Query psy13659
Match_columns 306
No_of_seqs 223 out of 1754
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:05:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 57.1 1.4E+02 0.0048 28.7 15.6 17 104-120 419-435 (530)
2 2xq2_A Sodium/glucose cotransp 26.2 4.6E+02 0.016 25.4 16.6 17 104-120 448-464 (593)
3 1eik_A RNA polymerase subunit 9.3 51 0.0017 23.8 -0.7 37 268-304 18-58 (77)
4 2kv5_A FST, putative uncharact 9.0 3.1E+02 0.011 16.4 2.9 25 246-270 7-31 (33)
5 1hmj_A RPB5, protein (subunit 8.5 49 0.0017 24.0 -1.0 37 268-304 16-56 (78)
6 4dx5_A Acriflavine resistance 8.4 1.6E+03 0.054 23.2 15.0 7 129-135 918-924 (1057)
7 2ls2_A High affinity copper up 10.5 87 0.003 17.7 0.0 18 88-105 8-25 (26)
8 2kdc_A Diacylglycerol kinase; 6.6 4.7E+02 0.016 20.1 3.8 31 23-55 61-91 (121)
9 2v50_A Multidrug resistance pr 5.7 2.1E+03 0.073 22.2 9.6 7 129-135 917-923 (1052)
10 3ukw_C Bimax1 peptide; arm rep 5.6 2.9E+02 0.0099 15.4 1.5 14 38-51 13-26 (28)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=57.07 E-value=1.4e+02 Score=28.74 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=11.5
Q ss_pred CccchhHHHHHHHHHhh
Q psy13659 104 MKRISIANTWVGSVVGA 120 (306)
Q Consensus 104 lKr~t~~~~~vg~~~ga 120 (306)
.||.+....+.|.+.|.
T Consensus 419 wkr~~~~gA~~g~i~G~ 435 (530)
T 3dh4_A 419 WKKTTSKGAIIGVVASI 435 (530)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 57777776666776663
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=26.20 E-value=4.6e+02 Score=25.45 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=11.3
Q ss_pred CccchhHHHHHHHHHhh
Q psy13659 104 MKRISIANTWVGSVVGA 120 (306)
Q Consensus 104 lKr~t~~~~~vg~~~ga 120 (306)
.||.+....+.|.+.|.
T Consensus 448 wkr~~~~gA~~g~i~G~ 464 (593)
T 2xq2_A 448 WKKTTSKGAIIGVVASI 464 (593)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 57777766666666663
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=9.26 E-value=51 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCcccccc--cccccCC--ccccccCCcccccccccccccc
Q psy13659 268 SDAAKDSI--EVSVQPS--IDSLITPPNPATLGLKLGPVIE 304 (306)
Q Consensus 268 ~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
++|||++. ++...++ +-=.-.-|....+|+|-|-|++
T Consensus 18 s~eEk~~lL~~y~i~~~qLP~I~~~DPvar~~G~k~GdVvk 58 (77)
T 1eik_A 18 NESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVK 58 (77)
T ss_dssp CHHHHHHHHHHTTCCTTTSCCCBTTSHHHHGGGCCTTCEEE
T ss_pred CHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEE
Confidence 34545544 5665554 3223334556678999998874
No 4
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=8.99 E-value=3.1e+02 Score=16.39 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhccccccCCCCc
Q psy13659 246 LLHLPALMILLLINKKHWASHGSDA 270 (306)
Q Consensus 246 ~~~~~~l~~~~l~~~~~~~~~~~~~ 270 (306)
....|++.+.++---..|..+++|.
T Consensus 7 ~IIaPivVGvvl~L~d~WLn~r~~~ 31 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRVLDEEDDS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccccc
Confidence 3445555555544445787665543
No 5
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=8.55 E-value=49 Score=23.96 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCcccccc--cccccCC--ccccccCCcccccccccccccc
Q psy13659 268 SDAAKDSI--EVSVQPS--IDSLITPPNPATLGLKLGPVIE 304 (306)
Q Consensus 268 ~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
++|||++. ++...++ +-=.-.-|....+|+|-|-|++
T Consensus 16 s~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvk 56 (78)
T 1hmj_A 16 PKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVR 56 (78)
T ss_pred CHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEE
Confidence 44545444 5555544 3333344566788999998874
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=8.45 E-value=1.6e+03 Score=23.24 Aligned_cols=7 Identities=0% Similarity=-0.733 Sum_probs=3.3
Q ss_pred hccCCCC
Q psy13659 129 ACTGSLL 135 (306)
Q Consensus 129 a~~g~~~ 135 (306)
..+..++
T Consensus 918 ~~g~~l~ 924 (1057)
T 4dx5_A 918 FRGLTND 924 (1057)
T ss_dssp HHTCCBC
T ss_pred HHCCCcc
Confidence 3344555
No 7
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=10.49 E-value=87 Score=17.69 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcCCCc
Q psy13659 88 ALGLFNMVLYTSVYTPMK 105 (306)
Q Consensus 88 ~l~~~~~~ly~~~Ys~lK 105 (306)
+.+++++++..+.|..+|
T Consensus 8 v~Sci~ifll~~~YE~Lk 25 (26)
T 2ls2_A 8 AGAFVAVFLLAMFYEGLK 25 (26)
Confidence 344444544466676665
No 8
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=6.56 E-value=4.7e+02 Score=20.11 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcccccCcCCCCCCCCCCcccC
Q psy13659 23 TGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVR 55 (306)
Q Consensus 23 ~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~s 55 (306)
++...-..-.+|--.|.=.|+..+ ...|+..
T Consensus 61 ~i~lVl~~EllNTAIE~vvD~v~~--e~h~lak 91 (121)
T 2kdc_A 61 SVMLVMIVEILNSAIEAVVDRIGS--EYHELSG 91 (121)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCCC--CSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--ccCHHHH
Confidence 445566778899999998888766 4677765
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=5.68 E-value=2.1e+03 Score=22.22 Aligned_cols=7 Identities=14% Similarity=-0.624 Sum_probs=3.2
Q ss_pred hccCCCC
Q psy13659 129 ACTGSLL 135 (306)
Q Consensus 129 a~~g~~~ 135 (306)
..+..++
T Consensus 917 ~~g~~l~ 923 (1052)
T 2v50_A 917 MRGLSND 923 (1052)
T ss_dssp HTTCCBS
T ss_pred HHCCCcc
Confidence 3344455
No 10
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=5.63 E-value=2.9e+02 Score=15.36 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=8.8
Q ss_pred ccCcCCCCCCCCCC
Q psy13659 38 EVPFDSQMSRTKNR 51 (306)
Q Consensus 38 D~~iD~~~~Rt~~R 51 (306)
+.|-|..-+|+++|
T Consensus 13 ewdedeepprkrkr 26 (28)
T 3ukw_C 13 EWDEDEEPPRKRKR 26 (28)
T ss_dssp CCCGGGSCCSSCCC
T ss_pred ccccccCcchhhhc
Confidence 45667666776555
Done!