Query psy13659
Match_columns 306
No_of_seqs 223 out of 1754
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:04:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0109 CyoE Polyprenyltransfe 100.0 4.1E-57 9E-62 415.9 20.7 257 2-261 39-298 (304)
2 PLN02776 prenyltransferase 100.0 2.6E-55 5.5E-60 414.8 27.9 260 2-264 16-278 (341)
3 KOG1380|consensus 100.0 3.5E-55 7.5E-60 401.0 13.2 274 1-277 114-387 (409)
4 PRK13362 protoheme IX farnesyl 100.0 4.1E-50 9E-55 377.2 27.7 256 2-260 34-294 (306)
5 PRK04375 protoheme IX farnesyl 100.0 7.3E-49 1.6E-53 367.7 27.8 256 3-261 32-290 (296)
6 TIGR01473 cyoE_ctaB protoheme 100.0 2.8E-48 6.1E-53 360.9 28.6 254 3-259 22-280 (280)
7 PRK12869 ubiA protoheme IX far 100.0 8E-48 1.7E-52 357.8 28.6 252 3-258 24-278 (279)
8 PRK12873 ubiA prenyltransferas 100.0 2.2E-47 4.9E-52 355.6 25.0 252 3-260 32-292 (294)
9 PRK12886 ubiA prenyltransferas 100.0 1.3E-46 2.7E-51 351.6 27.2 253 3-261 30-285 (291)
10 PRK12895 ubiA prenyltransferas 100.0 1.4E-46 2.9E-51 349.7 25.2 252 3-261 25-281 (286)
11 PRK12848 ubiA 4-hydroxybenzoat 100.0 5.1E-46 1.1E-50 346.3 25.9 249 3-259 30-281 (282)
12 PRK12870 ubiA 4-hydroxybenzoat 100.0 6.7E-46 1.4E-50 346.6 24.5 250 3-260 34-288 (290)
13 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.7E-45 3.6E-50 342.6 26.2 242 11-260 37-280 (281)
14 PRK12874 ubiA prenyltransferas 100.0 5.2E-45 1.1E-49 340.6 29.1 243 9-260 42-288 (291)
15 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.1E-45 4.6E-50 342.5 26.3 250 3-260 32-285 (285)
16 PRK12888 ubiA prenyltransferas 100.0 5.6E-45 1.2E-49 339.4 27.0 246 7-260 32-281 (284)
17 PLN02809 4-hydroxybenzoate non 100.0 7.6E-45 1.7E-49 339.0 27.8 243 10-260 41-286 (289)
18 PRK12878 ubiA 4-hydroxybenzoat 100.0 3.9E-45 8.4E-50 344.7 24.9 243 10-260 68-312 (314)
19 PRK12876 ubiA prenyltransferas 100.0 4.3E-44 9.3E-49 333.7 26.0 245 10-260 43-296 (300)
20 PRK13106 ubiA prenyltransferas 100.0 1.3E-43 2.8E-48 332.1 24.7 251 3-260 37-295 (300)
21 TIGR01475 ubiA_other putative 100.0 2.3E-43 5E-48 328.3 25.9 253 3-260 24-280 (282)
22 KOG1381|consensus 100.0 8.7E-43 1.9E-47 313.1 10.9 242 11-261 100-345 (353)
23 PRK09573 (S)-2,3-di-O-geranylg 100.0 6.3E-40 1.4E-44 304.8 25.9 248 3-260 25-276 (279)
24 COG0382 UbiA 4-hydroxybenzoate 100.0 1.1E-38 2.5E-43 297.8 27.7 242 11-259 44-287 (289)
25 PRK12882 ubiA prenyltransferas 100.0 2.6E-38 5.5E-43 293.5 24.9 244 3-254 26-273 (276)
26 PRK12884 ubiA prenyltransferas 100.0 3E-37 6.5E-42 286.5 26.3 237 3-249 26-265 (279)
27 PRK12871 ubiA prenyltransferas 100.0 4.9E-35 1.1E-39 274.1 26.7 251 3-260 27-295 (297)
28 PRK12883 ubiA prenyltransferas 100.0 3.5E-34 7.6E-39 265.9 26.0 239 3-253 25-270 (277)
29 PRK07566 bacteriochlorophyll/c 100.0 2.1E-32 4.5E-37 258.4 27.0 239 16-261 67-312 (314)
30 PLN00012 chlorophyll synthetas 100.0 3E-32 6.4E-37 262.0 26.2 224 16-247 125-359 (375)
31 PRK06080 1,4-dihydroxy-2-napht 100.0 5.4E-29 1.2E-33 232.8 29.1 227 9-242 33-271 (293)
32 TIGR02056 ChlG chlorophyll syn 100.0 1.1E-28 2.3E-33 232.4 25.7 162 17-185 57-229 (306)
33 TIGR01476 chlor_syn_BchG bacte 100.0 1.3E-28 2.8E-33 229.3 25.3 167 11-185 34-207 (283)
34 PRK12392 bacteriochlorophyll c 100.0 1.9E-28 4E-33 232.6 24.2 204 20-233 56-274 (331)
35 PRK05951 ubiA prenyltransferas 100.0 6.3E-27 1.4E-31 219.4 28.0 171 9-184 35-216 (296)
36 PF01040 UbiA: UbiA prenyltran 100.0 1.2E-27 2.6E-32 217.5 22.0 171 9-185 18-192 (257)
37 PRK12887 ubiA tocopherol phyty 100.0 1.4E-26 3E-31 218.1 26.9 213 16-237 51-283 (308)
38 PRK12872 ubiA prenyltransferas 100.0 1.5E-26 3.2E-31 215.3 24.5 240 12-258 34-280 (285)
39 PRK13592 ubiA prenyltransferas 99.9 6E-26 1.3E-30 210.1 22.6 220 12-248 44-285 (299)
40 PRK13595 ubiA prenyltransferas 99.9 3E-25 6.4E-30 206.1 22.2 223 3-247 34-269 (292)
41 PRK13387 1,4-dihydroxy-2-napht 99.9 6.5E-24 1.4E-28 200.7 28.4 244 9-258 34-313 (317)
42 TIGR00751 menA 1,4-dihydroxy-2 99.9 2.5E-23 5.4E-28 193.9 28.5 232 9-246 23-271 (284)
43 PLN02878 homogentisate phytylt 99.9 1.4E-22 3.1E-27 186.4 24.8 167 14-185 23-202 (280)
44 PRK13105 ubiA prenyltransferas 99.9 2.6E-22 5.7E-27 186.5 26.8 173 3-185 23-206 (282)
45 PRK08238 hypothetical protein; 99.9 6.4E-22 1.4E-26 196.3 23.2 130 13-150 225-356 (479)
46 COG1575 MenA 1,4-dihydroxy-2-n 99.9 8.1E-21 1.8E-25 176.0 27.1 242 10-258 40-299 (303)
47 PRK07419 1,4-dihydroxy-2-napht 99.9 1.1E-20 2.3E-25 177.7 27.6 170 9-186 43-221 (304)
48 PRK12324 phosphoribose diphosp 99.9 5E-21 1.1E-25 179.1 24.9 120 13-135 45-166 (295)
49 PLN02922 prenyltransferase 99.9 2.3E-20 5E-25 176.3 28.2 169 9-185 46-234 (315)
50 TIGR02235 menA_cyano-plnt 1,4- 99.9 1.9E-20 4.2E-25 174.6 27.1 170 9-186 30-208 (285)
51 PRK12875 ubiA prenyltransferas 99.9 1.4E-20 3.1E-25 175.2 23.8 144 31-185 62-211 (282)
52 PRK13591 ubiA prenyltransferas 99.9 8.6E-20 1.9E-24 170.5 20.9 159 8-185 56-225 (307)
53 KOG4581|consensus 99.5 1.1E-14 2.5E-19 129.2 3.0 233 11-254 96-347 (359)
54 PRK12884 ubiA prenyltransferas 95.3 0.97 2.1E-05 41.9 15.4 43 142-185 40-82 (279)
55 PRK12875 ubiA prenyltransferas 95.0 0.15 3.2E-06 47.8 8.9 94 20-118 171-271 (282)
56 PRK09573 (S)-2,3-di-O-geranylg 94.7 1.7 3.6E-05 40.4 15.2 50 144-194 42-91 (279)
57 PRK12882 ubiA prenyltransferas 92.6 2.1 4.5E-05 39.7 11.9 49 145-194 44-92 (276)
58 COG0382 UbiA 4-hydroxybenzoate 92.2 6.8 0.00015 36.5 15.0 44 147-190 55-99 (289)
59 PRK12883 ubiA prenyltransferas 91.8 6.3 0.00014 36.5 14.1 39 153-192 51-89 (277)
60 PRK13592 ubiA prenyltransferas 91.3 7.2 0.00016 36.9 13.8 49 145-194 52-100 (299)
61 PRK12847 ubiA 4-hydroxybenzoat 91.2 6.3 0.00014 36.7 13.5 46 149-194 55-101 (285)
62 PRK12324 phosphoribose diphosp 90.8 15 0.00032 34.7 15.8 38 154-191 61-99 (295)
63 TIGR01474 ubiA_proteo 4-hydrox 89.8 1.2 2.6E-05 41.5 7.4 50 8-59 155-204 (281)
64 TIGR02056 ChlG chlorophyll syn 89.7 11 0.00024 35.5 14.0 36 149-185 64-99 (306)
65 PRK12872 ubiA prenyltransferas 89.2 3.3 7.1E-05 38.4 9.7 37 20-57 167-203 (285)
66 PRK12874 ubiA prenyltransferas 88.3 1.9 4.1E-05 40.5 7.6 48 8-57 162-209 (291)
67 PF01040 UbiA: UbiA prenyltran 88.3 4.7 0.0001 36.1 10.0 35 149-183 33-68 (257)
68 PRK12869 ubiA protoheme IX far 87.3 20 0.00044 33.2 13.8 48 145-192 42-90 (279)
69 TIGR01473 cyoE_ctaB protoheme 87.2 8 0.00017 35.9 11.0 42 146-187 42-84 (280)
70 PRK13362 protoheme IX farnesyl 86.8 26 0.00057 33.1 14.4 43 152-194 60-103 (306)
71 PRK04375 protoheme IX farnesyl 86.0 11 0.00023 35.5 11.2 42 149-190 54-96 (296)
72 PLN02809 4-hydroxybenzoate non 85.8 15 0.00032 34.5 12.1 44 149-192 55-99 (289)
73 PRK12871 ubiA prenyltransferas 85.7 4.9 0.00011 37.9 8.8 48 9-58 171-218 (297)
74 PRK12888 ubiA prenyltransferas 85.4 18 0.0004 33.7 12.5 59 124-185 26-86 (284)
75 TIGR01476 chlor_syn_BchG bacte 85.3 5.7 0.00012 36.9 9.0 37 148-185 47-83 (283)
76 PLN00012 chlorophyll synthetas 84.9 5.9 0.00013 38.7 9.1 47 9-57 248-294 (375)
77 PRK13105 ubiA prenyltransferas 84.7 4.9 0.00011 37.7 8.2 57 18-78 164-220 (282)
78 TIGR01475 ubiA_other putative 84.3 1.3 2.8E-05 41.3 4.2 39 18-57 162-200 (282)
79 PRK07419 1,4-dihydroxy-2-napht 84.1 7.1 0.00015 37.0 9.1 58 9-71 170-227 (304)
80 PRK12887 ubiA tocopherol phyty 83.5 37 0.00081 32.1 13.8 27 158-185 72-98 (308)
81 PRK13591 ubiA prenyltransferas 83.1 3.8 8.2E-05 39.0 6.8 25 32-57 197-221 (307)
82 PRK12848 ubiA 4-hydroxybenzoat 83.1 20 0.00043 33.4 11.6 46 149-194 52-98 (282)
83 PRK07566 bacteriochlorophyll/c 81.4 7.5 0.00016 36.9 8.2 46 10-57 186-231 (314)
84 PLN02922 prenyltransferase 80.8 7.5 0.00016 37.0 8.0 51 16-70 190-240 (315)
85 PRK13595 ubiA prenyltransferas 80.7 25 0.00055 33.2 11.3 23 158-181 66-88 (292)
86 PRK12870 ubiA 4-hydroxybenzoat 80.6 27 0.00059 32.7 11.6 39 152-190 59-98 (290)
87 PRK13387 1,4-dihydroxy-2-napht 80.1 8.6 0.00019 36.6 8.1 53 19-75 194-246 (317)
88 PRK12392 bacteriochlorophyll c 78.6 8.9 0.00019 36.8 7.8 46 10-57 177-222 (331)
89 PRK12878 ubiA 4-hydroxybenzoat 78.3 38 0.00083 32.1 11.9 47 148-194 81-128 (314)
90 PRK08238 hypothetical protein; 77.8 25 0.00053 35.6 10.9 40 154-193 241-281 (479)
91 TIGR02235 menA_cyano-plnt 1,4- 77.7 14 0.00031 34.6 8.7 61 9-74 157-217 (285)
92 PLN02776 prenyltransferase 77.1 45 0.00098 32.2 12.0 47 148-194 38-85 (341)
93 PRK12895 ubiA prenyltransferas 76.0 59 0.0013 30.5 12.3 41 154-194 52-93 (286)
94 PRK05951 ubiA prenyltransferas 75.0 42 0.00091 31.5 11.1 48 132-182 35-87 (296)
95 PRK12873 ubiA prenyltransferas 74.7 63 0.0014 30.5 12.2 39 156-194 61-100 (294)
96 COG1575 MenA 1,4-dihydroxy-2-n 74.7 17 0.00037 34.5 8.3 38 9-47 172-209 (303)
97 PRK13106 ubiA prenyltransferas 74.7 9.1 0.0002 36.2 6.5 42 19-61 182-223 (300)
98 PRK06080 1,4-dihydroxy-2-napht 74.6 72 0.0016 29.6 12.6 36 147-182 46-84 (293)
99 PRK12886 ubiA prenyltransferas 72.0 10 0.00022 35.6 6.2 48 9-58 158-205 (291)
100 TIGR00751 menA 1,4-dihydroxy-2 71.6 22 0.00049 33.2 8.4 60 9-73 160-219 (284)
101 PF13105 DUF3959: Protein of u 70.4 39 0.00084 29.9 8.8 47 236-282 120-169 (239)
102 PRK04214 rbn ribonuclease BN/u 70.2 63 0.0014 31.8 11.5 19 22-40 113-131 (412)
103 COG4147 DhlC Predicted symport 56.4 14 0.0003 37.4 3.9 93 17-119 356-455 (529)
104 PRK12876 ubiA prenyltransferas 50.9 2.2E+02 0.0047 27.0 10.9 36 156-191 64-100 (300)
105 PLN02878 homogentisate phytylt 47.6 81 0.0018 29.6 7.4 31 25-56 167-197 (280)
106 TIGR00267 conserved hypothetic 46.9 65 0.0014 27.7 6.3 26 12-37 26-51 (169)
107 PRK10484 putative transporter; 42.8 3.7E+02 0.008 27.1 16.0 18 23-40 346-363 (523)
108 KOG3146|consensus 40.4 1.3E+02 0.0028 27.2 7.2 35 99-134 143-179 (228)
109 PF08229 SHR3_chaperone: ER me 39.8 1.9E+02 0.0041 25.7 8.1 31 234-264 125-156 (196)
110 COG0109 CyoE Polyprenyltransfe 39.5 3.5E+02 0.0075 25.8 11.4 47 154-200 67-114 (304)
111 PF15111 TMEM101: TMEM101 prot 37.3 2.4E+02 0.0053 25.9 8.5 20 157-176 150-169 (251)
112 COG0738 FucP Fucose permease [ 37.2 1.2E+02 0.0027 30.1 7.2 77 57-133 298-386 (422)
113 PF07172 GRP: Glycine rich pro 36.4 33 0.00071 26.9 2.5 13 252-264 12-24 (95)
114 COG4125 Predicted membrane pro 33.6 26 0.00056 29.4 1.6 58 24-83 47-104 (149)
115 PRK09442 panF sodium/panthothe 33.0 2.5E+02 0.0055 27.9 8.9 16 24-39 339-354 (483)
116 TIGR00766 ribonuclease, putati 32.0 3.9E+02 0.0084 24.2 10.8 15 26-40 100-114 (263)
117 PRK01637 hypothetical protein; 30.9 4.3E+02 0.0093 24.4 12.6 27 98-124 188-216 (286)
118 PRK09597 lipid A 1-phosphatase 30.6 3.8E+02 0.0083 23.7 12.1 29 12-40 75-103 (190)
119 COG2832 Uncharacterized protei 29.1 1.3E+02 0.0027 24.7 4.8 48 60-108 70-117 (119)
120 PF11239 DUF3040: Protein of u 26.1 1.2E+02 0.0027 22.6 4.1 10 38-47 22-31 (82)
121 TIGR00765 yihY_not_rbn YihY fa 26.0 5E+02 0.011 23.5 10.6 20 21-40 95-114 (259)
122 PF01384 PHO4: Phosphate trans 25.9 5.8E+02 0.013 24.3 14.1 26 52-77 13-38 (326)
123 PF00873 ACR_tran: AcrB/AcrD/A 25.4 9.4E+02 0.02 26.5 12.7 42 164-205 940-983 (1021)
124 TIGR02711 symport_actP cation/ 25.1 5.9E+02 0.013 26.0 10.1 17 23-39 373-389 (549)
125 cd02431 Ferritin_CCC1_C CCC1-r 24.3 4.3E+02 0.0094 22.2 9.1 37 11-47 27-63 (149)
126 PRK12488 acetate permease; Pro 23.2 6.3E+02 0.014 25.8 9.9 16 24-39 374-389 (549)
127 cd02437 CCC1_like_1 CCC1-relat 22.3 4.3E+02 0.0092 22.6 7.3 26 12-37 31-56 (175)
128 KOG2513|consensus 21.9 1.2E+02 0.0026 31.6 4.2 38 19-56 489-527 (647)
129 PF02322 Cyto_ox_2: Cytochrome 21.8 7E+02 0.015 23.7 12.1 93 163-259 36-135 (328)
130 PF09874 DUF2101: Predicted me 20.6 6.2E+02 0.014 22.7 8.7 38 262-302 143-187 (206)
131 PRK09577 multidrug efflux prot 20.1 8.1E+02 0.018 27.3 10.5 13 123-135 906-918 (1032)
No 1
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-57 Score=415.87 Aligned_cols=257 Identities=40% Similarity=0.639 Sum_probs=246.3
Q ss_pred eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
+|+++|+ +..++..++...+|+.++.+++|++|+++|||+|++|+||++||+|+|+|+|+||+.++.++.++|+.++++
T Consensus 39 ~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~ 118 (304)
T COG0109 39 AGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWF 118 (304)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788887 678999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
..|+.+..+++.+++.|.++||. +||+|++|+++|++.|++|+++||+|++|+++ +.++++++++|+||++|+|++
T Consensus 119 ~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~~---~~a~~Lf~IiF~WtPpHfwAL 195 (304)
T COG0109 119 LVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSIS---LGAILLFAIIFLWTPPHFWAL 195 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCCC---chHHHHHHHHHHhccHHHHHH
Confidence 89999999999999999999999 99999999999999999999999999999999 899999999999999999999
Q ss_pred hhhcchhHHHcCCccccccCCch-hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDL-CRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
+++.+|||+++|++|+|++.|++ +++.+..|++.+.++++++.+.|..++.|.+++.++++++++.++++++++|++++
T Consensus 196 Al~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A 275 (304)
T COG0109 196 ALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWA 275 (304)
T ss_pred HHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 99999999999999999999984 77789999999999999888888889999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcc
Q psy13659 239 RKLFRFSLLHLPALMILLLINKK 261 (306)
Q Consensus 239 ~~~F~~s~~~~~~l~~~~l~~~~ 261 (306)
||+|+.|+.|+.++|+.+++|+.
T Consensus 276 ~klF~~S~~yL~~lf~~l~id~~ 298 (304)
T COG0109 276 RKLFKYSIIYLALLFVALLIDSL 298 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 2
>PLN02776 prenyltransferase
Probab=100.00 E-value=2.6e-55 Score=414.77 Aligned_cols=260 Identities=43% Similarity=0.662 Sum_probs=240.4
Q ss_pred eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
+|+++|. +.+++..+++..+|++++++++|++||++|+|+|++|+||++||+|+|++|+++|+.+++++.++|+.++.+
T Consensus 16 ~G~~lA~~~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~ 95 (341)
T PLN02776 16 AGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAY 95 (341)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677775 457888889999999999999999999999999999999999999999999999999999999999976655
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
++|+.++.+++.++++|.++||++||++++|+++|++.|++|+++||.|++|+++ +.+++++..+++||++||+.++
T Consensus 96 ~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~---~~~~~Lf~~~~~Wq~pHf~~la 172 (341)
T PLN02776 96 KTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLD---AGAMVLAAALYFWQMPHFMALA 172 (341)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred hhcchhHHHcCCccccccC--CchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTN--PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
++|+|||+++|+||+|+.. |+++++.+..|+..+.+++++++..|..+++|.+.++++++.+++.++++++++|++++
T Consensus 173 ~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~a 252 (341)
T PLN02776 173 YMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAASFYREPTNANA 252 (341)
T ss_pred HHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999976 46777788889988888888888888888888888888999999999999998889999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccccc
Q psy13659 239 RKLFRFSLLHLPALMILLLINKKHWA 264 (306)
Q Consensus 239 ~~~F~~s~~~~~~l~~~~l~~~~~~~ 264 (306)
||.|+.|++|++++++.+++|++.|.
T Consensus 253 r~~F~~Sl~yL~~l~~~~~~~~~~~~ 278 (341)
T PLN02776 253 RKMFHGSLLYLPAFMALLLLHRVPND 278 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999997664
No 3
>KOG1380|consensus
Probab=100.00 E-value=3.5e-55 Score=401.00 Aligned_cols=274 Identities=60% Similarity=1.028 Sum_probs=260.1
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 1 ~~G~~la~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
|.||+++|+++++..++.+.+|+.++++++|++||++|...|+||+||++||+|+|+|||.+|+.|+.+....|+.++++
T Consensus 114 ~~gYalap~p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~ 193 (409)
T KOG1380|consen 114 MTGYALAPGPFSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAF 193 (409)
T ss_pred cccccccccCCCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
..|+.+..+|..++++|..+||.+||+.+.|+|+|.++|++||++||+|++|.++ +..|++..++|.||+|||+.++
T Consensus 194 gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~---~ga~iLa~~LyaWQfPHFnaLS 270 (409)
T KOG1380|consen 194 GVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLD---PGAMILAGILYAWQFPHFNALS 270 (409)
T ss_pred cccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCC---ccHHHHHHHHHHhcccchhhhh
Confidence 7999999999999999999999999999999999999999999999999999998 8899999999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (306)
+.-|+||.++|++|+++....-++++.++|.+++.+++......+.++|+|.+-++++++++.+.++++++++|.+++||
T Consensus 271 ~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~~~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRk 350 (409)
T KOG1380|consen 271 WNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARK 350 (409)
T ss_pred hhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccccccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHH
Confidence 99999999999999999998877888999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhccccccCCCCcccccccc
Q psy13659 241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEV 277 (306)
Q Consensus 241 ~F~~s~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 277 (306)
+|+.|.+++|+++.++++++.+|.+.++|-+++.+++
T Consensus 351 lF~aSLlhLP~lmll~l~~k~~~~~qq~~~~~~~l~~ 387 (409)
T KOG1380|consen 351 LFFASLLHLPLLMLLMLIHKKGRDNQQPDGEEPGLTN 387 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcccccCcccc
Confidence 9999999999999999999998877666665555543
No 4
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=4.1e-50 Score=377.16 Aligned_cols=256 Identities=32% Similarity=0.506 Sum_probs=229.9
Q ss_pred eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
+|++++. +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++.++..+|+.++..
T Consensus 34 ~G~~la~~~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~ 113 (306)
T PRK13362 34 GGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAA 113 (306)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3555663 567887777888899999999999999999999999999999999999999999999999999999987755
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+.|+.+..++.++.+.|.++||. +||+++++.++|++.|++|+++||++++|+++ +..++++...++||.+||+++
T Consensus 114 ~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~---~~~~~l~~~~~~W~~~h~~~~ 190 (306)
T PRK13362 114 FTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFD---AGALILLLMFSLWQMPHSYAI 190 (306)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 67998887888888878899996 99999998778888889999999999999998 889999999999999999999
Q ss_pred hhhcchhHHHcCCccccccCCch-hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc--CChH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDL-CRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE--SDSS 236 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~--~~~~ 236 (306)
+++|+|||+++|+||+|+++|++ ++..+..|.++.+.++++++..|..++.|...+++.++.+++.+++++++ ++++
T Consensus 191 ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~ 270 (306)
T PRK13362 191 AIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTV 270 (306)
T ss_pred HHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence 99999999999999999999985 45567788888888888988888889999988888899999999999874 4557
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659 237 SSRKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 237 ~~~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
++||+|+.|++|++++++.+++|+
T Consensus 271 ~a~~~f~~S~~yl~~~~~~~~~~~ 294 (306)
T PRK13362 271 WARQLFGFSILTITALSVMMLLDF 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999975
No 5
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=7.3e-49 Score=367.66 Aligned_cols=256 Identities=39% Similarity=0.588 Sum_probs=227.0
Q ss_pred EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++. +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++..+..+|+.++++.
T Consensus 32 G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l 111 (296)
T PRK04375 32 GMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLF 111 (296)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556664 4578888889999999999999999999999999999999999999999999999999999999999887555
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
.|+.+..+++++++.|..+||. +||++++|+++|.+.|++|+++||++++|+++ +.++++++..++||.+|++.++
T Consensus 112 ~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~~l~~~~~lw~~~~~~~~~ 188 (296)
T PRK04375 112 VNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS---WEALILFLIIFLWTPPHFWALA 188 (296)
T ss_pred HhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888887766889999 99999889999988899999999999999988 8889999999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchh-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLC-RLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (306)
++|+|||+++|+||+|+++|+++ +..+..+.+..+.++++++..+..++.|.+.+++.++.+++.++++.+++++++|+
T Consensus 189 ~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (296)
T PRK04375 189 IFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWAR 268 (296)
T ss_pred HHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH
Confidence 99999999999999999999864 34566677777767777777776788887766677888899999999988899999
Q ss_pred HHHHHHhHHHHHHHHHHHHhcc
Q psy13659 240 KLFRFSLLHLPALMILLLINKK 261 (306)
Q Consensus 240 ~~F~~s~~~~~~l~~~~l~~~~ 261 (306)
|.|+.++++++++++++++++.
T Consensus 269 ~~F~~s~~~~~~i~~~~~~~~~ 290 (296)
T PRK04375 269 KLFRYSINYLTLLFVALLVDHL 290 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 6
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=2.8e-48 Score=360.94 Aligned_cols=254 Identities=44% Similarity=0.662 Sum_probs=223.5
Q ss_pred EEEecCCC--CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 3 GYAMAPAP--FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 3 G~~la~g~--~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
|++++.+. +++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|..++.++.++|+.++..
T Consensus 22 g~~la~~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~ 101 (280)
T TIGR01473 22 GMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAA 101 (280)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566432 6888889999999999999999999999999999999999999999999999999999999999986555
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
..|+.+..++++++++|.++||. +||++++|+++|.+.|++++++||++++|+++ +..++++...++||.+|++.+
T Consensus 102 ~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~ 178 (280)
T TIGR01473 102 FVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS---LGAWLLFAIIFLWQPPHFWAL 178 (280)
T ss_pred HHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 58998888888888777889995 99999999989889999999999999999998 888889999999999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-ChHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES-DSSS 237 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~-~~~~ 237 (306)
+++|+|||+++|+||+|+++|++++. .+..+.+.++.++.+++..+..++.|.+.+++.+..+++.++++++++ ++++
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~ 258 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFKFYRDPTDRKK 258 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999999986544 455566666667777776776788888777777888899999999877 7789
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q psy13659 238 SRKLFRFSLLHLPALMILLLIN 259 (306)
Q Consensus 238 ~~~~F~~s~~~~~~l~~~~l~~ 259 (306)
|+|.|+.|++|+++++..+++|
T Consensus 259 ~~~~f~~s~~~~~~~~~~~~~~ 280 (280)
T TIGR01473 259 ARKLFKFSLIYLALLFVALLID 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888764
No 7
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=8e-48 Score=357.84 Aligned_cols=252 Identities=26% Similarity=0.310 Sum_probs=216.5
Q ss_pred EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++. +.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||..++..+.++|+.+++++
T Consensus 24 g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~ 103 (279)
T PRK12869 24 GYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLL 103 (279)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555664 4578888888999999999999999999999999999999999999999999999999999999999988644
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
+|+.+..+..++.+.|..+||. +||++++|+++|.+.|++++++||++++|+++ +..++++...++|+.+|+++++
T Consensus 104 l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~ll~~~~~~w~~~~~~~l~ 180 (279)
T PRK12869 104 LGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD---LEAVLLSFLIYLWTPGHIWSLA 180 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888755545555566889998 99999999999999999999999999999988 8889999999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (306)
++|+|||+++|+||+|+++|++++. .+..+.+..+.++.+++. +..++.|.+..++.++.+++.+.++++++++++|+
T Consensus 181 ~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (279)
T PRK12869 181 LKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAILSAALMATSIRALLNPTKEEAW 259 (279)
T ss_pred HHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Confidence 9999999999999999999986443 444444444444444444 45688888777777888888998899888899999
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy13659 240 KLFRFSLLHLPALMILLLI 258 (306)
Q Consensus 240 ~~F~~s~~~~~~l~~~~l~ 258 (306)
|.|+.|++|++++++.+++
T Consensus 260 ~~f~~s~~~l~~~~~~~~~ 278 (279)
T PRK12869 260 KMFKASSPYLALFLLALII 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 8
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.2e-47 Score=355.59 Aligned_cols=252 Identities=19% Similarity=0.183 Sum_probs=208.3
Q ss_pred EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|+++++ +.+++..+++++++++++++++|++||++|||+|++|+||++||+|+|++|+++|+.++.++..+++.+++..
T Consensus 32 g~~la~~~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l 111 (294)
T PRK12873 32 SLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSL 111 (294)
T ss_pred HHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 3477888899999999999999999999999999999999999999999999999999999999999887533
Q ss_pred ---hHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcch--HHHHHHHHHHHhHhHHH
Q psy13659 82 ---VNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSG--GAFLLSAILFTWQFPHF 156 (306)
Q Consensus 82 ---l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~--~~~~l~~~~~~w~~~~~ 156 (306)
.|+.+..+++.+++. ..+||++||+|.++++++.+.+++|+++||.|++|+++ + ..+++++..++||.+||
T Consensus 112 ~~~~n~l~~~l~~~~~~~-~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~g~~~---~~~~~l~l~~~~~~W~~~~d 187 (294)
T PRK12873 112 PQPSRNLCLSLAFLALPP-ILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLN---GGWPLLFCWLATLLWTFGFD 187 (294)
T ss_pred hcchhHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHhHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHH
Confidence 378888888888875 89999999999996555555568999999999999988 5 33445688999999999
Q ss_pred HHhhhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC-
Q psy13659 157 NALSWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD- 234 (306)
Q Consensus 157 ~~~a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~- 234 (306)
+.|++||+|||+++|+||+|+++|+++.+ ....|.+..+.+..+++..+. ++.|.+... .....+.++++..+.++
T Consensus 188 ~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l-~~~y~~~~~-~~~~~l~~~~~~~~~~~~ 265 (294)
T PRK12873 188 TVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQV-GFIFWPFWL-IASIGMQRDILKLFPEKQ 265 (294)
T ss_pred HHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHH-HHHHHHHHHHHHhCcCcc
Confidence 99999999999999999999999986544 345666666666666777665 555554333 33455666777887665
Q ss_pred -hHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659 235 -SSSSRKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 235 -~~~~~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
+++|.+.|+.|.+.+.+++.++++++
T Consensus 266 ~~~~c~~~F~~n~~~G~~i~~g~~~~~ 292 (294)
T PRK12873 266 SIKTIGNHFSNQVILGSLLLLGLILAR 292 (294)
T ss_pred cHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 59999999999999999999998865
No 9
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-46 Score=351.60 Aligned_cols=253 Identities=17% Similarity=0.112 Sum_probs=209.6
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|+++| ++.+++..+++..++++++++++|++|||+|||+|++|+||++||+|+|++|++||..+...+.+.++.+. ..
T Consensus 30 g~~lA~~~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~-~~ 108 (291)
T PRK12886 30 GAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAA-WF 108 (291)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HH
Confidence 55566 35578888889999999999999999999999999999999999999999999999999766665555554 46
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSW 161 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~ 161 (306)
.|+.++.+++.+++. ..+||++||++.++.+++++.+++++++||.+++|+++ +.++++++..++||.+|++.+++
T Consensus 109 ~~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~---~~~~ll~~~~~lw~~~~~~~~a~ 184 (291)
T PRK12886 109 LNPLCLYLSPPALFF-LLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE---LPAILLGLAVLFWVAGFDILYAL 184 (291)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 899998888888877 88999999999995544444467999999999999988 88899999999999999999999
Q ss_pred hcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC-hHHHH
Q psy13659 162 NLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD-SSSSR 239 (306)
Q Consensus 162 ~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~-~~~~~ 239 (306)
+|+|||+++|+||+|+++|++++. ....+......++.++.+.+..++.|.+.+++.++.++ ++++..+++| +++|+
T Consensus 185 ~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 263 (291)
T PRK12886 185 QDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLAVTGILLL-YEHWLLRGGDLTRLDA 263 (291)
T ss_pred ccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHH
Confidence 999999999999999999987544 33345455555556666556567888777777777777 4777888777 46899
Q ss_pred HHHHHHhHHHHHHHHHHHHhcc
Q psy13659 240 KLFRFSLLHLPALMILLLINKK 261 (306)
Q Consensus 240 ~~F~~s~~~~~~l~~~~l~~~~ 261 (306)
+.|+.|.+++.++++++++|+.
T Consensus 264 ~~F~~~~~~~~~l~~~~~~~~~ 285 (291)
T PRK12886 264 AFFNMNGYISVTLFAATLFDRL 285 (291)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999988899999998754
No 10
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-46 Score=349.72 Aligned_cols=252 Identities=14% Similarity=0.146 Sum_probs=205.8
Q ss_pred EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|+++|. +.+++..+++.+++++++++++|++||++|||+|++|+||++||+|||++|++||+.++.+++++++.+++ +
T Consensus 25 g~~lA~~~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~-~ 103 (286)
T PRK12895 25 GYVIAAGHYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTF-L 103 (286)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H
Confidence 556664 44677777788889999999999999999999999999999999999999999999999999999988774 6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
+|+.++.++...+.+ ...|+++||+|++ |+++|...| +++++||.|++|+++.. ..++++++..++|+..+|+.|+
T Consensus 104 ln~l~~~l~~~~~~l-~~~yp~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~~~-~~~~~l~~~~~~W~~g~D~iYa 180 (286)
T PRK12895 104 LNRLVFILSPIVIFL-FIIDPFLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFPYN-LLIYIIFISSSLWIAGFDIIYV 180 (286)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 899998888877766 5677789999999 789999997 89999999999987611 2356788999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
+||+|||++.|+||+|+++|++++..+ ..+.+........++..+ +++|.+. +......+.++++..+.+|+++|
T Consensus 181 ~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~--~~~y~~~-~~~~~~~l~~q~~~~~~~~~~~~ 257 (286)
T PRK12895 181 IPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR--TLWYLAA-LIIIYTLVIYQHLIIDPRNPINK 257 (286)
T ss_pred hcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH-HHHHHHHHHHHHHHhcCCCHHHH
Confidence 999999999999999999999765432 344444443333333333 5556543 33445566677788888889999
Q ss_pred -HHHHHHHhHHHHHHHHHHHHhcc
Q psy13659 239 -RKLFRFSLLHLPALMILLLINKK 261 (306)
Q Consensus 239 -~~~F~~s~~~~~~l~~~~l~~~~ 261 (306)
++.|+.|.+++.+++++++++..
T Consensus 258 ~~~~F~~N~~ig~~~~~~~~~~~~ 281 (286)
T PRK12895 258 RMSFFNANSFIGFVFLIGIILSLR 281 (286)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHhc
Confidence 66799999999999999888764
No 11
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=5.1e-46 Score=346.25 Aligned_cols=249 Identities=22% Similarity=0.236 Sum_probs=211.5
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++ ++.+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++..+..+++.+++ .
T Consensus 30 g~~la~~~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~-~ 108 (282)
T PRK12848 30 ALWLAADGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVL-T 108 (282)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 44455 355777778888899999999999999999999999999999999999999999999999999999998774 6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
+|+.++.+++.+++. ..+||++||++.+ ++++|... ++++++||.+++++++ +.++++++..++||.+|++.|+
T Consensus 109 l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-g~~~~~g~~a~~~~~~---~~~~~l~~~~~~w~~~~~~~~a 183 (282)
T PRK12848 109 LNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAF-GWGIPMAFAAVQGSVP---LEAWLLFLANILWTVAYDTQYA 183 (282)
T ss_pred HhHHHHHHHHHHHHH-HHHHHhHHhcCcccHHHHHHHH-HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHH
Confidence 899998888888888 8899989999999 66667776 4788999999999988 8889999999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (306)
+||+|||+++|+||+|+++|++++. ....+.+..+.++.++++.+. ++.|.+...+.++.+.+. ++..+.+++++|+
T Consensus 184 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 261 (282)
T PRK12848 184 MVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGL-GWAYYWGLLVAAALFVYQ-QKLIRDREREACF 261 (282)
T ss_pred hccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHH
Confidence 9999999999999999999987543 456666666667777777765 666665554444444444 5577778899999
Q ss_pred HHHHHHhHHHHHHHHHHHHh
Q psy13659 240 KLFRFSLLHLPALMILLLIN 259 (306)
Q Consensus 240 ~~F~~s~~~~~~l~~~~l~~ 259 (306)
+.|+.|.+++.++++++++|
T Consensus 262 ~~F~~n~~~g~~l~~~~~~~ 281 (282)
T PRK12848 262 KAFLNNNWVGLVLFAGIAAS 281 (282)
T ss_pred HHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999998876
No 12
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.7e-46 Score=346.62 Aligned_cols=250 Identities=20% Similarity=0.192 Sum_probs=209.9
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|+++| ++.+++..+++.+++++++++++|++|||+|+|+|++|+||++||+|||++|++||..++.+++++++.++. .
T Consensus 34 g~~lA~~~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~ 112 (290)
T PRK12870 34 AVFLAAHGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAF-F 112 (290)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 44455 456788888899999999999999999999999999999999999999999999999999999999998885 6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
+|+.++.+++.+++. ..+||++||++.+ |+++|... ++++++||.+++|+++ +.++++++..++|+.+||+.++
T Consensus 113 l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~-~~~~l~g~~a~~g~~~---~~~~~l~~~~~lw~~~~d~~~a 187 (290)
T PRK12870 113 LNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAW-GFAVLISWSAVTGHLD---LGTWLLWAATVFWTLGFDTVYA 187 (290)
T ss_pred HhHHHHHHHHHHHHH-HHHhhhhhhccccceeeehHHH-HhHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 899998888888876 8899999999999 67777776 5899999999999998 7888999999999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--ccCChHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRLT-SLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFY--KESDSSS 237 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~--~~~~~~~ 237 (306)
+||+|||+++|+||+|+++|++++.. ...+......++.+++..|. +++|.+. +.+....+.+++... +.++++.
T Consensus 188 ~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 265 (290)
T PRK12870 188 MSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLEL-HLPFWIG-LAIAAVLWARQYRRLRQANLPPLA 265 (290)
T ss_pred hhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHH-HHHHHHHHHHHHHHhcccCCChHH
Confidence 99999999999999999999976553 33455566666677777775 4555443 333444445555555 3357789
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhc
Q psy13659 238 SRKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 238 ~~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
|++.|+.|.+++.+++++++++.
T Consensus 266 ~~~~F~~n~~~g~~~~~~~~~~~ 288 (290)
T PRK12870 266 YGQLFLQNVWIGFLLLAGMILGS 288 (290)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 13
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=1.7e-45 Score=342.60 Aligned_cols=242 Identities=23% Similarity=0.256 Sum_probs=204.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659 11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG 90 (306)
Q Consensus 11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~ 90 (306)
+++..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++.+++++|+.+++ .+|+.+..++
T Consensus 37 ~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~ 115 (281)
T TIGR01474 37 PPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLG 115 (281)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 577778888899999999999999999999999999999999999999999999999999999999875 5899999999
Q ss_pred HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659 91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR 169 (306)
Q Consensus 91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~ 169 (306)
+.++++ .+.||.+||++.+ +++.|.. +++++++||.+++|+++ +..++++...++|+.+|++.+++||+|||++
T Consensus 116 ~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~-~~~~~~~g~~a~~g~~~---~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~ 190 (281)
T TIGR01474 116 VASLAL-VATYPFMKRITYWPQLVLGLA-FGWGALMGWAAVTGDLS---TAAWVLYLANILWTLGYDTIYAMQDKEDDIK 190 (281)
T ss_pred HHHHHH-HHHhchhcccccccHHHHHHH-HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 999988 8999999999999 5566655 56999999999999988 7788888999999999999999999999999
Q ss_pred cCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhHH
Q psy13659 170 AGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248 (306)
Q Consensus 170 ~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~~ 248 (306)
+|+||+|+++|+++.+ ....+.+.....++.++..+ .++.|.+...+.+..+.+... ..+.+++++|++.|+.|.++
T Consensus 191 ~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~F~~~~~~ 268 (281)
T TIGR01474 191 IGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAG-LGPVYYLGLAAAALLLIRQIA-TLDIRDPENCLKLFKANNYV 268 (281)
T ss_pred cCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhhHH
Confidence 9999999999986544 33445555555555544444 466776655555555555555 44777888999999999999
Q ss_pred HHHHHHHHHHhc
Q psy13659 249 LPALMILLLINK 260 (306)
Q Consensus 249 ~~~l~~~~l~~~ 260 (306)
+.++++++++|.
T Consensus 269 ~~~l~~~~~~~~ 280 (281)
T TIGR01474 269 GLLLFAGIALGW 280 (281)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 14
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.2e-45 Score=340.65 Aligned_cols=243 Identities=16% Similarity=0.109 Sum_probs=193.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAA 88 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~ 88 (306)
+.+++..+++++++++++++++|++|||+|||+|++|+||++||+|||++|++||+.++..+.++++.+++ ++|+.+..
T Consensus 42 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~ 120 (291)
T PRK12874 42 GWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFK 120 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence 45788889999999999999999999999999999999999999999999999999999999988888774 58999988
Q ss_pred HHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhH
Q psy13659 89 LGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDY 167 (306)
Q Consensus 89 l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD 167 (306)
+++..++. ..+||++||++++ |+++|.. +++|+++||.+++|+++ +..+++++..++||.+|++.+++||+|||
T Consensus 121 l~~~~~~~-~~~Y~~~KR~t~~~~~~~g~~-~~~~~l~G~~av~g~~~---~~~~~l~~~~~~w~~~~~~~~a~~D~~~D 195 (291)
T PRK12874 121 LSFPFLIV-LGGYSYFKRFSSLAHLVLGLS-LGLAPIAGVVAVLGEIP---LWSVFLALGVMFWVAGFDLLYSLQDMEFD 195 (291)
T ss_pred HHHHHHHH-HHHHhhhcccccccHHHHHHH-HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 87655555 8899999999999 5555555 67999999999999988 77888999999999999999999999999
Q ss_pred HHcCCccccccCCchhHH-HHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy13659 168 SRAGYRMMAVTNPDLCRL-TSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS 245 (306)
Q Consensus 168 ~~~G~~tl~v~~G~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s 245 (306)
+++|+||+|+++|++++. .+..+.... +.....++..+ .+++| .+++++++.++++++++.+.++++. ++.|+.+
T Consensus 196 ~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ff~s 272 (291)
T PRK12874 196 KKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAH-LGLFA-YLGVIVSALILLYEHYLVRKDFKKI-DKAFFTL 272 (291)
T ss_pred HHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhc-chHHH-HHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHH
Confidence 999999999999986543 333333222 22222222222 23444 3566678888999999988777764 5566666
Q ss_pred hHHHHHHH-HHHHHhc
Q psy13659 246 LLHLPALM-ILLLINK 260 (306)
Q Consensus 246 ~~~~~~l~-~~~l~~~ 260 (306)
+.|+++++ +++++|.
T Consensus 273 n~~l~~l~~~~~~~~~ 288 (291)
T PRK12874 273 NGYLGIVFFIFIVLDV 288 (291)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 66666544 5555553
No 15
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-45 Score=342.50 Aligned_cols=250 Identities=21% Similarity=0.249 Sum_probs=212.8
Q ss_pred EEEec-CCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659 3 GYAMA-PAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80 (306)
Q Consensus 3 G~~la-~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~ 80 (306)
|++++ ++. +++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++..+.++|+.+++
T Consensus 32 g~~la~~~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~- 110 (285)
T PRK12847 32 GLLLASHSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILL- 110 (285)
T ss_pred HHHHHhCccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-
Confidence 34445 333 678888999999999999999999999999999999999999999999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
.+|+.++.+++.+++. ..+||.+||++.+ +++.|..+ ++++++||.+++|+++ +.++++++..++|+.+|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~l~~~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~ 185 (285)
T PRK12847 111 LLNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTF-NMGILMAFAAVQNQLD---IEAILLYIGCIFWTIGYDTIY 185 (285)
T ss_pred HHhHHHHHHHHHHHHH-HHhccccccCCcccHHHHHHHH-HHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888 8999999999999 56666665 5899999999999988 888999999999999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
++||+|||+++|+||+|+++|++++. ....+.+.....+.++++.|..+++|...++. ......+++..+.+++++|
T Consensus 186 a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~l~~~~~~~~~~~~~~~ 263 (285)
T PRK12847 186 AYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAILAA--AGIFYYQYKLLDFDNPANC 263 (285)
T ss_pred HhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--HHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999987544 44445555556666677777777777654432 3455566667778888999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc
Q psy13659 239 RKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 239 ~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
+|.|+.|.+++.++++++++++
T Consensus 264 ~~~f~~~~~~~~l~~~~~~~~~ 285 (285)
T PRK12847 264 MYAFKANHYVGLLLFLGAVLGR 285 (285)
T ss_pred HHHHHHhHHHHHHHHHHHHhCC
Confidence 9999999999999999988753
No 16
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-45 Score=339.35 Aligned_cols=246 Identities=20% Similarity=0.130 Sum_probs=201.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy13659 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLT 86 (306)
Q Consensus 7 a~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~ 86 (306)
+++.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||+.++..+..+++.++. .+|+.+
T Consensus 32 ~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~ 110 (284)
T PRK12888 32 SDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAA-LLNPLC 110 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHH
Confidence 3567899889999999999999999999999999999999999999999999999999999988888887764 689999
Q ss_pred HHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659 87 AALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP 165 (306)
Q Consensus 87 ~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e 165 (306)
+.++..+++. ..+||++||++.+ |.++|.. +++++++||++++|+++ +.++++++..++|+.+|++.|++||+|
T Consensus 111 ~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~lg~~-~~~~~l~g~~a~~g~~~---~~~~ll~~~~~~w~~~~~~i~a~~D~e 185 (284)
T PRK12888 111 LALAPLAVAP-LVVYPYAKRFTNFPHAILGLA-QAVGPVGAWIAVTGTWS---WPAVLLGLAVGLWIGGFDLIYACQDAE 185 (284)
T ss_pred HHHHHHHHHH-HHHHHHhhcccchhhHHHHHH-HHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888888777 7899999999999 6666776 57999999999999988 888999999999999999999999999
Q ss_pred hHHHcCCccccccCCchhHHH-H-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q psy13659 166 DYSRAGYRMMAVTNPDLCRLT-S-LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFR 243 (306)
Q Consensus 166 dD~~~G~~tl~v~~G~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~ 243 (306)
||+++|+||+|+++|++++.. . ..+......+...+.. ...++.|.+.. ......+.++++..+.+|+++|++.|+
T Consensus 186 ~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~-~~~~~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 186 VDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA-VGFGALWWIGL-AITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHH-HHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 999999999999999975543 2 2232333222222233 33466665433 344556667778888889999998865
Q ss_pred -HHhHHHHHHHHHHHHhc
Q psy13659 244 -FSLLHLPALMILLLINK 260 (306)
Q Consensus 244 -~s~~~~~~l~~~~l~~~ 260 (306)
.|.+.+.+++++++++.
T Consensus 264 ~~n~~ig~~~~~~~~~~~ 281 (284)
T PRK12888 264 TANGFVGIALFGFALLDL 281 (284)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 77777777888888765
No 17
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=7.6e-45 Score=339.01 Aligned_cols=243 Identities=20% Similarity=0.242 Sum_probs=202.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL 89 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l 89 (306)
.+++..+++.+++++++++++|++||++|||+|++|+|||+||+|||++|++||+.+..++.++++.+++ .+|+.++.+
T Consensus 41 ~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l 119 (289)
T PLN02809 41 LPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRIL 119 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 3678888899999999999999999999999999999999999999999999999999999999998885 579999888
Q ss_pred HHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHH-HHHHHHHhHhHHHHHhhhhcchhH
Q psy13659 90 GLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFL-LSAILFTWQFPHFNALSWNLRPDY 167 (306)
Q Consensus 90 ~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~edD 167 (306)
++.+++. ..+||++||++++ |++.|.. +++++++||.+++|+++ +..++ ++...++|+.+||+.+++||+|||
T Consensus 120 ~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~-~~~~~l~g~~av~g~~~---~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D 194 (289)
T PLN02809 120 GASSLLL-VFTYPLMKRFTFWPQAFLGLT-FNWGALLGWAAVKGSLD---PAVVLPLYASGVCWTLVYDTIYAHQDKEDD 194 (289)
T ss_pred HHHHHHH-HHHHhHHHhcCcchHHHHHHH-HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 8888877 8899999999999 6666666 57999999999999987 55554 888899999999999999999999
Q ss_pred HHcCCccccccCCchhHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHh
Q psy13659 168 SRAGYRMMAVTNPDLCRLTSLRYTVA-LLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSL 246 (306)
Q Consensus 168 ~~~G~~tl~v~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~ 246 (306)
+++|+||+|+++|++++..+..+... ...+..+++..+...++| +.. ......+.++++..+.+++++|++.|+.|.
T Consensus 195 ~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~-~~~-~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~ 272 (289)
T PLN02809 195 LKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYY-AGL-AAAAGHLAWQIQTVDLSSRADCNRKFVSNK 272 (289)
T ss_pred HhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 99999999999999865544333332 333333445555444444 333 333445666778888888999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy13659 247 LHLPALMILLLINK 260 (306)
Q Consensus 247 ~~~~~l~~~~l~~~ 260 (306)
+.+.++++++++++
T Consensus 273 ~~g~~~~~~~~~~~ 286 (289)
T PLN02809 273 WFGAIVFAGIVLGK 286 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 18
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-45 Score=344.74 Aligned_cols=243 Identities=23% Similarity=0.234 Sum_probs=203.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL 89 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l 89 (306)
.+++..++++.++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++.++.++|+.+++ ..|+.++.+
T Consensus 68 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l 146 (314)
T PRK12878 68 LLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIAL 146 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 5677778899999999999999999999999999999999999999999999999999999999998885 579999999
Q ss_pred HHHHHHHHHHhcCCCccchhHH-HHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHH
Q psy13659 90 GLFNMVLYTSVYTPMKRISIAN-TWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYS 168 (306)
Q Consensus 90 ~~~~~~ly~~~Ys~lKr~t~~~-~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~ 168 (306)
++.+++. .++||.+||++.++ .+.|.. +++++++||++++|+++ +.+++++...++|+.+|++.+++||+|||+
T Consensus 147 ~~~~~~~-~~~Y~~~KR~t~~~~~~~Gl~-~~~~~l~g~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 221 (314)
T PRK12878 147 GIASLAI-VAAYPFMKRITWWPQFFLGLA-FSWGALMGWAAHFGSLS---LAAVLLYAGSIAWTIGYDTIYAHQDKEDDA 221 (314)
T ss_pred HHHHHHH-HHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 9999888 89999999999994 555554 67999999999999998 788999999999999999999999999999
Q ss_pred HcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhH
Q psy13659 169 RAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLL 247 (306)
Q Consensus 169 ~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~ 247 (306)
++|+||+|+++|+++++ ....+.+....+++.+...+. +++|++..+..++.+ ...++..+.+++++|++.|+.|.+
T Consensus 222 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~F~~n~~ 299 (314)
T PRK12878 222 LIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGV-PLLALLGLLAAAAHL-AWQIARLDIDDPDQCLRLFKSNRD 299 (314)
T ss_pred HcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH-HHHHHHcccCChHHHHHHHHHhHH
Confidence 99999999999987544 445555555555555555554 677765544443332 222333445678889999999999
Q ss_pred HHHHHHHHHHHhc
Q psy13659 248 HLPALMILLLINK 260 (306)
Q Consensus 248 ~~~~l~~~~l~~~ 260 (306)
++.++++++++|.
T Consensus 300 ~~~ll~~~l~~~~ 312 (314)
T PRK12878 300 AGLLIFLGLVVGG 312 (314)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 19
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.3e-44 Score=333.70 Aligned_cols=245 Identities=15% Similarity=0.090 Sum_probs=193.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL 89 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l 89 (306)
.|+|..+++..++.+++|++||++|||+|||+|++|+||++||+|+|++|++||+.++..+.++++.+. ..+|+.++.+
T Consensus 43 ~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~-~~ln~l~~~l 121 (300)
T PRK12876 43 LGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLC-WLLNPLCFSL 121 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999987777777666 4689999999
Q ss_pred HHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCC-CCCcch----HHHHHHHHHHHhHhHHHHHhhhhc
Q psy13659 90 GLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGS-LLDGSG----GAFLLSAILFTWQFPHFNALSWNL 163 (306)
Q Consensus 90 ~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~-~~~~~~----~~~~l~~~~~~w~~~~~~~~a~~D 163 (306)
++.++++ ..+||++||+|++ |+++|... ++++++||.|++++ .+ + ..++..+..++|...+|+.|++||
T Consensus 122 ~~~~~~~-~~iY~~~KR~t~~~~~vLGl~~-~~~~l~~~~Av~~~~~~---~~l~~~~~lw~~~~~~~~~g~DiiYa~qD 196 (300)
T PRK12876 122 AVLSTLL-MIIYPYTKRVTFLCHWILGLVY-YLAILMNFFAIIETPLS---FSLFCMASLWGISFGMIIAANDIIYAIQD 196 (300)
T ss_pred HHHHHHH-HHHHHhHhcCCchhHHHHHHHH-HHHHHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999 5899999999999 56667765 68999999998877 33 3 233444455666679999999999
Q ss_pred chhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhccCChHHHHH
Q psy13659 164 RPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYF-TYLAYKFYKESDSSSSRK 240 (306)
Q Consensus 164 ~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 240 (306)
+|||++.|+||+|+++|++++... ..+.+....+...++..+...++|....+...... .++++++.++++++.|++
T Consensus 197 ~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (300)
T PRK12876 197 LEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQK 276 (300)
T ss_pred HhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 999999999999999999765322 23444444443445555544444543332222222 455556677778899999
Q ss_pred HHHHHhHHHHHHHHHHHHhc
Q psy13659 241 LFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 241 ~F~~s~~~~~~l~~~~l~~~ 260 (306)
.|+.|.+.+.+++++++..+
T Consensus 277 ~F~~N~~ig~~~~~~~~~~~ 296 (300)
T PRK12876 277 FFLGNIYLALSFFVNMIGLF 296 (300)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 20
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-43 Score=332.11 Aligned_cols=251 Identities=16% Similarity=0.106 Sum_probs=196.2
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++ ++.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||+.+...+.+.++.+. .+
T Consensus 37 g~~la~~~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~-~~ 115 (300)
T PRK13106 37 GAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASA-YL 115 (300)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HH
Confidence 55566 35678888889999999999999999999999999999999999999999999999999877777776666 46
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCc-----chHHHHHHHHHHHhHhHH
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDG-----SGGAFLLSAILFTWQFPH 155 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~-----~~~~~~l~~~~~~w~~~~ 155 (306)
+|+.+..++..+++. ...||++||++++ |+++|..+| +++++||.+++|....+ ...+++++...++|+.++
T Consensus 116 ln~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~~-~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~ 193 (300)
T PRK13106 116 VNRWALLLSPIVALI-AMSYPYMKRYTAFANYHLASIQG-LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGF 193 (300)
T ss_pred HhHHHHHHHHHHHHH-HHHHhHHhcCCcchHHHHHHHHH-HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 899998888887777 7789999999999 899999986 78999999988744200 034567777899999999
Q ss_pred HHHhhhhcchhHHHcCCccccccCCchhHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13659 156 FNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSL-RYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD 234 (306)
Q Consensus 156 ~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~ 234 (306)
|+.|++||+|||+++|+||+|+++|+++.+... .+..........++..+ .++.|.+..++... .+.++++..+.+
T Consensus 194 d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l~~~~~~~~~-lg~~y~~~~~~~~~-~l~~~~~~~~~~- 270 (300)
T PRK13106 194 DLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVLDLLGDLYYG-LGPIAIAATILHGL-IMAYAYYLASKK- 270 (300)
T ss_pred HHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHH-HHHHHHHHhCCc-
Confidence 999999999999999999999999955544332 33333333222223333 46666654443333 344445555433
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659 235 SSSSRKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 235 ~~~~~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
++|++.|+.|.+.+.++++++++|.
T Consensus 271 -~~~~~~F~~n~~ig~~~~~~~~~~~ 295 (300)
T PRK13106 271 -GDFGRAFYYNIYSSIVLGLGIIIDV 295 (300)
T ss_pred -hHHHHHHHHccHHHHHHHHHHHHHH
Confidence 8899999999999989999988875
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2.3e-43 Score=328.28 Aligned_cols=253 Identities=19% Similarity=0.153 Sum_probs=202.3
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|+++| ++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|+++|+.++.++.++++.++. .
T Consensus 24 g~~la~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~ 102 (282)
T TIGR01475 24 GALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASY-F 102 (282)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 45555 456888889999999999999999999999999999999999999999999999999999988877777764 6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
+|+.+..++..+.++ ...||++||++++ |+++|... ++++++||.+++|+++.. ..++++++..++|+.+|++.++
T Consensus 103 l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~~~g~~a~~g~~~~~-~~~~ll~~~~~~w~~~~~~i~~ 179 (282)
T TIGR01475 103 LNPLAFILSPLVLLV-LIIYPYTKRFTFLCHYVLGSTY-GLAPLAGWVAVIGTISFF-LVAWLLGIGVGFWIAGFDLIYA 179 (282)
T ss_pred HhHHHHHHHHHHHHH-HHHHhhHhccccccHHHHHHHH-HHHHHHHHHHHhCCccch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 899888888877777 7899999999999 66777775 589999999999886621 4567888899999999999999
Q ss_pred hhcchhHHHcCCccccccCCchh-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLC-RLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (306)
+||+|||+++|+||+|+++|+++ ++....+....+....++...+..++.|.+..++.+ .++..++++.+.+++++|+
T Consensus 180 ~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 258 (282)
T TIGR01475 180 IQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIG-LILAYEHYIVDPGDQSKIQ 258 (282)
T ss_pred HhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH-HHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999753 333333333333333343343445677766555544 6677788888888899999
Q ss_pred HHHHHHhHHHHH-HHHHHHHhc
Q psy13659 240 KLFRFSLLHLPA-LMILLLINK 260 (306)
Q Consensus 240 ~~F~~s~~~~~~-l~~~~l~~~ 260 (306)
+.|+.++.++.+ ++++++++.
T Consensus 259 ~~ff~~~~~l~~~~~~g~~~~~ 280 (282)
T TIGR01475 259 RAFFYANGFLSITFLIGVIIDV 280 (282)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 987777666654 556777654
No 22
>KOG1381|consensus
Probab=100.00 E-value=8.7e-43 Score=313.06 Aligned_cols=242 Identities=24% Similarity=0.276 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659 11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG 90 (306)
Q Consensus 11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~ 90 (306)
++..++.++.+|.++|+++||+|||.+|+|+|++++||+.|||+||++|+++|+.|-..+..+|+.++ .++|+++..++
T Consensus 100 p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg 178 (353)
T KOG1381|consen 100 PSIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALG 178 (353)
T ss_pred chhHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhc
Confidence 78889999999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659 91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR 169 (306)
Q Consensus 91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~ 169 (306)
..++.+ ++.||.+||+|+| |.++|.+++ ++.+.||.|..|+..+ ...+.+++...+|+..+|++|+|||++||.+
T Consensus 179 ~~sl~~-v~~ypl~kr~TY~pq~vLgltfn-wGAllGw~A~~g~~~~--s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk 254 (353)
T KOG1381|consen 179 ASSLAL-VITYPLMKRFTYWPQLVLGLTFN-WGALLGWCALKGSLSP--SAVLPLYLSGVCWTLIYDTIYAHQDKRDDVK 254 (353)
T ss_pred cccccc-EEEeehhhhcchhHHHHHhhhcc-hhhhhcchhhcCccCh--hhhhHHHHhhhhhhhhhhhhhhcccchhhhH
Confidence 999988 8899999999999 899999985 9999999999999883 3667888999999999999999999999999
Q ss_pred cCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc--cCChHHHHHHHHHHh
Q psy13659 170 AGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYK--ESDSSSSRKLFRFSL 246 (306)
Q Consensus 170 ~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~F~~s~ 246 (306)
+|+|+++.++|++|+.+...+.... ..++..++..|.+.++|..+ ++.-.+...++++ .+++++|+|.|+.|+
T Consensus 255 ~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~q~~pyy~~l----g~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ 330 (353)
T KOG1381|consen 255 IGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYYAAL----GAVAARLGSQIYKVDIDNPSDCWKKFKSNS 330 (353)
T ss_pred hcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccCCCchHHHHH----HHHHHHHHhheeeeecCChHHHHHHHHhcC
Confidence 9999999999999988766665554 34566677788777777543 2233345555554 678999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy13659 247 LHLPALMILLLINKK 261 (306)
Q Consensus 247 ~~~~~l~~~~l~~~~ 261 (306)
+.+.+++.++.+|..
T Consensus 331 ntGli~~~~i~~d~l 345 (353)
T KOG1381|consen 331 NTGLILFSGIVLDTL 345 (353)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999988764
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=6.3e-40 Score=304.80 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=213.5
Q ss_pred EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++. +.+++..+++.+++++++++++|++|||+|+|+|++|+ |+||+|||++|+++|+.++..+.++|+.+++ .
T Consensus 25 g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~ 101 (279)
T PRK09573 25 GYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRISLKEAKIFSITLFIVGLILSI-F 101 (279)
T ss_pred HHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCccCHHHHHHHHHHHHHHHHHHHH-H
Confidence 455553 35678888899999999999999999999999999998 6999999999999999999999999998885 5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+|+.++.+++.+++. ..+||. +||++++ |+++|.+.|.. ++.|+.+.++. ...++++...++|+..+++.+
T Consensus 102 l~~~~~~l~~~~~~~-~~~Ys~~lKr~~~~~~~~vg~~~G~~-~~~g~~~~~~~-----~~~~~l~~~~f~~~~~~~~~~ 174 (279)
T PRK09573 102 INIYAFLIALLNSIL-LYLYAKDLKKTGLIGNLIVAYLTGLS-FIFGGLAVFNV-----LRIIILFLCAFFSTWSREIVK 174 (279)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHH-HHHHHHHHccc-----hHHHHHHHHHHHHHHHHHHHh
Confidence 899999888888887 789996 9999998 99999999854 78888888763 456678888899999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
+++|+|+|+++|+||+|+++|+++.. ....+....+.++.+++..+..+++|.+.+++.++.+++.++++++.+++++|
T Consensus 175 ~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~ 254 (279)
T PRK09573 175 DIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLKNPSIEGA 254 (279)
T ss_pred hhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999986443 45556666666777777777678889888888889999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc
Q psy13659 239 RKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 239 ~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
++.++.+..++.+-.+.+++++
T Consensus 255 ~~~~~~~~~~m~~g~~~~~~~~ 276 (279)
T PRK09573 255 SKASKYLKIIMILGLIAFLIGS 276 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998887777777654
No 24
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-38 Score=297.75 Aligned_cols=242 Identities=24% Similarity=0.211 Sum_probs=203.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659 11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG 90 (306)
Q Consensus 11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~ 90 (306)
+++...++.+++++++++++|++||++|+|+||+|+||++||+|||++|+++|+.+..++.++++.+++ .+|+.++.++
T Consensus 44 ~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~ 122 (289)
T COG0382 44 PSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLS 122 (289)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 446788999999999999999999999999999999999999999999999999999999999999985 6899988888
Q ss_pred HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659 91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR 169 (306)
Q Consensus 91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~ 169 (306)
+.++++ ...|+.+||.+++ |.++|..++ +++++|+.+++++.. ...+++++..++|+..+++.++++|+|+|++
T Consensus 123 ~~~~~l-~~~Y~~~Kr~~~~~~~~lg~~~~-~~~~~g~~a~~~~~~---~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~ 197 (289)
T COG0382 123 LAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLP---LLAWLLLLAAILWTLGYDIIYAIQDIEGDRK 197 (289)
T ss_pred HHHHHH-HHHHHHhhcCCchHHHHHHHHHH-HHHHHHHHHHhCccc---hHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence 888888 8899779999999 899999986 899999999999877 7889999999999999999999999999999
Q ss_pred cCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhHH
Q psy13659 170 AGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248 (306)
Q Consensus 170 ~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~~ 248 (306)
.|+||+|+.+|++++. ....+....+.+..+++..+..++.|.....+... ....++...+.++++.+++.|+.+...
T Consensus 198 ~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (289)
T COG0382 198 AGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAAL-LLLYQILIVDVRDPPACFALFDVNLLL 276 (289)
T ss_pred cCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHhcccChHHHHHHHHHhhHH
Confidence 9999999999997654 33333444455556666666555455544443333 333444455555889999999999999
Q ss_pred HHHHHHHHHHh
Q psy13659 249 LPALMILLLIN 259 (306)
Q Consensus 249 ~~~l~~~~l~~ 259 (306)
+.++++++.++
T Consensus 277 ~~~~~~~~~~~ 287 (289)
T COG0382 277 GLLLFIGLILA 287 (289)
T ss_pred HHHHHHHHHHh
Confidence 99999887764
No 25
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.6e-38 Score=293.52 Aligned_cols=244 Identities=23% Similarity=0.246 Sum_probs=202.0
Q ss_pred EEEecCCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++.+. .+...+++++++++++++++|++|||+|+|+|++|+ |+||+|+|++|+++|+.++.++.++|+.+++ .
T Consensus 26 g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~--~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~-~ 102 (276)
T PRK12882 26 GAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINR--PDRPIPSGAVSPRGALAFSILLFAAGVALAF-L 102 (276)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC--CCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 45556433 344456788899999999999999999999999876 7999999999999999999999999999885 5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+|+.++.+++.++++ .+.|+. +||++.+ |+.+|...|.. ++.|+.+.+.... ...+++++..++|+..+++.+
T Consensus 103 l~~~~~~~~~~~~~~-~~~Yt~~lK~~~~~g~~~vg~~~g~~-~~~g~~~~~~~~~---~~~~~l~~~~fl~~~~~~~~~ 177 (276)
T PRK12882 103 LPPLCLAIALFNSLL-LVLYAETLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGL---LALLVLFALAALATLAREIIK 177 (276)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHh
Confidence 899998888888887 779998 8999988 99999988754 6677766554333 556778888899999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
++||+|||+++|+||+|+++|+++.. .+..+....+..+.+++..+..++.|.+.+++.++.+++.+++..+.+++++|
T Consensus 178 ~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~ 257 (276)
T PRK12882 178 DVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLVAPADLVMLAAAYRSLKKTDPTAS 257 (276)
T ss_pred hhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999986443 44445555555666666666678888888877888888889999998899999
Q ss_pred HHHHHHHhHHHHHHHH
Q psy13659 239 RKLFRFSLLHLPALMI 254 (306)
Q Consensus 239 ~~~F~~s~~~~~~l~~ 254 (306)
++.|+.+.+.+.+.+.
T Consensus 258 ~~~f~~~~~~g~~~~~ 273 (276)
T PRK12882 258 QKLLKYGMFLALAAFI 273 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 26
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3e-37 Score=286.50 Aligned_cols=237 Identities=21% Similarity=0.221 Sum_probs=190.2
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy13659 3 GYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGV 82 (306)
Q Consensus 3 G~~la~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l 82 (306)
|++++.+..++..+++.+++++++++++|++|||+|+|+|++| | ++||+|+|++|+++|+.++.++.++++.++. .+
T Consensus 26 g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r-~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~-~l 102 (279)
T PRK12884 26 GAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-R-PDRPIPSGRISRREALLLAILLFILGLIAAY-LI 102 (279)
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-C-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4555544444556788889999999999999999999999999 6 7999999999999999999999999998885 57
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 83 NGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 83 ~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
|+.+..+++++++. .+.||. +||++++ |+++|...| +|++.|+.++++.. ...++++...++|+.+|++.++
T Consensus 103 ~~~~~~~~~~~~~~-~~~Ys~~lK~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~ 176 (279)
T PRK12884 103 SPLAFLVVILVSVL-GILYNWKLKEYGLIGNLYVAFLTG-MTFIFGGIAVGELN----EAVILLAAMAFLMTLGREIMKD 176 (279)
T ss_pred hHHHHHHHHHHHHH-HHHHHHhhccccchhHHHHHHHHH-HHHHHHHHHhCCCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888776 889998 8999987 788888764 88899998876543 3577888889999999999999
Q ss_pred hhcchhHHHcCCccccccCCchhHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRLT-SLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (306)
++|+|||+++|+||+|+++|+++... ...+......++.++++.+..+++|.+...+.+..+++...++++.+++++++
T Consensus 177 ~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (279)
T PRK12884 177 IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSAYSLLRSQDRETIR 256 (279)
T ss_pred hhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 99999999999999999999975443 33333334444455566676778888777666777777778899888888877
Q ss_pred HHHHHHhHHH
Q psy13659 240 KLFRFSLLHL 249 (306)
Q Consensus 240 ~~F~~s~~~~ 249 (306)
+. +....+.
T Consensus 257 ~~-~~~~~~~ 265 (279)
T PRK12884 257 KV-RKITLTA 265 (279)
T ss_pred HH-HHHHHHH
Confidence 76 3333333
No 27
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.9e-35 Score=274.06 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=181.1
Q ss_pred EEEec---CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCC-CC--------CCCCcccCCCCCHHHHHHHHHHH
Q psy13659 3 GYAMA---PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQM-SR--------TKNRVLVRGVLSPLHALGFALAS 70 (306)
Q Consensus 3 G~~la---~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~-~R--------t~~RPL~sG~Is~~~A~~~~~~l 70 (306)
|+++| .+.+++..++++++++.++.+++|++|||+|+|+|++| +| |++||+|+|++|+++|+.+++++
T Consensus 27 g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l 106 (297)
T PRK12871 27 GLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILL 106 (297)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHH
Confidence 44555 35678876665666777777889999999999999864 33 47999999999999999999999
Q ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHhcCCCccchhH--HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHH
Q psy13659 71 SAAGTAMLYFGVNG---LTAALGLFNMVLYTSVYTPMKRISIA--NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLS 145 (306)
Q Consensus 71 ~~~gl~l~~~~l~~---~~~~l~~~~~~ly~~~Ys~lKr~t~~--~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~ 145 (306)
.++|+.++....++ ..+.+++.+.++ ...|+..||.+.+ +.++|...++++++.||. ++|+++ ...++++
T Consensus 107 ~~i~~~l~~~l~~~~~~~~~~l~~~~~~~-~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~-~~g~~~---~~~~ll~ 181 (297)
T PRK12871 107 AAVTSALILTLPYPNSLYVFVIMLYSYGI-EAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYL-CYGQPD---MTALLYM 181 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccHHHHHHHHHHHHHHHHHHH-HhCCCc---HHHHHHH
Confidence 99999887532222 333444455555 5677777776444 445676556788888875 578887 7888888
Q ss_pred HHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy13659 146 AILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTY 224 (306)
Q Consensus 146 ~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 224 (306)
...++|+.+|++.++++|+|||+++|+||+|+++|++..+ .+..+...... ..++...+. ++.+........+.+..
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l-~~~~~~~~~-g~~~~~~~~~~~~~~~~ 259 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL-AAIFFLREL-GPIALYGFLAGFVLLAG 259 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH-HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987433 33333333322 223334443 32322222233455677
Q ss_pred HHHHHhccCChHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659 225 LAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINK 260 (306)
Q Consensus 225 ~a~~~~~~~~~~~~~~~F~~s~~~~~~l~~~~l~~~ 260 (306)
.+.+.+|.++++.|.|.|+.=..|..+-....++|.
T Consensus 260 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 295 (297)
T PRK12871 260 ANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF 295 (297)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788889999999999999987777776666666653
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=3.5e-34 Score=265.94 Aligned_cols=239 Identities=21% Similarity=0.212 Sum_probs=188.5
Q ss_pred EEEecCCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659 3 GYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG 81 (306)
Q Consensus 3 G~~la~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~ 81 (306)
|++++.+. +++..+++.+++.++.++++|++|||+|+|+|++|+ |+||+|+|++|+++|..++.++.++|+.+++ .
T Consensus 25 G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~-~ 101 (277)
T PRK12883 25 GSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGAMSRKAALYYSLLLFAVGLALAY-L 101 (277)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCC--CCCCCCCCccCHHHHHHHHHHHHHHHHHHHH-H
Confidence 45555333 456667778889999999999999999999999875 7999999999999999999999999998875 5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+|+.++.+++.+.+. ...||. +||.+.+ |+++|.+.|..| +.|+.++ ++++ +..++. ...++|+..+.+.+
T Consensus 102 ~~~~~~~~~~~~~~~-~~~Y~~~~k~~~~lg~~~vg~~~g~~~-~~g~~a~-~~~~---~~~~~~-~~~fl~~~~~~~~~ 174 (277)
T PRK12883 102 INIEAFLFALGAYVL-MFLYAWKLKPLPFIGNVVVALLTGATP-IYGAIAV-GRIG---LAGYLA-ICAFLVNVAREIMK 174 (277)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhcccCCcchhhHHHHHHHHHHH-HHHHHHh-cccc---HHHHHH-HHHHHHHHHHHHHh
Confidence 899988888888766 889999 9999876 999999998776 6777776 6666 555443 44788888899999
Q ss_pred hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (306)
+++|+|+|+++|+||+|+++|+++.+ ....+....+..+.+++..+. ++.|... ...++.+++.+.++++.++++++
T Consensus 175 ~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~~-~~~~~~~l~~~~~~~~~~~~~~~ 252 (277)
T PRK12883 175 DIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLPI-IIVDAIILYAAYLVLRNPDRETA 252 (277)
T ss_pred hhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHH-HHHHHHHHHHHHHHHhCcchhHH
Confidence 99999999999999999999986443 445555555555566666665 5656544 34678888899999987777665
Q ss_pred ---HHHHHHHhHHHHHHH
Q psy13659 239 ---RKLFRFSLLHLPALM 253 (306)
Q Consensus 239 ---~~~F~~s~~~~~~l~ 253 (306)
++.|+.+...+.+-+
T Consensus 253 ~~~~~~~~~~~~~~~~~~ 270 (277)
T PRK12883 253 HKGQKLLKIAIFLAVISF 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888887655443
No 29
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2.1e-32 Score=258.41 Aligned_cols=239 Identities=15% Similarity=0.091 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy13659 16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMV 95 (306)
Q Consensus 16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ 95 (306)
++..++++.++++++|++|||+|+|.|++|+ ++||++||++|+++|+.++.++..+++.+++ .+|+.+..+++.+++
T Consensus 67 ~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~ 143 (314)
T PRK07566 67 LAGMLLAGPLLCGTSQTLNDYFDREVDAINE--PYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLF 143 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccccCC--CCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHH
Confidence 3446677888999999999999999999997 5899999999999999999999999998885 589988888888888
Q ss_pred HHHHhcC----CCccchhH-HHHHHHHHhhhhhhhhHhhccC-CCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659 96 LYTSVYT----PMKRISIA-NTWVGSVVGAIPPLMGWAACTG-SLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR 169 (306)
Q Consensus 96 ly~~~Ys----~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g-~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~ 169 (306)
. .+.|| .+||++++ |+++|..+|.+|++.|+.+.++ ..+ +..++++...++|....+..++++|+|+|++
T Consensus 144 ~-~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~ 219 (314)
T PRK07566 144 L-AWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPS---WPIVILALLYSLGAHGIMTLNDFKSVEGDRQ 219 (314)
T ss_pred H-HHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 8 88999 38999987 9999999988999999998874 555 7777777788888888889999999999999
Q ss_pred cCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHhHH
Q psy13659 170 AGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE-SDSSSSRKLFRFSLLH 248 (306)
Q Consensus 170 ~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~F~~s~~~ 248 (306)
+|+||+|+++|+++++...........+...+.........|........++....+.+..++ ++++.+.+.|..+.+.
T Consensus 220 aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (314)
T PRK07566 220 LGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYV 299 (314)
T ss_pred cCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHH
Confidence 999999999999754433222222221222122111112223222223345555666666543 3456777888888888
Q ss_pred HHHHHHHHHHhcc
Q psy13659 249 LPALMILLLINKK 261 (306)
Q Consensus 249 ~~~l~~~~l~~~~ 261 (306)
..+++.++++.+.
T Consensus 300 ~~ll~~~~~~~~~ 312 (314)
T PRK07566 300 LGMLVTALAIRHL 312 (314)
T ss_pred HHHHHHHHHhccc
Confidence 8888888877654
No 30
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=3e-32 Score=261.99 Aligned_cols=224 Identities=15% Similarity=0.141 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHH
Q psy13659 16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG------VNGLTAAL 89 (306)
Q Consensus 16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~------l~~~~~~l 89 (306)
++++++++.++++++|++|||+|+|+|++|+ ++||+|+|++|+++++.++.++.++++.++++. .|+..+.+
T Consensus 125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l 202 (375)
T PLN00012 125 IVCMLMSGPFLTGYTQTINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL 202 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCeecHhhhccCC--CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4677788999999999999999999999998 689999999999999998877777777666532 25666777
Q ss_pred HHHHHHHHHHhcC----CCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcc
Q psy13659 90 GLFNMVLYTSVYT----PMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLR 164 (306)
Q Consensus 90 ~~~~~~ly~~~Ys----~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~ 164 (306)
+++++++ .++|| .+||++++ |+.+|..++++|+.+|+ +++|.++ +..+++++..++|....++.++++|+
T Consensus 203 ~l~gi~l-~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g~~s---~~~illal~~~l~~lai~ivnd~~Di 277 (375)
T PLN00012 203 ALGGSLL-SYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFGTLT---PDVVVLTLLYSIAGLGIAIVNDFKSI 277 (375)
T ss_pred HHHHHHH-hhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcCCCC---HHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 8888888 88998 38999998 99999999888888887 6678888 78888888889999999999999999
Q ss_pred hhHHHcCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy13659 165 PDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244 (306)
Q Consensus 165 edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~ 244 (306)
|+|+++|+||+||++|+++.++...+.+.+..++.+++..+..+++|....+.+.+++++.+.+.+.+ |+++....|+.
T Consensus 278 e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~-~p~~~~~~~~~ 356 (375)
T PLN00012 278 EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLP-DPVKNDVKYQA 356 (375)
T ss_pred hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 99999999999999998755544445555555566666666556666555556677777877775543 77777777776
Q ss_pred HhH
Q psy13659 245 SLL 247 (306)
Q Consensus 245 s~~ 247 (306)
+..
T Consensus 357 ~a~ 359 (375)
T PLN00012 357 SAQ 359 (375)
T ss_pred HHH
Confidence 654
No 31
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=5.4e-29 Score=232.82 Aligned_cols=227 Identities=18% Similarity=0.108 Sum_probs=171.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN 83 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~ 83 (306)
+.+++..+++.+++.+++++++|++|||+|+ |+|++++|+++||+++|++|++++..++..+.+++++++.+ ..+
T Consensus 33 ~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~ 112 (293)
T PRK06080 33 GSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSG 112 (293)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888999999999999999999999998 79999999999999999999999999998888877766542 236
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 84 GLTAALGLFNMVLYTSVYTPMK----RISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 84 ~~~~~l~~~~~~ly~~~Ys~lK----r~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+..+.+++++++. .+.||..| ++..-|+.+|..+|...+..+++..++.++ +..+++++..++|+..++..+
T Consensus 113 ~~~~~~~~~~~~~-~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~n 188 (293)
T PRK06080 113 WWLLLLGLLCIAA-AILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVD---SAVFLPALPCGLLIGAVLLAN 188 (293)
T ss_pred HHHHHHHHHHHHH-hhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHhc
Confidence 7777788888777 78999732 333338999999998888888999888888 788888999999999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HhccCChH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYK-FYKESDSS 236 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~-~~~~~~~~ 236 (306)
+++|+|+|+++|+||+|+++|+++.+.. ..+.+.. .......+.+..++++++. ++..+....+.+ +.++++++
T Consensus 189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ll~--ll~~p~~~~~~~~~~~~~~~~ 265 (293)
T PRK06080 189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY-LCIVLLALLGLASPWGLLF--LLSLPLAVKAARPVLRKQKPE 265 (293)
T ss_pred CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999754422 2222222 2223334445556666532 234555555544 45444444
Q ss_pred HHHHHH
Q psy13659 237 SSRKLF 242 (306)
Q Consensus 237 ~~~~~F 242 (306)
+-....
T Consensus 266 ~~~~~~ 271 (293)
T PRK06080 266 TLIPAL 271 (293)
T ss_pred HHHHHH
Confidence 333333
No 32
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.97 E-value=1.1e-28 Score=232.37 Aligned_cols=162 Identities=17% Similarity=0.116 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHH
Q psy13659 17 LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGV------NGLTAALG 90 (306)
Q Consensus 17 ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l------~~~~~~l~ 90 (306)
+.+++++.++++++|++|||+|+|.|++|+| +||+++|++|++++..++..+..+++.++.+.. |+.++.++
T Consensus 57 l~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~--~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~ 134 (306)
T TIGR02056 57 LCMLLSGPCLTGYTQTINDFYDRDIDAINEP--YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA 134 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhccCCC--CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 5556788999999999999999999999985 899999999999999999999999988875421 35667788
Q ss_pred HHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659 91 LFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP 165 (306)
Q Consensus 91 ~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e 165 (306)
+++++. .+.||. +||++++ ++.+|..++.+|+..|+ +++|+++ +..++++...++|....++.++++|+|
T Consensus 135 ~~~~~~-~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-a~~g~~~---~~~~l~~~~~~l~~~~i~~~n~~~D~e 209 (306)
T TIGR02056 135 LFGSFI-AFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH-ALFGELN---PDIAVLTLIYSIAGLGIAIVNDFKSVE 209 (306)
T ss_pred HHHHHH-HHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-HHhCCCc---HHHHHHHHHHHHHHHHHHHHHHccChH
Confidence 888888 889993 8999877 88899988878877776 5578888 778888888999999999999999999
Q ss_pred hHHHcCCccccccCCchhHH
Q psy13659 166 DYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 166 dD~~~G~~tl~v~~G~~~~~ 185 (306)
+|+++|+||+|+++|+++.+
T Consensus 210 ~D~~~G~~Tlpv~lG~~~a~ 229 (306)
T TIGR02056 210 GDRALGLQSLPVAFGIETAA 229 (306)
T ss_pred HHHHcCCcCcchhcChHHHH
Confidence 99999999999999987544
No 33
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.97 E-value=1.3e-28 Score=229.28 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=140.7
Q ss_pred CCHHHHHH-HHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH-HH
Q psy13659 11 FEWSSFLI-CSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLT-AA 88 (306)
Q Consensus 11 ~~~~~~ll-~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~-~~ 88 (306)
.++...++ +++++.+.++++|++|||+|+|+|++|+ ++||+++|++|++++..++.++..+++.++.+ ++... ..
T Consensus 34 ~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~-l~~~~~~~ 110 (283)
T TIGR01476 34 EHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSGIISLREVRWNWLVLTVAGLLVALV-LGNWLIVL 110 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45654444 6679999999999999999999999998 68999999999999999999999999988864 44444 66
Q ss_pred HHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhc
Q psy13659 89 LGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNL 163 (306)
Q Consensus 89 l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D 163 (306)
+++.+++. .+.||. +||++++ ++.+|..++..|+..|+.+. ++.+ +..++.++...+|.......++++|
T Consensus 111 l~~~~~~~-~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~i~~~nd~~D 185 (283)
T TIGR01476 111 FTVVGIVL-AVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF-APLT---WQSVVVALIYSLGAHGIMTLNDFKS 185 (283)
T ss_pred HHHHHHHH-hheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777 889995 8999887 88999888888888887765 4566 6677777788888888888999999
Q ss_pred chhHHHcCCccccccCCchhHH
Q psy13659 164 RPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 164 ~edD~~~G~~tl~v~~G~~~~~ 185 (306)
+|+|+++|+||+|+++|+++.+
T Consensus 186 ~~~D~~~G~~Tl~v~lG~~~a~ 207 (283)
T TIGR01476 186 VEGDRQLGLRSLPVMIGVKRAA 207 (283)
T ss_pred hhhHHHcCCcCcceEEcHHHHH
Confidence 9999999999999999997544
No 34
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.97 E-value=1.9e-28 Score=232.57 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHH-------HH-HHHHH
Q psy13659 20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNG-------LT-AALGL 91 (306)
Q Consensus 20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~-------~~-~~l~~ 91 (306)
++++.+.++++|++|||+|+|+|++|+|| ||+|+|++|+++|+.++.++..+++.++.+ ++. .. +..++
T Consensus 56 ~~~~~L~~~a~~~iND~~D~~~D~~n~rt--Rpl~~G~is~~~al~~~~~l~~la~~lg~~-L~~~~~~~~~~~il~~~~ 132 (331)
T PRK12392 56 LMYGPLGTGFSQSVNDYFDLELDRVNEPT--RPIPSGRLSEKEALWNSIIVLLLAIGLGVW-LGLHIGGERGMVIISSIL 132 (331)
T ss_pred HHHHHHHHHHHhHHhcceeecccccCCCC--CCCCcCCcCHHHHHHHHHHHHHHHHHHHHH-HHhccccchhHHHHHHHH
Confidence 33445566789999999999999999986 999999999999999999999999887753 332 12 23345
Q ss_pred HHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchh
Q psy13659 92 FNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPD 166 (306)
Q Consensus 92 ~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~ed 166 (306)
+++++ .++||. +||.... +..+|..++ +.+.+++.+..++++ +..++++...++|+...++.++++|+|+
T Consensus 133 ~~l~l-~~~YS~~P~~lKr~~~~g~~~vGl~~~-~~~~~~~~a~~g~~~---~~~~~l~~~~~l~~~~~~~i~d~~D~eg 207 (331)
T PRK12392 133 AGLFV-AYIYSAPPLKLKKNILTSAPAVGFSYG-FITFLSANALFSDIR---PEVVWLAGLNFFMAIALIIMNDFKSVEG 207 (331)
T ss_pred HHHHH-hhhhcCCchhhhccchhHHHHHHHHHH-HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 56666 789963 7998776 778899987 445666777778877 7777888889999999999999999999
Q ss_pred HHHcCCccccccCCchhHHH-HHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13659 167 YSRAGYRMMAVTNPDLCRLT-SLRYT-VALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES 233 (306)
Q Consensus 167 D~~~G~~tl~v~~G~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~ 233 (306)
|++.|+||+|+++|++.+.. ...+. +........++..+....+|. .. +..+...+.+.+++|+|
T Consensus 208 D~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~q~~l~r~p 274 (331)
T PRK12392 208 DKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYF-IL-VGLVLNIVIQIQLYRDP 274 (331)
T ss_pred HHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HH-HHHHHHHHHHHHHHhCh
Confidence 99999999999999975443 33332 222333333444454333332 22 22345566677777655
No 35
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=6.3e-27 Score=219.43 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCC--CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---h
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRT--KNRVLVRGVLSPLHALGFALASSAAGTAMLYF---G 81 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt--~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~ 81 (306)
+.++|..+++++++.+++++++|++|||+| +|.|++ +|| ++||+++|++|++|+..++.++..+++.++.. .
T Consensus 35 ~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~ 113 (296)
T PRK05951 35 RSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLD 113 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999 777776 677 78999999999999999999988877765432 2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHH
Q psy13659 82 VNGLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFN 157 (306)
Q Consensus 82 l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~ 157 (306)
.++....+++++++. .+.||. +|++..-++.++..+|...++..++..++.++ +..+.......+|+.....
T Consensus 114 ~~~~~l~l~~~~~~~-~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~---~~~~~~sl~~~l~~~~il~ 189 (296)
T PRK05951 114 RGIGAVTLALLGVFL-WTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLS---SPNLLAGVPLGLLMALVLL 189 (296)
T ss_pred ccHHHHHHHHHHHHH-HHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHHHHHH
Confidence 366677788888887 889963 56665559999999998888999999999888 7788888888888877788
Q ss_pred HhhhhcchhHHHcCCccccccCCchhH
Q psy13659 158 ALSWNLRPDYSRAGYRMMAVTNPDLCR 184 (306)
Q Consensus 158 ~~a~~D~edD~~~G~~tl~v~~G~~~~ 184 (306)
.++++|+|+|+++|+||+|+++|++++
T Consensus 190 ~n~~~D~e~D~~~G~~Tlav~lG~~~a 216 (296)
T PRK05951 190 SNNLRDIEDDERKGIPTLAVIFGRRGA 216 (296)
T ss_pred HCCCccchhHHHCCCeeeeeeEcHhhH
Confidence 899999999999999999999999765
No 36
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.96 E-value=1.2e-27 Score=217.48 Aligned_cols=171 Identities=26% Similarity=0.285 Sum_probs=143.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAA 88 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~ 88 (306)
+..++..+....++.++++.++|.+||+.|+|.|+.|+|+|+||+++|++|++++..++..+..+++.+++ ..++....
T Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~-~~~~~~~~ 96 (257)
T PF01040_consen 18 GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLAL-LLGPWFLL 96 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHH-hcCchhHH
Confidence 45678888888888899999999999999999999999999999999999999999999999999998874 57888877
Q ss_pred HHHHHHHHHHHhcC---CCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcc
Q psy13659 89 LGLFNMVLYTSVYT---PMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLR 164 (306)
Q Consensus 89 l~~~~~~ly~~~Ys---~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~ 164 (306)
+.++..+. .+.|+ .+||++.+ +++++...+ .++..|+.+.+++++ ...+.+....+++.......++++|+
T Consensus 97 ~~~~~~~~-~~~Ys~~~~lk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~ 171 (257)
T PF01040_consen 97 ILLLGFLL-GLLYSPPLRLKRRPLWGELVVALVFG-LLILLGAYAAGGDPP---PPPFLLAIFFFLLIFAIMFFNDIRDI 171 (257)
T ss_pred HHHHHHHH-HHHHhhhhhhcceeccchhhHHHhhh-HhhhhhhhhcCCccc---HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 77777777 68999 59999997 788888865 778888888887765 55666665555665555555589999
Q ss_pred hhHHHcCCccccccCCchhHH
Q psy13659 165 PDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 165 edD~~~G~~tl~v~~G~~~~~ 185 (306)
|+|+++|+||+|+++|++...
T Consensus 172 ~~D~~~g~~Tl~v~~G~~~~~ 192 (257)
T PF01040_consen 172 EGDRKAGRRTLPVLLGEKKAR 192 (257)
T ss_pred HHHHHcCCcchHHHHHHHHHH
Confidence 999999999999999986443
No 37
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.96 E-value=1.4e-26 Score=218.06 Aligned_cols=213 Identities=12% Similarity=0.066 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHH----hhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659 16 FLICSLGTGLVSSAANA----VNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL 91 (306)
Q Consensus 16 ~ll~~l~~~l~~~a~~~----iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~ 91 (306)
.+...+++++++.++|+ +|||+|+|+|++|+ |+||++||++|+++|..+..++.++|+.+++ ..|+..+.+++
T Consensus 51 ~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink--p~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~ 127 (308)
T PRK12887 51 NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK--PHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVG 127 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 56777788899999999 99999999999997 7999999999999999999999999999985 68998888888
Q ss_pred HHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhh----Hhh---ccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 92 FNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMG----WAA---CTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 92 ~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G----~~a---~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
++.++ ...||. +||++.+ |..+....| ..+..| +.+ .+++++ ...+++++..++|+...+..+
T Consensus 128 ~~~~l-g~~Ys~pP~rlKr~~~~~~~~i~~~~g-~i~~~g~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~l~~ 202 (308)
T PRK12887 128 ISLLI-GTAYSLPPIRLKRFPLLAALCIFTVRG-VIVNLGLFLHFQWLLGGSVLIP---PTVWLLTLFVLVFTFAIAIFK 202 (308)
T ss_pred HHHHH-HHHHcCCchhhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 88888 899995 9999998 565554444 222222 221 222444 566778888899999999999
Q ss_pred hhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCh
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVV--SAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDS 235 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~ 235 (306)
+++|+|+||+.|+||+|+++|+++.... ..+.+..... ..+....+ .+..+.+.+....+..++++.+..+.+++
T Consensus 203 di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
T PRK12887 203 DIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPT-VNPAFLIVSHLILLALLWWRSQRVDLQDK 281 (308)
T ss_pred hccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 9999999999999999999998754422 1111111111 11112222 23445444444445555666666665555
Q ss_pred HH
Q psy13659 236 SS 237 (306)
Q Consensus 236 ~~ 237 (306)
++
T Consensus 282 ~~ 283 (308)
T PRK12887 282 QA 283 (308)
T ss_pred hH
Confidence 33
No 38
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=215.30 Aligned_cols=240 Identities=16% Similarity=0.130 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659 12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL 91 (306)
Q Consensus 12 ~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~ 91 (306)
++.......+++++.++++|++|||+|+|.|++|+| +||.+|++...+.++.+..+...++..+.....|+.++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~ 111 (285)
T PRK12872 34 GLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI 111 (285)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333466777889999999999999999999999985 788886555555555444444444444432234788888888
Q ss_pred HHHHHHHHhcCC-----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659 92 FNMVLYTSVYTP-----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP 165 (306)
Q Consensus 92 ~~~~ly~~~Ys~-----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e 165 (306)
++.+. .+.||. +||.+.+ |+.+|...|..+++.++++.++.++ ...+..+...+++.......++++|+|
T Consensus 112 ~~~~~-~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~fl~~~~~~~~~d~~D~e 187 (285)
T PRK12872 112 IPLIL-GILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIF---SLLLLYAVFIFLKSFIREIVFDIKDIE 187 (285)
T ss_pred HHHHH-HHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 88877 889985 5776767 8999999998998989888877666 566666667777777777788999999
Q ss_pred hHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy13659 166 DYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244 (306)
Q Consensus 166 dD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~ 244 (306)
+|+++|+||+|+++|+++.+ .............+.+...+..++++. ..++...+..+..+++.+.+++++..+....
T Consensus 188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T PRK12872 188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLL-VLLLLLAYVLYYIIKLFAADDKKDLLYLSLL 266 (285)
T ss_pred hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999986433 333333333344445555665444443 3444456666677888887777777666665
Q ss_pred HhHHHHHHHHHHHH
Q psy13659 245 SLLHLPALMILLLI 258 (306)
Q Consensus 245 s~~~~~~l~~~~l~ 258 (306)
...+...-.++++.
T Consensus 267 ~~~~~~~g~~~~~~ 280 (285)
T PRK12872 267 DKEHMLLGLISMLL 280 (285)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555544444444
No 39
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=6e-26 Score=210.14 Aligned_cols=220 Identities=11% Similarity=-0.059 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659 12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL 91 (306)
Q Consensus 12 ~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~ 91 (306)
.+.+.+++++.+++..+++|++|||+|+|+||+|+ |+||+|||++|+++|..++..+.++++.+.. .+ ...+
T Consensus 44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~--P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~-----l~-~i~i 115 (299)
T PRK13592 44 IGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF--PHRALPSGRVKKKDLAIALSFIVAVSVLLNV-----LF-MNNV 115 (299)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC--CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH-----HH-HHHH
Confidence 34567777788889999999999999999999998 7999999999999999999999766666553 22 2222
Q ss_pred HHHHHHHHhc-----CC-CccchhH-HHHHHHHHhhhhhhhh---------HhhccCCCCCcchHHHHHHHHHHHhHhHH
Q psy13659 92 FNMVLYTSVY-----TP-MKRISIA-NTWVGSVVGAIPPLMG---------WAACTGSLLDGSGGAFLLSAILFTWQFPH 155 (306)
Q Consensus 92 ~~~~ly~~~Y-----s~-lKr~t~~-~~~vg~~~ga~~~l~G---------~~a~~g~~~~~~~~~~~l~~~~~~w~~~~ 155 (306)
.+.+. .++| +. +||.+.. |+.++...| .+++.| ..+. |..... ...+++++..|+-+...
T Consensus 116 ~~~~i-~~lY~~lm~a~~~K~~~l~gNl~Va~ltg-~~f~~g~~~~~~~fg~~~~-g~~~~~-~~~~~l~l~afl~~l~r 191 (299)
T PRK13592 116 GWFLF-LYIYGTLMSFWFFKRDKIQNSLPLALVTH-NPVMMILNLYTISFVCYKY-NLPLLS-LPTVLLAFTMYFPSLIW 191 (299)
T ss_pred HHHHH-HHHHHHHHHHHHHcccCCCcchhhhhhcc-chhhhchhhhhhhhhhhhc-ccchhh-HHHHHHHHHHHHHHHHH
Confidence 23333 3455 66 8998888 999999987 555333 2222 222100 11356667777778899
Q ss_pred HHHhhhhcchhHHHcCCccccccCCchhH-HHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13659 156 FNALSWNLRPDYSRAGYRMMAVTNPDLCR-LTSLRYTVALLVVSAAGPL-LDVTNVWFALESIPLNAYFTYLAYKFYKES 233 (306)
Q Consensus 156 ~~~~a~~D~edD~~~G~~tl~v~~G~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~ 233 (306)
+...+++| |||++ |.+|+|+++|.+.+ +......+..+..+.+++. .|..++ +..++..+++++.++++.|+|
T Consensus 192 EI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~~~lk~p 266 (299)
T PRK13592 192 EVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFEQFIKSP 266 (299)
T ss_pred HHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 78885 59999999997543 3334444444556777776 665565 333455778888889999988
Q ss_pred Ch----HHHHHHHHHHhHH
Q psy13659 234 DS----SSSRKLFRFSLLH 248 (306)
Q Consensus 234 ~~----~~~~~~F~~s~~~ 248 (306)
++ ++..|..+.+...
T Consensus 267 ~~~~~~~~~~~~~ki~~~l 285 (299)
T PRK13592 267 TRFNIRERVERYTYITETT 285 (299)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 66 6777777766643
No 40
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=3e-25 Score=206.12 Aligned_cols=223 Identities=14% Similarity=0.071 Sum_probs=149.2
Q ss_pred EEEecCCCCCH--HHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHH----HH
Q psy13659 3 GYAMAPAPFEW--SSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG----TA 76 (306)
Q Consensus 3 G~~la~g~~~~--~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~g----l~ 76 (306)
|+..+.+.+|| ..+.+.+......+...|.+|||+|+|+|++|+|| ||+++|++|++++..+...+...+ +.
T Consensus 34 G~~~~g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~~G~is~~~~~~~~~~~~~~~~~~~l~ 111 (292)
T PRK13595 34 GVWLTGHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQGARLSPGEVRPLLRAVLLLNAPFLLY 111 (292)
T ss_pred HHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCCcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34344345776 55666677778888899999999999999999974 888899999999988766555443 33
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHh
Q psy13659 77 MLYFGVNGLTAALGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151 (306)
Q Consensus 77 l~~~~l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w 151 (306)
+. +..|+.+..+.+.+.++ .+.||. +|+++.+ ++.. ..+| .|...| .++.|... .+......++|
T Consensus 112 la-~~l~~~~~~l~~v~~~l-~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~~~-~~~~g~~~-----~~~~l~a~~~w 181 (292)
T PRK13595 112 LA-LLLPPAATLLLLLYAAL-FVGYSLPPLRFKARPFLDGLSN-AAYA-LPLALP-ALALGAPV-----PWPPLLALMAW 181 (292)
T ss_pred HH-HHHhHHHHHHHHHHHHH-HHHHccCccchhcCcchhHHHH-HHHH-HHHHHH-HHHcCCcc-----hHHHHHHHHHH
Confidence 44 35788887777777777 889983 7777777 4544 3343 454454 44555433 22333566789
Q ss_pred HhHHHHHhhhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13659 152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKF 229 (306)
Q Consensus 152 ~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~ 229 (306)
....+..+++||+|+||+.|+||+|+++|+++..+. ..+.+..+.+ ... ++...++ +.+.....+.++
T Consensus 182 ~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~----~~~---~~~~~~~---~~~~~~~~~~~~ 251 (292)
T PRK13595 182 SVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL----WPV---SRLTALA---LWLICGGMALAL 251 (292)
T ss_pred HHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH----HHh---cchHHHH---HHHHHHHHHHHH
Confidence 999999999999999999999999999998643322 1222222211 111 1222221 122333445567
Q ss_pred hccCChHHHHHHHHHHhH
Q psy13659 230 YKESDSSSSRKLFRFSLL 247 (306)
Q Consensus 230 ~~~~~~~~~~~~F~~s~~ 247 (306)
+++++++++.|..+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (292)
T PRK13595 252 WRRPTPETAHRLYPLSIV 269 (292)
T ss_pred hcCCCHHHHhccchHHHH
Confidence 788888888776665444
No 41
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.93 E-value=6.5e-24 Score=200.72 Aligned_cols=244 Identities=16% Similarity=0.098 Sum_probs=174.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN 83 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~ 83 (306)
+.+++..+++++++.++.++++|++|||+|. +.|++..++++||+++|.+|++++...+..+..++++++.+ ..+
T Consensus 34 ~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g 113 (317)
T PRK13387 34 KIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS 113 (317)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679988999999999999999999999994 66665555678999999999999999999999888875442 457
Q ss_pred HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHH----------------
Q psy13659 84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFL---------------- 143 (306)
Q Consensus 84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~---------------- 143 (306)
+....+++++++. .+.||. +||+..-++.++..+|...+.++++..++..+ +..+.
T Consensus 114 ~~~l~igl~g~~~-~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~---~~~~~~~~~~~~~~~~~~~~~ 189 (317)
T PRK13387 114 WLLLVIGLICFAI-GILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTIT---IESLLFQGEMFTIQGNLIAII 189 (317)
T ss_pred HHHHHHHHHHHHH-hhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHhcccchhhcchhHHHH
Confidence 7777888888888 889985 78888669999999998888888888888876 44433
Q ss_pred ----HHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHH
Q psy13659 144 ----LSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPL 218 (306)
Q Consensus 144 ----l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~ 218 (306)
.++...+.+..-...++++|+|+|+++|.||+|+++|++.+++........ ..........|..++++++. .+
T Consensus 190 ~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~ll~--ll 267 (317)
T PRK13387 190 AIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWALLS--FL 267 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HH
Confidence 555666666566778899999999999999999999997554322111111 11223344556555555432 34
Q ss_pred HHHHHHHHHHHh-cc-CChHHHHHHH----HHHhHHHHHHHHHHHH
Q psy13659 219 NAYFTYLAYKFY-KE-SDSSSSRKLF----RFSLLHLPALMILLLI 258 (306)
Q Consensus 219 ~~~~~~~a~~~~-~~-~~~~~~~~~F----~~s~~~~~~l~~~~l~ 258 (306)
..+......|.+ +. +++++.+... +.+..+..++.++.++
T Consensus 268 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll 313 (317)
T PRK13387 268 TLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLI 313 (317)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665544 33 4444444333 3344444444454444
No 42
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.93 E-value=2.5e-23 Score=193.91 Aligned_cols=232 Identities=17% Similarity=0.063 Sum_probs=165.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh---hH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG---VN 83 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~---l~ 83 (306)
+.++|..+++++++.+++++++|.+|||+|. +.|+..+.+++|++++|.+|++++...+..+.+++++++.+. .+
T Consensus 23 ~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~ 102 (284)
T TIGR00751 23 HAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAA 102 (284)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999995 567755556799999999999999999988888777665432 23
Q ss_pred H------HHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHh
Q psy13659 84 G------LTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQF 153 (306)
Q Consensus 84 ~------~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~ 153 (306)
+ ....++.++++. .+.||. +|++..-++.++..+|.++++.++++++++++ +..++..+...+.+.
T Consensus 103 ~~~~~~~~~l~lg~~~~~~-~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~---~~~ll~sl~~g~l~~ 178 (284)
T TIGR00751 103 PNLSDLFWFIALGALCIAA-AITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVD---WVGILPAVATGLLAC 178 (284)
T ss_pred cchhhhHHHHHHHHHHHHH-hHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Confidence 3 334677777777 789985 56666669999999999999999999999998 777777776777777
Q ss_pred HHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-c
Q psy13659 154 PHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLV-VSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFY-K 231 (306)
Q Consensus 154 ~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~-~ 231 (306)
.....++++|+|+|+++|+||+|+++|+++++..........- ..+.....+..+++. +. .++.++......|.. +
T Consensus 179 ~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~-ll-~ll~lPl~~~~~~~~~~ 256 (284)
T TIGR00751 179 AVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWC-VL-FLLAAPLLLKAAGPVRS 256 (284)
T ss_pred HHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HH-HHHHHHHHHHHHHHHHh
Confidence 7777889999999999999999999999765432211111111 111112223333322 22 233455555555544 3
Q ss_pred cCChHHHHHHHHHHh
Q psy13659 232 ESDSSSSRKLFRFSL 246 (306)
Q Consensus 232 ~~~~~~~~~~F~~s~ 246 (306)
.+++++-....+.+.
T Consensus 257 ~~~~~~l~~~l~~t~ 271 (284)
T TIGR00751 257 GRGPRELRPVLRDTG 271 (284)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555444333
No 43
>PLN02878 homogentisate phytyltransferase
Probab=99.91 E-value=1.4e-22 Score=186.39 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy13659 14 SSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFN 93 (306)
Q Consensus 14 ~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~ 93 (306)
..++...++..++...-.-+|||+|+|+||.|+ |+||||||++|+++|+.+...+.++|+.+++ .+|+.+...++..
T Consensus 23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~-~~g~~~l~~al~~ 99 (280)
T PLN02878 23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGW-IVGSWPLFWALFV 99 (280)
T ss_pred HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHH
Confidence 445667778888888888999999999999999 7999999999999999999999999999985 5777655544443
Q ss_pred H-HHHHHhcCC------CccchhHHHHHHHHHhhhhhhhhHhhc------cCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659 94 M-VLYTSVYTP------MKRISIANTWVGSVVGAIPPLMGWAAC------TGSLLDGSGGAFLLSAILFTWQFPHFNALS 160 (306)
Q Consensus 94 ~-~ly~~~Ys~------lKr~t~~~~~vg~~~ga~~~l~G~~a~------~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a 160 (306)
. ++ ...|+. +||............++.-+-.||++. ++....+ ...+.....+.+......+.++
T Consensus 100 ~~~l-g~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~-~~~~~~~~f~~~f~~~i~i~KD 177 (280)
T PLN02878 100 SFVL-GTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFT-RPLIFATAFMCFFSVVIALFKD 177 (280)
T ss_pred HHHH-HHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccc-hhHHHHHHHHHHHHHHHHHHhh
Confidence 3 44 678883 577666521111111112222233322 2211100 2223222233334445668889
Q ss_pred hhcchhHHHcCCccccccCCchhHH
Q psy13659 161 WNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 161 ~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
.+|+|+||+.|+||+|+++|++...
T Consensus 178 i~DieGD~~~Gi~Tlpv~lG~~~~~ 202 (280)
T PLN02878 178 IPDVEGDRIFGIRSFSVRLGQKRVF 202 (280)
T ss_pred CcCchhHHHCCCceechhhChHHHH
Confidence 9999999999999999999986433
No 44
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=2.6e-22 Score=186.55 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=121.9
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHH-HHhhcccccCcCCCCCCCCCCcccCCCCCHHHH----HHHHHHHHH-HHHH
Q psy13659 3 GYAMAPAPFEWSSFLICSLGTGLVSSAA-NAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHA----LGFALASSA-AGTA 76 (306)
Q Consensus 3 G~~la~g~~~~~~~ll~~l~~~l~~~a~-~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A----~~~~~~l~~-~gl~ 76 (306)
|+++|.+.++| .+++..+.....+..+ |.+|||+|+|.|+.|+||..|. |.+|++|. +.+..+... .++.
T Consensus 23 g~~la~~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~---g~i~~~~~~~~~~~~~~~~~~~~~l~ 98 (282)
T PRK13105 23 AYLLAGGEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE---GAVLDRAMHRTTLWASVVTTVPFLVV 98 (282)
T ss_pred HHHHHCCCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC---CccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555666 4444444333333333 3559999999999999987764 88999987 333333333 2333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHh
Q psy13659 77 MLYFGVNGLTAALGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151 (306)
Q Consensus 77 l~~~~l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w 151 (306)
+. ...|+.++.++.++++. .+.||. +|++... ++.....++ .+.+.|.+..++.++ +..+++....++|
T Consensus 99 l~-~~~~~~~~~l~~~ai~~-~~~YS~~p~rlk~~gl~d~~t~~~~f~-~~~v~G~~~~~~~~~---~~~~l~~~~~~~~ 172 (282)
T PRK13105 99 LL-AVGSWASGLVLAVSVFA-VVAYSAPGLRFKERPFLDSLTSSTHFV-SPALYGLVLAGAPFT---AALWAVLAAFFLW 172 (282)
T ss_pred HH-HHhhHHHHHHHHHHHHH-HHHhcCCCccccccchHHHHHHHHHHH-HHHHHHHHHhhcccc---HHHHHHHHHHHHH
Confidence 32 23478888888888888 889996 6666776 443444433 235555555577777 6778888889999
Q ss_pred HhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 152 ~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
....+..+++||.|+||++|+||+|+++|+++..
T Consensus 173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~ 206 (282)
T PRK13105 173 GMASHAFGAVQDVVADREAGIASIATVLGARRTV 206 (282)
T ss_pred HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHH
Confidence 9999999999999999999999999999987544
No 45
>PRK08238 hypothetical protein; Validated
Probab=99.90 E-value=6.4e-22 Score=196.29 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13659 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLF 92 (306)
Q Consensus 13 ~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~ 92 (306)
+...++++++++++++++|++||++|+|+||+|+||++||+|||++|+++|+.++.+++++|+.+++ .+|+.++.+ .+
T Consensus 225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~-~~ 302 (479)
T PRK08238 225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLV-LL 302 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HH
Confidence 4466788889999999999999999999999999999999999999999999999999999998885 578855444 44
Q ss_pred HHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHH
Q psy13659 93 NMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFT 150 (306)
Q Consensus 93 ~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~ 150 (306)
+.+.+.++||. +||++++ ++++|+.+ ++++++|+.+.+ ++ +..|++++.+++
T Consensus 303 ~~~~~~~~Ys~~lKr~~~~~~~~la~~~-~lr~~~G~~a~~--~~---~s~wll~~~~~~ 356 (479)
T PRK08238 303 AYLALTLAYSLRLKRKVLVDVLTLAALY-TLRIIAGAAAIG--VA---LSFWLLAFSMFF 356 (479)
T ss_pred HHHHHHHHhhHHhcCCccccchHHHHHH-HHHHHHHHHHhc--cC---HHHHHHHHHHHH
Confidence 55555899998 9999999 66777776 699999998865 45 667776554433
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.89 E-value=8.1e-21 Score=175.98 Aligned_cols=242 Identities=19% Similarity=0.120 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCC--CCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hh
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDS--QMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GV 82 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~--~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l 82 (306)
.+++...++++++..+++.+.|..|||+| +..|. .++++.++-+.+.+++++.++.+.+.+...+.+++.. ..
T Consensus 40 ~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s 119 (303)
T COG1575 40 SFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS 119 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999 46665 6667789999999999999998888887766655542 34
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-Cccchh---HHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHH
Q psy13659 83 NGLTAALGLFNMVLYTSVYTP-MKRISI---ANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNA 158 (306)
Q Consensus 83 ~~~~~~l~~~~~~ly~~~Ys~-lKr~t~---~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~ 158 (306)
+|..+.+|+++++. .+.||. .|+..+ -++.+|.++|.+.++++++..+++++ +..++.++.+.+-+..-..+
T Consensus 120 ~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~---~~~ll~slp~gil~~~Il~a 195 (303)
T COG1575 120 DWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLS---WAILLPSLPVGILIANILLA 195 (303)
T ss_pred hhHHHHHHHHHHHh-eeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHh
Confidence 66667788888888 889998 566644 38999999999999999999999999 88888888777777777788
Q ss_pred hhhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hccCCh
Q psy13659 159 LSWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKF-YKESDS 235 (306)
Q Consensus 159 ~a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~-~~~~~~ 235 (306)
++++|+|+|+|+|.+|+||+.|++..+.. ..+..+.+. .+....++...+++++. ++.++......|. .+++.+
T Consensus 196 NNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~-~~~~~i~~~~~~~~ll~--ll~~Pl~ir~~r~v~~~~~~ 272 (303)
T COG1575 196 NNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA-IVIFVILGLFPVWGLLF--LLALPLAIRAARPVRQNQVP 272 (303)
T ss_pred cccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHH--HHHHHHHHHHHHHHHhccCc
Confidence 89999999999999999999999754422 222222221 22223445445555332 2345666666554 444433
Q ss_pred ----HHHHHHHHHHhHHHHHHHHHHHH
Q psy13659 236 ----SSSRKLFRFSLLHLPALMILLLI 258 (306)
Q Consensus 236 ----~~~~~~F~~s~~~~~~l~~~~l~ 258 (306)
..++..-+.+...-.++++++++
T Consensus 273 ~~~~p~l~~~~~~~~~~~~l~~~~i~~ 299 (303)
T COG1575 273 ATLVPMLKNTVKANLLWNLLLAVGILL 299 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655
No 47
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.89 E-value=1.1e-20 Score=177.71 Aligned_cols=170 Identities=15% Similarity=-0.011 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN 83 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~ 83 (306)
+.++|..+++++++..+.++++|.+|||+|. ..|+..+ +..+++..++++....+..+.++++.++.+ ..+
T Consensus 43 ~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g 118 (304)
T PRK07419 43 GVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF----HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD 118 (304)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc----cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999995 5888522 234456667999988888888877766543 246
Q ss_pred HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+....++.++++. .+.||. +|++..-++.++..+|.+++++++++.+|+++ +..+...+...+.+..-...+
T Consensus 119 ~~~l~ig~~g~~~-~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~---~~~~~~sl~~gll~~~IL~~N 194 (304)
T PRK07419 119 WTVLGLVLLCCFL-GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWS---LIPLAASIILGLATSLILFCS 194 (304)
T ss_pred HHHHHHHHHHHHH-hheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHc
Confidence 7777788888888 889974 78888779999999999999999999999988 777887777777776777788
Q ss_pred hhhcchhHHHcCCccccccCCchhHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRLT 186 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~~ 186 (306)
+++|+|+|+++|+||+|+++|++.+++
T Consensus 195 n~rD~e~D~~~Gk~TL~v~lG~~~a~~ 221 (304)
T PRK07419 195 HFHQVEDDLAAGKRSPIVRLGTKRGAQ 221 (304)
T ss_pred CCcchhhHHHcCCcceeeeechHhHHH
Confidence 999999999999999999999976553
No 48
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=5e-21 Score=179.07 Aligned_cols=120 Identities=23% Similarity=0.174 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13659 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLF 92 (306)
Q Consensus 13 ~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~ 92 (306)
+...++.+++++++++++|++||++|+|+||+|+|||+||+|||++|+++|+.++.++.++|+.+++ .+|+.++.+.+
T Consensus 45 ~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~- 122 (295)
T PRK12324 45 LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLL- 122 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Confidence 4456777888889999999999999999999999999999999999999999999999999998885 57888776654
Q ss_pred HHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCC
Q psy13659 93 NMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLL 135 (306)
Q Consensus 93 ~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~ 135 (306)
+.+.+.++||. +||++.. ++.++..+ .++++.|..+.+.+++
T Consensus 123 ~~~~~~~~Ys~~lK~~~~~d~l~va~~~-~lr~~~G~~a~~~~~s 166 (295)
T PRK12324 123 VYLVLNLAYSFKLKHQPVLDVFCIASGF-VLRAIAGGVAIGVPLS 166 (295)
T ss_pred HHHHHHHHhhHHhcCCchhhHHHHHHHH-HHHHHHHHHHhCCCcc
Confidence 44445899999 8999998 56778776 4899999988875543
No 49
>PLN02922 prenyltransferase
Probab=99.88 E-value=2.3e-20 Score=176.26 Aligned_cols=169 Identities=14% Similarity=0.007 Sum_probs=136.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh----h
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG----V 82 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~----l 82 (306)
+.++|..+++++++.++.++++|.+|||+| +..|+.++.++.|+.- |+++....+..+.++++...++. .
T Consensus 46 g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~----s~~~v~~~~~~~~~la~~g~~ll~~~~~ 121 (315)
T PLN02922 46 GLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG----SRRGVLAAAIGCLALGAAGLVWASLVAG 121 (315)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc----CHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999 5788865433445533 99999888888887777543322 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccC----------CCCCcchHHHHHHHHH
Q psy13659 83 NGLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTG----------SLLDGSGGAFLLSAIL 148 (306)
Q Consensus 83 ~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g----------~~~~~~~~~~~l~~~~ 148 (306)
++....+++++++. .+.||. +|++..-++.++..+|.+++.+.++++++ .++ +..++..+..
T Consensus 122 ~~~~l~iG~~g~~~-~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~---~~~~l~slp~ 197 (315)
T PLN02922 122 NIRVILLLAAAILC-GYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLT---PTVLSASVLV 197 (315)
T ss_pred ChHHHHHHHHHHHH-HHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhccccccccccccccc---HHHHHHHHHH
Confidence 56677788888888 899984 78877779999999998888888888877 234 6667778888
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
.+++..--..++++|+|+|+++|+||+||++|++.++
T Consensus 198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~ 234 (315)
T PLN02922 198 GLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGS 234 (315)
T ss_pred HHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHH
Confidence 8888777788899999999999999999999997554
No 50
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.88 E-value=1.9e-20 Score=174.62 Aligned_cols=170 Identities=12% Similarity=-0.047 Sum_probs=138.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN 83 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~ 83 (306)
+.+++..+++++++..+.++++|.+|||+| ++.|+.+..++.|.. .|+++....+..+..+++.++.+ ..+
T Consensus 30 ~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~----~~~~~v~~~~~~~~~ia~~~g~~L~~~~~ 105 (285)
T TIGR02235 30 GVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT----GSRSLVFWLANFFLLIGLVGIAALSWRWQ 105 (285)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999 466885433344444 45788887777777777665542 245
Q ss_pred HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
+....++.++++. .+.||. +|++..-++.++..+|.++++.+++..+++++ +..++..+...+.+..-...+
T Consensus 106 ~~~l~lg~~g~~~-~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~---~~~~l~sl~~gl~~~~iL~~N 181 (285)
T TIGR02235 106 ITVLALVGLCCFL-GYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFS---LIPWKASILVGLATTLILFCS 181 (285)
T ss_pred HHHHHHHHHHHHH-HHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCc---HHHHHHHHHHHHHHHHHHHhc
Confidence 6667788888888 889984 78877779999999999999999999999998 788888888878877777888
Q ss_pred hhhcchhHHHcCCccccccCCchhHHH
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRLT 186 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~~ 186 (306)
+++|+|+|+++|.||+||++|++.+.+
T Consensus 182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~ 208 (285)
T TIGR02235 182 HFHQVEDDLAHGKRSPVVRLGTKLAAK 208 (285)
T ss_pred CCccchhHHHcCCcceeheecHHhHHH
Confidence 999999999999999999999976543
No 51
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.88 E-value=1.4e-20 Score=175.15 Aligned_cols=144 Identities=19% Similarity=0.143 Sum_probs=100.6
Q ss_pred HHhhcccccCcCCCCCCCC-CCccc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC---C-C
Q psy13659 31 NAVNQYHEVPFDSQMSRTK-NRVLV-RGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT---P-M 104 (306)
Q Consensus 31 ~~iND~~D~~iD~~~~Rt~-~RPL~-sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ly~~~Ys---~-l 104 (306)
|.+|||+|+|.||+|+||+ +||++ +|+.+...+.. ....+++.+.. ..++....+.+.. +.+.+.|| . +
T Consensus 62 y~iND~~D~D~Dr~~prk~~~r~~~~s~~~~~~~~~~---l~~~l~l~l~~-~~~~~~~~~ll~~-i~~~~~YS~pP~rl 136 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKDREREVRYRGDRRVLVAVA---LSGALALAFLL-VLPPAAWPALLAF-LVLSVEYSAPPLRF 136 (282)
T ss_pred hcchhhhhhhccccCCCccCCCCccHHHHHHHHHHHH---HHHHHHHHHHH-HhhHHHHHHHHHH-HHHHHHHcCCCccc
Confidence 4479999999999999988 68888 54443333322 12333343332 2344333233333 44488998 3 8
Q ss_pred ccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhH
Q psy13659 105 KRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCR 184 (306)
Q Consensus 105 Kr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~ 184 (306)
|+++..+......+ .+|++++|++++|+++ +. .+++..++|+.+.+..+++||+|+|+++|+||+|+++|+++.
T Consensus 137 k~~p~~~~~~~g~~-~~~~~~~y~~~tg~~~---~~--~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a 210 (282)
T PRK12875 137 KTTPVLDSLSNGLY-ILPGVAAYALVSGSLP---PL--LAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRT 210 (282)
T ss_pred hhccHHHHHHHHHH-HHHHHHHHHHHcCCCc---HH--HHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhH
Confidence 88887776553333 4888999999999876 33 345556899999888899999999999999999999998744
Q ss_pred H
Q psy13659 185 L 185 (306)
Q Consensus 185 ~ 185 (306)
+
T Consensus 211 ~ 211 (282)
T PRK12875 211 Y 211 (282)
T ss_pred H
Confidence 3
No 52
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.85 E-value=8.6e-20 Score=170.48 Aligned_cols=159 Identities=15% Similarity=0.048 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy13659 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTA 87 (306)
Q Consensus 8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~ 87 (306)
+.++++... +.+.+...++|++|||+|+|+|+.|+ |+||.+ |++.++.++.+..++|+.+++ ..|+..
T Consensus 56 g~~~~~~~~----~~~~L~~~s~~~iNd~~D~eiD~IN~--P~r~~~----s~~~a~~ls~la~llGl~La~-~~g~~l- 123 (307)
T PRK13591 56 GLQSSILTC----IAGGLIIYSVYTLDRALDSEEDAVNR--SELIGS----NKKIGLLVSLLAFLLGTYILA-MDGMLL- 123 (307)
T ss_pred CCCcchHHH----HHHHHHHHHHHHHhhhccchhhhccC--cccccc----CHHHHHHHHHHHHHHHHHHHH-HHhHHH-
Confidence 344565433 34557789999999999999999997 699997 899999999999999999885 567643
Q ss_pred HHHHHHHHHHHHhcCC----------CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHH
Q psy13659 88 ALGLFNMVLYTSVYTP----------MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHF 156 (306)
Q Consensus 88 ~l~~~~~~ly~~~Ys~----------lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~ 156 (306)
+++++.+. .+.|+. +|+.+.+ |+.+|..+|.+.+...... +++. ......++....-.....
T Consensus 124 -l~ll~~l~-g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~~----~~~~~i~l~~~~~l~~~~ 196 (307)
T PRK13591 124 -LAFLPFIT-GYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGSL----IPVGLIFLFFGVKLFINS 196 (307)
T ss_pred -HHHHHHHH-HHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhhH----HHHHHHHHHHHHHHHHHH
Confidence 55667766 789994 3455566 9999999986443211111 1111 111111111111112344
Q ss_pred HHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 157 NALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 157 ~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
..++++|+|+|+++|+||+|+++|++..+
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~ 225 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTR 225 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHH
Confidence 67899999999999999999999986443
No 53
>KOG4581|consensus
Probab=99.49 E-value=1.1e-14 Score=129.25 Aligned_cols=233 Identities=18% Similarity=0.185 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH--HhhHHHH
Q psy13659 11 FEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLY--FGVNGLT 86 (306)
Q Consensus 11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~--~~l~~~~ 86 (306)
+++..+.++.++....++++|..|.|+| .++|++.. .+|.++...+.+.+...++.++..+|+.... ..++|.-
T Consensus 96 ~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kka--ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~k 173 (359)
T KOG4581|consen 96 FRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA--DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAK 173 (359)
T ss_pred hhHHHHHHHHhhheeeecccchhhhhhhhhhccccccc--cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhh
Confidence 6677788888999999999999999999 59998865 6999999999999999999998888775432 1244432
Q ss_pred ----HHHHHHHHHHHHHhcCC---CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659 87 ----AALGLFNMVLYTSVYTP---MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159 (306)
Q Consensus 87 ----~~l~~~~~~ly~~~Ys~---lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~ 159 (306)
..+.+-++.. +++|+. +|.+..-++++-..+|.+.++..++..+|++. +.++..++.+-+-+-...-++
T Consensus 174 lehlaliyfggls~-sflytggigfkyialgdliili~fgpiavlfaf~~q~g~l~---~~~l~yaiplalnteailhsn 249 (359)
T KOG4581|consen 174 LEHLALIYFGGLSG-SFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTGHLA---IFPLGYAIPLALNTEAILHSN 249 (359)
T ss_pred hhhhhhhhccCccc-ceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcCcee---EEeehheeeeccchHHHhccC
Confidence 2233444545 779997 68777778878788899999999999999987 544444444444443333355
Q ss_pred hhhcchhHHHcCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhcc-----
Q psy13659 160 SWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLD-VTNVWFALESIPLNAYFTYLAYKFYKE----- 232 (306)
Q Consensus 160 a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~a~~~~~~----- 232 (306)
+.+|.|.||++|+-|++++.|+.... ..|.+.+ .+.++. .+++ ..+.++++- ++.+++.+..-|-+++
T Consensus 250 ntrd~dndr~agivtlailig~t~s~--ily~~llf~py~lf-~i~~~~~si~~~lp--lltip~afqiek~frneqa~~ 324 (359)
T KOG4581|consen 250 NTRDADNDREAGIVTLAILIGPTASH--ILYAMLLFAPYLLF-FIFALHCSISFALP--LLTIPMAFQIEKQFRNEQAFH 324 (359)
T ss_pred CCcccccccccCeEEEEEeecccHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhH--HhhchhHHhHHHHhhhHhhhh
Confidence 78999999999999999999986432 3454433 333222 2222 233334322 2244555544333332
Q ss_pred -CChHHHHHHHHHHhHHHHHHHH
Q psy13659 233 -SDSSSSRKLFRFSLLHLPALMI 254 (306)
Q Consensus 233 -~~~~~~~~~F~~s~~~~~~l~~ 254 (306)
-.+++++-.|..++.|...+.+
T Consensus 325 ~lp~qtakln~~~gi~yv~~~~~ 347 (359)
T KOG4581|consen 325 KLPQQTAKLNFFFGIFYVFACCC 347 (359)
T ss_pred hcchhhhhHHHHHHHHHHHHHHH
Confidence 2457888899999887765443
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=95.27 E-value=0.97 Score=41.85 Aligned_cols=43 Identities=7% Similarity=-0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 142 FLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 142 ~~l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
.+.++..++.+..-...|++.|+|.|++. .+.-|+..|+-+.+
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~ 82 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRR 82 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHH
Confidence 33444455555555667899999999998 68889988974333
No 55
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=94.95 E-value=0.15 Score=47.85 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13659 20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTS 99 (306)
Q Consensus 20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ly~~ 99 (306)
.++..+.+.+-..+||+.|+|.|++..+ |-+|. ++-.+.+..++..+..++..+....-+...+.+.+...+.+.
T Consensus 171 ~~a~~l~~~~~~~in~i~Die~D~~aGi---~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~- 245 (282)
T PRK12875 171 VAGGWLWAMGMHTFSAIPDIEPDRAAGI---RTTAT-VLGERRTYAYCAACWLLAAAAFAAVDLRLGALLLVYPALVLA- 245 (282)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHcCC---ccchh-hccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445677777789999999999998652 33332 445666666666665555554432223333333333333322
Q ss_pred hcCC---CccchhH----HHHHHHHH
Q psy13659 100 VYTP---MKRISIA----NTWVGSVV 118 (306)
Q Consensus 100 ~Ys~---lKr~t~~----~~~vg~~~ 118 (306)
+..- ..|..+| |+.+|.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (282)
T PRK12875 246 ILRAGIAVDRAYWWFPAINTVVGMLL 271 (282)
T ss_pred HhccccchhhhhHHHHHHHHHHHHHH
Confidence 2222 3343333 77777764
No 56
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=94.67 E-value=1.7 Score=40.43 Aligned_cols=50 Identities=4% Similarity=-0.148 Sum_probs=33.0
Q ss_pred HHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659 144 LSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 144 l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
..+..++.+..-...|++.|+|.|++.. +.-|+.-|+-+.+....+...+
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l 91 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL 91 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence 3344555555666678999999999866 8889888884444444343333
No 57
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=92.61 E-value=2.1 Score=39.68 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=31.3
Q ss_pred HHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659 145 SAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
.+..++-+..-...|++.|+|-|+... |.-|+.-|+-+.+....+....
T Consensus 44 ~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 44 FAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHH
Confidence 333444444555667899999999755 8889999985444443333333
No 58
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=92.22 E-value=6.8 Score=36.51 Aligned_cols=44 Identities=7% Similarity=-0.093 Sum_probs=29.7
Q ss_pred HHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659 147 ILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY 190 (306)
Q Consensus 147 ~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~ 190 (306)
..++....-...|++.|+|-|+++-. |.-|+.-|+-+++....+
T Consensus 55 ~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~ 99 (289)
T COG0382 55 AFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLL 99 (289)
T ss_pred HHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHH
Confidence 33444444455678999999999876 788999998554443333
No 59
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=91.76 E-value=6.3 Score=36.48 Aligned_cols=39 Identities=8% Similarity=-0.090 Sum_probs=26.6
Q ss_pred hHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHH
Q psy13659 153 FPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTV 192 (306)
Q Consensus 153 ~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~ 192 (306)
..-...|++.|+|.|+..+ +.-|+.-|+-+.+....+..
T Consensus 51 ~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~ 89 (277)
T PRK12883 51 SGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSL 89 (277)
T ss_pred HHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHH
Confidence 3445567899999999765 88899999754443333333
No 60
>PRK13592 ubiA prenyltransferase; Provisional
Probab=91.31 E-value=7.2 Score=36.94 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=31.0
Q ss_pred HHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659 145 SAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
++..++-+..-...++++|+|.| +...+.-|+--|+-+++.+..++..+
T Consensus 52 ~~~vf~~~~~gniiNDy~D~EID-rIN~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 52 VFTVFGFWMILRIADDFKDYETD-RRLFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHHHHhHHHHHHhhHHHh-hhcCCCCCCCcCCCCHHHHHHHHHHH
Confidence 33444444444566789999999 55678888888884444444444333
No 61
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=91.22 E-value=6.3 Score=36.70 Aligned_cols=46 Identities=9% Similarity=-0.129 Sum_probs=29.4
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
++-+..-...|++.|+|-|++... |.-|+.-|+-+.+....+.+..
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l 101 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFIL 101 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHH
Confidence 444444456678999999987554 5788888985444444444433
No 62
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=90.76 E-value=15 Score=34.70 Aligned_cols=38 Identities=3% Similarity=-0.194 Sum_probs=25.3
Q ss_pred HHHHHhhhhcchhHHHc-CCccccccCCchhHHHHHHHH
Q psy13659 154 PHFNALSWNLRPDYSRA-GYRMMAVTNPDLCRLTSLRYT 191 (306)
Q Consensus 154 ~~~~~~a~~D~edD~~~-G~~tl~v~~G~~~~~~~~~~~ 191 (306)
.-...|++.|+|.||++ ..|.-|+.-|+-+.+....++
T Consensus 61 a~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~ 99 (295)
T PRK12324 61 AVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILA 99 (295)
T ss_pred HHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHH
Confidence 33456789999999997 455678888874444333333
No 63
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.84 E-value=1.2 Score=41.51 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCC
Q psy13659 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59 (306)
Q Consensus 8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is 59 (306)
.+.+++...+ +.++.++.+.+-..+|++.|+|.|++..+ |.=|+.-|+-+
T Consensus 155 ~g~~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~ 204 (281)
T TIGR01474 155 TGDLSTAAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDNT 204 (281)
T ss_pred cCCCcHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhhh
Confidence 3556654433 45567777888889999999999998764 45677677533
No 64
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=89.74 E-value=11 Score=35.52 Aligned_cols=36 Identities=3% Similarity=-0.229 Sum_probs=25.1
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
.+-+..-...+++.|+|.|++.+ |.-|+.-|+-+.+
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~ 99 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEP 99 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHH
Confidence 44455556667889999998776 5678888874333
No 65
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.16 E-value=3.3 Score=38.36 Aligned_cols=37 Identities=19% Similarity=0.046 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
.+..++....-+++||.-|+|-|+++.+ +.=|..-|+
T Consensus 167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~lG~ 203 (285)
T PRK12872 167 AVFIFLKSFIREIVFDIKDIEGDRKSGL-KTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHcCC-cccchhcch
Confidence 3444555666778999999999999765 345655565
No 66
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=88.32 E-value=1.9 Score=40.54 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
.|.+++..+++ .+..++.+.+=..+|++.|+|.|++... |.=|+.-|+
T Consensus 162 ~g~~~~~~~~l-~~~~~~w~~~~~~~~a~~D~~~D~~~Gi-~slpv~~G~ 209 (291)
T PRK12874 162 LGEIPLWSVFL-ALGVMFWVAGFDLLYSLQDMEFDKKRGL-HSIPSKFGE 209 (291)
T ss_pred cCCCcHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHcCC-CcccHHhhh
Confidence 45566544433 4566677778889999999999988754 345655555
No 67
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=88.26 E-value=4.7 Score=36.07 Aligned_cols=35 Identities=6% Similarity=-0.043 Sum_probs=23.4
Q ss_pred HHhHhHHHHHhhhhcchhHHHc-CCccccccCCchh
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRA-GYRMMAVTNPDLC 183 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~-G~~tl~v~~G~~~ 183 (306)
++.+..-...++..|.|.|+.. +.+..|+..|+-+
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 3444444455788999999996 4566677777644
No 68
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=87.31 E-value=20 Score=33.24 Aligned_cols=48 Identities=6% Similarity=-0.391 Sum_probs=31.0
Q ss_pred HHHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHH
Q psy13659 145 SAILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTV 192 (306)
Q Consensus 145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~ 192 (306)
++..++-+..-...|++.|+|-|++... +.-|+.-|+-+.+....+++
T Consensus 42 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (279)
T PRK12869 42 LIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS 90 (279)
T ss_pred HHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence 3334444555566678999999998665 67888888854444433333
No 69
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=87.22 E-value=8 Score=35.86 Aligned_cols=42 Identities=5% Similarity=-0.242 Sum_probs=27.6
Q ss_pred HHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHH
Q psy13659 146 AILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTS 187 (306)
Q Consensus 146 ~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~ 187 (306)
+..++-+..-...|++.|+|-|++... |.-|+.-|+-+.+..
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a 84 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREA 84 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHH
Confidence 334444545556678999999997543 677888887443433
No 70
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=86.79 E-value=26 Score=33.13 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=28.4
Q ss_pred HhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 152 QFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 152 ~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
...-...|++.|+|-|++... |.-|+.-|+-+.+....++..+
T Consensus 60 ~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 60 VASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 334445678999999998765 5788889985444444444433
No 71
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=86.01 E-value=11 Score=35.47 Aligned_cols=42 Identities=5% Similarity=-0.145 Sum_probs=27.4
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY 190 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~ 190 (306)
++-...-...|++.|+|-|++... +.-|+.-|+-+.+....+
T Consensus 54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~ 96 (296)
T PRK04375 54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIF 96 (296)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHH
Confidence 333444456678999999998654 677888898544433333
No 72
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=85.85 E-value=15 Score=34.53 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=28.7
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTV 192 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~ 192 (306)
++-...--..|++.|+|-|++... |..|+.-|+-+.+....+..
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~ 99 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLG 99 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 333334445678999999998665 68899999854443333333
No 73
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=85.67 E-value=4.9 Score=37.88 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCC
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVL 58 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~I 58 (306)
+.+++..+ +..+..++...+=...||+.|+|-|+++.+ |.=|+.-|+-
T Consensus 171 g~~~~~~~-ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~Tlpv~~G~~ 218 (297)
T PRK12871 171 GQPDMTAL-LYMVFFYPWTMAHLGLNDFIDLENDRARGM-KSIAVLYGMK 218 (297)
T ss_pred CCCcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHcCC-eeeeeeechH
Confidence 44555433 334556667778889999999999999875 4566666653
No 74
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.43 E-value=18 Score=33.75 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=34.5
Q ss_pred hhhHhhccCCCCCcchHHHH-HHHHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHH
Q psy13659 124 LMGWAACTGSLLDGSGGAFL-LSAILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRL 185 (306)
Q Consensus 124 l~G~~a~~g~~~~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~ 185 (306)
+.|.....+.++ +..+. ..+..++-...-...|++.|+|-|++... +.-|+.-|+-+.+
T Consensus 26 ~~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~ 86 (284)
T PRK12888 26 LTAMFASDGSVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVR 86 (284)
T ss_pred HHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHH
Confidence 333333355555 43332 23334444445556678999999998764 4668888874443
No 75
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=85.32 E-value=5.7 Score=36.90 Aligned_cols=37 Identities=3% Similarity=-0.365 Sum_probs=26.0
Q ss_pred HHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 148 LFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 148 ~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
..+-+..-...|+..|+|.|++.+ +.-|+.-|+-+.+
T Consensus 47 ~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~ 83 (283)
T TIGR01476 47 GPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLR 83 (283)
T ss_pred HHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHH
Confidence 334455555678899999999877 7788888874333
No 76
>PLN00012 chlorophyll synthetase; Provisional
Probab=84.85 E-value=5.9 Score=38.72 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
+..++..+++. +...+...+-...||+-|+|-|++... +.=|+.-|+
T Consensus 248 g~~s~~~illa-l~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~ 294 (375)
T PLN00012 248 GTLTPDVVVLT-LLYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV 294 (375)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence 44565544443 344466777889999999999998753 345665564
No 77
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=84.75 E-value=4.9 Score=37.72 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13659 18 ICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAML 78 (306)
Q Consensus 18 l~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~ 78 (306)
+..++..+..++-..+||+.|.|.||++-+ |-+| =++-.+.|..++..+..++.++.
T Consensus 164 l~~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlp-v~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 164 AVLAAFFLWGMASHAFGAVQDVVADREAGI---ASIA-TVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHhHHHcCC---ccch-HHhcHHHHHHHHHHHHHHHHHHH
Confidence 344455566888899999999999998753 3333 24556777777777777666554
No 78
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=84.33 E-value=1.3 Score=41.25 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 18 ICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 18 l~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
+..+..++.+.+-..+||..|+|-|++..+ |.=|+.-|+
T Consensus 162 ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~-~tlpv~~G~ 200 (282)
T TIGR01475 162 LLGIGVGFWIAGFDLIYAIQDYEFDRKNGL-HSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CchHHHhch
Confidence 344566677777789999999999998876 466776773
No 79
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=84.06 E-value=7.1 Score=37.00 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS 71 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~ 71 (306)
+..++..++.. +...+..++-...||+-|+|.|+++.| +.=|.-=| ++.+..+...+.
T Consensus 170 ~~~~~~~~~~s-l~~gll~~~IL~~Nn~rD~e~D~~~Gk-~TL~v~lG---~~~a~~ly~~l~ 227 (304)
T PRK07419 170 PSWSLIPLAAS-IILGLATSLILFCSHFHQVEDDLAAGK-RSPIVRLG---TKRGAQLLPWIV 227 (304)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHcCCcchhhHHHcCC-cceeeeec---hHhHHHHHHHHH
Confidence 44565444333 334467778888999999999999875 23343333 444444433333
No 80
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=83.51 E-value=37 Score=32.11 Aligned_cols=27 Identities=4% Similarity=-0.170 Sum_probs=20.6
Q ss_pred HhhhhcchhHHHcCCccccccCCchhHH
Q psy13659 158 ALSWNLRPDYSRAGYRMMAVTNPDLCRL 185 (306)
Q Consensus 158 ~~a~~D~edD~~~G~~tl~v~~G~~~~~ 185 (306)
.|++.|+|-|+.. .+..|+.-|+-+.+
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ls~~ 98 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGEFSRR 98 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcccCHH
Confidence 5678999999864 48899988884433
No 81
>PRK13591 ubiA prenyltransferase; Provisional
Probab=83.13 E-value=3.8 Score=38.97 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=19.1
Q ss_pred HhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 32 AVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 32 ~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
++||+.|.|-|+++-| +.=|+.=|+
T Consensus 197 iindirDiEGDr~~G~-kTLPV~lG~ 221 (307)
T PRK13591 197 CVYDFKDVKGDTLAGI-KTLPVSLGE 221 (307)
T ss_pred HHHHhhhhHhHHHcCC-eeEEEEECH
Confidence 6899999999999865 345655554
No 82
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=83.05 E-value=20 Score=33.36 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
++-+..-...|++.|+|-|++... |.-|+.-|+-+.+....++...
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l 98 (282)
T PRK12848 52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVL 98 (282)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 333444455678999999986554 4788888985444343343333
No 83
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=81.38 E-value=7.5 Score=36.87 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
..++..++... ...+...+-...||+.|+|-|++..+ +.=|+.-|+
T Consensus 186 ~~~~~~~l~~~-~~~l~~~~~~~~~d~~D~e~D~~aG~-~Tlpv~~G~ 231 (314)
T PRK07566 186 LPSWPIVILAL-LYSLGAHGIMTLNDFKSVEGDRQLGL-RSLPVVFGE 231 (314)
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHhHhHHHcCC-cccceeEcH
Confidence 45555444433 33345666689999999999999864 345555554
No 84
>PLN02922 prenyltransferase
Probab=80.82 E-value=7.5 Score=37.01 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q psy13659 16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALAS 70 (306)
Q Consensus 16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l 70 (306)
.++..+...+..++-...||+.|+|.|+++.| +.=|..=| ++.+..+...+
T Consensus 190 ~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk-~TL~v~lG---~~~a~~l~~~l 240 (315)
T PLN02922 190 VLSASVLVGLTTTLILFCSHFHQIDGDRAVGK-MSPLVRLG---TEKGSRVVRWA 240 (315)
T ss_pred HHHHHHHHHHHHHHHHHHccCcchhhHHHcCc-cceeeEEC---hHHHHHHHHHH
Confidence 34455566678888999999999999999975 23343334 45554444333
No 85
>PRK13595 ubiA prenyltransferase; Provisional
Probab=80.68 E-value=25 Score=33.19 Aligned_cols=23 Identities=4% Similarity=-0.165 Sum_probs=14.5
Q ss_pred HhhhhcchhHHHcCCccccccCCc
Q psy13659 158 ALSWNLRPDYSRAGYRMMAVTNPD 181 (306)
Q Consensus 158 ~~a~~D~edD~~~G~~tl~v~~G~ 181 (306)
.|++-|+|.|+++..+ -++--|+
T Consensus 66 iND~fD~eiDa~Npr~-~~i~~G~ 88 (292)
T PRK13595 66 LNDLADRETDAASPRK-GGWQGAR 88 (292)
T ss_pred HHhhhhhhhhccCCCC-CCCCcCc
Confidence 3577888888765544 4544455
No 86
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=80.60 E-value=27 Score=32.67 Aligned_cols=39 Identities=8% Similarity=-0.105 Sum_probs=25.4
Q ss_pred HhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659 152 QFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY 190 (306)
Q Consensus 152 ~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~ 190 (306)
...-...|++.|+|-|++... +.-|+.-|+-+.+....+
T Consensus 59 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~ 98 (290)
T PRK12870 59 SAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVI 98 (290)
T ss_pred HHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHH
Confidence 334445678899999987554 367888898544433333
No 87
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=80.09 E-value=8.6 Score=36.58 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHH
Q psy13659 19 CSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGT 75 (306)
Q Consensus 19 ~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl 75 (306)
..+...+..+.-...||+.|+|-|+++.| +.=|. ++-++.+..+...+..++.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk-~TL~v---~lG~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHR-YTLVY---YIGREKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCC-eeeee---eEcHHhHHHHHHHHHHHHH
Confidence 45566677777789999999999999875 23333 3445555555444444433
No 88
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=78.59 E-value=8.9 Score=36.77 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659 10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV 57 (306)
Q Consensus 10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~ 57 (306)
++++..++ ..+..++...+-.++||+.|+|-|++..| +.=|+.=|+
T Consensus 177 ~~~~~~~~-l~~~~~l~~~~~~~i~d~~D~egD~~~G~-kTlpV~~G~ 222 (331)
T PRK12392 177 DIRPEVVW-LAGLNFFMAIALIIMNDFKSVEGDKEGGL-KSLTVMIGA 222 (331)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHcccchhhHHHcCC-eeeEeEEcH
Confidence 34443333 33445567778888999999999999865 355665554
No 89
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.35 E-value=38 Score=32.15 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=27.8
Q ss_pred HHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 148 LFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 148 ~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
.++-+..-...|++.|+|-|++... |.-|+.-|+-+.+....+....
T Consensus 81 ~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 128 (314)
T PRK12878 81 AIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQ 128 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 3344444455678899999987543 3578888875444333333333
No 90
>PRK08238 hypothetical protein; Validated
Probab=77.84 E-value=25 Score=35.56 Aligned_cols=40 Identities=8% Similarity=-0.225 Sum_probs=26.7
Q ss_pred HHHHHhhhhcchhHHHcC-CccccccCCchhHHHHHHHHHH
Q psy13659 154 PHFNALSWNLRPDYSRAG-YRMMAVTNPDLCRLTSLRYTVA 193 (306)
Q Consensus 154 ~~~~~~a~~D~edD~~~G-~~tl~v~~G~~~~~~~~~~~~~ 193 (306)
.-...|++.|+|.||++- .|.-|+.-|+-.......++..
T Consensus 241 a~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~ 281 (479)
T PRK08238 241 AVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPL 281 (479)
T ss_pred HHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 334567899999999985 4667999998544433333333
No 91
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=77.66 E-value=14 Score=34.59 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG 74 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~g 74 (306)
+..++..++. .+...+..++-...||+-|+|.|+++.| +.=|. ++-++.|..+...+...+
T Consensus 157 ~~~~~~~~l~-sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk-~TL~v---~lG~~~a~~l~~~l~~~~ 217 (285)
T TIGR02235 157 QSFSLIPWKA-SILVGLATTLILFCSHFHQVEDDLAHGK-RSPVV---RLGTKLAAKIVPWVISLS 217 (285)
T ss_pred CcCcHHHHHH-HHHHHHHHHHHHHhcCCccchhHHHcCC-cceeh---eecHHhHHHHHHHHHHHH
Confidence 4567765544 3445577888899999999999999875 23333 334555555444444433
No 92
>PLN02776 prenyltransferase
Probab=77.12 E-value=45 Score=32.21 Aligned_cols=47 Identities=4% Similarity=-0.105 Sum_probs=30.3
Q ss_pred HHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 148 LFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 148 ~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
.++-...--..|++.|+|-|++... |.-|+.-|+-+.+....+++.+
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l 85 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVV 85 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3333334445568899999999776 6788888985444444444433
No 93
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=76.05 E-value=59 Score=30.51 Aligned_cols=41 Identities=5% Similarity=-0.081 Sum_probs=26.3
Q ss_pred HHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 154 PHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 154 ~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
.--..|++.|+|-|++.-+ |.-|+.-|+-+.+....++...
T Consensus 52 ag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~ 93 (286)
T PRK12895 52 SAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF 93 (286)
T ss_pred HHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3345568899999988643 4678888885444444444433
No 94
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=74.99 E-value=42 Score=31.46 Aligned_cols=48 Identities=13% Similarity=-0.116 Sum_probs=24.3
Q ss_pred CCCCCcchHHHHH-HHHHHHhHhHHHHHhhhhcchh--HHH--cCCccccccCCch
Q psy13659 132 GSLLDGSGGAFLL-SAILFTWQFPHFNALSWNLRPD--YSR--AGYRMMAVTNPDL 182 (306)
Q Consensus 132 g~~~~~~~~~~~l-~~~~~~w~~~~~~~~a~~D~ed--D~~--~G~~tl~v~~G~~ 182 (306)
++++ +...++ .+..++-+..-...++..|.|. |.+ .|.++-|+..|+-
T Consensus 35 ~~f~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~i 87 (296)
T PRK05951 35 RSFD---PLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIM 87 (296)
T ss_pred CCcC---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCc
Confidence 5666 444333 3344455555555566667333 333 2235567777763
No 95
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=74.73 E-value=63 Score=30.52 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=27.7
Q ss_pred HHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659 156 FNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL 194 (306)
Q Consensus 156 ~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~ 194 (306)
-..+++.|+|-|++.-. |.-|+.-|+-+.+....+++..
T Consensus 61 ~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~ 100 (294)
T PRK12873 61 CIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL 100 (294)
T ss_pred HHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34568899999998887 6889999985444444444433
No 96
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=74.70 E-value=17 Score=34.49 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCC
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSR 47 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~R 47 (306)
++.+|. .++..+...+..+..+..|++.|.|.|+++.|
T Consensus 172 ~~~~~~-~ll~slp~gil~~~Il~aNNirDie~D~~~gk 209 (303)
T COG1575 172 GRLSWA-ILLPSLPVGILIANILLANNLRDIEEDIRNGK 209 (303)
T ss_pred ccchHH-HHHHHHHHHHHHHHHHHhcccccchhHHhcCC
Confidence 456665 44555677778888899999999999999975
No 97
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=74.68 E-value=9.1 Score=36.19 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHH
Q psy13659 19 CSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61 (306)
Q Consensus 19 ~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~ 61 (306)
+.++.++...+=.++|++.|+|.|++... |.=|+-=|+-+.+
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi-~Slpv~~G~~a~~ 223 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGL-HSFAVVLGKWALT 223 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCC-CccHHHHhhhHHH
Confidence 44566677777779999999999998765 4556666643333
No 98
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=74.59 E-value=72 Score=29.58 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=18.1
Q ss_pred HHHHhHhHHHHHhhhhcchh--HHH-cCCccccccCCch
Q psy13659 147 ILFTWQFPHFNALSWNLRPD--YSR-AGYRMMAVTNPDL 182 (306)
Q Consensus 147 ~~~~w~~~~~~~~a~~D~ed--D~~-~G~~tl~v~~G~~ 182 (306)
..++-+..-...++..|+|. |++ ..-++-|+.-|+-
T Consensus 46 ~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~i 84 (293)
T PRK06080 46 AALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGI 84 (293)
T ss_pred HHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCC
Confidence 34444444445566677642 422 2234456667763
No 99
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=71.96 E-value=10 Score=35.61 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCC
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVL 58 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~I 58 (306)
|.+++..++ +.+..++.+.+-.++|++.|+|.|++... |.=|+.-|+=
T Consensus 158 g~~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~ 205 (291)
T PRK12886 158 GTIELPAIL-LGLAVLFWVAGFDILYALQDLEFDRKEGL-HSIPAKLGVN 205 (291)
T ss_pred CCCcHHHHH-HHHHHHHHHHHHHHHHHhccHHhHHHcCC-cCcchhcCch
Confidence 556655443 33445555666668899999999998764 4566666653
No 100
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=71.60 E-value=22 Score=33.22 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHH
Q psy13659 9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAA 73 (306)
Q Consensus 9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~ 73 (306)
+..++..++.. +...+..++-...||+-|+|.|+++.| +.=|. ++-++.|..+...+...
T Consensus 160 ~~~~~~~ll~s-l~~g~l~~~il~~Nn~~D~~~D~~~Gk-~Tl~v---~lG~~~a~~l~~~l~~~ 219 (284)
T TIGR00751 160 HRVDWVGILPA-VATGLLACAVLNINNLRDIPTDARAGK-NTLAV---RLGDARTRMYHQGLLAV 219 (284)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHcCcccchhHHHcCC-Eeehh---hcchHhHHHHHHHHHHH
Confidence 45666555443 334455577888999999999999874 22333 34455555544444433
No 101
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=70.41 E-value=39 Score=29.86 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccc---cccCCCCcccccccccccCC
Q psy13659 236 SSSRKLFRFSLLHLPALMILLLINKKH---WASHGSDAAKDSIEVSVQPS 282 (306)
Q Consensus 236 ~~~~~~F~~s~~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 282 (306)
+.-..++.+...|+.++.++++++... -.++|+|++||+++.-.|+.
T Consensus 120 eRm~sLmTs~~~YlllLvgGli~GGLlA~~~hRke~d~~kEn~nlf~qKK 169 (239)
T PF13105_consen 120 ERMTSLMTSHYLYLLLLVGGLILGGLLAMLIHRKEKDNNKENINLFKQKK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHhhHh
Confidence 445557777778888888888776652 34677888888887766655
No 102
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=70.19 E-value=63 Score=31.81 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhcccccC
Q psy13659 22 GTGLVSSAANAVNQYHEVP 40 (306)
Q Consensus 22 ~~~l~~~a~~~iND~~D~~ 40 (306)
+.-++.+--.++|++++.+
T Consensus 113 a~~~~~~ie~a~N~Iw~v~ 131 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRVN 131 (412)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3445556666899998643
No 103
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=56.43 E-value=14 Score=37.36 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHH
Q psy13659 17 LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF------GVNGLTAALG 90 (306)
Q Consensus 17 ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~------~l~~~~~~l~ 90 (306)
.+...+..++..++-.-+|++++-+|.... +++++--+||..- +..+++..++.. ++--+.+.++
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~as--e~~~v~vaRi~~v-------~~~vva~~lgi~~~gnVaflVa~AF~lA 426 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKGAT--EKKEVRVARIAVV-------ILGVVAILLGILPPGNVAFLVALAFALA 426 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCCCC--ccceehhHHHHHH-------HHHHHHHHheecCCccHHHHHHHHHHHH
Confidence 444556677788888899999998887733 4455444444333 333333333221 1112233444
Q ss_pred HHHHHHHHHhcCC-CccchhHHHHHHHHHh
Q psy13659 91 LFNMVLYTSVYTP-MKRISIANTWVGSVVG 119 (306)
Q Consensus 91 ~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~g 119 (306)
..+.+- .++++. .||.+-...+.|...|
T Consensus 427 aSa~fP-vivlglfWKr~n~~GAi~G~~~G 455 (529)
T COG4147 427 ASANFP-VIVLGLFWKRLNTAGAIAGMLLG 455 (529)
T ss_pred HHcccc-hhhHHHHHhhccHHhHHHHHHHH
Confidence 445555 566776 6888776666666665
No 104
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=50.92 E-value=2.2e+02 Score=27.03 Aligned_cols=36 Identities=6% Similarity=-0.281 Sum_probs=24.7
Q ss_pred HHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHH
Q psy13659 156 FNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYT 191 (306)
Q Consensus 156 ~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~ 191 (306)
-..|++.|+|-|++.-. |.-|..-|+-+.+....++
T Consensus 64 ~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~ 100 (300)
T PRK12876 64 IIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLL 100 (300)
T ss_pred HHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 34568899999998776 6778888984444333333
No 105
>PLN02878 homogentisate phytyltransferase
Probab=47.60 E-value=81 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcccccCcCCCCCCCCCCcccCC
Q psy13659 25 LVSSAANAVNQYHEVPFDSQMSRTKNRVLVRG 56 (306)
Q Consensus 25 l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG 56 (306)
+...+-..+||+-|.|-||+..+ +.=|+-=|
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi-~Tlpv~lG 197 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGI-RSFSVRLG 197 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCC-ceechhhC
Confidence 34445569999999999999864 23444444
No 106
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=46.92 E-value=65 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13659 12 EWSSFLICSLGTGLVSSAANAVNQYH 37 (306)
Q Consensus 12 ~~~~~ll~~l~~~l~~~a~~~iND~~ 37 (306)
+....++..++..+.-+.++++++|.
T Consensus 26 ~~~~i~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 26 DNYVIILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777778888888899999998
No 107
>PRK10484 putative transporter; Provisional
Probab=42.81 E-value=3.7e+02 Score=27.14 Aligned_cols=18 Identities=11% Similarity=-0.256 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcccccC
Q psy13659 23 TGLVSSAANAVNQYHEVP 40 (306)
Q Consensus 23 ~~l~~~a~~~iND~~D~~ 40 (306)
+.+.++++...||++.+-
T Consensus 346 s~l~s~st~~t~Diy~~~ 363 (523)
T PRK10484 346 GFLNSASTLFSLDIYKPI 363 (523)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 344456677889998654
No 108
>KOG3146|consensus
Probab=40.40 E-value=1.3e+02 Score=27.17 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=23.5
Q ss_pred HhcCC--CccchhHHHHHHHHHhhhhhhhhHhhccCCC
Q psy13659 99 SVYTP--MKRISIANTWVGSVVGAIPPLMGWAACTGSL 134 (306)
Q Consensus 99 ~~Ys~--lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~ 134 (306)
+.|+- +|-.|.-|+++|.+.|++- -.-|....|++
T Consensus 143 v~~sRVyl~yHt~sQVv~G~ivG~l~-g~~Wf~~v~sl 179 (228)
T KOG3146|consen 143 VCYSRVYLKYHTLSQVVVGAIVGGLV-GILWFYLVNSL 179 (228)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhhhH-HHHHHHHHHHH
Confidence 45665 7877777999999988543 34466555554
No 109
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.77 E-value=1.9e+02 Score=25.73 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHhHHHHHHHHHHHH-hccccc
Q psy13659 234 DSSSSRKLFRFSLLHLPALMILLLI-NKKHWA 264 (306)
Q Consensus 234 ~~~~~~~~F~~s~~~~~~l~~~~l~-~~~~~~ 264 (306)
++++.-+..-.|+..+.+++.+.++ ...+|.
T Consensus 125 ~r~~~l~VlAASn~Ii~~~LvGVLvLQaG~~Y 156 (196)
T PF08229_consen 125 DREDGLRVLAASNTIIALVLVGVLVLQAGQWY 156 (196)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHH
Confidence 5677788888888888877766544 445665
No 110
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=3.5e+02 Score=25.82 Aligned_cols=47 Identities=11% Similarity=-0.092 Sum_probs=28.8
Q ss_pred HHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHHHHHHHH
Q psy13659 154 PHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVALLVVSAA 200 (306)
Q Consensus 154 ~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~~~~~~~ 200 (306)
+-...+.+.|||=|++..+ +--|+.-|+-..+..+.++..+..++..
T Consensus 67 ~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~ 114 (304)
T COG0109 67 GAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFS 114 (304)
T ss_pred HHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 3334456789999988654 4458888874444556666555444433
No 111
>PF15111 TMEM101: TMEM101 protein family
Probab=37.29 E-value=2.4e+02 Score=25.90 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=15.7
Q ss_pred HHhhhhcchhHHHcCCcccc
Q psy13659 157 NALSWNLRPDYSRAGYRMMA 176 (306)
Q Consensus 157 ~~~a~~D~edD~~~G~~tl~ 176 (306)
.++.++.-+|||++=++.+|
T Consensus 150 ~Ay~L~~S~Edr~A~l~hip 169 (251)
T PF15111_consen 150 VAYSLQHSKEDRLAYLNHIP 169 (251)
T ss_pred HHHHHHcCHHHHHHHHhhCC
Confidence 45567889999998877775
No 112
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=37.24 E-value=1.2e+02 Score=30.06 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHH---HHHhcCC-Cccchh---H-H--HHHHHHHh-hhhhh
Q psy13659 57 VLSPLHALGFALASSAAGTAMLYFGVNGLTA-ALGLFNMVL---YTSVYTP-MKRISI---A-N--TWVGSVVG-AIPPL 124 (306)
Q Consensus 57 ~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~-~l~~~~~~l---y~~~Ys~-lKr~t~---~-~--~~vg~~~g-a~~~l 124 (306)
++++...+.+..+...+-+....+.-+.... .+.+++.+- |=.+|+. +|+... . . ++++.+-| .+|++
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecchHHHHH
Confidence 7888888777665554443333221121111 122223322 2234444 444432 2 1 23333333 48889
Q ss_pred hhHhhccCC
Q psy13659 125 MGWAACTGS 133 (306)
Q Consensus 125 ~G~~a~~g~ 133 (306)
.||.+-..+
T Consensus 378 ~G~i~d~~g 386 (422)
T COG0738 378 QGVIADMFG 386 (422)
T ss_pred HHHHHHhhh
Confidence 999885544
No 113
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.36 E-value=33 Score=26.87 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=5.0
Q ss_pred HHHHHHHhccccc
Q psy13659 252 LMILLLINKKHWA 264 (306)
Q Consensus 252 l~~~~l~~~~~~~ 264 (306)
+|+++++-..+..
T Consensus 12 ~LA~lLlisSeva 24 (95)
T PF07172_consen 12 LLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHhhhh
Confidence 3333333344443
No 114
>COG4125 Predicted membrane protein [Function unknown]
Probab=33.65 E-value=26 Score=29.41 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q psy13659 24 GLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVN 83 (306)
Q Consensus 24 ~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~ 83 (306)
++.+.-+.++|-.+..-+|+-++|.+.| =+=++...||..|=..+.++.+-+..+.+|
T Consensus 47 i~~atvAm~WN~vyN~lFd~~~rr~~~~--rT~~vRv~HAv~FE~gliv~lvP~iAw~L~ 104 (149)
T COG4125 47 ILSATVAMIWNFVYNLLFDRAERRMGTR--RTLAVRVAHAVGFELGLIVILVPLIAWWLG 104 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Confidence 3455567778888888888877763311 112334556777776666666544333344
No 115
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=32.95 E-value=2.5e+02 Score=27.95 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhccccc
Q psy13659 24 GLVSSAANAVNQYHEV 39 (306)
Q Consensus 24 ~l~~~a~~~iND~~D~ 39 (306)
.+.+.++..-||++++
T Consensus 339 ~l~~~ss~~~~Di~~~ 354 (483)
T PRK09442 339 QLLQSSSTIIKDLYLN 354 (483)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666678999976
No 116
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=31.97 E-value=3.9e+02 Score=24.18 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=9.5
Q ss_pred HHHHHHHhhcccccC
Q psy13659 26 VSSAANAVNQYHEVP 40 (306)
Q Consensus 26 ~~~a~~~iND~~D~~ 40 (306)
+.+--..+|+.++++
T Consensus 100 ~~~l~~aln~i~~~~ 114 (263)
T TIGR00766 100 MGNLREAISDVWERP 114 (263)
T ss_pred HHHHHHHHHHHhCCC
Confidence 334445788888764
No 117
>PRK01637 hypothetical protein; Reviewed
Probab=30.90 E-value=4.3e+02 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHhcCC-CccchhH-HHHHHHHHhhhhhh
Q psy13659 98 TSVYTP-MKRISIA-NTWVGSVVGAIPPL 124 (306)
Q Consensus 98 ~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l 124 (306)
..+|.. ..++..+ +++.|+++.++...
T Consensus 188 ~~lY~~~P~~k~~~r~~~~Ga~~a~~~w~ 216 (286)
T PRK01637 188 WLLYSVVPNKKVPFRHALVGALVAALLFE 216 (286)
T ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHH
Confidence 567877 4333445 78888877654433
No 118
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=30.65 E-value=3.8e+02 Score=23.70 Aligned_cols=29 Identities=0% Similarity=-0.111 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccccC
Q psy13659 12 EWSSFLICSLGTGLVSSAANAVNQYHEVP 40 (306)
Q Consensus 12 ~~~~~ll~~l~~~l~~~a~~~iND~~D~~ 40 (306)
++.....++++........+.+...+||.
T Consensus 75 d~~g~~~l~~al~~~~ll~~~LK~~~~R~ 103 (190)
T PRK09597 75 DAIGLFQVANASIATTLLTHTTKRALNHV 103 (190)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555666666667777778889999885
No 119
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.14 E-value=1.3e+02 Score=24.67 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCccch
Q psy13659 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS 108 (306)
Q Consensus 60 ~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ly~~~Ys~lKr~t 108 (306)
++++...++.++.+++..+++..++...-.+.+...+ ...+-.+||++
T Consensus 70 ~~~aK~~ai~~i~~~~~~s~~~v~~~~~r~~l~~v~l-~~~~~~~~~~P 117 (119)
T COG2832 70 PRKAKIKAILLITLSIGISFYFVPVLWVRVALVAVIL-FGTAYIFKRRP 117 (119)
T ss_pred ChhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HHHhheeEecC
Confidence 5567788888888888888766666554444443443 23333456654
No 120
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=26.06 E-value=1.2e+02 Score=22.60 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=5.1
Q ss_pred ccCcCCCCCC
Q psy13659 38 EVPFDSQMSR 47 (306)
Q Consensus 38 D~~iD~~~~R 47 (306)
|-++++.+++
T Consensus 22 DP~fa~~l~~ 31 (82)
T PF11239_consen 22 DPRFAARLRS 31 (82)
T ss_pred CcHHHHHhcc
Confidence 3455555554
No 121
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=25.95 E-value=5e+02 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhcccccC
Q psy13659 21 LGTGLVSSAANAVNQYHEVP 40 (306)
Q Consensus 21 l~~~l~~~a~~~iND~~D~~ 40 (306)
.++-.+.+--..+|+.+|.+
T Consensus 95 sas~~~~~l~~~ln~i~~~~ 114 (259)
T TIGR00765 95 TALLLINNIDSTLNKIWRVK 114 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 34445555556788888754
No 122
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=25.93 E-value=5.8e+02 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13659 52 VLVRGVLSPLHALGFALASSAAGTAM 77 (306)
Q Consensus 52 PL~sG~Is~~~A~~~~~~l~~~gl~l 77 (306)
++-+|.+++++|+.++.++..+|..+
T Consensus 13 ~Vgs~al~~~~A~ila~i~~~lGa~l 38 (326)
T PF01384_consen 13 AVGSRALTPRQALILAAIFNFLGALL 38 (326)
T ss_pred HHhcCccCHHHHHHHHHHHHHhHHHH
Confidence 34589999999999999999998766
No 123
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=25.40 E-value=9.4e+02 Score=26.53 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=18.9
Q ss_pred chhHHH-cCCccc-cccCCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy13659 164 RPDYSR-AGYRMM-AVTNPDLCRLTSLRYTVALLVVSAAGPLLD 205 (306)
Q Consensus 164 ~edD~~-~G~~tl-~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
.++.++ .|.+.. ++..+-+.|.+-...+.+...++.+|..++
T Consensus 940 ~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTtlTti~G~lPla~~ 983 (1021)
T PF00873_consen 940 INELRKREGMPLEEAIIEAARSRLRPILMTTLTTILGMLPLALG 983 (1021)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 344455 566444 555554433332333333333445554443
No 124
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=25.13 E-value=5.9e+02 Score=25.95 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhccccc
Q psy13659 23 TGLVSSAANAVNQYHEV 39 (306)
Q Consensus 23 ~~l~~~a~~~iND~~D~ 39 (306)
+.+.++++...||++.+
T Consensus 373 s~l~a~st~i~~Diy~~ 389 (549)
T TIGR02711 373 GLTLAGASAVSHDLYAN 389 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455677888999975
No 125
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=24.28 E-value=4.3e+02 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCC
Q psy13659 11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSR 47 (306)
Q Consensus 11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~R 47 (306)
.+....++..++..+.-+-++..-+|.-.+.+|..++
T Consensus 27 ~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~ 63 (149)
T cd02431 27 NNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKE 63 (149)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHh
Confidence 3555566677777778888899999997766655543
No 126
>PRK12488 acetate permease; Provisional
Probab=23.23 E-value=6.3e+02 Score=25.76 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhccccc
Q psy13659 24 GLVSSAANAVNQYHEV 39 (306)
Q Consensus 24 ~l~~~a~~~iND~~D~ 39 (306)
.+.++++..-||++.+
T Consensus 374 ~lls~st~is~Diy~~ 389 (549)
T PRK12488 374 LALSGASAVSHDLYAC 389 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777888999975
No 127
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=22.26 E-value=4.3e+02 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13659 12 EWSSFLICSLGTGLVSSAANAVNQYH 37 (306)
Q Consensus 12 ~~~~~ll~~l~~~l~~~a~~~iND~~ 37 (306)
+....+...++..+.-+-++.+.+|.
T Consensus 31 ~~~~i~~~Gla~~iA~a~Sma~g~yv 56 (175)
T cd02437 31 DPKIIIAAGLGGAFALGISNGLGAAV 56 (175)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888888888887
No 128
>KOG2513|consensus
Probab=21.90 E-value=1.2e+02 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCcCCC-CCCCCCCcccCC
Q psy13659 19 CSLGTGLVSSAANAVNQYHEVPFDSQ-MSRTKNRVLVRG 56 (306)
Q Consensus 19 ~~l~~~l~~~a~~~iND~~D~~iD~~-~~Rt~~RPL~sG 56 (306)
++-+.+=.++..+.+|+..+...|+. .-++-+||.|..
T Consensus 489 lFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r 527 (647)
T KOG2513|consen 489 LFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRR 527 (647)
T ss_pred HHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcch
Confidence 33344445667789999999999984 445568999983
No 129
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.76 E-value=7e+02 Score=23.72 Aligned_cols=93 Identities=14% Similarity=-0.022 Sum_probs=45.3
Q ss_pred cchhHHHcCCccc-cccCCchhHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHH-HHHHhcc----CCh
Q psy13659 163 LRPDYSRAGYRMM-AVTNPDLCRLTSLRYTVALLVVSAAGP-LLDVTNVWFALESIPLNAYFTYL-AYKFYKE----SDS 235 (306)
Q Consensus 163 D~edD~~~G~~tl-~v~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~-a~~~~~~----~~~ 235 (306)
+.|++|+.=.+++ |+-.|.++..+.. .....+..|. +....+-.|....+++-...+.- +..+..+ ..+
T Consensus 36 ~~~~eR~~~~~sigPvWdgNevWLV~~----gg~lfaaFP~~ya~l~s~lylpl~liL~~li~RgvafefR~~~~~~~~r 111 (328)
T PF02322_consen 36 RDEEERRIILNSIGPVWDGNEVWLVFA----GGALFAAFPLAYATLFSGLYLPLFLILLGLILRGVAFEFRHKADSPRWR 111 (328)
T ss_pred CCHHHHHHHHHhhccccchHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhH
Confidence 4566777766666 6666765433221 1111222222 22223445554444333333332 2222221 133
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q psy13659 236 SSSRKLFRFSLLHLPALMILLLIN 259 (306)
Q Consensus 236 ~~~~~~F~~s~~~~~~l~~~~l~~ 259 (306)
+...+.|..++...+++++..+-.
T Consensus 112 ~~wd~~~~~gSll~~~~~G~~~g~ 135 (328)
T PF02322_consen 112 RFWDWVFFIGSLLPPFLLGVALGN 135 (328)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456667888888777777666543
No 130
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=20.55 E-value=6.2e+02 Score=22.67 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=23.7
Q ss_pred ccccCCCCcccccc-------cccccCCccccccCCcccccccccccc
Q psy13659 262 HWASHGSDAAKDSI-------EVSVQPSIDSLITPPNPATLGLKLGPV 302 (306)
Q Consensus 262 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (306)
+|+..+-.|-||+. |.+-|-+++.+.+|+.+ +.|.|-+
T Consensus 143 dyTyG~VeEv~~~~v~V~V~dDI~ANVkPg~YwV~~~~---d~~~G~v 187 (206)
T PF09874_consen 143 DYTYGVVEEVKENLVRVFVHDDIAANVKPGYYWVEAVP---DVEEGDV 187 (206)
T ss_pred cceeEEEEEecCCEEEEEEccchhhcCCCCeEEecCCC---CCCCCce
Confidence 45555444434332 55778889999999987 4455543
No 131
>PRK09577 multidrug efflux protein; Reviewed
Probab=20.08 E-value=8.1e+02 Score=27.26 Aligned_cols=13 Identities=8% Similarity=-0.128 Sum_probs=6.3
Q ss_pred hhhhHhhccCCCC
Q psy13659 123 PLMGWAACTGSLL 135 (306)
Q Consensus 123 ~l~G~~a~~g~~~ 135 (306)
.+.|....+.+++
T Consensus 906 ~~~~l~l~g~~l~ 918 (1032)
T PRK09577 906 AVLGVTLRGMPND 918 (1032)
T ss_pred HHHHHHHhCCCcc
Confidence 3445555444454
Done!