS=Solibacter usitatus (strain
Ellin6076) GN=ctaB PE=3 SV=1
Length = 292
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 146/243 (60%), Gaps = 7/243 (2%)
Query: 21 LGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80
+GTGL++S A+NQ++E D +M RT R L G L AL F +A S AG L+
Sbjct: 51 IGTGLIASGTAALNQWYEREGDLKMHRTAGRPLPSGRLIAGRALAFGVALSIAGFVELWL 110
Query: 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGG 140
GVN L+A +G F + Y +YTPMKR + +T VG++ GA+PP++G+AA G L S
Sbjct: 111 GVNLLSAGIGAFTLASYLFLYTPMKRRTWWSTTVGAIPGAMPPVIGFAAAAGGLTRES-- 168
Query: 141 AFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLR---YTVALLVV 197
++L AILF WQFPHF +++W + DY+RAG +M+ V +PD CR T+ + Y +AL+ V
Sbjct: 169 -WVLFAILFLWQFPHFYSIAWMYKEDYARAGIQMLPVVDPD-CRSTARQIVIYGIALIPV 226
Query: 198 SAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLL 257
S LL ++ + + ++ L +F Y + E +R + S+L+LP + L+L
Sbjct: 227 SLVPALLGMSGRLYLVGALLLGLWFLYSGVRVALERTLVRARGVLITSVLYLPLIYGLML 286
Query: 258 INK 260
+++
Sbjct: 287 LDR 289
>sp|Q3IJQ0|CYOE2_PSEHT Protoheme IX farnesyltransferase 2 OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=cyoE2 PE=3 SV=1
Length = 309
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 141/245 (57%), Gaps = 5/245 (2%)
Query: 18 ICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAM 77
I LG GL+S+AA +N + DS+M+RT++R + +G LS HAL FA AG M
Sbjct: 64 ISLLGIGLLSAAAAVINHVVDSEIDSKMARTRHRPVAKGRLSKAHALSFAAIIGVAGFIM 123
Query: 78 LYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLD 136
L N LTA L LF +V Y VYT +KR + N +G + GA+PPL+GW + TG +
Sbjct: 124 LMLWANTLTAILTLFALVGYAFVYTSFLKRATPQNIVIGGLAGAMPPLLGWVSETGQM-- 181
Query: 137 GSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYTVALL 195
+ +LL I+FTW PHF AL+ + DY+RA M+ VT+ D + + Y+V L
Sbjct: 182 -AAAPWLLVMIIFTWTPPHFWALAIARKSDYARAKIPMLPVTHGIDFSKTCVVAYSVLLA 240
Query: 196 VVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMIL 255
+V L+ ++ + + + + LNA F Y A K ++ ++ LFRFS++HL L I+
Sbjct: 241 IVCIFPYLIGMSGLIYLIGASGLNAVFIYKAIKLKLAANDDTAMDLFRFSIIHLMVLFII 300
Query: 256 LLINK 260
L I+K
Sbjct: 301 LFIDK 305
>sp|A5FJD0|COXX_FLAJ1 Protoheme IX farnesyltransferase OS=Flavobacterium johnsoniae
(strain ATCC 17061 / DSM 2064 / UW101) GN=ctaB PE=3 SV=2
Length = 300
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 18/271 (6%)
Query: 1 MAGYAMA---PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57
+AGY + PF+WS ++ ++G + A+NA NQ E DS M RTKNR + G
Sbjct: 34 IAGYLLGVNDEHPFKWSVLIVLAIGGYCMVGASNAYNQVIEKDIDSLMDRTKNRPVASGR 93
Query: 58 LSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSV 117
+S + AL A + G +LY +N +A ++ LYTS+YTP+K ++ + +VG+
Sbjct: 94 MSKVTALIVASLLTIIGIVLLY-TINAKSAMFAAISIFLYTSIYTPLKTVTSLSVFVGAF 152
Query: 118 VGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAV 177
GAIP ++GW A TG +G FL+ F WQFPHF ++ W L DY++AG M+
Sbjct: 153 PGAIPFMLGWVAATGEFGIEAGTLFLIQ---FFWQFPHFWSIGWFLYDDYAKAGIFMLPT 209
Query: 178 TNPDLCRLTSLR---YTVALLVVSAAGPLLDVTNVWF-----ALESIPLNAYFTYLAYKF 229
N D R T+L+ YT+ L++ S P+L T F A+ L + + A +
Sbjct: 210 GNKD--RKTALQVILYTIWLIIASLL-PVLGYTGQLFISPVAAVLVFLLGLWMLFYAVRL 266
Query: 230 YKESDSSSSRKLFRFSLLHLPALMILLLINK 260
Y+ ++R L S+ ++ L I+ +++K
Sbjct: 267 YQLRTPKAARTLMLVSVSYISLLQIVFIVDK 297
>sp|Q2S012|COXX_SALRD Protoheme IX farnesyltransferase OS=Salinibacter ruber (strain DSM
13855 / M31) GN=ctaB PE=3 SV=2
Length = 283
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 130/257 (50%), Gaps = 9/257 (3%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHA--L 64
+P + + L LGT L + +N E +D+QM RT R L G P A +
Sbjct: 29 SPTGLDGGTLLWTMLGTALCAGGVGTLNHVLERRYDAQMKRTAQRPLPAGRADPKMARRV 88
Query: 65 GFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPL 124
G L A G +L VN LTA L VLY VYTP+KR + NT VG+V GA+P L
Sbjct: 89 GILLVCLAVG--LLCPLVNVLTAVLAALTAVLYLFVYTPLKRTTKWNTLVGTVPGALPAL 146
Query: 125 MGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDL-C 183
G+ A TG L G F IL TWQ PHF +L+W R DY+R Y M+ V PD
Sbjct: 147 GGYTAATGHLGAGGWATF---GILATWQMPHFLSLAWMYRKDYARGDYAMLPVVEPDGNS 203
Query: 184 RLTSLRYTVALLVVSAAGPLLDVTNVW-FALESIPLNAYFTYLAYKFYKESDSSSSRKLF 242
+ ALLV + P+L W + + +PL +F + F+ E ++++
Sbjct: 204 TAAQMIGFAALLVPVSVLPVLTEAAGWIYGVGVVPLGLWFLWTTIVFHGERTGQKAKRVL 263
Query: 243 RFSLLHLPALMILLLIN 259
+ S+L++P L+ LLL++
Sbjct: 264 KASVLYIPGLVALLLVD 280
>sp|Q3J6R6|CYOE_NITOC Protoheme IX farnesyltransferase OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=cyoE PE=3 SV=1
Length = 299
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 5/250 (2%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
W FL +LG GL +++A A+N + D+ M+RT+ R L G LS AL FA+
Sbjct: 47 WRVFLFGTLGIGLGAASAAAINHLIDEKADAVMNRTQGRPLPTGKLSREQALAFAITLGL 106
Query: 73 AGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACT 131
+ +LYF VN LTA L L +M+ Y +YT +K + N +G GA+PP++GWAA T
Sbjct: 107 SSMIILYFLVNPLTAWLTLASMIGYGIIYTAFLKPATPQNIVLGGASGAMPPVLGWAAVT 166
Query: 132 GSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRY 190
G L AFLL I+F W PHF AL+ R +YSR Y M+ VT+ D + + Y
Sbjct: 167 GEL---HVHAFLLFLIIFVWTPPHFWALALARREEYSRTKYPMLPVTHGVDFTKQQIVLY 223
Query: 191 TVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLP 250
T L VS + ++ + + + +I L F YL Y+ + + + K F +S+++L
Sbjct: 224 TFLLFAVSLLPFVSHMSGLLYLVGAIGLGGRFVYLTIVLYRNTSNELAMKTFGYSIVYLA 283
Query: 251 ALMILLLINK 260
AL LL++
Sbjct: 284 ALFAFLLVDH 293
>sp|A1SY55|CYOE_PSYIN Protoheme IX farnesyltransferase OS=Psychromonas ingrahamii (strain
37) GN=cyoE PE=3 SV=1
Length = 311
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 5/246 (2%)
Query: 17 LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTA 76
L+ G GL+SS+A +N + D++M RTKNR LVR +S AL F+ G +
Sbjct: 66 LLSLFGIGLLSSSAAVINHIVDSKIDAKMVRTKNRPLVRKAVSRRQALIFSAVIGTLGFS 125
Query: 77 MLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLL 135
+L F N LTA + LF +V Y VYT +KR + N +G + GA+PPL+GW + TG L
Sbjct: 126 LLVFAANWLTAQMTLFALVGYAFVYTMFLKRATPQNIVIGGLAGAMPPLLGWISETGQL- 184
Query: 136 DGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYTVAL 194
+ ++L I+FTW PHF AL+ + + DY++A M+ VT+ D + L Y++ L
Sbjct: 185 --AAQPWILVMIIFTWTPPHFWALAIHRKADYAKAKIPMLPVTHGTDFTKTCILLYSLLL 242
Query: 195 LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMI 254
VV L+ ++ + ++ +N F Y A S + LF++S+LHL L I
Sbjct: 243 TVVCFLPFLIHMSGYLYLFVAMLINIIFIYKAVALKLSETSYGALNLFKYSILHLTLLFI 302
Query: 255 LLLINK 260
L +K
Sbjct: 303 ALFADK 308
>sp|Q0VN94|CYOE_ALCBS Protoheme IX farnesyltransferase OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=cyoE PE=3 SV=1
Length = 303
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 5/249 (2%)
Query: 14 SSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAA 73
++F+ +G L A+ A+NQ + D+ M RT+ R LV G L+P A+ FA+ + A
Sbjct: 43 ATFIPAFVGLSLAMMASAAINQIMDQKIDAIMKRTEKRPLVAGKLTPKAAITFAVLLATA 102
Query: 74 GTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTG 132
MLYF VN LTA L LF V Y +YT +KR + N +G + GAIPPL+GW A TG
Sbjct: 103 SMIMLYFLVNPLTAWLTLFGFVGYAFIYTLYLKRATPQNIVIGGIAGAIPPLLGWTAVTG 162
Query: 133 SLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYT 191
+ A+LL I+F W PHF AL+ + R +Y++A M+ VT+ R + L YT
Sbjct: 163 ---EAHPYAWLLVLIIFVWTPPHFWALAIHRRDEYAKADIPMLPVTHGIPFTRESVLYYT 219
Query: 192 VALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPA 251
+ L + + L ++++ + L ++ L F Y A + D K F +S+ +L A
Sbjct: 220 ILLFICTLLPYLTGMSDLIYLLSALILGLVFLYHAVRLRFSEDPKLPMKTFGYSITYLFA 279
Query: 252 LMILLLINK 260
L LL++
Sbjct: 280 LFTALLVDH 288
>sp|Q2IPE5|COXX_ANADE Protoheme IX farnesyltransferase OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=ctaB PE=3 SV=2
Length = 295
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 131/259 (50%), Gaps = 4/259 (1%)
Query: 3 GYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLH 62
G +AP + ++ L T +V AANA+N Y E D++M RT++R L G + P
Sbjct: 40 GMWLAPGQIGAARAVLTVLATAVVVGAANALNCYLERDIDARMRRTRDRPLPAGRVDPFV 99
Query: 63 ALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIP 122
ALG +A+ A +L NGLTA L L ++ Y VYTPMK+ S +VG+V GAIP
Sbjct: 100 ALGLGIAAPAFAIPILSLAANGLTALLALVALLTYVLVYTPMKQRSATALFVGAVPGAIP 159
Query: 123 PLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMA-VTNPD 181
PLMGW + TG + G L +LF WQ PHF A+S LR DY R G RM A V
Sbjct: 160 PLMGWTSVTGGV---DAGGLALFGLLFAWQLPHFLAISLYLREDYQRGGLRMFASVHGER 216
Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
RL T+ LL S A L + +A+ + L + A +R
Sbjct: 217 ATRLWMALTTILLLPASLALVPLGLAGTGYAITAAVLGLALSAYAISGIGREGGRWARTF 276
Query: 242 FRFSLLHLPALMILLLINK 260
F +L+HL L + L +++
Sbjct: 277 FLGTLVHLTVLFVALFLSR 295
>sp|Q15N01|CYOE2_PSEA6 Protoheme IX farnesyltransferase 2 OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=cyoE2 PE=3 SV=1
Length = 305
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 129/238 (54%), Gaps = 5/238 (2%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
W L G G +SSAA +N + D+QM+RT NR + +G +SP AL FA +
Sbjct: 53 WKILLAGLTGIGFLSSAAAVINHVVDRKIDAQMARTSNRPMPKGKVSPQRALVFAGVLTV 112
Query: 73 AGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACT 131
G +L VN LTA L L ++V Y +YT +KR + N +G + GA PPL+GW A T
Sbjct: 113 VGYLILELWVNRLTALLTLASLVGYAFIYTMYLKRATPQNIVIGGLAGAAPPLLGWTAVT 172
Query: 132 GSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP-DLCRLTSLRY 190
D A LL I+F W PHF AL+ + DY+RA M+ T+ + + + L Y
Sbjct: 173 N---DIHAHALLLVLIIFIWTPPHFWALAIHREKDYARAKIPMLPCTHGIEFTKTSILLY 229
Query: 191 TVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248
TV L ++S L+ +T + L S LNA F Y A+K SD ++ K F+FS++H
Sbjct: 230 TVLLALISVLPYLIGMTGAIYLLGSSALNAGFLYYAWKLKFASDEHTAMKTFKFSIIH 287
>sp|B8GPF3|CYOE_THISH Protoheme IX farnesyltransferase OS=Thioalkalivibrio sp. (strain
HL-EbGR7) GN=cyoE PE=3 SV=1
Length = 302
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 134/256 (52%), Gaps = 5/256 (1%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
P W + L LG GL +++ A+N + D+ M RT+NR L G L AL F
Sbjct: 43 VPGMVPWHTMLFGLLGIGLAAASGAALNHVIDRRIDAVMDRTRNRPLPTGQLETQKALVF 102
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
A+A +L VN LTA L F ++ Y +YT +KR + N G + GA+PPL+
Sbjct: 103 AIAMGVVAMGILVLAVNVLTAVLTFFALIGYAVIYTVFLKRTTPQNIVWGGLAGALPPLL 162
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCR 184
GW A TG + + LL ++F W PHF AL+ R DY+RAG M+ VT+ +
Sbjct: 163 GWVAVTGQI---TVEPLLLVLLIFVWTPPHFWALAIRRREDYARAGIPMLPVTHGVAFTK 219
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
L L YT+ LL VS ++ +T + + + ++ L F + AY+ ++ D + F +
Sbjct: 220 LQVLLYTLMLLTVSLVPFIIHMTGLIYLVGALALGIGFVFHAYRLWRSPDDRYAMPTFGY 279
Query: 245 SLLHLPALMILLLINK 260
S+ +L A+ LLL++
Sbjct: 280 SIFYLTAMFALLLVDH 295
>sp|B1Y6Q4|COXX_LEPCP Protoheme IX farnesyltransferase OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=ctaB PE=3 SV=1
Length = 305
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 136/257 (52%), Gaps = 7/257 (2%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
AP + L +LG LV+SAA A N E DS+M RT R RG LS AL F
Sbjct: 45 APGLADLGKALWATLGIWLVASAAAAFNCLIEQQIDSRMKRTAWRPTARGELSRTQALIF 104
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLM 125
+ +AG A+L+ VN LTA L L V Y +YT +K ++ N +G + GA+PPL+
Sbjct: 105 SAVLCSAGMAVLHEAVNPLTAWLTLGTFVGYAVIYTVVLKPLTPQNIVIGGISGAMPPLL 164
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP-DLCR 184
GWAA TG + G G +L I+F W PHF AL+ DY+RAG M+ VT+ + R
Sbjct: 165 GWAAMTGEV--GPEG-LILCLIIFLWTPPHFWALALYRAEDYARAGLPMLPVTHGNEFTR 221
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFAL-ESIPLNAYFTYLAYKFYKESDSSSSRKLFR 243
L L YT LL + P + + W L + L F + A++ ++ + +R+ FR
Sbjct: 222 LQILLYTFVLLAGTLL-PFVQGMSGWLYLAAAFVLGLRFIHYAWRLWRNYSEALARQTFR 280
Query: 244 FSLLHLPALMILLLINK 260
FS+ HL L LL++
Sbjct: 281 FSIWHLSLLFAALLVDH 297
>sp|C5BKU5|CYOE_TERTT Protoheme IX farnesyltransferase OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=cyoE PE=3 SV=1
Length = 311
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P+P ++ +LG GL + AA AVN + D +M+RT +R + G ++P +AL F+
Sbjct: 50 PSPAPLWLLVLGNLGIGLCAGAAAAVNHLVDRHVDVKMARTFHRPVANGRITPTNALLFS 109
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMG 126
G +L +N LTA L L +++ Y +YT +KR + N +G + GA PPL+G
Sbjct: 110 ALLGGVGLWILSSFINALTAWLTLASLLGYAVIYTLFLKRATPQNIVIGGLAGAAPPLLG 169
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
W A TG LDG G LL I+F W PHF AL+ + +Y++AG M+ VT+ D RL
Sbjct: 170 WTAVTGE-LDGHG--LLLVLIIFAWTPPHFWALALYRKKEYAKAGIPMLPVTHGDSYTRL 226
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
+ YTV L+ V+ + + + ++ L A F Y A K D + F+FS
Sbjct: 227 HIVLYTVILIAVTLLPFATRMMGYCYLVGALVLGAGFLYRALKLLVSKDPKQGLETFKFS 286
Query: 246 LLHLPALMILLLIN 259
+++L AL +++L++
Sbjct: 287 IIYLMALFVVMLVD 300
>sp|A1TWQ8|CYOE_MARAV Protoheme IX farnesyltransferase OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=cyoE PE=3 SV=2
Length = 302
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 142/255 (55%), Gaps = 5/255 (1%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
AP EWS L +LG L++ AA VN + D+ M+RT+ R + G ++PL AL F
Sbjct: 44 APGVPEWSVLLFGNLGIALLAGAAAVVNHVVDQKIDTVMARTRKRPVATGRIAPLDALLF 103
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
A +A G +L + VN LTA L L ++V Y VYT +KR + N +G + GA+PPL+
Sbjct: 104 ATVLAALGMVVLVWQVNELTAWLTLASLVGYAGVYTLFLKRATPQNIVIGGLAGAMPPLL 163
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCR 184
GW A TG + G A LL I+F W PHF AL+ + + +Y++AG M+ VT+ +
Sbjct: 164 GWTAVTGQV---EGHALLLVLIIFAWTPPHFWALAIHRKEEYAKAGIPMLPVTHGNRYTE 220
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
L L YT+ LL VS + ++ + + ++ L F A + + D + F++
Sbjct: 221 LHILLYTLMLLAVSLLPFVTGMSGGIYLVGALALGLRFLQYAVRLLRGDDRRVALNTFKY 280
Query: 245 SLLHLPALMILLLIN 259
S+ +L AL ++LL++
Sbjct: 281 SITYLMALFVVLLVD 295
>sp|Q0ADH9|COXX_NITEC Protoheme IX farnesyltransferase OS=Nitrosomonas eutropha (strain
C91) GN=ctaB PE=3 SV=1
Length = 298
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 134/256 (52%), Gaps = 5/256 (1%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
P L+ ++G LV+ AA A+N E FD+ M+RTK R L +G +S L F
Sbjct: 42 VPGAVPLDKLLLGTIGISLVAGAAAALNCLVEYKFDAIMARTKGRPLPQGKVSVPETLFF 101
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
+ G +L+ +N LT L L V Y +YT +K ++ N +G GA+PP++
Sbjct: 102 LVMVGGLGLFILHQWINPLTMWLTLGTFVGYAIIYTVILKPLTPQNIVIGGASGAMPPVL 161
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCR 184
GWAA TG + S A LL I+F W PHF AL+ + DY++ G M+ VT+ + R
Sbjct: 162 GWAAITGEI---SADALLLFLIIFAWTPPHFWALALYRKSDYAKIGMPMLPVTHGEEFTR 218
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
L L YT+ L + + L ++ + + + + L+A F Y A + Y +R+ FR+
Sbjct: 219 LHVLLYTIILCIATVLPYLTQMSGLIYLVSVLILDAIFLYYAIRIYLHYTDQIAREAFRY 278
Query: 245 SLLHLPALMILLLINK 260
S+++L L LL++
Sbjct: 279 SIIYLALLFTALLVDH 294
>sp|Q13CY5|COXX_RHOPS Protoheme IX farnesyltransferase OS=Rhodopseudomonas palustris
(strain BisB5) GN=ctaB PE=3 SV=1
Length = 313
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 138/265 (52%), Gaps = 9/265 (3%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ G +AP F + L + AA A+N ++E D+ M+RT NR + RG ++
Sbjct: 41 LVGMLLAPGDFHPVLAVTAMLCIAVGGGAAGALNMWYENDIDALMTRTANRPIPRGRVTR 100
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVG 119
AL F + S L VN + AAL F + Y +YT +KR + N +G G
Sbjct: 101 PEALTFGMTLSFFSVVTLGVLVNWIAAALLAFTIFFYVVIYTMWLKRSTAQNIVIGGAAG 160
Query: 120 AIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMM-AVT 178
A+PP++ WAA TGSL + LL AI+F W PHF AL+ DY+RAG M+ V
Sbjct: 161 ALPPVVAWAAVTGSL---AVEPLLLFAIIFFWTPPHFWALALFRNDDYARAGVPMLPVVA 217
Query: 179 NPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSS-- 236
PD RL L YT+ L+ V+AA L + + + S+ L + LA + Y+ S
Sbjct: 218 GPDHTRLQILLYTIVLVAVAAAPWPLGYFDAVYGIASLALGGWMLVLAIRVYRHRSGSAA 277
Query: 237 --SSRKLFRFSLLHLPALMILLLIN 259
++R LF+FS+L+L AL +LLI
Sbjct: 278 LRATRNLFKFSILYLFALFSILLIE 302
>sp|Q82VQ6|COXX_NITEU Protoheme IX farnesyltransferase OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=ctaB PE=3 SV=1
Length = 298
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 5/259 (1%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
P + ++G LV+ AA A+N E FD+ M+RTK R L +G +S L F
Sbjct: 42 VPGAVPLDKLIFGTVGISLVAGAAAALNCLVEYKFDAIMARTKGRPLPQGKVSVPETLFF 101
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
+ G ML+ VN LT L L V Y +YT +K ++ N +G GA+PP++
Sbjct: 102 LVLIGGFGLFMLHQWVNPLTMWLTLGTFVGYAIIYTVILKPLTPQNIVIGGASGAMPPVL 161
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCR 184
GWAA TG + S A LL I+F W PHF AL+ + DY++ G M+ VT+ D R
Sbjct: 162 GWAAVTGEI---SADALLLFLIIFAWTPPHFWALALYRKTDYAKIGMPMLPVTHGDEFTR 218
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
L L YT+ L VV+ L ++ + + + L+A F Y A + Y +R+ FR+
Sbjct: 219 LHVLLYTIILCVVTVLPYLTQMSGLIYLGSVLILDAIFFYYAIRIYLHYTDQIAREAFRY 278
Query: 245 SLLHLPALMILLLINKKHW 263
S+ +L L LL++ +
Sbjct: 279 SIAYLALLFTALLVDHYFY 297
>sp|Q5R0Y6|CYOE_IDILO Protoheme IX farnesyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=cyoE PE=3 SV=1
Length = 298
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 128/240 (53%), Gaps = 5/240 (2%)
Query: 22 GTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81
G GL+S+AA A+N + D++M+RT R L +G LSP FA + G LY
Sbjct: 59 GIGLMSAAAAAINHLVDRHIDAKMARTLRRPLPQGNLSPAKVTTFAASIGVIGFVTLYAW 118
Query: 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGG 140
VN LTA L +MV Y VYT +KR + N +G + GA PPL+GW + T + +
Sbjct: 119 VNPLTAWLTFASMVGYAVVYTMFLKRATPQNIVIGGLAGAAPPLLGWTSVTNEI---NAP 175
Query: 141 AFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYTVALLVVSA 199
A LL I+FTW PHF AL+ + DY+RA M+ VT+ + + YTV L VV
Sbjct: 176 AVLLVMIIFTWTPPHFWALAVHRAKDYARAKVPMLPVTHGIEFTKTCIFLYTVLLTVVCL 235
Query: 200 AGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLIN 259
L+ +T + + + LNA F A+K ++ +F FS+ HL L ++LL++
Sbjct: 236 MPFLIGMTGMIYLVGVSVLNAIFLAYAWKLKYSPSKKTAFNMFAFSIWHLMLLFVILLVD 295
>sp|A4VS42|CYOE_PSEU5 Protoheme IX farnesyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=cyoE PE=3 SV=1
Length = 299
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 5/250 (2%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
W+ L +LG L + A AVN + DS M+RT R L G +SP AL FA
Sbjct: 47 WTVLLFGNLGIALCAGGAAAVNHVVDRQIDSVMARTHKRPLAEGRVSPAAALTFAFVLGV 106
Query: 73 AGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACT 131
+G A+L N L A L L +++ Y +YT +KR + N +G + GA PPL+GW A T
Sbjct: 107 SGLALLLTFTNALAAWLTLASLIGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVT 166
Query: 132 GSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRY 190
G + + LL I+F W PHF AL+ + + +Y++ M+ VT+ ++ L Y
Sbjct: 167 GQV---TAEPLLLVLIIFAWTPPHFWALAIHRKDEYAKVNVPMLPVTHGVHYTKVHILLY 223
Query: 191 TVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLP 250
T LL VS + ++ + ++ L A F Y Y++S ++ K F+FS+ +L
Sbjct: 224 TAMLLAVSFMPFAIHMSGPLYLAAAVLLGARFLYWTIALYRDSRPHAAIKTFKFSIWYLF 283
Query: 251 ALMILLLINK 260
AL I LL++
Sbjct: 284 ALFIALLVDH 293
>sp|Q9RM98|COXX_BRAJA Protoheme IX farnesyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=ctaB PE=3 SV=1
Length = 314
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 136/267 (50%), Gaps = 17/267 (6%)
Query: 1 MAGYAMAPAPFE----WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRG 56
+ G AMAP F +S L ++G G A+ A+N E D++MSRT NR + RG
Sbjct: 40 LVGMAMAPGHFHPVLAITSLLCIAVGAG----ASGALNMALEGDIDAKMSRTANRPIPRG 95
Query: 57 VLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVG 115
++ A+ F + + L VN + AL F + Y +YT +KR + N +G
Sbjct: 96 RITRPEAMTFGMTLAFFSVMTLGILVNWIAGALLAFTIFFYVVIYTMWLKRWTAQNIVIG 155
Query: 116 SVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMM 175
GA+PP++ WAA TG++ LL AI+F W PHF AL+ DY+RAG M+
Sbjct: 156 GAAGALPPVVAWAAVTGTV---DVEPLLLFAIIFFWTPPHFWALALFRSDDYARAGIPML 212
Query: 176 A-VTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD 234
V PD RL L YT+ L+ V+AA L + + + S+ L A LA Y +
Sbjct: 213 PNVAGPDATRLQILLYTIVLIAVAAAPWALGYFDAVYGVVSLILGAGMLVLAINVYMRRE 272
Query: 235 SSSS----RKLFRFSLLHLPALMILLL 257
S S RKLF FS+L+L AL LL
Sbjct: 273 RSQSLRATRKLFAFSILYLFALFATLL 299
>sp|Q48AB7|CYOE_COLP3 Protoheme IX farnesyltransferase OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=cyoE PE=3 SV=2
Length = 306
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 5/240 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W + LG GL+SSAA A+N + D+ M RT NR L G +S +A+ FA
Sbjct: 49 PGALPWQRLIPAMLGIGLLSSAAAAINHIVDEKIDTVMGRTHNRPLPAGKISVTNAIVFA 108
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMG 126
+ + G +LY VN LTA L L +V Y+ VYT +KR + N +G + GAIPPL+G
Sbjct: 109 TSIALLGFIILYALVNPLTAFLTLAGLVGYSFVYTMYLKRATPQNITIGGLAGAIPPLLG 168
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRL 185
W A T ++ A LL I+FTW PHF AL+ + + DY++ M+ VT+ +
Sbjct: 169 WTAMTNEVVP---NALLLVLIIFTWTPPHFWALAIHRKNDYAKVNIPMLPVTHGVSFTKT 225
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L VV L+ ++N + + + LN F A++ + ++ F+FS
Sbjct: 226 QILLYTVLLFVVCLLPYLVGMSNWLYLIGACSLNLIFFGYAWQLKFNAKEGTAMATFKFS 285
>sp|B0TNS4|CYOE_SHEHH Protoheme IX farnesyltransferase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=cyoE PE=3 SV=1
Length = 301
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 5/244 (2%)
Query: 22 GTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81
G G+++ +A A N + D M+RT NR L +G +S AL F+ + G +LY
Sbjct: 60 GIGMMAGSAAAFNHLIDRRIDGLMARTYNRPLPKGRVSIAKALTFSCSLGILGFVVLYVL 119
Query: 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGG 140
VN LTA L +++ Y VYT +KR + N VG + GA+PPL+GW A TG + G
Sbjct: 120 VNPLTAWLTFASLIGYAVVYTAYLKRATPQNIVVGGLAGAMPPLLGWTAVTG---EFHGN 176
Query: 141 AFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYTVALLVVSA 199
A LL I+F W PHF AL+ + R +Y++ M+ VT+ + + YT+ L +
Sbjct: 177 ALLLVIIIFAWTPPHFWALAIHRRVEYAKVDIPMLPVTHGVEFTKTCIFLYTILLAIACL 236
Query: 200 AGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLIN 259
L+ + + + S L+ F Y A++ + + KLF+FS+ HL L I LL++
Sbjct: 237 LPVLVGMCGPVYLVSSTLLSVTFIYKAWQLKFHEEPGMAMKLFKFSIYHLMLLFIALLVD 296
Query: 260 KKHW 263
W
Sbjct: 297 HYLW 300
>sp|Q089F2|CYOE2_SHEFN Protoheme IX farnesyltransferase 2 OS=Shewanella frigidimarina
(strain NCIMB 400) GN=cyoE2 PE=3 SV=1
Length = 303
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 5/246 (2%)
Query: 22 GTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81
G +++ +A A N + D M+RT NR L +G +S A+ FA++ + G +LY
Sbjct: 60 GIAMMAGSAAAFNHLIDRKIDGLMARTYNRPLPKGKISTTKAVTFAVSLGSLGFVVLYTL 119
Query: 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGG 140
VN LTA L +++ Y VYT +KR + N +G + GA+PPL+GW A T L G
Sbjct: 120 VNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAITNEL---HGY 176
Query: 141 AFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLRYTVALLVVSA 199
A LL I+FTW PHF AL+ + R +Y++ M+ VT+ + + L YT+ L +
Sbjct: 177 ALLLVIIIFTWTPPHFWALAIHRRKEYAKVDIPMLPVTHGVEFTKTCILLYTILLAIACL 236
Query: 200 AGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLIN 259
L+ + + + S L+ F Y A++ S ++F+FS+ HL L I+LL++
Sbjct: 237 LPVLVGMCGPIYLVGSTVLSCGFIYKAWQLKFHDYPELSMQVFKFSIYHLMVLFIVLLVD 296
Query: 260 KKHWAS 265
W +
Sbjct: 297 HYFWVN 302
>sp|A1UZV8|COXX_BURMS Protoheme IX farnesyltransferase OS=Burkholderia mallei (strain
SAVP1) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTIWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|Q62F61|COXX_BURMA Protoheme IX farnesyltransferase OS=Burkholderia mallei (strain
ATCC 23344) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTIWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|A2S646|COXX_BURM9 Protoheme IX farnesyltransferase OS=Burkholderia mallei (strain
NCTC 10229) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTIWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|A3MQ44|COXX_BURM7 Protoheme IX farnesyltransferase OS=Burkholderia mallei (strain
NCTC 10247) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTIWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|Q63XS7|COXX_BURPS Protoheme IX farnesyltransferase OS=Burkholderia pseudomallei
(strain K96243) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTMWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|A3N5D1|COXX_BURP6 Protoheme IX farnesyltransferase OS=Burkholderia pseudomallei
(strain 668) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTMWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|Q3JWF7|COXX_BURP1 Protoheme IX farnesyltransferase OS=Burkholderia pseudomallei
(strain 1710b) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTMWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|A3NR29|COXX_BURP0 Protoheme IX farnesyltransferase OS=Burkholderia pseudomallei
(strain 1106a) GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTIGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTMWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGALFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|Q2SQU8|CYOE_HAHCH Protoheme IX farnesyltransferase OS=Hahella chejuensis (strain KCTC
2396) GN=cyoE PE=3 SV=1
Length = 299
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 148/252 (58%), Gaps = 9/252 (3%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
W++ ++ +LG L++S+A A+N + D+ M+RT+ R +V+G + +HAL FA + +
Sbjct: 46 WNALILGNLGIALLASSAAAINHIVDQKIDAVMARTQKRPIVQGRVDNVHALTFAFSLAV 105
Query: 73 AGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACT 131
G A+L +GVN LTA L L +++ Y VYT +KR + N +G + GA PPL+GW + T
Sbjct: 106 VGMAILAWGVNPLTAWLTLASLIGYAVVYTLFLKRATPQNIVLGGLAGAAPPLLGWTSVT 165
Query: 132 GSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYT 191
G++ A LL I+F W PHF AL+ + + +Y++AG M+ VT+ D R T L
Sbjct: 166 GTV---DPHALLLVLIIFAWTPPHFWALAVHRKDEYAKAGVPMLPVTHGD--RYTKLHIL 220
Query: 192 VALLVVSAAGPLLDVTNV--W-FALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248
+ L++ AA L +T + W + + ++ L F A+ +++S ++ K FR+S+ +
Sbjct: 221 LYTLMLFAASMLPFITGMCGWIYFVAALALGVRFLDWAWAMWRDSRKHAAIKTFRYSITY 280
Query: 249 LPALMILLLINK 260
L L + LL +
Sbjct: 281 LMLLFVALLADH 292
>sp|Q2T1F6|COXX_BURTA Protoheme IX farnesyltransferase OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=ctaB PE=3 SV=1
Length = 300
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P W L ++G GL++ +A A+N E D+ M RT R RG ++ L L F+
Sbjct: 41 PGMVPWKVLLGGTVGIGLLAGSAFAINCLVEQKIDAMMRRTAWRPSARGEITTLQILAFS 100
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVVGAIPPLMG 126
G LY N LT L + V Y +YT +K ++ N +G GA+PP +G
Sbjct: 101 TVLGGLGAWTLYTFTNPLTMWLTIATFVGYAVIYTLLLKPMTPQNIVIGGASGAMPPALG 160
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD-LCRL 185
WAA TG++ G A++L I+F W PHF L+ R DY AG M+ VT+ + RL
Sbjct: 161 WAAVTGAV---PGDAWILVLIIFVWTPPHFWVLALYRRKDYENAGLPMLPVTHGEQFTRL 217
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245
L YTV L V+ + ++ + ++ L A F A+K Y++ + +R+ FR+S
Sbjct: 218 HILLYTVILFAVTMMPFISGMSGAVYLTSAVLLGAIFLAYAWKIYRDYSDALARRAFRYS 277
Query: 246 LLHLPALMILLLINKKHWA 264
+++L L LL++ H+A
Sbjct: 278 IVYLSLLFAALLVD--HYA 294
>sp|A9GEU3|COXX_SORC5 Protoheme IX farnesyltransferase OS=Sorangium cellulosum (strain So
ce56) GN=ctaB PE=3 SV=2
Length = 280
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 129/244 (52%), Gaps = 11/244 (4%)
Query: 21 LGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80
LGT LV S ANA+N Y E D M RT++R L LSP AL F +A SAA +L
Sbjct: 42 LGTVLVVSGANALNMYIERDTDLLMERTRSRPLPARRLSPELALWFGIALSAASIPVLLV 101
Query: 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGG 140
GVN T L ++ Y VYTP+KR + + +G++ GAIPPL+GW + TG +D G
Sbjct: 102 GVNATTGVLAAAALLSYVLVYTPLKRRTTLSLPIGAIPGAIPPLLGWTSVTGQ-IDAPG- 159
Query: 141 AFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAA 200
FLL A++F WQ PHF A+S + +Y RAG +++ + D LT+ R+ V L +
Sbjct: 160 -FLLFAVMFLWQIPHFLAISLFRQDEYQRAGLKVLPLEKGD---LTTRRHIVGYLALLVL 215
Query: 201 G-----PLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMIL 255
PL V+ + A+F Y + + +R++F S+++L L
Sbjct: 216 SSVLFVPLGVAGPVYLGAAILLGGAFFGLGVYGLRAGTGARWARQVFFASMVYLVLLFAA 275
Query: 256 LLIN 259
L+I
Sbjct: 276 LMIG 279
>sp|A1WBL5|COXX_ACISJ Protoheme IX farnesyltransferase OS=Acidovorax sp. (strain JS42)
GN=ctaB PE=3 SV=1
Length = 306
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 134/256 (52%), Gaps = 7/256 (2%)
Query: 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA 67
P+ +W+ + S G LV+ AA A N E D++M RT R +G LS L F+
Sbjct: 52 PSGAQWALMAVASAGIWLVAGAAAAFNCIVEQGIDAKMKRTAWRPTAKGELSNTQTLLFS 111
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMG 126
AAG+A+LY+ VN LT L V Y +YT +K ++ N +G GA+PP++G
Sbjct: 112 ALLCAAGSALLYWWVNPLTMWLTFATFVGYAVIYTVILKPLTPQNIVIGGASGAMPPVLG 171
Query: 127 WAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP-DLCRL 185
WAA TG + A +L I+F W PHF AL+ DY ++G M+ VT+ + RL
Sbjct: 172 WAAMTGEV---GPEALILFLIIFLWTPPHFWALALYRVEDYRKSGLPMLPVTHGNEFTRL 228
Query: 186 TSLRYTVALLVVSAAGPLLDVTNVWFAL-ESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
YT+ +L P + + W L ++ L+A F ++ +++ + +RK FRF
Sbjct: 229 QVFLYTL-ILFAGCLMPFVYGMSSWIYLAAAVVLSAGFCLYGFRLWRDYSDTLARKTFRF 287
Query: 245 SLLHLPALMILLLINK 260
SL+HL L LL++
Sbjct: 288 SLIHLSLLFAALLVDH 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,029,802
Number of Sequences: 539616
Number of extensions: 4081990
Number of successful extensions: 11507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 9565
Number of HSP's gapped (non-prelim): 734
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)