RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13659
(306 letters)
>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase.
Length = 341
Score = 258 bits (662), Expect = 4e-85
Identities = 114/266 (42%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 2 AGYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
AG+ + + GT L +++AN +NQ EV DS+M RT R L G +S
Sbjct: 16 AGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
HA+ +A+ AAG A+L + N LTA LG N++LY VYTP+K+I ANTWVG+VVGA
Sbjct: 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGA 135
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
IPPLMGWAA +G L GA +L+A L+ WQ PHF AL++ R DY+ GYRM+++ +
Sbjct: 136 IPPLMGWAAASGQL---DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA 192
Query: 181 DLCR--LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238
R L +LR + L + VT+ FALE+ L AY A FY+E ++++
Sbjct: 193 TGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAASFYREPTNANA 252
Query: 239 RKLFRFSLLHLPALMILLLINKKHWA 264
RK+F SLL+LPA M LLL+++
Sbjct: 253 RKMFHGSLLYLPAFMALLLLHRVPND 278
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 252 bits (647), Expect = 1e-83
Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 12/265 (4%)
Query: 2 AGYAMAPAPFE--WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
AG +AP L+ LGT L +++ANA N Y + D +M RT+NR LV G +S
Sbjct: 21 AGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS 80
Query: 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVV 118
P AL F L G A+L VN L A LGLF + Y VYT +KR + NT +G
Sbjct: 81 PREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFA 140
Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
GA+PPL+GWAA TGS+ S GA+LL AI+F WQ PHF AL+ + DY AG M+ V
Sbjct: 141 GAVPPLIGWAAVTGSI---SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVV 197
Query: 179 NPDLCRLTSLR---YTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES-D 234
+ R+T + YT ALL VS L T + + + L A F YLA+KFY++ D
Sbjct: 198 KGE--RITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFKFYRDPTD 255
Query: 235 SSSSRKLFRFSLLHLPALMILLLIN 259
+RKLF+FSL++L L + LLI+
Sbjct: 256 RKKARKLFKFSLIYLALLFVALLID 280
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 225 bits (576), Expect = 1e-72
Identities = 105/261 (40%), Positives = 143/261 (54%), Gaps = 6/261 (2%)
Query: 1 MAGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
AG +AP L+ LG L + A A N Y + D+ M RT+ R LV G++S
Sbjct: 38 FAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLIS 97
Query: 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVV 118
P AL F L AG ++L+F VN L A LGLF + Y VYT +KR + N +G
Sbjct: 98 PREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFA 157
Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
GA+PPL+GWAA TGS+ S GA LL AI+F W PHF AL+ + DY AG M+ V
Sbjct: 158 GAMPPLIGWAAVTGSI---SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVV 214
Query: 179 N-PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSS 237
+ L YT+AL VS LL + + + L A+F LA+K Y++ D
Sbjct: 215 KGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKW 274
Query: 238 SRKLFRFSLLHLPALMILLLI 258
+RKLF++S+++L L + LLI
Sbjct: 275 ARKLFKYSIIYLALLFVALLI 295
>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 201 bits (513), Expect = 4e-63
Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
P L+ LG LV+ AA A+N Y + D++M RTKNR LV G +SP AL F
Sbjct: 37 PPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIF 96
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
L G +L VN L A L L + Y VYT +KR + N +G GA+PPL+
Sbjct: 97 GLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLI 156
Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCR 184
GWAA TGSL S A +L I+F W PHF AL+ + DY+ AG M+ V + +
Sbjct: 157 GWAAVTGSL---SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTK 213
Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
L YTV L+ VS LL + + + + ++ L A+F Y A++ Y++ D +RKLFR+
Sbjct: 214 RQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRY 273
Query: 245 SLLHLPALMILLLI 258
S+ +L L + LL+
Sbjct: 274 SINYLTLLFVALLV 287
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.
Length = 306
Score = 157 bits (398), Expect = 6e-46
Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 7/252 (2%)
Query: 12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS 71
+ L +G LV ++ A+N + D++M RT+NRV V G +S ALGF LA
Sbjct: 45 DPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALG 104
Query: 72 AAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAAC 130
AG +L N L A F V+Y VY+ +KR S+ T VGS+ GA+PP++G+ A
Sbjct: 105 VAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAV 164
Query: 131 TGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLR 189
TG GA +L + WQ PH A++ DY+ AG ++ V +L +
Sbjct: 165 TGQF---DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL 221
Query: 190 YTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYK--ESDSSSSRKLFRFSLL 247
Y + +V+A PL T + + + + ++ +A K Y+ D+ +R+LF FS+L
Sbjct: 222 YILVFALVTALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSIL 281
Query: 248 HLPALMILLLIN 259
+ AL +++L++
Sbjct: 282 TITALSVMMLLD 293
>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed.
Length = 279
Score = 95.2 bits (237), Expect = 8e-23
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 8/260 (3%)
Query: 1 MAGYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
+AGY +A W + +G L S + A N E D MSRT R G+++
Sbjct: 22 VAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVN 81
Query: 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPM-KRISIANTWVGSVV 118
AL A SA GTA+ + + LTA Y VYT K + N +G
Sbjct: 82 RKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFA 141
Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
G L G+A+ TGSL A LLS +++ W H +L+ R DY RAG M+
Sbjct: 142 GNAAALAGYASGTGSL---DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAV 198
Query: 179 NPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238
+ + ++ + AL++ L + + L+A + + +
Sbjct: 199 VGEKTSVRAISISNALMIPYILLLYLYYIGLIGLILVAILSAALMATSIRALLNPTKEEA 258
Query: 239 RKLFRFSLLHLPALMILLLI 258
K+F+ S P L + LL
Sbjct: 259 WKMFKAS---SPYLALFLLA 275
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 75.6 bits (186), Expect = 7e-16
Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 8/249 (3%)
Query: 4 YAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHA 63
A + L+ L L+ +A N +N Y + D+ +R L G +SP A
Sbjct: 13 ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72
Query: 64 LGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP---MKRISIANTWVGSVVGA 120
L LA G + + L LGL ++L +Y+P +KR + V +
Sbjct: 73 LLLGLALLLLGLLLALL-LGPLLLLLGLLGLLLGL-LYSPPLRLKRRPLLGELVVGLAFG 130
Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
+ L+G A G D LL+ +F +AG R + V
Sbjct: 131 LLILLGAYAVGG---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLG 187
Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
L +A ++ LL + + L + L A + + +R
Sbjct: 188 RKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPART 247
Query: 241 LFRFSLLHL 249
+LL
Sbjct: 248 FLFIALLFG 256
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 68.9 bits (169), Expect = 2e-13
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 10/250 (4%)
Query: 11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALAS 70
L+ L L SA +N + D RTKNR L G +S AL A+
Sbjct: 44 PSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILL 103
Query: 71 SAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS-IANTWVGSVVGAIPPLMGWAA 129
G A+ +N L L L +VL Y +KR + + +G G + L G AA
Sbjct: 104 LLLGLALALL-LNPLAFLLSLAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAA 160
Query: 130 CTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT-NPDLCRLTSL 188
GSL LL+AIL+T + A+ +AG + + V +L
Sbjct: 161 VGGSLP-LLAWLLLLAAILWTLGYDIIYAIQ--DIEGDRKAGLKSLPVLFGIKKALALAL 217
Query: 189 RYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248
+A ++ G L + + + L + Y D + LF +LL
Sbjct: 218 LLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILI-VDVRDPPACFALFDVNLL- 275
Query: 249 LPALMILLLI 258
L L+ + LI
Sbjct: 276 LGLLLFIGLI 285
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase,
proteobacterial. This model represents a family of
integral membrane proteins that condenses
para-hydroxybenzoate with any of several
polyprenyldiphosphates. Heterologous expression studies
suggest that for, many but not all members, the activity
seen (e.g. octaprenyltransferase in E. coli) reflects
available host isoprenyl pools rather than enzyme
specificity. A fairly deep split by both clustering
(UPGMA) and phylogenetics (NJ tree) separates this group
(mostly Proteobacterial and mitochondrial), with several
characterized members, from another group (mostly
archaeal and Gram-positive bacterial) lacking
characterized members [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 281
Score = 49.6 bits (119), Expect = 6e-07
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 21 LGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80
+G L+ A +N + FD Q+ RTK+R L G +S A+ F L +L
Sbjct: 47 VGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVL-L 105
Query: 81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVV-------GAIPPLMGWAACTGS 133
+N LT LG+ ++ L + Y MKRI T+ +V GA LMGWAA TG
Sbjct: 106 QLNPLTILLGVASLAL-VATYPFMKRI----TYWPQLVLGLAFGWGA---LMGWAAVTGD 157
Query: 134 LLD 136
L
Sbjct: 158 LST 160
>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase.
Length = 289
Score = 48.5 bits (116), Expect = 1e-06
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 5 AMAPAPFEWSSFLICSL-GTG--LVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
A+A P + +L G G L+ A +N + D ++ RTK R + G L+P
Sbjct: 33 ALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPF 92
Query: 62 HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
+GF A G +L +N + LG +++L + Y MKR + W + +G
Sbjct: 93 QGVGFLGAQLLLGLGIL-LQLNNYSRILGASSLLLVFT-YPLMKRFT---FWPQAFLGLT 147
Query: 122 ---PPLMGWAACTGSL 134
L+GWAA GSL
Sbjct: 148 FNWGALLGWAAVKGSL 163
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 48.4 bits (116), Expect = 2e-06
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
I LG S+A VN + D Q+ RT+ R L LS + A+ +
Sbjct: 45 LPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALL 104
Query: 73 AGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTG 132
+ +F +N L+ L + V +Y KR+ V ++ L+ W+A TG
Sbjct: 105 CAAGLAFF-LNPLSFWLCV-AAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTG 162
Query: 133 SLLDGSGGAFLLSAILFTWQ 152
L G +LL A W
Sbjct: 163 HL---DLGTWLLWAATVFWT 179
>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate
polyprenyltransferase. A fairly deep split separates
this polyprenyltransferase subfamily from the set of
mitochondrial and proteobacterial 4-hydroxybenzoate
polyprenyltransferases, described in TIGR01474.
Protoheme IX farnesyltransferase (heme O synthase)
(TIGR01473) is more distantly related. Because no
species appears to have both this protein and a member
of TIGR01474, it is likely that This model represents
4-hydroxybenzoate polyprenyltransferase, a critical
enzyme of ubiquinone biosynthesis, in the Archaea,
Gram-positive bacteria, Aquifex aeolicus, the
Chlamydias, etc [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 282
Score = 48.1 bits (115), Expect = 2e-06
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 10 PFEWSSFLICSLG-----------TGLVS--SAANAVNQYHEVPFDSQMSRTKNRVLVRG 56
PF ++ L+ + G VS +AA A N+ + D++ RTKNR LV G
Sbjct: 19 PFAYAGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSG 78
Query: 57 VLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS-IANTWVG 115
++S A + S A + YF +N L L ++L +Y KR + + + +G
Sbjct: 79 LISKKEARTMIILSLALFLSASYF-LNPLAFIL-SPLVLLVLIIYPYTKRFTFLCHYVLG 136
Query: 116 SVVGAIPPLMGWAACTGS 133
S G PL GW A G+
Sbjct: 137 STYGLA-PLAGWVAVIGT 153
>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 314
Score = 46.5 bits (111), Expect = 7e-06
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)
Query: 2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
AG A + +G + A N + D++++RT++R L G +S
Sbjct: 60 AGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRK 119
Query: 62 HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS--------IANTW 113
A F + + G A+L N ALG+ ++ + + Y MKRI+ +A +W
Sbjct: 120 QAKVFMVLQALVGLAVL-LQFNWFAIALGIASLAI-VAAYPFMKRITWWPQFFLGLAFSW 177
Query: 114 VGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
GA LMGWAA GSL S A LL A W
Sbjct: 178 -----GA---LMGWAAHFGSL---SLAAVLLYAGSIAW 204
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 46.0 bits (110), Expect = 1e-05
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS 71
+ ++ LG L+ +A +N Y + FD + RTKNR L G +S AL +
Sbjct: 40 DLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLV 99
Query: 72 AAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS--------IANTWVGSVVGAIPP 123
+L +N LT L + + L +Y MKR + A W IP
Sbjct: 100 LV-AFLLVLTLNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAFGW------GIP- 150
Query: 124 LMGWAACTGSL 134
M +AA GS+
Sbjct: 151 -MAFAAVQGSV 160
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 42.3 bits (100), Expect = 2e-04
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTK--NRVLVRGVLS 59
AG ++ +F L + A NA+N Y FD ++ R +R + G +S
Sbjct: 30 AGGILSSPSLTGLAFAA----VFLATGAGNAINDY----FDREIDRINRPDRPIPSGAVS 81
Query: 60 PLHALGFALASSAAGTAMLYFGVNGLTAALGLFN---MVLYTSVY--TPMKRISIANTWV 114
P AL F++ AAG A L F + L A+ LFN +VLY TP + N V
Sbjct: 82 PRGALAFSILLFAAGVA-LAFLLPPLCLAIALFNSLLLVLYAETLKGTPG----LGNASV 136
Query: 115 GSVVGAI 121
+ G+
Sbjct: 137 AYLTGST 143
>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 42.2 bits (100), Expect = 2e-04
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 15 SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG 74
++ +G+ L+ SA +N + D ++RTKNR L G LS AL
Sbjct: 46 LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIA 105
Query: 75 TAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSL 134
+L +N T L ++L +Y MKR + LM +AA L
Sbjct: 106 LVILLL-LNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQL 163
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 36.6 bits (85), Expect = 0.011
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGT 75
FL+ LG S N +N Y + D +++R NR L RG +S AL ++L A G
Sbjct: 43 FLVVYLGC----SGGNTINDYFDYEID-KINR-PNRPLPRGAMSRKAALYYSLLLFAVGL 96
Query: 76 AMLYF-GVNGLTAALG-LFNMVLYTSVYTPMKRISIANTWVGSVVGAIP 122
A+ Y + ALG M LY P+ I N V + GA P
Sbjct: 97 ALAYLINIEAFLFALGAYVLMFLYAWKLKPLP--FIGNVVVALLTGATP 143
>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 35.1 bits (81), Expect = 0.030
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 36/164 (21%)
Query: 10 PFEWSSFLICSLGTGLVS-------------SAANAVNQYHEVPFDSQMSRTKNRVLVRG 56
PF ++ +LG S +AA N+ + D++ RT R + G
Sbjct: 25 PFAGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAG 84
Query: 57 VLSPLHALGFALASSAAGTAMLY--FGVNGLTAAL---GLFNMVLYTSVYTPMKRISIAN 111
++S A+ F + SS ML+ + +N L L LF ++LY+ Y KR
Sbjct: 85 LISKGSAILFIVLSSL---LMLFAAWFLNPLCLYLSPPALFFLLLYS--YC--KRF---- 133
Query: 112 TWVGSVVG----AIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
T + VV A+ PL W A G++ A LL + W
Sbjct: 134 TALAHVVLGFCLALAPLGAWIAIRGTI---ELPAILLGLAVLFW 174
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 34.5 bits (80), Expect = 0.054
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 17 LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTA 76
L+ L S +ANA+N Y + D ++R +R + G +S AL A+ G
Sbjct: 40 LLGFLTAFFASGSANALNDYFDYEVDR-INRP-DRPIPSGRISRREALLLAILLFILGLI 97
Query: 77 MLYF--GVNGLTAALGLFNMVLY 97
Y + L L +LY
Sbjct: 98 AAYLISPLAFLVVILVSVLGILY 120
>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed.
Length = 294
Score = 33.9 bits (78), Expect = 0.086
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 21 LGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALG---FALASSAAGTAM 77
LG VS A N + D ++ RTKNR L RG +S A L S
Sbjct: 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLS 110
Query: 78 LYFGVNGLT---AALGLFNMVLYTSV--YTPMKRISIANTWVGSVVGAIPPLMGWAACTG 132
L L A L L +++Y S + + +A W +V+ IP WAA G
Sbjct: 111 LPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVL--IP----WAAAEG 164
Query: 133 SLLDGSGGAFLLSAILFT--WQF 153
SL +GG LL L T W F
Sbjct: 165 SL---NGGWPLLFCWLATLLWTF 184
>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed.
Length = 284
Score = 32.8 bits (75), Expect = 0.17
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
W+ L+ ++ + A A N+ + D++ RT R LV G +S A AL + A
Sbjct: 38 WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALA 97
Query: 73 ---AGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAA 129
A+L N L AL + VY KR + + + A+ P+ W A
Sbjct: 98 VFLGAAALL----NPLCLALAPLAVAPLV-VYPYAKRFTNFPHAILGLAQAVGPVGAWIA 152
Query: 130 CTGSLLDGSGGAFLLSAILFTW 151
TG+ S A LL + W
Sbjct: 153 VTGTW---SWPAVLLGLAVGLW 171
>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 31.5 bits (72), Expect = 0.45
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 13 WSSFLICSLGTGLVSSAAN---AVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALA 69
W F + LG SA N A N+ + D RT NR V G +S + F +
Sbjct: 43 WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVL 102
Query: 70 SSAAGTAMLYFGVNGLTAALGL-FNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWA 128
++ + YF +N L L F +VL Y+ KR S V + + P+ G
Sbjct: 103 NALIFIGVSYF-INPLAFKLSFPFLIVL--GGYSYFKRFSSLAHLVLGLSLGLAPIAGVV 159
Query: 129 ACTGSL 134
A G +
Sbjct: 160 AVLGEI 165
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 31.6 bits (72), Expect = 0.49
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 9/166 (5%)
Query: 1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
+ + S+ ++ L + +A + ++ D++ RTKNR LV G +
Sbjct: 36 LGAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKI 95
Query: 61 LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRI-SIANTWVGSVV- 118
A A A Y VN L ++ S Y MKR + AN + S+
Sbjct: 96 SEAKALITAGLILFFASAYL-VNRWALLLSPIVALIAMS-YPYMKRYTAFANYHLASIQG 153
Query: 119 -----GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL 159
GA+ L +A +L F++ IL+ F +N +
Sbjct: 154 LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHI 199
>gnl|CDD|222477 pfam13965, SID-1_RNA_chan, dsRNA-gated channel SID-1. This is a
family of proteins that are transmembrane dsRNA-gated
channels. They passively transport dsRNA into cells and
do not act as ATP-dependent pumps. They are required for
systemic RNA interference.
Length = 567
Score = 29.7 bits (67), Expect = 2.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 66 FALASSAAGTAMLYFGV-----NGLTAALGLF--NMVLYTSVYTPMKRIS 108
F LA + A +G+ + L +F N++LY Y MK IS
Sbjct: 426 FLLAFNIVNFAAAVYGLTLSPIDFAQFLLYIFIGNLILYLVFYILMKLIS 475
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 29.1 bits (66), Expect = 2.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 25 LVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFA---LASSAAGTAMLYFG 81
L SSA VN +V D +NR + GV+S A A L +S A +L
Sbjct: 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPK 116
Query: 82 VNGLTAALGLFNMVLYT 98
+ + + N + Y+
Sbjct: 117 LALVLLVYLVLN-LAYS 132
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 28.8 bits (65), Expect = 3.8
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 195 LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMI 254
+ S L ++ L + + F L ++ + R L R + + + I
Sbjct: 16 AIQSVNLNLWGISTTLIVL--LLILIIFLILIIIYFWKKVKKRYRFLMRHKGVTIIVIFI 73
Query: 255 LLLI 258
LLLI
Sbjct: 74 LLLI 77
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 28.5 bits (64), Expect = 5.6
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 67 ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA--IPPL 124
L S + + + +N + A +G + Y P++ + W+ +G+ +PPL
Sbjct: 62 ILLFSTSSLNLTWTTINLVEAVVGAVLLRKLLPWYNPLQNL---ADWLRLALGSAIVPPL 118
Query: 125 MGWAA 129
+G
Sbjct: 119 LGGVL 123
>gnl|CDD|182922 PRK11040, PRK11040, peptidase PmbA; Provisional.
Length = 446
Score = 28.2 bits (63), Expect = 6.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 14 SSFLICSLGTGLVSSAANAVNQYH------EVPFDSQMSRTKNRVLVR-GVL 58
S+FL+ SLG ++ H PFDS+ RT+ R +++ GVL
Sbjct: 269 STFLLDSLGKQILPEWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGVL 320
>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 27.8 bits (62), Expect = 7.3
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 33 VNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLF 92
VNQ + D + RT +RVL +LS ++ S ++ + +N L +L +
Sbjct: 66 VNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWL-LNPLCFSLAVL 124
Query: 93 NMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAA 129
+ +L +Y KR++ W+ +V + LM + A
Sbjct: 125 STLLMI-IYPYTKRVTFLCHWILGLVYYLAILMNFFA 160
>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4
12-hydroxydehydrogenase/15-oxo-prostaglandin
13-reductase. Leukotriene B4 12-hydroxydehydrogenase is
an NADP-dependent enzyme of arachidonic acid metabolism,
responsible for converting leukotriene B4 to the much
less active metabolite 12-oxo-leukotriene B4. The BRENDA
database lists leukotriene B4 12-hydroxydehydrogenase as
one of the synonyms of 2-alkenal reductase (EC
1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin
13-reductase.
Length = 325
Score = 27.3 bits (60), Expect = 9.8
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 70 SSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMG 126
S A GT G+ GLTA GL + T M ++ A VGSVVG I L G
Sbjct: 113 SLALGTV----GMPGLTAYFGLLEICGVKGGETVM--VNAAAGAVGSVVGQIAKLKG 163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.410
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,600,496
Number of extensions: 1482166
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1493
Number of HSP's successfully gapped: 86
Length of query: 306
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 209
Effective length of database: 6,635,264
Effective search space: 1386770176
Effective search space used: 1386770176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)