RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13659
         (306 letters)



>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre
           protein gp12 {Bacteriophage T4 [TaxId: 10665]}
          Length = 198

 Score = 29.9 bits (66), Expect = 0.27
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 114 VGSVV---GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQ 152
           VG+++       P   W  C G  +  S      S I   + 
Sbjct: 14  VGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYG 55


>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of
           short tail fibre protein gp12 {Bacteriophage T4 [TaxId:
           10665]}
          Length = 79

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 114 VGSVV---GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
           VG+++       P   W  C G  +  S      S I   +
Sbjct: 16  VGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRY 56


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 211 FALESIPLNAYFTYLAYKFYKESDSSS 237
           + ++S+    Y   LAY ++K +  +S
Sbjct: 139 WEIDSL---CYPIRLAYHYWKTTGDAS 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,091,525
Number of extensions: 47364
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)