RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13659
(306 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 5e-06
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 64/215 (29%)
Query: 94 MVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQ- 152
+ ++ TP + S+ ++ +P T + S A + L TW
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRLSIIAESIRDGLATWDN 346
Query: 153 FPHFN--------ALSWN-LRPDYSRAGYRMMAVTNPD-------LCRL----------- 185
+ H N S N L P R + ++V P L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 186 -------TSL--------RYTVALLVVSAAGPLLDVTNV---------------WFALES 215
SL ++ + + L + + L
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 216 IPLNAYF-TYLAYKFYKESDSSSSRKLFRFSLLHL 249
L+ YF +++ + K + LFR L
Sbjct: 467 PYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLDF 500
Score = 34.1 bits (77), Expect = 0.061
Identities = 56/339 (16%), Positives = 93/339 (27%), Gaps = 104/339 (30%)
Query: 25 LVSSAANAVNQ--YHEVPFDSQMSRTKNRVLV---RGV--LSPLHALGFALASSAAGTAM 77
L+S Q + Q R N V V L P L AL
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-- 151
Query: 78 LYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANT---WVGSVVGAIPPLMGWAACTGSL 134
++G+ LG + V K + W+ + ++
Sbjct: 152 -NVLIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLN---------LKNCNSPETV 198
Query: 135 LDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLR-YTVA 193
L+ +L + + +W R D+S + +L RL + Y
Sbjct: 199 LE----------ML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 194 LLVVSAAGPLLDVTNVW-------FALES----------------------IPLNAY--- 221
LLV L NV F L I L+ +
Sbjct: 247 LLV-------LL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 222 FT------YLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINK----KHWASHGSDAA 271
T L K+ R++ + L +++ + + +W D
Sbjct: 298 LTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKL 355
Query: 272 KDSIEVSV---QPSI-----DSL-ITPPN----PATLGL 297
IE S+ +P+ D L + PP+ L L
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-04
Identities = 60/353 (16%), Positives = 96/353 (27%), Gaps = 134/353 (37%)
Query: 6 MAPAPFEWSSF-LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHAL 64
+ P S LI G++ A Y + + R ++G L
Sbjct: 231 LLSIPI---SCPLI-----GVIQLA-----HYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 65 GFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGS-VVGAIPP 123
A+A + + F V+ A LF ++G A P
Sbjct: 278 VTAVAIAETDSWE-SFFVSVRKAITVLF--------------------FIGVRCYEAYPN 316
Query: 124 LMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLC 183
+ L+ + G P M++++N
Sbjct: 317 TSLPPSILEDSLENNEGV-----------------------PSP------MLSISNLTQE 347
Query: 184 RLTS-LRYT-----------VAL------LVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
++ + T ++L LVVS GP + + L
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKA--------- 396
Query: 226 AYKFYKESDSS----SSRKLFRFSLLHLP-------ALM------ILLLINKKHWASHGS 268
K D S S RKL +FS LP L+ I + K + + +
Sbjct: 397 --KAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 269 DAA---------KD--SIEVSVQPSI-DSLITPP--------NPATLGLKLGP 301
D D + S+ I D +I P AT L GP
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 39.3 bits (91), Expect = 0.002
Identities = 28/154 (18%), Positives = 40/154 (25%), Gaps = 65/154 (42%)
Query: 115 GS-VVGAIPPLMG-------------WAACTGSLLDGSGGAFLLSAILFTWQFP-----H 155
GS G MG W D G F + I+ P H
Sbjct: 1625 GSQEQG-----MGMDLYKTSKAAQDVWNRADNHFKDTYG--FSILDIVI--NNPVNLTIH 1675
Query: 156 FNAL-SWNLRPDYSRAGYRMMAVTNP----------------------DLCRLTSLRYT- 191
F +R +YS + + L T +T
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ--FTQ 1733
Query: 192 VALLVVSAAGPLLDVTNVWFALES---IPLNAYF 222
AL ++ A + L+S IP +A F
Sbjct: 1734 PALTLMEKA--------AFEDLKSKGLIPADATF 1759
Score = 31.6 bits (71), Expect = 0.39
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 29/107 (27%)
Query: 119 GAIPPLMGWAACTG-SL-----LDGSGGAFLLSA---ILF----TWQFPHFNALSWNLRP 165
G IP A G SL L + + ++F T Q A+ R
Sbjct: 1751 GLIPA---DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ----VAVP---RD 1800
Query: 166 DYSRAGYRMMAVTNPDLCRLT----SLRYTVALLVVSAAGPLLDVTN 208
+ R+ Y M+A+ NP + +L+Y V V G L+++ N
Sbjct: 1801 ELGRSNYGMIAI-NPGRVAASFSQEALQYVVE-RVGKRTGWLVEIVN 1845
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 32.5 bits (73), Expect = 0.18
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 89 LGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGW------AACTGSLLDGSGGAF 142
+ + M L+ + I+ WV S++ P+MGW ++C+ L
Sbjct: 162 ITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYI 221
Query: 143 LLSAILFTW 151
L +FT
Sbjct: 222 LFCTTVFTL 230
>1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous
protein, LIPO-polysaccharide binding, bacteriophage
structural protein; HET: CIT; 1.5A {Bacteriophage T4}
SCOP: d.231.1.1
Length = 198
Score = 30.1 bits (67), Expect = 0.67
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 114 VGSVV---GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
VG+++ P W C G + S S I +
Sbjct: 14 VGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRY 54
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 30.1 bits (67), Expect = 0.87
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 97 YTSVYTPMK-RISIANTWVGSVVGAIPPLMGW 127
Y + T + + IA WV S + P++GW
Sbjct: 127 YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGW 158
>2qtp_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.10A {Silicibacter pomeroyi dss-3} SCOP:
d.79.9.1
Length = 194
Score = 29.1 bits (65), Expect = 1.2
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 98 TSVYTPMKRISIA----NTWVGSVVGAIPPLMGWAACTGSLL 135
+ P ++ N + G V + LM A G+LL
Sbjct: 21 REISPPTRKAVAVAVIENPFAGRYVEDLTELMDTGAELGALL 62
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 29.3 bits (65), Expect = 1.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 97 YTSVYTPMK-RISIANTWVGSVVGAIPPLMGW 127
Y + T + + IA WV S + P++GW
Sbjct: 137 YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGW 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.5
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 24/42 (57%)
Query: 213 LESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMI 254
L++ + K Y DS+ PAL I
Sbjct: 25 LQA----------SLKLY-ADDSA-------------PALAI 42
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 29.0 bits (64), Expect = 2.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 107 ISIANTWVGSVVGAIPPLMGW 127
+ I WV + + P L G+
Sbjct: 161 LMITAVWVLAFAVSCPLLFGF 181
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 106 RISIANTWVGSVVGAIPPLMGW 127
+ +A TWV ++ A PPL+GW
Sbjct: 155 IMGVAFTWVMALACAAPPLVGW 176
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 28.1 bits (62), Expect = 4.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 106 RISIANTWVGSVVGAIPPLMGWAACTG 132
+ IA WV S + P ++ W G
Sbjct: 141 GMMIAAAWVLSFILWAPAILFWQFIVG 167
>1h6w_A Bacteriophage T4 short tail fibre; structural protein, gene product
12, adhesin, fibrous protein; 1.9A {Bacteriophage T4}
SCOP: b.108.1.1 d.231.1.1
Length = 312
Score = 27.8 bits (60), Expect = 4.9
Identities = 12/84 (14%), Positives = 19/84 (22%)
Query: 68 LASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGW 127
L + T T + + V +I + P W
Sbjct: 216 LRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAW 275
Query: 128 AACTGSLLDGSGGAFLLSAILFTW 151
C G + S S I +
Sbjct: 276 RFCHGGTVSASDCPLYASRIGTRY 299
>1pdi_A Short tail fiber protein; structural protein; 12.00A
{Enterobacteria phage T4} SCOP: i.19.1.1
Length = 278
Score = 27.6 bits (60), Expect = 6.0
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 114 VGSVV---GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
VG+++ P W C G + S S I +
Sbjct: 94 VGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRY 134
>3byq_A Uncharacterized protein DUF1185; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PG4; 1.70A {Bordetella bronchiseptica
RB50} SCOP: d.79.9.1
Length = 193
Score = 26.8 bits (59), Expect = 7.9
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 98 TSVYTPMKRISIA----NTWVGSVVGAIPPLMGWAACTGSLL 135
+ P+K + N + G + P M G+LL
Sbjct: 23 PAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLL 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.410
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,603,921
Number of extensions: 265712
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 23
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)