Query psy1366
Match_columns 345
No_of_seqs 265 out of 2512
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:05:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480|consensus 100.0 1.9E-82 4.2E-87 613.8 29.5 332 3-345 118-486 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 1E-79 2.2E-84 615.7 36.0 329 3-345 90-427 (682)
3 KOG0482|consensus 100.0 1.5E-81 3.3E-86 593.5 12.9 323 11-345 150-483 (721)
4 KOG0478|consensus 100.0 6.4E-76 1.4E-80 572.3 19.8 326 7-345 229-570 (804)
5 KOG0477|consensus 100.0 5.1E-76 1.1E-80 566.7 14.3 323 11-344 261-589 (854)
6 KOG0481|consensus 100.0 5.3E-73 1.2E-77 536.0 23.9 329 10-345 129-472 (729)
7 KOG0479|consensus 100.0 3.9E-72 8.5E-77 536.5 24.0 329 7-344 108-441 (818)
8 smart00350 MCM minichromosome 100.0 2.9E-68 6.3E-73 531.7 36.1 327 8-345 3-344 (509)
9 PTZ00111 DNA replication licen 100.0 6E-67 1.3E-71 534.3 32.1 328 5-345 213-601 (915)
10 PF00493 MCM: MCM2/3/5 family 100.0 2.8E-43 6.2E-48 334.1 4.6 150 196-345 14-165 (331)
11 PF01078 Mg_chelatase: Magnesi 99.8 1.8E-20 3.8E-25 164.1 10.3 125 206-344 3-149 (206)
12 PRK13407 bchI magnesium chelat 99.7 9.8E-17 2.1E-21 151.8 11.1 126 206-344 8-171 (334)
13 COG0606 Predicted ATPase with 99.7 3.1E-17 6.6E-22 157.7 7.3 125 205-344 178-326 (490)
14 TIGR02030 BchI-ChlI magnesium 99.6 1.2E-15 2.7E-20 144.6 11.3 127 206-344 4-174 (337)
15 CHL00081 chlI Mg-protoporyphyr 99.6 9.1E-16 2E-20 145.6 8.4 127 206-344 17-187 (350)
16 TIGR02442 Cob-chelat-sub cobal 99.6 2.6E-15 5.5E-20 154.3 11.3 128 205-344 3-169 (633)
17 TIGR00368 Mg chelatase-related 99.6 1.5E-15 3.2E-20 151.1 8.7 126 205-344 191-338 (499)
18 TIGR02031 BchD-ChlD magnesium 99.6 1.2E-14 2.6E-19 147.8 10.3 121 212-344 1-127 (589)
19 PRK09862 putative ATP-dependen 99.5 9.1E-15 2E-19 145.0 7.1 125 206-344 191-337 (506)
20 PRK13531 regulatory ATPase Rav 99.5 3.2E-14 7E-19 139.0 9.6 129 198-344 12-148 (498)
21 PF05496 RuvB_N: Holliday junc 99.5 3.7E-14 8.1E-19 125.4 7.4 114 200-332 18-132 (233)
22 PF07726 AAA_3: ATPase family 99.4 2.1E-13 4.6E-18 110.3 7.2 90 241-333 1-94 (131)
23 COG1239 ChlI Mg-chelatase subu 99.4 3.6E-13 7.8E-18 128.2 9.0 129 204-344 15-187 (423)
24 COG0714 MoxR-like ATPases [Gen 99.4 7E-13 1.5E-17 126.3 10.3 125 198-336 16-147 (329)
25 PRK13406 bchD magnesium chelat 99.4 9.9E-13 2.1E-17 133.0 9.8 123 211-344 8-136 (584)
26 PRK05342 clpX ATP-dependent pr 99.3 7.5E-13 1.6E-17 129.0 4.8 137 198-334 63-220 (412)
27 COG3829 RocR Transcriptional r 99.3 2E-12 4.3E-17 126.3 7.3 114 202-331 241-370 (560)
28 PF07728 AAA_5: AAA domain (dy 99.3 1.5E-12 3.1E-17 108.3 5.3 98 241-338 1-102 (139)
29 TIGR02902 spore_lonB ATP-depen 99.3 1.2E-11 2.5E-16 124.8 11.8 118 204-333 63-207 (531)
30 PF00158 Sigma54_activat: Sigm 99.3 1E-12 2.2E-17 113.1 2.8 103 240-343 23-135 (168)
31 TIGR00382 clpX endopeptidase C 99.3 5.4E-12 1.2E-16 122.5 5.7 135 198-332 69-226 (413)
32 COG2255 RuvB Holliday junction 99.3 1.5E-11 3.2E-16 111.4 7.8 109 206-333 26-135 (332)
33 TIGR02640 gas_vesic_GvpN gas v 99.2 3.5E-11 7.6E-16 111.0 7.9 95 240-334 22-138 (262)
34 TIGR01650 PD_CobS cobaltochela 99.2 1.4E-10 3E-15 108.9 10.7 96 241-336 66-170 (327)
35 CHL00181 cbbX CbbX; Provisiona 99.1 3.3E-11 7.2E-16 112.4 4.6 123 198-328 15-158 (287)
36 COG0466 Lon ATP-dependent Lon 99.1 2.7E-11 5.9E-16 121.5 4.0 118 200-326 317-446 (782)
37 COG3604 FhlA Transcriptional r 99.1 1.6E-10 3.4E-15 111.9 7.7 93 238-331 245-347 (550)
38 COG2256 MGS1 ATPase related to 99.1 8.2E-11 1.8E-15 111.2 5.0 110 206-335 24-138 (436)
39 KOG2004|consensus 99.1 1.2E-10 2.6E-15 116.5 5.9 115 202-326 407-534 (906)
40 COG1219 ClpX ATP-dependent pro 99.1 4.7E-11 1E-15 109.5 2.5 137 198-334 53-209 (408)
41 COG2204 AtoC Response regulato 99.1 1.7E-10 3.8E-15 112.6 6.1 87 239-332 164-266 (464)
42 PHA02244 ATPase-like protein 99.0 5.3E-10 1.1E-14 106.3 7.9 91 240-333 120-212 (383)
43 PRK10787 DNA-binding ATP-depen 99.0 2.7E-10 5.8E-15 119.4 5.7 118 200-327 316-446 (784)
44 TIGR00764 lon_rel lon-related 99.0 9.9E-10 2.2E-14 112.3 9.5 44 292-335 208-251 (608)
45 TIGR02903 spore_lon_C ATP-depe 99.0 1.3E-09 2.8E-14 111.8 9.8 121 201-333 149-297 (615)
46 PF07724 AAA_2: AAA domain (Cd 99.0 9.8E-11 2.1E-15 101.0 1.1 92 240-334 4-112 (171)
47 TIGR02974 phageshock_pspF psp 99.0 8.8E-10 1.9E-14 104.9 7.7 91 240-331 23-123 (329)
48 PRK11034 clpA ATP-dependent Cl 99.0 1.2E-09 2.6E-14 113.9 8.2 133 198-333 450-589 (758)
49 PRK13765 ATP-dependent proteas 99.0 1.9E-09 4.2E-14 110.1 8.8 42 292-333 217-258 (637)
50 PRK15424 propionate catabolism 98.9 1.4E-09 2.9E-14 109.4 7.4 89 240-331 243-352 (538)
51 TIGR02639 ClpA ATP-dependent C 98.9 2.5E-09 5.5E-14 112.0 9.2 133 198-333 446-585 (731)
52 TIGR02880 cbbX_cfxQ probable R 98.9 6.8E-10 1.5E-14 103.6 4.2 123 199-328 15-157 (284)
53 COG1221 PspF Transcriptional r 98.9 1.4E-09 3E-14 104.6 6.1 121 199-331 71-203 (403)
54 TIGR02881 spore_V_K stage V sp 98.9 6.1E-10 1.3E-14 102.7 3.6 116 207-328 7-140 (261)
55 TIGR02329 propionate_PrpR prop 98.9 3.3E-09 7.1E-14 106.6 7.6 89 240-331 236-337 (526)
56 PRK11388 DNA-binding transcrip 98.9 3.9E-09 8.5E-14 109.2 7.8 115 204-331 323-446 (638)
57 PRK00080 ruvB Holliday junctio 98.9 4.3E-09 9.4E-14 100.2 7.1 109 204-331 23-132 (328)
58 TIGR00763 lon ATP-dependent pr 98.9 2.6E-09 5.7E-14 112.6 5.8 119 199-327 313-444 (775)
59 TIGR00635 ruvB Holliday juncti 98.8 5.7E-09 1.2E-13 98.2 7.5 106 206-330 4-110 (305)
60 PRK11608 pspF phage shock prot 98.8 6.7E-09 1.4E-13 98.8 7.7 91 240-331 30-130 (326)
61 PRK05201 hslU ATP-dependent pr 98.8 5E-09 1.1E-13 101.1 6.1 71 198-268 7-79 (443)
62 TIGR01817 nifA Nif-specific re 98.8 9E-09 1.9E-13 104.4 7.6 91 240-331 220-320 (534)
63 KOG0989|consensus 98.8 7.1E-09 1.5E-13 95.0 6.1 108 206-327 36-155 (346)
64 CHL00095 clpC Clp protease ATP 98.8 2.8E-08 6.1E-13 105.4 10.5 134 198-334 501-644 (821)
65 PLN03025 replication factor C 98.8 4.8E-09 1E-13 99.6 4.2 108 206-327 13-125 (319)
66 PRK13342 recombination factor 98.8 1.1E-08 2.3E-13 100.6 6.7 110 206-333 12-124 (413)
67 KOG0745|consensus 98.8 2.6E-09 5.6E-14 101.7 1.8 99 239-337 226-341 (564)
68 TIGR03345 VI_ClpV1 type VI sec 98.7 4.3E-08 9.3E-13 104.0 10.5 133 198-333 558-700 (852)
69 PRK14962 DNA polymerase III su 98.7 1.5E-08 3.3E-13 100.6 6.6 117 204-331 12-149 (472)
70 PRK15429 formate hydrogenlyase 98.7 2.7E-08 5.8E-13 103.8 8.6 91 240-331 400-500 (686)
71 TIGR03346 chaperone_ClpB ATP-d 98.7 5.4E-08 1.2E-12 103.7 10.4 133 198-333 557-699 (852)
72 cd00009 AAA The AAA+ (ATPases 98.7 1.5E-08 3.2E-13 83.2 4.4 105 210-329 2-112 (151)
73 PRK05022 anaerobic nitric oxid 98.7 3.1E-08 6.7E-13 99.8 7.3 91 240-331 211-311 (509)
74 smart00763 AAA_PrkA PrkA AAA d 98.7 6.9E-08 1.5E-12 91.8 9.2 43 294-336 229-271 (361)
75 COG1223 Predicted ATPase (AAA+ 98.7 4.2E-09 9.1E-14 94.5 0.5 123 204-337 119-263 (368)
76 COG0542 clpA ATP-binding subun 98.7 7.4E-08 1.6E-12 99.3 9.3 132 198-336 483-628 (786)
77 PRK10820 DNA-binding transcrip 98.7 2.8E-08 6.1E-13 100.3 5.9 91 240-330 228-327 (520)
78 PRK10865 protein disaggregatio 98.6 7.9E-08 1.7E-12 102.2 8.5 153 174-331 531-700 (857)
79 COG3283 TyrR Transcriptional r 98.6 7E-08 1.5E-12 90.2 6.5 101 212-331 215-323 (511)
80 KOG2028|consensus 98.6 1.2E-08 2.5E-13 95.6 1.3 112 206-336 138-257 (554)
81 PRK14961 DNA polymerase III su 98.6 1E-07 2.3E-12 92.0 7.0 109 205-327 15-145 (363)
82 PRK13341 recombination factor 98.6 3.9E-08 8.4E-13 102.2 3.6 110 205-333 27-141 (725)
83 TIGR02915 PEP_resp_reg putativ 98.6 9.5E-08 2.1E-12 94.6 6.2 91 240-331 163-263 (445)
84 PRK14956 DNA polymerase III su 98.6 1.2E-07 2.5E-12 93.6 6.7 114 203-327 15-147 (484)
85 PRK10923 glnG nitrogen regulat 98.5 1.5E-07 3.3E-12 93.8 6.6 92 240-332 162-263 (469)
86 PRK14949 DNA polymerase III su 98.5 1.9E-07 4E-12 97.6 7.3 108 205-327 15-145 (944)
87 PF00004 AAA: ATPase family as 98.5 1.3E-08 2.8E-13 82.9 -1.4 80 242-327 1-95 (132)
88 PRK14958 DNA polymerase III su 98.5 2.3E-07 4.9E-12 93.2 7.0 112 205-327 15-145 (509)
89 KOG0991|consensus 98.5 4.4E-08 9.5E-13 86.7 1.7 109 204-326 25-138 (333)
90 PRK11361 acetoacetate metaboli 98.5 1.8E-07 3.9E-12 92.9 6.2 92 240-331 167-267 (457)
91 PRK14960 DNA polymerase III su 98.5 3E-07 6.5E-12 93.4 7.5 112 205-327 14-144 (702)
92 COG1222 RPT1 ATP-dependent 26S 98.5 3.9E-08 8.4E-13 92.0 0.6 80 241-327 187-281 (406)
93 COG3284 AcoR Transcriptional a 98.5 9E-08 2E-12 95.5 3.1 90 237-331 334-437 (606)
94 KOG0739|consensus 98.5 7.9E-08 1.7E-12 87.9 2.4 95 207-313 134-237 (439)
95 PF14532 Sigma54_activ_2: Sigm 98.5 1.7E-07 3.8E-12 77.8 4.3 73 240-328 22-96 (138)
96 KOG1051|consensus 98.4 4.3E-07 9.4E-12 94.9 7.7 129 198-334 554-693 (898)
97 PRK15115 response regulator Gl 98.4 3.9E-07 8.4E-12 90.3 6.4 91 240-331 158-258 (444)
98 PRK14955 DNA polymerase III su 98.4 2.4E-07 5.1E-12 90.6 4.7 110 206-327 16-153 (397)
99 PRK14964 DNA polymerase III su 98.4 4.1E-07 8.9E-12 90.4 6.2 112 205-327 12-142 (491)
100 PRK07003 DNA polymerase III su 98.4 4.7E-07 1E-11 93.0 6.7 111 206-327 16-145 (830)
101 PRK14957 DNA polymerase III su 98.4 4.2E-07 9.1E-12 91.6 6.2 112 205-327 15-145 (546)
102 PRK12402 replication factor C 98.4 6.2E-07 1.4E-11 85.3 6.9 109 205-327 14-151 (337)
103 KOG0737|consensus 98.4 1.2E-07 2.5E-12 89.1 1.8 110 205-325 91-210 (386)
104 PRK05896 DNA polymerase III su 98.4 5.9E-07 1.3E-11 90.9 6.8 115 204-332 14-153 (605)
105 PRK07940 DNA polymerase III su 98.4 4.5E-07 9.6E-12 88.2 5.7 123 205-332 4-151 (394)
106 PRK06645 DNA polymerase III su 98.4 1E-06 2.2E-11 88.2 7.9 113 204-327 19-154 (507)
107 PRK14959 DNA polymerase III su 98.4 6E-07 1.3E-11 91.3 6.4 112 205-327 15-145 (624)
108 TIGR01818 ntrC nitrogen regula 98.3 7.5E-07 1.6E-11 88.7 6.8 92 240-332 158-259 (463)
109 PRK12323 DNA polymerase III su 98.3 5.5E-07 1.2E-11 91.4 5.8 109 205-327 15-150 (700)
110 TIGR02397 dnaX_nterm DNA polym 98.3 1.8E-06 3.9E-11 82.9 8.9 113 204-327 12-143 (355)
111 PRK14950 DNA polymerase III su 98.3 7.3E-07 1.6E-11 91.3 6.4 111 205-327 15-146 (585)
112 PRK14969 DNA polymerase III su 98.3 9.8E-07 2.1E-11 89.1 7.2 108 206-327 16-145 (527)
113 KOG0733|consensus 98.3 1.3E-07 2.8E-12 93.7 0.5 87 237-327 221-307 (802)
114 PRK07994 DNA polymerase III su 98.3 7.1E-07 1.5E-11 91.4 5.6 109 204-327 14-145 (647)
115 PRK03992 proteasome-activating 98.3 1.9E-07 4.2E-12 91.0 1.1 29 240-268 166-194 (389)
116 PRK07764 DNA polymerase III su 98.3 1.8E-06 3.8E-11 91.1 8.2 109 206-327 15-146 (824)
117 PRK10365 transcriptional regul 98.3 1E-06 2.2E-11 87.1 6.2 91 240-331 163-263 (441)
118 PRK08691 DNA polymerase III su 98.3 1.4E-06 2.9E-11 89.3 7.1 110 206-327 16-145 (709)
119 PRK14970 DNA polymerase III su 98.3 2.3E-06 5.1E-11 82.7 8.5 107 206-327 17-134 (367)
120 KOG0734|consensus 98.3 2.6E-07 5.7E-12 90.3 1.8 102 204-313 302-408 (752)
121 KOG0738|consensus 98.3 2.9E-07 6.2E-12 87.0 1.9 64 206-270 212-276 (491)
122 PRK00440 rfc replication facto 98.3 3.2E-06 6.9E-11 79.7 8.9 106 207-327 18-128 (319)
123 PRK14952 DNA polymerase III su 98.3 2.1E-06 4.6E-11 87.2 8.0 110 205-327 12-144 (584)
124 PRK14965 DNA polymerase III su 98.3 1.5E-06 3.2E-11 88.8 6.9 111 206-327 16-145 (576)
125 PRK08451 DNA polymerase III su 98.3 2.3E-06 5E-11 86.0 8.0 110 205-327 13-143 (535)
126 PRK05563 DNA polymerase III su 98.3 1.6E-06 3.4E-11 88.3 6.9 112 205-327 15-145 (559)
127 CHL00195 ycf46 Ycf46; Provisio 98.2 1.8E-07 4E-12 93.2 -0.2 63 206-270 228-290 (489)
128 PHA02544 44 clamp loader, smal 98.2 8.5E-07 1.9E-11 83.8 4.4 103 206-327 21-127 (316)
129 KOG0736|consensus 98.2 1.6E-06 3.5E-11 88.1 6.3 102 207-315 673-778 (953)
130 PRK14948 DNA polymerase III su 98.2 1.9E-06 4.2E-11 88.4 7.1 112 204-327 14-147 (620)
131 TIGR02639 ClpA ATP-dependent C 98.2 1.8E-06 4E-11 90.7 6.3 111 206-333 182-315 (731)
132 PRK14963 DNA polymerase III su 98.2 2.3E-06 5.1E-11 85.8 6.6 110 206-327 14-142 (504)
133 COG4650 RtcR Sigma54-dependent 98.2 1.9E-06 4E-11 79.0 5.3 93 237-330 206-311 (531)
134 PRK11331 5-methylcytosine-spec 98.2 4.2E-06 9.2E-11 81.9 7.8 105 206-328 175-300 (459)
135 PRK07133 DNA polymerase III su 98.2 4E-06 8.6E-11 86.6 7.8 111 206-327 18-144 (725)
136 PRK06647 DNA polymerase III su 98.2 5.7E-06 1.2E-10 84.1 8.7 110 206-327 16-145 (563)
137 PRK14951 DNA polymerase III su 98.2 1.9E-06 4.1E-11 88.0 5.2 108 206-327 16-150 (618)
138 PRK14954 DNA polymerase III su 98.2 1.7E-06 3.6E-11 88.6 4.7 110 205-327 15-153 (620)
139 PRK06305 DNA polymerase III su 98.1 5.5E-06 1.2E-10 82.2 7.7 110 206-327 17-147 (451)
140 TIGR01242 26Sp45 26S proteasom 98.1 4.6E-07 1E-11 87.6 0.0 29 240-268 157-185 (364)
141 PRK04195 replication factor C 98.1 2.8E-06 6E-11 85.2 5.0 111 206-328 14-129 (482)
142 TIGR00390 hslU ATP-dependent p 98.1 4.6E-06 1E-10 80.8 5.9 69 199-268 5-76 (441)
143 CHL00176 ftsH cell division pr 98.1 1.3E-06 2.9E-11 89.8 1.9 63 205-269 182-246 (638)
144 PRK09111 DNA polymerase III su 98.1 1E-05 2.2E-10 82.8 8.2 111 205-327 23-158 (598)
145 PRK09112 DNA polymerase III su 98.1 3.7E-06 8.1E-11 80.7 4.6 111 205-327 22-167 (351)
146 smart00382 AAA ATPases associa 98.1 2.3E-06 4.9E-11 69.3 2.6 83 240-322 3-99 (148)
147 PTZ00454 26S protease regulato 98.1 1.2E-06 2.6E-11 85.4 1.2 60 207-268 146-208 (398)
148 KOG0727|consensus 98.1 8.4E-07 1.8E-11 79.6 -0.0 81 240-327 190-285 (408)
149 TIGR01241 FtsH_fam ATP-depende 98.0 1.2E-06 2.7E-11 88.0 1.0 30 240-269 89-118 (495)
150 PRK14953 DNA polymerase III su 98.0 8.7E-06 1.9E-10 81.4 6.7 114 204-328 14-146 (486)
151 PRK05564 DNA polymerase III su 98.0 1.9E-05 4E-10 74.8 8.7 112 206-332 4-127 (313)
152 PRK08903 DnaA regulatory inact 98.0 1.3E-05 2.7E-10 72.2 6.8 68 241-326 44-115 (227)
153 KOG0652|consensus 98.0 1.9E-06 4.2E-11 77.6 1.2 83 237-327 203-301 (424)
154 COG0470 HolB ATPase involved i 98.0 4.2E-06 9E-11 79.0 3.3 86 240-328 24-136 (325)
155 TIGR03345 VI_ClpV1 type VI sec 98.0 3.1E-06 6.8E-11 90.0 2.5 113 206-335 187-322 (852)
156 PRK07471 DNA polymerase III su 98.0 7.7E-06 1.7E-10 78.9 4.7 48 205-263 18-65 (365)
157 TIGR01243 CDC48 AAA family ATP 98.0 4E-06 8.7E-11 88.3 2.9 62 207-268 454-516 (733)
158 PTZ00361 26 proteosome regulat 97.9 1.8E-06 3.8E-11 85.0 -0.1 29 240-268 218-246 (438)
159 TIGR03420 DnaA_homol_Hda DnaA 97.9 9.9E-06 2.2E-10 72.6 4.7 73 240-326 39-117 (226)
160 KOG0742|consensus 97.9 1.1E-05 2.4E-10 77.0 4.8 78 241-325 386-476 (630)
161 KOG0735|consensus 97.9 4E-06 8.6E-11 84.7 1.7 114 207-326 668-796 (952)
162 COG1220 HslU ATP-dependent pro 97.9 7.2E-06 1.6E-10 76.5 3.3 68 199-267 8-78 (444)
163 TIGR02688 conserved hypothetic 97.9 5.6E-06 1.2E-10 80.2 2.2 132 179-334 160-297 (449)
164 COG0464 SpoVK ATPases of the A 97.9 3.1E-06 6.6E-11 85.2 0.2 109 207-326 243-371 (494)
165 PF13177 DNA_pol3_delta2: DNA 97.9 8.2E-06 1.8E-10 69.8 2.7 107 210-328 1-129 (162)
166 PLN00020 ribulose bisphosphate 97.8 2.2E-06 4.8E-11 81.5 -1.4 33 238-270 147-179 (413)
167 KOG0733|consensus 97.8 8.4E-06 1.8E-10 81.2 2.5 60 207-268 512-574 (802)
168 PF13337 Lon_2: Putative ATP-d 97.8 9.6E-05 2.1E-09 72.1 9.7 133 179-335 159-296 (457)
169 PRK14971 DNA polymerase III su 97.8 2E-05 4.3E-10 81.0 5.3 113 204-327 15-147 (614)
170 PRK07399 DNA polymerase III su 97.8 5.8E-05 1.3E-09 71.4 8.0 111 205-327 3-150 (314)
171 KOG0728|consensus 97.8 3.7E-06 8E-11 75.4 -0.2 80 241-327 183-277 (404)
172 COG0465 HflB ATP-dependent Zn 97.8 7.3E-06 1.6E-10 82.7 1.7 104 204-315 148-256 (596)
173 PRK10865 protein disaggregatio 97.8 1.3E-05 2.8E-10 85.5 3.7 112 207-335 179-313 (857)
174 CHL00095 clpC Clp protease ATP 97.8 1.2E-05 2.6E-10 85.6 3.1 111 207-334 180-312 (821)
175 KOG0731|consensus 97.8 1E-05 2.2E-10 83.3 2.3 65 204-270 309-375 (774)
176 PRK11034 clpA ATP-dependent Cl 97.8 3.1E-05 6.8E-10 81.2 5.8 115 204-336 185-322 (758)
177 TIGR03689 pup_AAA proteasome A 97.8 2.9E-05 6.3E-10 77.7 5.3 29 240-268 217-245 (512)
178 TIGR01243 CDC48 AAA family ATP 97.8 1.6E-05 3.4E-10 83.8 3.5 29 240-268 213-241 (733)
179 KOG0744|consensus 97.7 1.1E-05 2.3E-10 74.9 1.5 55 213-272 154-208 (423)
180 PRK08058 DNA polymerase III su 97.7 2.1E-05 4.6E-10 75.0 3.4 108 207-327 6-136 (329)
181 PF03266 NTPase_1: NTPase; In 97.7 0.0001 2.2E-09 63.4 7.2 90 241-330 1-127 (168)
182 KOG0730|consensus 97.7 5.3E-06 1.1E-10 83.3 -1.0 61 206-268 434-497 (693)
183 KOG0743|consensus 97.7 1.9E-05 4.1E-10 76.4 2.5 96 205-313 200-298 (457)
184 PRK06893 DNA replication initi 97.7 7.5E-05 1.6E-09 67.5 5.8 70 241-325 41-117 (229)
185 TIGR03346 chaperone_ClpB ATP-d 97.7 2.7E-05 5.8E-10 83.3 3.2 113 207-336 174-309 (852)
186 PHA01747 putative ATP-dependen 97.7 0.00033 7.3E-09 66.4 10.0 88 238-335 189-280 (425)
187 COG1618 Predicted nucleotide k 97.6 0.00019 4.2E-09 60.4 6.7 27 239-265 5-31 (179)
188 TIGR00678 holB DNA polymerase 97.5 0.00016 3.5E-09 63.1 5.7 86 241-327 16-122 (188)
189 KOG0726|consensus 97.5 1.2E-05 2.7E-10 73.6 -1.6 81 240-327 220-315 (440)
190 KOG0740|consensus 97.5 2.4E-05 5.2E-10 75.9 0.3 101 205-313 152-257 (428)
191 KOG0729|consensus 97.5 2.3E-05 5E-10 71.0 -0.3 79 241-327 213-307 (435)
192 PF00910 RNA_helicase: RNA hel 97.5 0.00014 3E-09 57.7 4.1 84 242-338 1-90 (107)
193 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00045 9.7E-09 62.5 7.9 73 241-323 34-106 (231)
194 COG2812 DnaX DNA polymerase II 97.5 6.9E-05 1.5E-09 74.7 2.9 114 203-327 13-145 (515)
195 PRK12377 putative replication 97.4 0.00012 2.6E-09 66.9 4.0 84 240-328 102-192 (248)
196 PRK06620 hypothetical protein; 97.4 0.00039 8.4E-09 62.2 6.7 24 241-264 46-69 (214)
197 CHL00206 ycf2 Ycf2; Provisiona 97.4 0.00013 2.8E-09 81.3 4.1 31 240-270 1631-1661(2281)
198 PRK08084 DNA replication initi 97.3 0.00015 3.2E-09 65.9 3.3 23 241-263 47-69 (235)
199 PRK06526 transposase; Provisio 97.3 2.4E-05 5.3E-10 71.8 -2.0 83 240-327 99-187 (254)
200 PF12775 AAA_7: P-loop contain 97.3 0.00021 4.7E-09 66.2 4.1 86 240-329 34-134 (272)
201 PRK00411 cdc6 cell division co 97.3 0.00014 3E-09 70.9 3.0 52 204-263 27-79 (394)
202 PRK08116 hypothetical protein; 97.3 6.6E-05 1.4E-09 69.5 0.6 86 240-328 115-207 (268)
203 KOG0651|consensus 97.3 9.2E-05 2E-09 68.5 1.4 82 240-327 167-262 (388)
204 PF06309 Torsin: Torsin; Inte 97.3 0.00037 7.9E-09 56.6 4.6 61 198-263 17-77 (127)
205 COG3854 SpoIIIAA ncharacterize 97.3 0.00045 9.8E-09 61.6 5.5 89 240-330 138-245 (308)
206 TIGR02653 Lon_rel_chp conserve 97.3 0.001 2.3E-08 67.6 8.6 132 179-334 167-303 (675)
207 PRK15455 PrkA family serine pr 97.2 0.00037 8E-09 70.2 4.8 42 294-335 248-289 (644)
208 PRK10733 hflB ATP-dependent me 97.2 0.0001 2.2E-09 76.4 0.7 29 241-269 187-215 (644)
209 KOG2170|consensus 97.2 0.00017 3.6E-09 66.5 1.9 120 198-326 74-203 (344)
210 KOG0990|consensus 97.2 8E-05 1.7E-09 69.1 -0.4 90 240-332 63-162 (360)
211 PRK05707 DNA polymerase III su 97.2 0.00023 4.9E-09 67.8 2.6 85 240-327 23-132 (328)
212 PF13401 AAA_22: AAA domain; P 97.2 5.3E-05 1.1E-09 61.6 -1.5 98 239-336 4-123 (131)
213 PRK08181 transposase; Validate 97.2 3.3E-05 7.1E-10 71.4 -3.1 81 240-327 107-195 (269)
214 PTZ00112 origin recognition co 97.1 0.00063 1.4E-08 71.3 5.4 50 206-263 755-805 (1164)
215 PRK09183 transposase/IS protei 97.1 0.0012 2.6E-08 60.8 6.4 84 240-327 103-192 (259)
216 KOG1969|consensus 97.0 0.00095 2.1E-08 68.2 5.8 79 241-326 328-412 (877)
217 PRK08727 hypothetical protein; 97.0 0.0015 3.2E-08 59.2 6.1 72 241-327 43-121 (233)
218 PRK04296 thymidine kinase; Pro 97.0 0.0017 3.6E-08 57.0 6.0 37 302-338 79-115 (190)
219 PRK09087 hypothetical protein; 96.9 0.00094 2E-08 60.2 4.2 65 241-325 46-110 (226)
220 PF03215 Rad17: Rad17 cell cyc 96.8 0.0055 1.2E-07 61.9 9.0 87 241-327 47-158 (519)
221 PRK08769 DNA polymerase III su 96.8 0.0015 3.3E-08 61.9 4.5 106 211-327 9-139 (319)
222 PRK06871 DNA polymerase III su 96.8 0.0016 3.4E-08 61.9 4.6 105 212-327 8-133 (325)
223 COG5271 MDN1 AAA ATPase contai 96.7 0.0057 1.2E-07 67.7 8.8 97 240-336 889-991 (4600)
224 COG1484 DnaC DNA replication p 96.7 0.00016 3.4E-09 66.4 -2.4 83 241-328 107-196 (254)
225 TIGR00602 rad24 checkpoint pro 96.7 0.0014 3E-08 67.6 4.1 55 204-265 82-136 (637)
226 KOG3347|consensus 96.7 0.0014 2.9E-08 54.7 3.2 35 237-271 5-39 (176)
227 PRK07952 DNA replication prote 96.7 0.00033 7E-09 63.9 -0.5 82 241-328 101-191 (244)
228 PRK07993 DNA polymerase III su 96.6 0.0017 3.8E-08 62.0 3.9 88 237-327 22-134 (334)
229 PRK05642 DNA replication initi 96.6 0.0033 7.2E-08 56.9 5.5 22 241-262 47-68 (234)
230 PHA02774 E1; Provisional 96.6 0.0091 2E-07 60.4 8.9 77 241-334 436-513 (613)
231 PRK08699 DNA polymerase III su 96.6 0.0012 2.7E-08 62.7 2.6 29 300-328 112-140 (325)
232 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.3E-08 52.3 2.6 26 242-267 2-27 (121)
233 PF13173 AAA_14: AAA domain 96.6 0.0016 3.4E-08 53.2 2.6 81 241-328 4-87 (128)
234 PF13604 AAA_30: AAA domain; P 96.6 0.0039 8.4E-08 54.9 5.3 87 241-327 20-119 (196)
235 PRK12422 chromosomal replicati 96.5 0.0034 7.3E-08 62.3 5.1 23 241-263 143-165 (445)
236 PRK14532 adenylate kinase; Pro 96.5 0.003 6.4E-08 55.0 4.0 31 241-271 2-32 (188)
237 COG0542 clpA ATP-binding subun 96.5 0.0038 8.3E-08 65.1 5.2 113 203-333 168-303 (786)
238 PRK13947 shikimate kinase; Pro 96.4 0.0032 7E-08 53.7 3.9 31 241-271 3-33 (171)
239 PF05673 DUF815: Protein of un 96.4 0.0041 8.9E-08 56.3 4.5 46 207-263 28-76 (249)
240 PRK06090 DNA polymerase III su 96.4 0.0032 6.9E-08 59.7 3.9 105 212-327 9-134 (319)
241 PF01443 Viral_helicase1: Vira 96.4 0.011 2.3E-07 53.1 7.2 81 242-325 1-86 (234)
242 PF13671 AAA_33: AAA domain; P 96.4 0.0025 5.5E-08 52.5 2.8 23 242-264 2-24 (143)
243 PF09848 DUF2075: Uncharacteri 96.3 0.0012 2.7E-08 63.5 0.7 92 241-332 3-122 (352)
244 PF00308 Bac_DnaA: Bacterial d 96.3 0.004 8.7E-08 55.9 3.9 81 241-326 36-124 (219)
245 PF06068 TIP49: TIP49 C-termin 96.3 0.0034 7.4E-08 60.0 3.6 54 203-265 21-76 (398)
246 PRK08118 topology modulation p 96.2 0.0041 8.8E-08 53.4 3.5 28 241-268 3-30 (167)
247 TIGR02928 orc1/cdc6 family rep 96.2 0.0075 1.6E-07 58.0 5.7 50 206-263 15-64 (365)
248 cd01131 PilT Pilus retraction 96.2 0.011 2.5E-07 52.0 6.4 87 241-330 3-101 (198)
249 PRK03839 putative kinase; Prov 96.2 0.0043 9.4E-08 53.6 3.6 31 241-271 2-32 (180)
250 PF13245 AAA_19: Part of AAA d 96.2 0.0072 1.6E-07 44.8 4.3 23 241-263 12-35 (76)
251 TIGR01447 recD exodeoxyribonuc 96.2 0.031 6.7E-07 57.4 10.3 46 202-262 138-183 (586)
252 COG1067 LonB Predicted ATP-dep 96.2 0.0068 1.5E-07 62.5 5.5 92 240-331 132-255 (647)
253 KOG0730|consensus 96.2 0.0014 3E-08 66.3 0.3 99 236-339 215-331 (693)
254 cd00464 SK Shikimate kinase (S 96.2 0.0048 1E-07 51.5 3.5 29 241-269 1-29 (154)
255 PRK00131 aroK shikimate kinase 96.2 0.0052 1.1E-07 52.3 3.7 30 240-269 5-34 (175)
256 PHA00729 NTP-binding motif con 96.1 0.0038 8.2E-08 56.1 2.8 25 240-264 18-42 (226)
257 PRK14530 adenylate kinase; Pro 96.1 0.0057 1.2E-07 54.5 3.9 31 240-270 4-34 (215)
258 PF13191 AAA_16: AAA ATPase do 96.1 0.006 1.3E-07 52.3 3.9 25 240-264 25-49 (185)
259 KOG1808|consensus 96.1 0.0054 1.2E-07 69.0 4.3 97 240-336 441-543 (1856)
260 PRK00625 shikimate kinase; Pro 96.1 0.0059 1.3E-07 52.7 3.6 30 241-270 2-31 (173)
261 PF13086 AAA_11: AAA domain; P 96.1 0.0064 1.4E-07 53.9 3.9 21 242-262 20-40 (236)
262 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0069 1.5E-07 52.3 4.0 27 242-268 2-28 (183)
263 PRK05917 DNA polymerase III su 96.1 0.0067 1.4E-07 56.6 4.1 86 239-327 19-121 (290)
264 COG0563 Adk Adenylate kinase a 96.0 0.0058 1.3E-07 53.0 3.3 28 241-268 2-29 (178)
265 PRK14086 dnaA chromosomal repl 96.0 0.0072 1.6E-07 61.8 4.4 23 241-263 316-338 (617)
266 COG1224 TIP49 DNA helicase TIP 96.0 0.0082 1.8E-07 56.9 4.4 55 202-265 35-91 (450)
267 PHA02624 large T antigen; Prov 96.0 0.018 3.8E-07 58.6 7.0 25 241-265 433-457 (647)
268 PRK07261 topology modulation p 96.0 0.0078 1.7E-07 51.8 3.9 28 241-268 2-29 (171)
269 PRK13949 shikimate kinase; Pro 96.0 0.0072 1.6E-07 51.9 3.7 29 241-269 3-31 (169)
270 COG4178 ABC-type uncharacteriz 96.0 0.016 3.4E-07 59.0 6.5 29 299-327 531-560 (604)
271 PTZ00088 adenylate kinase 1; P 95.9 0.0083 1.8E-07 54.2 4.1 32 240-271 7-38 (229)
272 TIGR01448 recD_rel helicase, p 95.9 0.011 2.4E-07 62.3 5.5 86 241-328 340-443 (720)
273 PF13238 AAA_18: AAA domain; P 95.9 0.0056 1.2E-07 49.1 2.6 22 242-263 1-22 (129)
274 PRK14087 dnaA chromosomal repl 95.9 0.004 8.6E-08 62.0 2.0 23 241-263 143-165 (450)
275 cd01428 ADK Adenylate kinase ( 95.9 0.0092 2E-07 51.8 4.1 29 241-269 1-29 (194)
276 PRK06964 DNA polymerase III su 95.8 0.011 2.3E-07 56.7 4.5 28 300-327 131-158 (342)
277 PF00437 T2SE: Type II/IV secr 95.8 0.034 7.3E-07 51.3 7.8 89 240-331 128-224 (270)
278 KOG0741|consensus 95.8 0.0056 1.2E-07 60.7 2.5 24 241-264 258-281 (744)
279 PRK04132 replication factor C 95.8 0.0048 1E-07 65.4 2.0 84 240-327 565-656 (846)
280 PRK10078 ribose 1,5-bisphospho 95.7 0.01 2.3E-07 51.6 3.8 31 241-271 4-34 (186)
281 PRK14531 adenylate kinase; Pro 95.7 0.01 2.2E-07 51.5 3.7 28 241-268 4-31 (183)
282 cd02019 NK Nucleoside/nucleoti 95.7 0.0088 1.9E-07 43.2 2.8 22 242-263 2-23 (69)
283 PRK06217 hypothetical protein; 95.7 0.012 2.5E-07 51.1 4.0 30 241-270 3-32 (183)
284 PF01695 IstB_IS21: IstB-like 95.7 0.0058 1.2E-07 53.0 2.0 84 240-328 48-137 (178)
285 PRK05057 aroK shikimate kinase 95.7 0.013 2.8E-07 50.5 4.0 31 241-271 6-36 (172)
286 TIGR01313 therm_gnt_kin carboh 95.7 0.012 2.5E-07 49.9 3.7 25 242-266 1-25 (163)
287 PF06048 DUF927: Domain of unk 95.7 0.0091 2E-07 55.8 3.3 66 240-319 194-260 (286)
288 TIGR01360 aden_kin_iso1 adenyl 95.6 0.0097 2.1E-07 51.4 3.1 28 241-268 5-32 (188)
289 cd02021 GntK Gluconate kinase 95.6 0.012 2.7E-07 49.0 3.7 26 242-267 2-27 (150)
290 PRK06762 hypothetical protein; 95.6 0.013 2.7E-07 49.9 3.7 27 241-267 4-30 (166)
291 TIGR00150 HI0065_YjeE ATPase, 95.6 0.02 4.3E-07 47.2 4.6 25 241-265 24-48 (133)
292 PF05970 PIF1: PIF1-like helic 95.6 0.013 2.8E-07 56.8 4.1 87 240-326 23-127 (364)
293 PRK14526 adenylate kinase; Pro 95.6 0.013 2.8E-07 52.2 3.8 31 241-271 2-32 (211)
294 PRK14528 adenylate kinase; Pro 95.6 0.013 2.8E-07 51.1 3.7 30 241-270 3-32 (186)
295 PRK10875 recD exonuclease V su 95.6 0.016 3.4E-07 59.8 4.8 101 211-328 154-292 (615)
296 PRK13764 ATPase; Provisional 95.5 0.016 3.6E-07 59.3 4.9 72 241-313 259-336 (602)
297 cd00227 CPT Chloramphenicol (C 95.5 0.011 2.4E-07 50.8 3.1 27 241-267 4-30 (175)
298 KOG2035|consensus 95.5 0.067 1.4E-06 49.3 8.1 26 302-327 128-153 (351)
299 PF08477 Miro: Miro-like prote 95.5 0.011 2.4E-07 46.8 2.8 24 241-264 1-24 (119)
300 TIGR02768 TraA_Ti Ti-type conj 95.5 0.013 2.8E-07 61.9 4.0 83 241-326 370-464 (744)
301 cd01120 RecA-like_NTPases RecA 95.4 0.0098 2.1E-07 49.5 2.4 24 241-264 1-24 (165)
302 TIGR01351 adk adenylate kinase 95.4 0.015 3.3E-07 51.6 3.7 29 242-270 2-30 (210)
303 PF05272 VirE: Virulence-assoc 95.4 0.01 2.2E-07 52.4 2.6 78 239-335 52-129 (198)
304 PRK06921 hypothetical protein; 95.4 0.011 2.3E-07 54.8 2.7 24 241-264 119-142 (266)
305 cd01130 VirB11-like_ATPase Typ 95.4 0.026 5.6E-07 49.1 5.0 26 240-265 26-51 (186)
306 cd01129 PulE-GspE PulE/GspE Th 95.4 0.15 3.2E-06 47.1 10.3 88 241-330 82-176 (264)
307 PRK02496 adk adenylate kinase; 95.4 0.014 3.1E-07 50.5 3.4 28 241-268 3-30 (184)
308 PRK06835 DNA replication prote 95.4 0.01 2.3E-07 56.5 2.5 85 241-328 185-275 (329)
309 PRK13900 type IV secretion sys 95.3 0.024 5.1E-07 54.2 5.0 26 240-265 161-186 (332)
310 cd01878 HflX HflX subfamily. 95.3 0.061 1.3E-06 47.1 7.3 23 240-262 42-64 (204)
311 PF05729 NACHT: NACHT domain 95.3 0.013 2.8E-07 49.1 2.7 23 241-263 2-24 (166)
312 COG4619 ABC-type uncharacteriz 95.3 0.024 5.2E-07 48.5 4.2 25 241-265 31-55 (223)
313 cd02020 CMPK Cytidine monophos 95.3 0.019 4.1E-07 47.3 3.6 30 242-271 2-31 (147)
314 PF13479 AAA_24: AAA domain 95.2 0.014 3E-07 52.1 2.9 29 240-272 4-32 (213)
315 PRK00279 adk adenylate kinase; 95.2 0.02 4.4E-07 51.0 3.9 30 241-270 2-31 (215)
316 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.4E-07 49.9 3.0 24 241-264 3-26 (179)
317 TIGR01618 phage_P_loop phage n 95.2 0.01 2.3E-07 53.1 2.0 22 239-260 12-33 (220)
318 PLN02200 adenylate kinase fami 95.2 0.022 4.8E-07 51.6 4.1 31 240-270 44-74 (234)
319 PHA02530 pseT polynucleotide k 95.2 0.019 4.2E-07 53.7 3.9 30 241-270 4-33 (300)
320 KOG0732|consensus 95.2 0.018 3.9E-07 61.7 4.0 58 205-265 264-325 (1080)
321 PRK03731 aroL shikimate kinase 95.2 0.019 4.2E-07 49.0 3.5 30 241-270 4-33 (171)
322 TIGR01420 pilT_fam pilus retra 95.2 0.062 1.3E-06 51.6 7.3 88 241-331 124-223 (343)
323 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.065 1.4E-06 45.0 6.7 83 240-327 26-125 (157)
324 PRK13946 shikimate kinase; Pro 95.1 0.021 4.6E-07 49.6 3.6 31 240-270 11-41 (184)
325 COG0703 AroK Shikimate kinase 95.1 0.018 3.8E-07 49.5 3.0 30 240-269 3-32 (172)
326 PRK08233 hypothetical protein; 95.1 0.018 3.8E-07 49.5 3.1 26 240-265 4-29 (182)
327 PF13555 AAA_29: P-loop contai 95.1 0.02 4.3E-07 40.6 2.7 23 241-263 25-47 (62)
328 COG5271 MDN1 AAA ATPase contai 95.1 0.056 1.2E-06 60.4 7.1 98 240-337 150-252 (4600)
329 COG2607 Predicted ATPase (AAA+ 95.0 0.033 7.1E-07 50.3 4.5 46 207-263 61-109 (287)
330 COG1116 TauB ABC-type nitrate/ 95.0 0.04 8.7E-07 49.9 5.1 32 241-272 31-65 (248)
331 PRK13948 shikimate kinase; Pro 95.0 0.025 5.4E-07 49.3 3.7 31 240-270 11-41 (182)
332 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.031 6.7E-07 53.3 4.4 41 294-334 226-266 (358)
333 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.069 1.5E-06 47.6 6.4 21 241-261 31-51 (213)
334 PRK08939 primosomal protein Dn 94.9 0.017 3.7E-07 54.5 2.5 25 240-264 157-181 (306)
335 COG1126 GlnQ ABC-type polar am 94.9 0.0063 1.4E-07 53.9 -0.4 31 241-271 30-63 (240)
336 PLN02459 probable adenylate ki 94.8 0.04 8.6E-07 50.7 4.7 32 240-271 30-61 (261)
337 TIGR03263 guanyl_kin guanylate 94.8 0.021 4.5E-07 49.1 2.7 25 241-265 3-27 (180)
338 PRK14529 adenylate kinase; Pro 94.8 0.022 4.8E-07 51.2 2.9 27 241-267 2-28 (223)
339 PRK13826 Dtr system oriT relax 94.8 0.056 1.2E-06 59.0 6.3 84 241-327 399-494 (1102)
340 PF13521 AAA_28: AAA domain; P 94.7 0.024 5.2E-07 48.0 2.8 21 242-262 2-22 (163)
341 cd00071 GMPK Guanosine monopho 94.7 0.036 7.8E-07 45.8 3.8 25 242-266 2-26 (137)
342 COG1474 CDC6 Cdc6-related prot 94.7 0.038 8.3E-07 53.5 4.5 24 241-264 44-67 (366)
343 PLN02674 adenylate kinase 94.7 0.031 6.6E-07 51.0 3.6 28 240-267 32-59 (244)
344 PRK13851 type IV secretion sys 94.7 0.044 9.5E-07 52.6 4.8 26 240-265 163-188 (344)
345 TIGR03015 pepcterm_ATPase puta 94.7 0.025 5.5E-07 51.8 3.1 24 241-264 45-68 (269)
346 PRK14527 adenylate kinase; Pro 94.7 0.024 5.3E-07 49.4 2.8 25 241-265 8-32 (191)
347 PRK00300 gmk guanylate kinase; 94.6 0.028 6E-07 49.4 3.0 24 241-264 7-30 (205)
348 PF01926 MMR_HSR1: 50S ribosom 94.6 0.024 5.2E-07 45.0 2.3 21 241-261 1-21 (116)
349 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.042 9.1E-07 53.1 4.4 26 240-265 63-88 (362)
350 PF01637 Arch_ATPase: Archaeal 94.5 0.039 8.5E-07 48.8 3.9 26 240-265 21-46 (234)
351 cd01895 EngA2 EngA2 subfamily. 94.5 0.21 4.6E-06 41.6 8.2 23 240-262 3-25 (174)
352 PRK04040 adenylate kinase; Pro 94.5 0.04 8.7E-07 48.2 3.7 24 241-264 4-27 (188)
353 cd04177 RSR1 RSR1 subgroup. R 94.5 0.029 6.4E-07 47.4 2.8 23 240-262 2-24 (168)
354 PRK03846 adenylylsulfate kinas 94.4 0.022 4.7E-07 50.1 2.0 86 240-328 25-121 (198)
355 COG1936 Predicted nucleotide k 94.4 0.031 6.7E-07 47.9 2.7 22 241-262 2-23 (180)
356 TIGR00362 DnaA chromosomal rep 94.4 0.025 5.5E-07 55.5 2.5 23 241-263 138-160 (405)
357 COG1120 FepC ABC-type cobalami 94.4 0.044 9.5E-07 50.2 3.9 32 240-271 29-63 (258)
358 cd04137 RheB Rheb (Ras Homolog 94.3 0.033 7.2E-07 47.6 2.8 23 240-262 2-24 (180)
359 TIGR02788 VirB11 P-type DNA tr 94.3 0.06 1.3E-06 50.8 4.7 26 240-265 145-170 (308)
360 PRK00149 dnaA chromosomal repl 94.3 0.028 6E-07 56.0 2.5 23 241-263 150-172 (450)
361 PRK12339 2-phosphoglycerate ki 94.3 0.049 1.1E-06 48.0 3.8 31 240-270 4-34 (197)
362 PRK04182 cytidylate kinase; Pr 94.3 0.047 1E-06 46.6 3.6 29 241-269 2-30 (180)
363 cd02027 APSK Adenosine 5'-phos 94.2 0.033 7.2E-07 46.7 2.5 22 242-263 2-23 (149)
364 PRK13889 conjugal transfer rel 94.2 0.055 1.2E-06 58.6 4.7 84 241-327 364-459 (988)
365 PRK01184 hypothetical protein; 94.2 0.05 1.1E-06 47.0 3.7 29 241-270 3-31 (184)
366 COG1102 Cmk Cytidylate kinase 94.2 0.048 1E-06 46.2 3.3 30 242-271 3-32 (179)
367 PRK14088 dnaA chromosomal repl 94.2 0.033 7.2E-07 55.3 2.8 23 241-263 132-154 (440)
368 cd04124 RabL2 RabL2 subfamily. 94.1 0.037 8.1E-07 46.5 2.7 22 240-261 1-22 (161)
369 cd02023 UMPK Uridine monophosp 94.1 0.039 8.4E-07 48.3 2.9 22 242-263 2-23 (198)
370 TIGR00231 small_GTP small GTP- 94.1 0.039 8.5E-07 44.9 2.7 23 240-262 2-24 (161)
371 TIGR02237 recomb_radB DNA repa 94.1 0.049 1.1E-06 48.1 3.5 33 240-272 13-49 (209)
372 PF03193 DUF258: Protein of un 94.1 0.063 1.4E-06 45.7 4.0 22 241-262 37-58 (161)
373 cd01124 KaiC KaiC is a circadi 94.1 0.039 8.4E-07 47.5 2.7 30 242-271 2-35 (187)
374 TIGR00235 udk uridine kinase. 94.1 0.04 8.7E-07 48.7 2.8 25 240-264 7-31 (207)
375 cd03112 CobW_like The function 94.1 0.17 3.7E-06 42.8 6.6 22 242-263 3-24 (158)
376 cd04119 RJL RJL (RabJ-Like) su 94.1 0.04 8.7E-07 46.0 2.7 23 240-262 1-23 (168)
377 TIGR02173 cyt_kin_arch cytidyl 94.0 0.056 1.2E-06 45.8 3.6 30 241-270 2-31 (171)
378 KOG0060|consensus 94.0 0.035 7.7E-07 55.7 2.6 28 237-264 459-486 (659)
379 PLN02165 adenylate isopentenyl 93.9 0.071 1.5E-06 50.7 4.4 28 241-268 45-72 (334)
380 PF00005 ABC_tran: ABC transpo 93.9 0.025 5.3E-07 46.2 1.1 26 240-265 12-37 (137)
381 KOG1942|consensus 93.9 0.056 1.2E-06 50.1 3.5 54 203-265 35-90 (456)
382 cd04138 H_N_K_Ras_like H-Ras/N 93.9 0.047 1E-06 45.3 2.8 22 240-261 2-23 (162)
383 PF13654 AAA_32: AAA domain; P 93.9 0.017 3.6E-07 58.3 0.0 45 206-261 8-52 (509)
384 COG4525 TauB ABC-type taurine 93.9 0.095 2.1E-06 46.0 4.6 25 241-265 33-57 (259)
385 PRK06547 hypothetical protein; 93.9 0.058 1.3E-06 46.5 3.4 28 240-267 16-43 (172)
386 COG3839 MalK ABC-type sugar tr 93.9 0.042 9.1E-07 52.3 2.7 31 241-271 31-64 (338)
387 cd04136 Rap_like Rap-like subf 93.9 0.048 1E-06 45.5 2.8 22 240-261 2-23 (163)
388 smart00175 RAB Rab subfamily o 93.8 0.045 9.8E-07 45.6 2.6 22 241-262 2-23 (164)
389 cd04160 Arfrp1 Arfrp1 subfamil 93.8 0.047 1E-06 45.8 2.8 23 241-263 1-23 (167)
390 cd00157 Rho Rho (Ras homology) 93.8 0.047 1E-06 45.9 2.7 23 240-262 1-23 (171)
391 PRK05480 uridine/cytidine kina 93.8 0.051 1.1E-06 48.1 3.0 25 240-264 7-31 (209)
392 cd04156 ARLTS1 ARLTS1 subfamil 93.8 0.044 9.6E-07 45.6 2.5 22 241-262 1-22 (160)
393 cd04155 Arl3 Arl3 subfamily. 93.8 0.043 9.4E-07 46.4 2.5 24 239-262 14-37 (173)
394 TIGR03574 selen_PSTK L-seryl-t 93.8 0.041 8.9E-07 50.2 2.5 23 242-264 2-24 (249)
395 COG4088 Predicted nucleotide k 93.8 0.038 8.3E-07 48.7 2.1 25 241-265 3-27 (261)
396 PRK05541 adenylylsulfate kinas 93.8 0.044 9.6E-07 47.0 2.5 25 240-264 8-32 (176)
397 cd01862 Rab7 Rab7 subfamily. 93.8 0.046 1E-06 46.0 2.6 22 241-262 2-23 (172)
398 cd04113 Rab4 Rab4 subfamily. 93.7 0.049 1.1E-06 45.5 2.7 22 241-262 2-23 (161)
399 TIGR02782 TrbB_P P-type conjug 93.7 0.095 2.1E-06 49.3 4.9 24 241-264 134-157 (299)
400 PRK07132 DNA polymerase III su 93.7 0.33 7.2E-06 45.6 8.5 85 240-327 19-116 (299)
401 cd01867 Rab8_Rab10_Rab13_like 93.7 0.053 1.1E-06 45.8 2.8 23 240-262 4-26 (167)
402 TIGR02525 plasmid_TraJ plasmid 93.7 0.11 2.4E-06 50.4 5.3 89 241-331 151-253 (372)
403 PF09723 Zn-ribbon_8: Zinc rib 93.7 0.19 4.1E-06 32.6 4.8 32 42-80 5-36 (42)
404 PRK13808 adenylate kinase; Pro 93.7 0.065 1.4E-06 51.0 3.6 29 241-269 2-30 (333)
405 PRK09825 idnK D-gluconate kina 93.7 0.058 1.3E-06 46.6 3.0 25 241-265 5-29 (176)
406 PRK08154 anaerobic benzoate ca 93.6 0.13 2.9E-06 48.5 5.7 30 240-269 134-163 (309)
407 PF00406 ADK: Adenylate kinase 93.6 0.043 9.3E-07 45.9 2.2 22 244-265 1-22 (151)
408 cd04101 RabL4 RabL4 (Rab-like4 93.6 0.052 1.1E-06 45.4 2.6 22 240-261 1-22 (164)
409 cd00154 Rab Rab family. Rab G 93.6 0.055 1.2E-06 44.3 2.7 23 241-263 2-24 (159)
410 cd03239 ABC_SMC_head The struc 93.6 0.43 9.3E-06 41.3 8.4 23 242-264 25-47 (178)
411 cd04157 Arl6 Arl6 subfamily. 93.6 0.048 1E-06 45.4 2.3 22 241-262 1-22 (162)
412 COG1136 SalX ABC-type antimicr 93.6 0.14 3E-06 46.1 5.3 24 241-264 33-56 (226)
413 KOG0736|consensus 93.6 0.22 4.7E-06 51.9 7.3 107 218-326 412-523 (953)
414 PF00519 PPV_E1_C: Papillomavi 93.6 0.13 2.9E-06 49.5 5.5 77 241-334 264-341 (432)
415 cd01892 Miro2 Miro2 subfamily. 93.5 0.058 1.3E-06 45.9 2.8 25 237-261 2-26 (169)
416 PRK05800 cobU adenosylcobinami 93.5 0.086 1.9E-06 45.3 3.8 26 241-266 3-28 (170)
417 PRK10536 hypothetical protein; 93.5 0.11 2.4E-06 47.6 4.7 31 301-331 176-206 (262)
418 smart00173 RAS Ras subfamily o 93.5 0.059 1.3E-06 45.1 2.7 21 241-261 2-22 (164)
419 PRK00889 adenylylsulfate kinas 93.5 0.053 1.2E-06 46.5 2.5 24 241-264 6-29 (175)
420 cd04117 Rab15 Rab15 subfamily. 93.5 0.056 1.2E-06 45.5 2.6 20 241-260 2-21 (161)
421 PRK14737 gmk guanylate kinase; 93.4 0.074 1.6E-06 46.4 3.3 26 240-265 5-30 (186)
422 cd02024 NRK1 Nicotinamide ribo 93.4 0.09 2E-06 46.0 3.8 24 242-265 2-25 (187)
423 PRK00093 GTP-binding protein D 93.4 0.27 5.9E-06 48.6 7.7 24 238-261 172-195 (435)
424 TIGR00017 cmk cytidylate kinas 93.4 0.088 1.9E-06 47.2 3.8 32 240-271 3-34 (217)
425 PF00735 Septin: Septin; Inte 93.4 0.055 1.2E-06 50.4 2.6 24 239-262 4-27 (281)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.058 1.3E-06 47.9 2.7 26 240-265 31-56 (218)
427 cd04159 Arl10_like Arl10-like 93.4 0.053 1.1E-06 44.5 2.2 21 242-262 2-22 (159)
428 cd03264 ABC_drug_resistance_li 93.4 0.065 1.4E-06 47.4 2.9 24 241-264 27-50 (211)
429 cd00820 PEPCK_HprK Phosphoenol 93.3 0.061 1.3E-06 42.6 2.4 21 240-260 16-36 (107)
430 PRK13695 putative NTPase; Prov 93.3 0.065 1.4E-06 45.9 2.8 23 241-263 2-24 (174)
431 PRK10416 signal recognition pa 93.3 0.25 5.5E-06 46.9 7.0 24 240-263 115-138 (318)
432 cd03287 ABC_MSH3_euk MutS3 hom 93.3 0.33 7.1E-06 43.6 7.4 21 241-261 33-53 (222)
433 PF03205 MobB: Molybdopterin g 93.3 0.11 2.3E-06 43.3 3.9 24 241-264 2-25 (140)
434 cd01852 AIG1 AIG1 (avrRpt2-ind 93.3 0.44 9.5E-06 41.6 8.1 21 241-261 2-22 (196)
435 cd00876 Ras Ras family. The R 93.3 0.065 1.4E-06 44.3 2.7 22 241-262 1-22 (160)
436 PRK00091 miaA tRNA delta(2)-is 93.3 0.14 3.1E-06 48.3 5.3 27 241-267 6-32 (307)
437 PRK13833 conjugal transfer pro 93.3 0.12 2.6E-06 49.1 4.8 24 240-263 145-168 (323)
438 smart00534 MUTSac ATPase domai 93.3 0.19 4.1E-06 43.6 5.7 20 242-261 2-21 (185)
439 cd03301 ABC_MalK_N The N-termi 93.3 0.064 1.4E-06 47.5 2.7 25 240-264 27-51 (213)
440 cd03269 ABC_putative_ATPase Th 93.2 0.065 1.4E-06 47.3 2.7 24 241-264 28-51 (210)
441 cd01394 radB RadB. The archaea 93.2 0.11 2.3E-06 46.2 4.2 31 241-271 21-55 (218)
442 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.093 2E-06 47.1 3.8 22 241-262 21-42 (235)
443 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.1 2.2E-06 47.2 4.1 32 240-271 22-57 (237)
444 cd01868 Rab11_like Rab11-like. 93.2 0.067 1.4E-06 44.8 2.7 22 240-261 4-25 (165)
445 TIGR03594 GTPase_EngA ribosome 93.2 0.33 7.2E-06 47.8 8.0 88 238-327 171-282 (429)
446 PRK14738 gmk guanylate kinase; 93.2 0.08 1.7E-06 46.9 3.2 24 241-264 15-38 (206)
447 cd01860 Rab5_related Rab5-rela 93.2 0.07 1.5E-06 44.5 2.7 23 240-262 2-24 (163)
448 cd03258 ABC_MetN_methionine_tr 93.2 0.07 1.5E-06 47.9 2.9 26 240-265 32-57 (233)
449 cd04145 M_R_Ras_like M-Ras/R-R 93.1 0.075 1.6E-06 44.3 2.9 23 240-262 3-25 (164)
450 PF06745 KaiC: KaiC; InterPro 93.1 0.063 1.4E-06 48.0 2.5 32 240-271 20-56 (226)
451 PRK09361 radB DNA repair and r 93.1 0.12 2.5E-06 46.3 4.2 33 240-272 24-60 (225)
452 PF10662 PduV-EutP: Ethanolami 93.1 0.068 1.5E-06 44.5 2.4 23 241-263 3-25 (143)
453 TIGR03499 FlhF flagellar biosy 93.1 0.35 7.7E-06 45.0 7.5 24 240-263 195-218 (282)
454 cd01896 DRG The developmentall 93.1 0.65 1.4E-05 41.9 9.1 23 241-263 2-24 (233)
455 TIGR02236 recomb_radA DNA repa 93.1 0.18 3.9E-06 47.5 5.6 23 240-262 96-118 (310)
456 cd04106 Rab23_lke Rab23-like s 93.1 0.07 1.5E-06 44.5 2.6 21 241-261 2-22 (162)
457 COG3842 PotA ABC-type spermidi 93.1 0.066 1.4E-06 51.3 2.6 24 241-264 33-56 (352)
458 TIGR03608 L_ocin_972_ABC putat 93.1 0.073 1.6E-06 46.8 2.8 26 240-265 25-50 (206)
459 cd03266 ABC_NatA_sodium_export 93.0 0.071 1.5E-06 47.3 2.7 25 241-265 33-57 (218)
460 PRK08356 hypothetical protein; 93.0 0.12 2.5E-06 45.4 3.9 22 240-261 6-27 (195)
461 cd04139 RalA_RalB RalA/RalB su 93.0 0.075 1.6E-06 44.2 2.6 22 241-262 2-23 (164)
462 PRK13894 conjugal transfer ATP 93.0 0.15 3.2E-06 48.5 4.8 23 240-262 149-171 (319)
463 KOG0741|consensus 93.0 0.042 9.1E-07 54.7 1.2 69 240-312 539-609 (744)
464 cd01898 Obg Obg subfamily. Th 93.0 0.074 1.6E-06 44.7 2.6 22 241-262 2-23 (170)
465 cd01866 Rab2 Rab2 subfamily. 93.0 0.078 1.7E-06 44.9 2.7 23 240-262 5-27 (168)
466 cd03262 ABC_HisP_GlnQ_permease 92.9 0.076 1.6E-06 46.9 2.7 26 240-265 27-52 (213)
467 cd03247 ABCC_cytochrome_bd The 92.9 0.084 1.8E-06 45.4 2.9 88 240-327 29-143 (178)
468 PLN02199 shikimate kinase 92.9 0.17 3.7E-06 47.3 5.1 29 240-268 103-131 (303)
469 cd03292 ABC_FtsE_transporter F 92.9 0.081 1.8E-06 46.8 2.9 25 240-264 28-52 (214)
470 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 92.9 0.08 1.7E-06 44.5 2.7 22 240-261 3-24 (166)
471 TIGR02528 EutP ethanolamine ut 92.9 0.073 1.6E-06 43.5 2.4 22 241-262 2-23 (142)
472 cd03216 ABC_Carb_Monos_I This 92.9 0.087 1.9E-06 44.8 2.9 85 240-326 27-126 (163)
473 TIGR02605 CxxC_CxxC_SSSS putat 92.9 0.25 5.5E-06 33.4 4.7 34 41-81 4-37 (52)
474 cd03227 ABC_Class2 ABC-type Cl 92.9 0.06 1.3E-06 45.7 1.9 22 241-262 23-44 (162)
475 PRK13975 thymidylate kinase; P 92.9 0.085 1.8E-06 45.9 2.9 25 241-265 4-28 (196)
476 COG1117 PstB ABC-type phosphat 92.9 0.072 1.6E-06 47.3 2.4 24 240-263 34-57 (253)
477 cd01861 Rab6 Rab6 subfamily. 92.9 0.077 1.7E-06 44.2 2.5 21 241-261 2-22 (161)
478 cd04140 ARHI_like ARHI subfami 92.9 0.084 1.8E-06 44.4 2.8 22 240-261 2-23 (165)
479 PF07931 CPT: Chloramphenicol 92.9 0.099 2.2E-06 45.1 3.2 31 241-271 3-33 (174)
480 TIGR00376 DNA helicase, putati 92.9 0.099 2.2E-06 54.4 3.8 36 212-261 160-195 (637)
481 cd03228 ABCC_MRP_Like The MRP 92.9 0.09 2E-06 45.0 3.0 88 240-327 29-141 (171)
482 cd02022 DPCK Dephospho-coenzym 92.9 0.13 2.8E-06 44.5 3.9 26 242-268 2-27 (179)
483 cd03246 ABCC_Protease_Secretio 92.8 0.09 1.9E-06 45.1 3.0 87 241-327 30-141 (173)
484 smart00072 GuKc Guanylate kina 92.8 0.12 2.6E-06 44.9 3.7 25 241-265 4-28 (184)
485 cd04127 Rab27A Rab27a subfamil 92.8 0.081 1.8E-06 45.1 2.7 22 240-261 5-26 (180)
486 cd04176 Rap2 Rap2 subgroup. T 92.8 0.084 1.8E-06 44.1 2.7 22 240-261 2-23 (163)
487 PF00485 PRK: Phosphoribulokin 92.8 0.067 1.4E-06 46.8 2.1 23 242-264 2-24 (194)
488 TIGR02315 ABC_phnC phosphonate 92.8 0.084 1.8E-06 47.7 2.8 25 240-264 29-53 (243)
489 TIGR02673 FtsE cell division A 92.8 0.082 1.8E-06 46.8 2.7 24 241-264 30-53 (214)
490 TIGR00960 3a0501s02 Type II (G 92.8 0.081 1.8E-06 46.9 2.7 24 241-264 31-54 (216)
491 TIGR03881 KaiC_arch_4 KaiC dom 92.8 0.13 2.8E-06 46.1 4.0 21 240-260 21-41 (229)
492 cd00877 Ran Ran (Ras-related n 92.7 0.087 1.9E-06 44.6 2.7 21 241-261 2-22 (166)
493 cd04115 Rab33B_Rab33A Rab33B/R 92.7 0.089 1.9E-06 44.6 2.8 22 240-261 3-24 (170)
494 PRK13541 cytochrome c biogenes 92.7 0.093 2E-06 45.9 2.9 25 240-264 27-51 (195)
495 TIGR02858 spore_III_AA stage I 92.7 0.085 1.8E-06 48.9 2.7 25 241-265 113-137 (270)
496 cd01864 Rab19 Rab19 subfamily. 92.7 0.09 2E-06 44.2 2.7 22 240-261 4-25 (165)
497 TIGR02211 LolD_lipo_ex lipopro 92.7 0.087 1.9E-06 46.9 2.7 24 241-264 33-56 (221)
498 cd03254 ABCC_Glucan_exporter_l 92.7 0.087 1.9E-06 47.2 2.7 24 241-264 31-54 (229)
499 cd03261 ABC_Org_Solvent_Resist 92.6 0.087 1.9E-06 47.4 2.7 25 241-265 28-52 (235)
500 PRK10646 ADP-binding protein; 92.6 0.2 4.3E-06 42.3 4.6 25 241-265 30-54 (153)
No 1
>KOG0480|consensus
Probab=100.00 E-value=1.9e-82 Score=613.76 Aligned_cols=332 Identities=35% Similarity=0.566 Sum_probs=283.7
Q ss_pred CCcccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC-e
Q psy1366 3 ICPQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN-F 81 (345)
Q Consensus 3 ~~~~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~-f 81 (345)
+-|..++.+.+++..+|+||+|.|+|+|+|+|+|.+++++|.|..||..+.. .++.++|++|..||| ..|.++. |
T Consensus 118 nlp~~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~---v~q~fkYt~Pt~C~n-p~C~nrr~f 193 (764)
T KOG0480|consen 118 NLPTRHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRN---VEQQFKYTEPTKCPN-PVCSNRRSF 193 (764)
T ss_pred ccccccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeecc---chhcCccCCCccCCC-ccccCCcee
Confidence 3477799999999999999999999999999999999999999999998764 345679999999999 4898854 6
Q ss_pred eeeecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeee--ec-ccCc-------
Q psy1366 82 SPVTSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWR--PV-VKGV------- 149 (345)
Q Consensus 82 ~~l~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~--~~-~~~~------- 149 (345)
.+. ..++.|.|||+|||||.. .|.|.+||+++|+|++|+|++|+|||+|.+||++..... .+ ..+.
T Consensus 194 ~l~--~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~ 271 (764)
T KOG0480|consen 194 TLD--RSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRG 271 (764)
T ss_pred eee--cccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccC
Confidence 665 677899999999999998 899999999999999999999999999999999976421 00 0111
Q ss_pred -c-ceeEEEeeeceeeeeccCC--------CC------------cccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcc
Q psy1366 150 -R-SDIELCLSANYLTVCNDQS--------SS------------LVITPELRAEVTQFWEDHKYDGLAARNHILASICPA 207 (345)
Q Consensus 150 -~-~~~~~~i~a~~i~~~~~~~--------~~------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~ 207 (345)
. ...-+.++|++|...+.+. .. ..++.+ +|.++.+...... .|.+|+.|++|.
T Consensus 272 ~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~---e~~~~~em~~~~n--ly~~lv~Sl~Ps 346 (764)
T KOG0480|consen 272 GETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSE---EFAEIREMSKDEN--LYKNLVNSLFPS 346 (764)
T ss_pred CCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHH---HHHHHHHHhcCch--HHHHHHHhhCcc
Confidence 1 1344677888776544330 00 012222 3333333322222 258899999999
Q ss_pred cccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec
Q psy1366 208 IYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN 287 (345)
Q Consensus 208 i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~ 287 (345)
||||+.||++|+|+|+||+.|...+|+.+||++||+++|||||||||+|++++..+||++|++|+.++++|||++++||.
T Consensus 347 IyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~ 426 (764)
T KOG0480|consen 347 IYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDE 426 (764)
T ss_pred ccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 288 --GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 288 --~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
|+|.++||||++||+|||||||||||+..+|.+||||||||+|||+|||+.+|||||+
T Consensus 427 esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARt 486 (764)
T KOG0480|consen 427 ESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNART 486 (764)
T ss_pred CCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchh
Confidence 9999999999999999999999999999999999999999999999999999999996
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-79 Score=615.67 Aligned_cols=329 Identities=38% Similarity=0.627 Sum_probs=294.5
Q ss_pred CCcccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCC---CCC
Q psy1366 3 ICPQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSC---DGT 79 (345)
Q Consensus 3 ~~~~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C---~~~ 79 (345)
..|.-...|.+++.|+||||+++|+|+|+|.++|++++++|.|.+||+.+.+.+. .+.+.+|..|+ +| ...
T Consensus 90 ~~~~~~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~---~~~~~~~~~C~---~~~~~~~~ 163 (682)
T COG1241 90 NLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQS---EFRVEPPRECE---NCGKFGKG 163 (682)
T ss_pred CCcCCcChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEec---cccccCCccCC---CccccCCC
Confidence 3455557888999999999999999999999999999999999999999988764 23478899997 46 222
Q ss_pred CeeeeecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeee-ec-ccCccceeEE
Q psy1366 80 NFSPVTSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWR-PV-VKGVRSDIEL 155 (345)
Q Consensus 80 ~f~~l~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~-~~-~~~~~~~~~~ 155 (345)
.|... .+.+.|+|||+|+|||+| .|.|++||+++|+|++||+++++|||+|.||||++.++. .. .......+++
T Consensus 164 ~~~~~--~~~s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~ 241 (682)
T COG1241 164 PLKLV--PRKSEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRKGPVFEI 241 (682)
T ss_pred ceEEe--cCcceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccccCCceEEE
Confidence 45555 567889999999999999 889999999999999999999999999999999987752 22 1234578999
Q ss_pred EeeeceeeeeccCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCc
Q psy1366 156 CLSANYLTVCNDQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSK 235 (345)
Q Consensus 156 ~i~a~~i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~ 235 (345)
+++|++++..+.. ....+++++.++|.++.+. .+ .++.+++|++|+|||+++||+|++|+||||+.+..++|++
T Consensus 242 ~~~a~~v~~~~~~-~~~~~t~ed~e~i~elak~--~~---i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~ 315 (682)
T COG1241 242 YLEANSVEKLDKR-EEVEITEEDEEEIKELAKR--PD---IYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTR 315 (682)
T ss_pred EEEEEEEEeccch-hhccCCHHHHHHHHHHhcC--Cc---HHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcc
Confidence 9999999988765 4567888999988887642 22 3589999999999999999999999999999999999999
Q ss_pred eeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec--CeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 236 VRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN--GEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 236 ~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~--~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
+||++||||+||||||||||++++++++||++|++|.+++++||||++.||. |+|++++|||++||+|||||||||||
T Consensus 316 iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 316 IRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred cccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 9999999999999999999999999999999999999999999999999984 69999999999999999999999999
Q ss_pred CHHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 314 KEHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 314 ~~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
+..++++||||||||+|||+||||+++||||+
T Consensus 396 ~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 396 NEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 99999999999999999999999999999995
No 3
>KOG0482|consensus
Probab=100.00 E-value=1.5e-81 Score=593.45 Aligned_cols=323 Identities=35% Similarity=0.569 Sum_probs=284.2
Q ss_pred cCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC---eeeeecC
Q psy1366 11 QFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN---FSPVTSV 87 (345)
Q Consensus 11 ~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~---f~~l~~~ 87 (345)
|-+++.|+|+||+++|+|+|+|+|||.+..++|.|..||.+++++++ +..|.++..||| +.|..++ --.+. .
T Consensus 150 R~vka~~iG~LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~yQeV~---s~~F~pl~~CpS-~eC~~n~~~G~L~lq-t 224 (721)
T KOG0482|consen 150 REVKADHIGSLVTVRGIVTRVSDVKPSMVVATYTCDQCGAETYQEVN---SRTFTPLSECPS-EECRTNKAGGRLYLQ-T 224 (721)
T ss_pred hhhhhhhccceEEEEEEEEeccccccceEEEEEecccccHhhhcccc---CccccchhhCCh-HHhhhcccCCeEEEE-e
Confidence 45789999999999999999999999999999999999999998875 457899999999 6898653 12232 3
Q ss_pred CCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeee----ecccCccceeEEEeeece
Q psy1366 88 DQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWR----PVVKGVRSDIELCLSANY 161 (345)
Q Consensus 88 ~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~----~~~~~~~~~~~~~i~a~~ 161 (345)
.-|+|+.||++++||.. +|.|++|||++|+++++++.+|+|||.|.|+||+.+... ++..| -..++|++|+.
T Consensus 225 RgSKFikfQe~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aG--LladtYLeAh~ 302 (721)
T KOG0482|consen 225 RGSKFIKFQEVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAG--LLADTYLEAHR 302 (721)
T ss_pred cccccchhhhhhHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhh--hHHHHHHHHhh
Confidence 34679999999999998 999999999999999999999999999999999987532 22222 23578999999
Q ss_pred eeeeccCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeec
Q psy1366 162 LTVCNDQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH 241 (345)
Q Consensus 162 i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~ 241 (345)
|...++.+...+.+.+...+..++.. ..+ .|+.+++||||+||||++||+|++|.|+||+.+...+|+++||+||
T Consensus 303 v~~~nk~~~~~~~~~~~~~~~~~~~~---~~d--~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdIN 377 (721)
T KOG0482|consen 303 VVQINKKYDNIEKTGELEPEELELIA---EGD--FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDIN 377 (721)
T ss_pred hhhhccccccccccccccHHHHHHhh---ccc--HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeeccee
Confidence 98877766655554444344333322 223 3689999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec--CeeEeeeceeeecCCcEEEEcCCCCCCHHhHH
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN--GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRT 319 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~--~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~ 319 (345)
|+|+||||++||||++++.+++||++|++|.+|+++||||++.||. |+++++.|||||||+|||||||||||.+.++.
T Consensus 378 icLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 378 ICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred EEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999994 99999999999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 320 SIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 320 ~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
++||+||||+|||+||||.+|||||.
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~ 483 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNART 483 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhH
Confidence 99999999999999999999999994
No 4
>KOG0478|consensus
Probab=100.00 E-value=6.4e-76 Score=572.30 Aligned_cols=326 Identities=34% Similarity=0.504 Sum_probs=285.5
Q ss_pred cccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC-eeeee
Q psy1366 7 LHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN-FSPVT 85 (345)
Q Consensus 7 ~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~-f~~l~ 85 (345)
...++.+++++|.|||+|+|+|+|+|++-|.+.+++|+|..|++...+.++ .+.+..|..|+ .|+.++ |.+++
T Consensus 229 ~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~d---rg~i~eP~~C~---~C~~~~~~~Lih 302 (804)
T KOG0478|consen 229 TFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESD---RGRIKEPMLCK---ECGTTNSFQLLH 302 (804)
T ss_pred ccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEee---cCccCCCcccc---cccCcccceeeh
Confidence 445677999999999999999999999999999999999999999888765 35789999995 698765 77774
Q ss_pred cCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeeccc---CccceeEEEeeec
Q psy1366 86 SVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPVVK---GVRSDIELCLSAN 160 (345)
Q Consensus 86 ~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~~~---~~~~~~~~~i~a~ 160 (345)
+.+.|.|.|.||+||.| .|.|++|.++.|++++||||+++|||+|.|||||+..|-+... ..++.|.+|+.+.
T Consensus 303 --nrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvv 380 (804)
T KOG0478|consen 303 --NRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVV 380 (804)
T ss_pred --hhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhh
Confidence 47789999999999999 8999999999999999999999999999999999987644332 2346788999999
Q ss_pred eeeeeccCCC--------CcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCC
Q psy1366 161 YLTVCNDQSS--------SLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGED 232 (345)
Q Consensus 161 ~i~~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~ 232 (345)
|+...+.... +..+..++.+.+.++. ..|. .|+.|++||||+|||+|++|+|++|+||||+.+....
T Consensus 381 h~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~els----krpd-iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~ 455 (804)
T KOG0478|consen 381 HIRKASMKRLEGSDERDVDEVRRIEDLEKIQELS----KRPD-IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEK 455 (804)
T ss_pred hhhhhhhhhccccccccccccccHHHHHHHHHHh----cCcc-HHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccc
Confidence 9876544211 1122233344444432 2333 4689999999999999999999999999999999888
Q ss_pred CCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCC
Q psy1366 233 GSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEF 310 (345)
Q Consensus 233 ~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEi 310 (345)
+.+.|++|||||+|||||||||||+++++++||++|++|++++++|||+.+.|| +++|.++.|||+++|+|+||||||
T Consensus 456 ~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 456 SGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEF 535 (804)
T ss_pred cccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhh
Confidence 889999999999999999999999999999999999999999999999999996 589999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 311 SSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 311 dk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
|||+...|+.|||+||||+++|+||||.++||||+
T Consensus 536 DKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~ 570 (804)
T KOG0478|consen 536 DKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARC 570 (804)
T ss_pred hhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccc
Confidence 99999999999999999999999999999999995
No 5
>KOG0477|consensus
Probab=100.00 E-value=5.1e-76 Score=566.68 Aligned_cols=323 Identities=37% Similarity=0.549 Sum_probs=284.1
Q ss_pred cCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCCeeeeecCCCC
Q psy1366 11 QFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTNFSPVTSVDQD 90 (345)
Q Consensus 11 ~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~f~~l~~~~~~ 90 (345)
+.+|..|+|+||.+.|+|++.|-|.|-+....|.|.+||..+...+. ....-..|..|| .|.+++.+.+ +.+.+
T Consensus 261 r~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~q--s~n~evkp~~C~---~cqSkGpf~v-n~e~T 334 (854)
T KOG0477|consen 261 RSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQ--SSNSEVKPGSCP---ECQSKGPFEV-NVEET 334 (854)
T ss_pred HHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceee--ccCceeCCCCCc---cccCCCCCcc-chhhh
Confidence 34678899999999999999999999999999999999986543221 122346789997 5888764434 25678
Q ss_pred ceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeec--ccCccceeEEEeeeceeeeec
Q psy1366 91 NYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPV--VKGVRSDIELCLSANYLTVCN 166 (345)
Q Consensus 91 ~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~--~~~~~~~~~~~i~a~~i~~~~ 166 (345)
.|.+||+|+|||.| ++.|.+||+.+|+|..||||.|+|||.|.|||||...|.-. .+++.+.|.++++||+|...+
T Consensus 335 vyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~sLN~kngFpvfatvi~ANhV~~k~ 414 (854)
T KOG0477|consen 335 VYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGSLNTKNGFPVFATVIEANHVVKKD 414 (854)
T ss_pred hhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeecccccccccccCCccccceeheehhhhhhc
Confidence 89999999999999 99999999999999999999999999999999999877532 245678899999999998776
Q ss_pred cCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeC
Q psy1366 167 DQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVG 246 (345)
Q Consensus 167 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G 246 (345)
.......+++| .++.||+..+..++. .++++||||+||||+++|+|++|+|+||++++...++++||++|+||+|
T Consensus 415 ~~~~~~~ltde---d~k~i~~lskd~~i~--~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~G 489 (854)
T KOG0477|consen 415 GKFDVDELTDE---DFKEIWELSKDPPIK--ERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLG 489 (854)
T ss_pred cccchhHHhHH---HHHHHHHHhcCccHH--HHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEec
Confidence 64433344444 455556555566664 6799999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHH
Q psy1366 247 DPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEA 324 (345)
Q Consensus 247 ~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~ea 324 (345)
||||||||+|||+++.++|+++++|.+++++|||+++.|+ +++|++++|||||||+|||||||||||++.++..+|||
T Consensus 490 DPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEA 569 (854)
T KOG0477|consen 490 DPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEA 569 (854)
T ss_pred CCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHH
Confidence 9999999999999999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HhCCEEEEeeCCeEEEeccC
Q psy1366 325 MEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 325 me~~~i~i~k~gi~~~l~ar 344 (345)
||||.|||+||||+++|+||
T Consensus 570 MEQQSISISKAGIVtsLqAr 589 (854)
T KOG0477|consen 570 MEQQSISISKAGIVTSLQAR 589 (854)
T ss_pred HHhcchhhhhhhHHHHHHhh
Confidence 99999999999999999998
No 6
>KOG0481|consensus
Probab=100.00 E-value=5.3e-73 Score=536.01 Aligned_cols=329 Identities=31% Similarity=0.484 Sum_probs=287.4
Q ss_pred ccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCC----CCCCCCCeeeee
Q psy1366 10 TQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSP----SSCDGTNFSPVT 85 (345)
Q Consensus 10 ~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~----~~C~~~~f~~l~ 85 (345)
+|.++++++.|||.|.|+|+.+|.++.+.+.....|.+|.+....-........+..|..|.++ ..|.-.+|.++
T Consensus 129 iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp~DPyii~- 207 (729)
T KOG0481|consen 129 IRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCPLDPYIIM- 207 (729)
T ss_pred HhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCCCCCEEEc-
Confidence 4568999999999999999999999999999999999999865322111123357889999632 58999999988
Q ss_pred cCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeecccC----ccceeEEEeee
Q psy1366 86 SVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPVVKG----VRSDIELCLSA 159 (345)
Q Consensus 86 ~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~~~~----~~~~~~~~i~a 159 (345)
.++++|+|+|.+|+||.| +|.|++||++..+++..|++++.||.+|+|+|||..+......+ ....-..|+.+
T Consensus 208 -pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirV 286 (729)
T KOG0481|consen 208 -PDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRV 286 (729)
T ss_pred -ccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEE
Confidence 568899999999999999 99999999999999999999999999999999998653211111 11334567888
Q ss_pred ceeeeeccCCC---CcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCce
Q psy1366 160 NYLTVCNDQSS---SLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKV 236 (345)
Q Consensus 160 ~~i~~~~~~~~---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~ 236 (345)
..|+...+... ...+|+|++++|.+++.. +. .|+.|..||+|+|||++++|+|+++.||||..|..+||...
T Consensus 287 vGi~~ds~~ss~~~~~~ft~eEEEeFk~la~~----~d-~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~l 361 (729)
T KOG0481|consen 287 VGIQDDSEGSSRSSATMFTPEEEEEFKKLAAS----PD-VYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTL 361 (729)
T ss_pred EEEEeccCCccccCcccCChhHHHHHHHHhcC----cc-HHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCccee
Confidence 88876655432 236889999999988642 32 36899999999999999999999999999999999999999
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec--CeeEeeeceeeecCCcEEEEcCCCCCC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN--GEWHLEAGALVLSDGGVCCIDEFSSIK 314 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~--~~~~~~~G~l~la~~gi~~IDEidk~~ 314 (345)
||+|||||.|||||+|||||+++.+.+|.++|++|++|+++||||++.||. .+|.++.||+|||||||+||||||||.
T Consensus 362 RGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 362 RGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred ccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 999999999999999999999999999999999999999999999999995 589999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 315 EHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 315 ~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
++++.++|||||||+|||+||||.++||+|+
T Consensus 442 e~DRVAIHEAMEQQTISIAKAGITT~LNSRt 472 (729)
T KOG0481|consen 442 EDDRVAIHEAMEQQTISIAKAGITTTLNSRT 472 (729)
T ss_pred chhhhHHHHHHHhhhHHHhhhcceeeecchh
Confidence 9999999999999999999999999999985
No 7
>KOG0479|consensus
Probab=100.00 E-value=3.9e-72 Score=536.53 Aligned_cols=329 Identities=30% Similarity=0.462 Sum_probs=278.9
Q ss_pred cccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEee-cccccccccCCcCCCCCCCCCCCCeeeee
Q psy1366 7 LHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKA-DFEQFYSIANPLSCGSPSSCDGTNFSPVT 85 (345)
Q Consensus 7 ~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~-~~~~~~~~~~p~~C~~~~~C~~~~f~~l~ 85 (345)
+...|-+.|.++|++|+++|||+++|-++|++.+.++.|+.-+...+-.. +......+..+..-|. ..-+++... .
T Consensus 108 hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~~p~~svYPT-~De~gN~L~--T 184 (818)
T KOG0479|consen 108 HVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTTLPTGSVYPT-RDEDGNLLE--T 184 (818)
T ss_pred ccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecccccCCcCCc-cCCCCCeee--E
Confidence 34456678999999999999999999999999999999999886543221 1100111222222332 122222222 2
Q ss_pred cCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeecccCccceeEEEeeeceee
Q psy1366 86 SVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPVVKGVRSDIELCLSANYLT 163 (345)
Q Consensus 86 ~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~~~~~~~~~~~~i~a~~i~ 163 (345)
+...|.|.|+|.|.|||+| .|.|++||+++|+|++||||+|+|||+|.|.|+|+.-...........|.+++-||+|.
T Consensus 185 EyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~ 264 (818)
T KOG0479|consen 185 EYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNIE 264 (818)
T ss_pred eecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCCcccceeEEEEEeccHH
Confidence 3677889999999999999 89999999999999999999999999999999997432111112235689999999998
Q ss_pred eeccCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeecee
Q psy1366 164 VCNDQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLL 243 (345)
Q Consensus 164 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iL 243 (345)
...+.. ...++.+++..++++.++ +|++ +.|..|+||+||||+.+|+||+|.|.||+.++.++|+++||+||||
T Consensus 265 ~l~ke~-~~~~t~~Di~~i~klsk~--kdiF---dlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiL 338 (818)
T KOG0479|consen 265 LLSKEA-APDFTDEDIRNIKKLSKK--KDIF---DLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINIL 338 (818)
T ss_pred hhcccc-cccCChhhHHHHHHHHhc--CCHH---HHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEE
Confidence 877753 457889999999998763 5665 7899999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHH
Q psy1366 244 LVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSI 321 (345)
Q Consensus 244 l~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l 321 (345)
|+|||.++||||||++...+|+++-++|.+|+++||||+++-| +|+-.++|||+||||.||+||||||||+..++.++
T Consensus 339 lvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAI 418 (818)
T KOG0479|consen 339 LVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAI 418 (818)
T ss_pred EecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHH
Confidence 9999999999999999999999999999999999999999855 69999999999999999999999999999999999
Q ss_pred HHHHhCCEEEEeeCCeEEEeccC
Q psy1366 322 HEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 322 ~eame~~~i~i~k~gi~~~l~ar 344 (345)
||+||||+|+|+||||+++||||
T Consensus 419 HEVMEQqtVTIaKAGIHasLNAR 441 (818)
T KOG0479|consen 419 HEVMEQQTVTIAKAGIHASLNAR 441 (818)
T ss_pred HHHHhcceEEeEeccchhhhccc
Confidence 99999999999999999999998
No 8
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.9e-68 Score=531.71 Aligned_cols=327 Identities=34% Similarity=0.556 Sum_probs=287.9
Q ss_pred ccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC-eeeeec
Q psy1366 8 HRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN-FSPVTS 86 (345)
Q Consensus 8 ~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~-f~~l~~ 86 (345)
...|.+++.++||||+|+|+|+|+|+++|++.+++|+|.+||+.+.+.+. .+.+.+|..|++ ..|++.+ |.+.
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~---~~~~~~p~~C~~-~~C~~~~~f~l~-- 76 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQ---SGRETEPTVCPP-RECQSPTPFSLN-- 76 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEec---CCcccCCCcCCC-CcCCCCCceEec--
Confidence 35678999999999999999999999999999999999999998877653 357889999987 4699876 5544
Q ss_pred CCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeee-eeec--ccCccceeEEEeeece
Q psy1366 87 VDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRR-WRPV--VKGVRSDIELCLSANY 161 (345)
Q Consensus 87 ~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~-~~~~--~~~~~~~~~~~i~a~~ 161 (345)
.+.+.|+|||+|+|||+| +|.|++||+++|+|++||||+|+|||+|+|+|||+.+ |... ..+..+.+.++++|++
T Consensus 77 ~~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~ 156 (509)
T smart00350 77 HERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANH 156 (509)
T ss_pred cCCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeE
Confidence 567889999999999999 8899999999999999999999999999999999976 4322 2222345889999999
Q ss_pred eeeeccC--CCC-----cccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCC
Q psy1366 162 LTVCNDQ--SSS-----LVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGS 234 (345)
Q Consensus 162 i~~~~~~--~~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~ 234 (345)
|+..+.. +.. ..+++++.++|.++++ ++. .++.|++|++|.|+|++.+|+|++++|+||+.+...+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~-~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~ 231 (509)
T smart00350 157 VRKLDYKRSFEDCSFSVQSLSDEEEEEIRKLSK----DPD-IYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGM 231 (509)
T ss_pred EEEccccccccccccccccCCHHHHHHHHHHhc----CHH-HHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCc
Confidence 9876542 111 2478888888887764 333 358999999999999999999999999999999999999
Q ss_pred ceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCC
Q psy1366 235 KVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSS 312 (345)
Q Consensus 235 ~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk 312 (345)
++|+++||||+|+||||||++|+++++++|+..|++|.+++.+|++++..++ +|+|.+++|++++|++|+|||||||+
T Consensus 232 ~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~ 311 (509)
T smart00350 232 KIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDK 311 (509)
T ss_pred cccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhh
Confidence 9999999999999999999999999999999999999888889999988777 48899999999999999999999999
Q ss_pred CCHHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 313 IKEHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 313 ~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
|++.+|.+|+|+||+|+|+|+|+|+.++|++|.
T Consensus 312 l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 312 MDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 999999999999999999999999999999873
No 9
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=6e-67 Score=534.34 Aligned_cols=328 Identities=28% Similarity=0.384 Sum_probs=281.6
Q ss_pred cccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCC-----------CCcEEEEeecccccccccCCcCCCCC
Q psy1366 5 PQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTK-----------CKQCFYVKADFEQFYSIANPLSCGSP 73 (345)
Q Consensus 5 ~~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~-----------C~~~~~~~~~~~~~~~~~~p~~C~~~ 73 (345)
|.....|.+++.++||||+|+|+|+|+|.++|.+..++|+|.. |++.....+. .+.+.+|..|+
T Consensus 213 ~~~~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~---~g~~~~P~~C~-- 287 (915)
T PTZ00111 213 PVSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVI---QGEVNEPLLCN-- 287 (915)
T ss_pred CCCCCcccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCcccccccc---CCcccCCCCCC--
Confidence 3445677899999999999999999999999999999999996 6654433221 34678899996
Q ss_pred CCCCCCC-eeeeecCCCCceeeeeeEEEeeec--CCCCCCc--------------------eEEEEEEecCccccccCCC
Q psy1366 74 SSCDGTN-FSPVTSVDQDNYKDYQEIKIQERA--AGVGSVP--------------------KSIWVTLEDDLVDLARPGD 130 (345)
Q Consensus 74 ~~C~~~~-f~~l~~~~~~~~~d~Q~IriQE~~--~~~g~~p--------------------rsi~V~l~~dlv~~~~pGd 130 (345)
.|++.+ |.++ .+.+.|+|||+|+|||+| +|.|++| |+++|+|++||||.|+|||
T Consensus 288 -~C~~~~~f~l~--~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGD 364 (915)
T PTZ00111 288 -ECNSKYTFELN--HNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGD 364 (915)
T ss_pred -CCCCCCCeEEc--cCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCC
Confidence 598765 7766 567899999999999999 7999999 9999999999999999999
Q ss_pred EEEEEEEEeeeeeecc---cCccceeEEEeeeceeeeeccCC------------CCcccCHHHHHHHHHHHHhhccChhh
Q psy1366 131 DVIVCGAVLRRWRPVV---KGVRSDIELCLSANYLTVCNDQS------------SSLVITPELRAEVTQFWEDHKYDGLA 195 (345)
Q Consensus 131 ~V~i~Gil~~~~~~~~---~~~~~~~~~~i~a~~i~~~~~~~------------~~~~~~~e~~~~~~~~~~~~~~~~~~ 195 (345)
+|+|||||+..+.... .+..+.|.+|+.|++|+..+... ....++++++++|.++.+ +|.
T Consensus 365 rV~VtGIl~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~----~p~- 439 (915)
T PTZ00111 365 RVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSR----NPM- 439 (915)
T ss_pred EEEEEEEEEeccccccccccccccccceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhc----CHH-
Confidence 9999999987642211 12346789999999998754311 224588888888887754 444
Q ss_pred HHHHHHhccCcccccchHHHHHHHHHHhCCCcccC-----CCC----CceeeeeceeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 196 ARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGG-----EDG----SKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 196 ~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~-----~~~----~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
.++.|++|+||+|+|++.+|+||+|+|+||+.+.. ++| +++|+++||||+||||||||++|+++++++||.
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 35889999999999999999999999999997643 344 789999999999999999999999999999999
Q ss_pred EEEcCCccCcCCceEEEE-ee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEecc
Q psy1366 267 VLTTGVGTTTAGLTVSAL-RE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKV 343 (345)
Q Consensus 267 ~~~~~~~~~~~glt~~~~-~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~a 343 (345)
+|++|.+++.+|+++.+. ++ .|+|.+++|++++|++|+||||||++|++.+|.+|||+||||+|+|+|+|+.++|+|
T Consensus 520 ~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~a 599 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKA 599 (915)
T ss_pred ccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCC
Confidence 999999999999999876 43 478999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy1366 344 KS 345 (345)
Q Consensus 344 r~ 345 (345)
|.
T Consensus 600 r~ 601 (915)
T PTZ00111 600 ET 601 (915)
T ss_pred Ce
Confidence 84
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=2.8e-43 Score=334.09 Aligned_cols=150 Identities=51% Similarity=0.895 Sum_probs=131.5
Q ss_pred HHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC
Q psy1366 196 ARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT 275 (345)
Q Consensus 196 ~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~ 275 (345)
.++.|++|+||+|+|++.+|+|++|+|+||+.+..++|++.|+++||||+||||||||+|++++++++|+++|++|.+++
T Consensus 14 ~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s 93 (331)
T PF00493_consen 14 IFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSS 93 (331)
T ss_dssp HHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGST
T ss_pred HHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccCC
Q psy1366 276 TAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVKS 345 (345)
Q Consensus 276 ~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar~ 345 (345)
.+|||+++.|+ +++|.++||++++||+|||||||||+|+++++.+||||||||+|+|+|||+.++||||+
T Consensus 94 ~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 94 AAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred cCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 99999999998 58899999999999999999999999999999999999999999999999999999985
No 11
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.83 E-value=1.8e-20 Score=164.09 Aligned_cols=125 Identities=25% Similarity=0.396 Sum_probs=91.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC----CccCcCC---
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG----VGTTTAG--- 278 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~----~~~~~~g--- 278 (345)
.+|.||+.+|+|+.++..|+ .|+||+|+||||||++++.+..++|.--.... .--+.+|
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 57999999999999999998 69999999999999999999999986221111 1111111
Q ss_pred ---ceE-EEEee-----------cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEecc
Q psy1366 279 ---LTV-SALRE-----------NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKV 343 (345)
Q Consensus 279 ---lt~-~~~~~-----------~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~a 343 (345)
+.. .-.+. +|.....||.+.+||+||+|+||+..+++...++|+++||++.|+|.++|...+++|
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa 148 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPA 148 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB-
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEec
Confidence 100 00010 123367899999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy1366 344 K 344 (345)
Q Consensus 344 r 344 (345)
+
T Consensus 149 ~ 149 (206)
T PF01078_consen 149 R 149 (206)
T ss_dssp -
T ss_pred c
Confidence 6
No 12
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.69 E-value=9.8e-17 Score=151.83 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=97.9
Q ss_pred cccccchHHHHHHHHHHh-CCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC------------
Q psy1366 206 PAIYGLYLVKLCLAVVLA-GGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV------------ 272 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~-~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~------------ 272 (345)
..|.|++.+|++++++++ .|. .|+||.|+||||||++++.+++++|.--...+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~-------------~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGI-------------GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCC-------------CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 468999999999998875 220 399999999999999999999999741111110
Q ss_pred ---------------------ccCcCCceEEEEe----ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 ---------------------GTTTAGLTVSALR----ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 ---------------------~~~~~glt~~~~~----~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+.+...++.+..- ..|++.+++|.+..|++|++||||++.++++.|++|+++|++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 0011112222111 137788999999999999999999999999999999999999
Q ss_pred CEEEEeeCCeEEEeccC
Q psy1366 328 QTISVAKDKESKKVKVK 344 (345)
Q Consensus 328 ~~i~i~k~gi~~~l~ar 344 (345)
+++++...|....+++|
T Consensus 155 ~~v~v~r~G~~~~~p~r 171 (334)
T PRK13407 155 GENVVEREGLSIRHPAR 171 (334)
T ss_pred CCeEEEECCeEEecCCC
Confidence 99999999988888775
No 13
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.1e-17 Score=157.70 Aligned_cols=125 Identities=24% Similarity=0.354 Sum_probs=100.4
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-----EEEcCCccCc---
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-----VLTTGVGTTT--- 276 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-----~~~~~~~~~~--- 276 (345)
+.+|.||+..|+|+..+..|| +|+||+||||||||+|++.+..++|.- +.++...|..
T Consensus 178 ~~DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~ 243 (490)
T COG0606 178 FKDVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDL 243 (490)
T ss_pred hhhhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccc
Confidence 457999999999999999999 799999999999999999999999861 1111111000
Q ss_pred --------------CCceEEE--EeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEE
Q psy1366 277 --------------AGLTVSA--LRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKK 340 (345)
Q Consensus 277 --------------~glt~~~--~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~ 340 (345)
.+.+++. +- +|.-..+||.+.+||+||+||||+-..+....++|.+.||++.|.|+.++-.++
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLv-GGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ 322 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALV-GGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322 (490)
T ss_pred cccCccceeCCccCCCccchHHHHh-CCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeE
Confidence 1112211 11 233457899999999999999999999999999999999999999999999999
Q ss_pred eccC
Q psy1366 341 VKVK 344 (345)
Q Consensus 341 l~ar 344 (345)
.+||
T Consensus 323 ypa~ 326 (490)
T COG0606 323 YPAR 326 (490)
T ss_pred Eeee
Confidence 8886
No 14
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.64 E-value=1.2e-15 Score=144.63 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=99.0
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC--------------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG-------------- 271 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~-------------- 271 (345)
..|.||+.+|++++++++.... -|+||.|+||+|||++++.++.+.|..--..+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~------------g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKI------------GGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCC------------CeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 4689999999999999987310 28999999999999999999998864110000
Q ss_pred ------------------------C--ccCcCCceEEEEe----ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHH
Q psy1366 272 ------------------------V--GTTTAGLTVSALR----ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSI 321 (345)
Q Consensus 272 ------------------------~--~~~~~glt~~~~~----~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l 321 (345)
. +.+...++.+..- ..|.|.+++|.+..|++|++||||++.+++..|..|
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 0 0111123332211 147899999999999999999999999999999999
Q ss_pred HHHHhCCEEEEeeCCeEEEeccC
Q psy1366 322 HEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 322 ~eame~~~i~i~k~gi~~~l~ar 344 (345)
+++|+++.+++...|...++++|
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r 174 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPAR 174 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCC
Confidence 99999999999999988777766
No 15
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.62 E-value=9.1e-16 Score=145.61 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=97.3
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-------------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV------------- 272 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~------------- 272 (345)
..|.||+.+|+|++++++...- -++||.|++|||||+++|.++++++..-...+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~------------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKI------------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCC------------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 4789999999999999986411 279999999999999999999998752211110
Q ss_pred ---------------------------ccCcCCceEEE----EeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHH
Q psy1366 273 ---------------------------GTTTAGLTVSA----LRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSI 321 (345)
Q Consensus 273 ---------------------------~~~~~glt~~~----~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l 321 (345)
+.+...|..+. .-.++.+.+++|.+..|++|++||||++.+++..|..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 00000011100 01135667789999999999999999999999999999
Q ss_pred HHHHhCCEEEEeeCCeEEEeccC
Q psy1366 322 HEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 322 ~eame~~~i~i~k~gi~~~l~ar 344 (345)
+++|+++++++.+.|....+++|
T Consensus 165 Leam~e~~~~ier~G~s~~~p~r 187 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPAR 187 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCC
Confidence 99999999999999988777775
No 16
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.61 E-value=2.6e-15 Score=154.25 Aligned_cols=128 Identities=22% Similarity=0.229 Sum_probs=99.4
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-------------------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR------------------- 265 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~------------------- 265 (345)
+..|+||+.+|++++++++.+.. -+|||.|+||||||++++++++++|.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~------------g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI------------GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC------------CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 35799999999999999996510 27999999999999999999999962
Q ss_pred ----------------eEEEcCCccCcCCceEEEE----eecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHH
Q psy1366 266 ----------------SVLTTGVGTTTAGLTVSAL----RENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAM 325 (345)
Q Consensus 266 ----------------~~~~~~~~~~~~glt~~~~----~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eam 325 (345)
++...-.+.+...|..... -..|.+.+.+|.|..|++|++||||++++++..|+.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 1111111111111222110 11356788899999999999999999999999999999999
Q ss_pred hCCEEEEeeCCeEEEeccC
Q psy1366 326 EQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 326 e~~~i~i~k~gi~~~l~ar 344 (345)
|++.+.+.+.|...++++|
T Consensus 151 e~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred hcCCEEEEECCceeeecCC
Confidence 9999999999998887765
No 17
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.60 E-value=1.5e-15 Score=151.06 Aligned_cols=126 Identities=25% Similarity=0.345 Sum_probs=97.7
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---E-EEcCCccCcCCce
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---V-LTTGVGTTTAGLT 280 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~-~~~~~~~~~~glt 280 (345)
+.+|+|++.+++++.+++.+| .|++|+|+||+|||++++.++.++|.. . .......+.+|..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~~g--------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~ 256 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAAGG--------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKL 256 (499)
T ss_pred HHHhcCcHHHHhhhhhhccCC--------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhh
Confidence 357899999999999999887 599999999999999999999988752 1 1111111111111
Q ss_pred E---------------EEEee---cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEec
Q psy1366 281 V---------------SALRE---NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVK 342 (345)
Q Consensus 281 ~---------------~~~~~---~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ 342 (345)
. +.... +|.+...||.+.+|++|+|||||++++++..|..|+++||++.|+|.++|...+++
T Consensus 257 ~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~p 336 (499)
T TIGR00368 257 IDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYP 336 (499)
T ss_pred ccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceecc
Confidence 0 00010 24456789999999999999999999999999999999999999999999887776
Q ss_pred cC
Q psy1366 343 VK 344 (345)
Q Consensus 343 ar 344 (345)
++
T Consensus 337 a~ 338 (499)
T TIGR00368 337 AR 338 (499)
T ss_pred CC
Confidence 64
No 18
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.56 E-value=1.2e-14 Score=147.81 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe--EEEcCCccCcCCceEEEE----e
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS--VLTTGVGTTTAGLTVSAL----R 285 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~--~~~~~~~~~~~glt~~~~----~ 285 (345)
+.+|+|++|..+...- -||||.|+||||||++++++++++|+. +.......+...|..... -
T Consensus 1 ~~~~~Al~l~av~p~~------------g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPSL------------GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCCc------------ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 4689999999887621 299999999999999999999999874 222222223333333221 1
Q ss_pred ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 286 ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 286 ~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
..|.|.+++|.|..|++|++||||++++++..|..|+++|+++++++.+.|...+++++
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~ 127 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAK 127 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCc
Confidence 24678899999999999999999999999999999999999999999999988777664
No 19
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.54 E-value=9.1e-15 Score=144.96 Aligned_cols=125 Identities=22% Similarity=0.346 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-----EEEcCCcc------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-----VLTTGVGT------ 274 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-----~~~~~~~~------ 274 (345)
..++|++.+++++.++..+| .|++|+|+||+|||+|++.++.+.|.. +.++...+
T Consensus 191 ~~v~Gq~~~~~al~laa~~G--------------~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~ 256 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG--------------HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAES 256 (506)
T ss_pred EEEECcHHHHhhhheeccCC--------------cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccc
Confidence 46789999999999998887 599999999999999999999988752 11111111
Q ss_pred CcCCceE--------EEEee---cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEecc
Q psy1366 275 TTAGLTV--------SALRE---NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKV 343 (345)
Q Consensus 275 ~~~glt~--------~~~~~---~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~a 343 (345)
...+++. ++... +|.+...||.+.+||+|++||||++.+++..|..|+++||++.++|.+.|...++++
T Consensus 257 ~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 257 VQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred ccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 1111100 00000 356778999999999999999999999999999999999999999999998888776
Q ss_pred C
Q psy1366 344 K 344 (345)
Q Consensus 344 r 344 (345)
+
T Consensus 337 ~ 337 (506)
T PRK09862 337 R 337 (506)
T ss_pred C
Confidence 5
No 20
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.52 E-value=3.2e-14 Score=139.03 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=94.0
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~ 274 (345)
..+.+.+...|+|++++.+.++.++..| -|+||.|+||||||++++++++.+.+. .+.....+
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aalag--------------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft 77 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 77 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHccC--------------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec
Confidence 4577788889999977666666665555 399999999999999999999987642 12222212
Q ss_pred CcCCceEE----EEeecCeeE-eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 275 TTAGLTVS----ALRENGEWH-LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 275 ~~~glt~~----~~~~~~~~~-~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
+...++.. ..++.+.|. ..+|.+..|+ ++|+|||+++++..|++|+++|+++.+++ +|....++.|
T Consensus 78 tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~r 148 (498)
T PRK13531 78 TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMR 148 (498)
T ss_pred CcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCc
Confidence 22333332 122345563 6678777776 99999999999999999999999999986 6666666654
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.50 E-value=3.7e-14 Score=125.38 Aligned_cols=114 Identities=23% Similarity=0.355 Sum_probs=68.9
Q ss_pred HHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCc
Q psy1366 200 ILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGL 279 (345)
Q Consensus 200 l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~gl 279 (345)
+.-.-..+++||+.++.-+...+-....+. ..-.|+||+||||+|||+||+.+|+.+...+.......
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~----- 85 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA----- 85 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-----
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchh-----
Confidence 333445689999999876654443221100 01139999999999999999999999987765432111
Q ss_pred eEEEEeecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 280 TVSALRENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 280 t~~~~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
....++. ++.+ .+..+-|+|||||+++++.+|+.|+.+||++.|.|
T Consensus 86 ----i~k~~dl---~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idi 132 (233)
T PF05496_consen 86 ----IEKAGDL---AAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDI 132 (233)
T ss_dssp ------SCHHH---HHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEE
T ss_pred ----hhhHHHH---HHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEE
Confidence 0100000 1111 12457799999999999999999999999999965
No 22
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.44 E-value=2.1e-13 Score=110.33 Aligned_cols=90 Identities=22% Similarity=0.353 Sum_probs=61.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc-CCc-cCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT-GVG-TTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~-~~~-~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
|+||.|.||+|||++++++++.....+... ... -....++....-+ .+.|.+.+|.+. .+|+++|||++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 899999999999999999999988755322 111 0112222222222 478889999988 579999999999999
Q ss_pred hHHHHHHHHhCCEEEEe
Q psy1366 317 DRTSIHEAMEQQTISVA 333 (345)
Q Consensus 317 ~~~~l~eame~~~i~i~ 333 (345)
.|++|+|+|++++|++.
T Consensus 78 tQsAlLeam~Er~Vt~~ 94 (131)
T PF07726_consen 78 TQSALLEAMEERQVTID 94 (131)
T ss_dssp HHHHHHHHHHHSEEEET
T ss_pred HHHHHHHHHHcCeEEeC
Confidence 99999999999999973
No 23
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.43 E-value=3.6e-13 Score=128.16 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=101.7
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC--------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT-------- 275 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~-------- 275 (345)
.+..+.|+|.+|+++.+..+.- .. -.+|+-|+.|||||+++|+++.++|....+.|....
T Consensus 15 pf~aivGqd~lk~aL~l~av~P--~i----------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP--QI----------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc--cc----------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 4567899999999999986542 11 279999999999999999999999975544443100
Q ss_pred -----------------------cCCceEEEEee-------------cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHH
Q psy1366 276 -----------------------TAGLTVSALRE-------------NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRT 319 (345)
Q Consensus 276 -----------------------~~glt~~~~~~-------------~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~ 319 (345)
-.++...++.| .|.-.++||.|..||+||+++||++.++++.++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 01111111111 266788999999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 320 SIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 320 ~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
+||++|+.|.-.|...|+..+++||
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~ 187 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPAR 187 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCcc
Confidence 9999999999999999999999987
No 24
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.42 E-value=7e-13 Score=126.27 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=96.3
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc----
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG---- 273 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~---- 273 (345)
..+...+.+.++|.+.+..+++.++..| -|+||.|+||||||.|++.+++.+...+...-..
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~--------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~ 81 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAG--------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL 81 (329)
T ss_pred HHHHhhcCCeeeccHHHHHHHHHHHHcC--------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 3455667777899988888877777666 3999999999999999999999998654333221
Q ss_pred -cCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCC
Q psy1366 274 -TTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 274 -~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~g 336 (345)
+...|......+. .+.+.+.+|.+..+.++++++|||++.+++.|++|+++|+++++++..-+
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~ 147 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLT 147 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcC
Confidence 1222222221111 56788899999988889999999999999999999999999999987655
No 25
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.39 E-value=9.9e-13 Score=133.02 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC--eEEEcCCccCcCCceEEE----E
Q psy1366 211 LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR--SVLTTGVGTTTAGLTVSA----L 284 (345)
Q Consensus 211 ~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~--~~~~~~~~~~~~glt~~~----~ 284 (345)
++.+|+|++|..+..... --|||-|++||+||++++.++.++|. ++...-.+.+...|.... .
T Consensus 8 ~~~~~~Al~l~av~p~~~-----------gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAGL-----------GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcccc-----------ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 799999999998864110 16999999999999999999999986 333333333333333222 1
Q ss_pred eecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 285 RENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 285 ~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
-..|.-.++||.|.+||+||+||||++.+++..+++|+++||++.|+|...|...++++|
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~ 136 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPAR 136 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCC
Confidence 112444588999999999999999999999999999999999999999999999999986
No 26
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.34 E-value=7.5e-13 Score=128.95 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCC---C-CCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGE---D-GSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG 273 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~---~-~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~ 273 (345)
..|.+.|...|+|++.+|+++..++.....+... . ........|+||+||||||||++++++++.+..++......
T Consensus 63 ~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~ 142 (412)
T PRK05342 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT 142 (412)
T ss_pred HHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3455566667999999999998887532111100 0 01112346999999999999999999999887766544322
Q ss_pred c-CcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHH--------------hHHHHHHHHhCCEEEEee
Q psy1366 274 T-TTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEH--------------DRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 274 ~-~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~--------------~~~~l~eame~~~i~i~k 334 (345)
. +..|+....... ..-+....+.+..+.+||+||||+|+++.. .|++|+++||...+.++.
T Consensus 143 ~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 143 TLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 1 112211110000 000001123445678999999999999753 789999999987777743
No 27
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=2e-12 Score=126.32 Aligned_cols=114 Identities=19% Similarity=0.316 Sum_probs=86.9
Q ss_pred hccCcccccc-hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---EE---------
Q psy1366 202 ASICPAIYGL-YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---VL--------- 268 (345)
Q Consensus 202 ~s~~p~i~G~-~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~--------- 268 (345)
..-+.+|.|. ..+..++.++-... +.+.+||+.|++||||..+|+++++.++|. +.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3456788887 66777777775544 345799999999999999999999999982 11
Q ss_pred ---EcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 269 ---TTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 269 ---~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
.+-..++..|-+..+.+.+ ++|.+.+||+|.+|+|||..|+...|..|+.++++++|-
T Consensus 310 ~LlESELFGye~GAFTGA~~~G-----K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~ 370 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGG-----KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIE 370 (560)
T ss_pred HHHHHHHhCcCCccccccccCC-----CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEE
Confidence 1111334445444333322 389999999999999999999999999999999998764
No 28
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.33 E-value=1.5e-12 Score=108.33 Aligned_cols=98 Identities=29% Similarity=0.440 Sum_probs=72.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC--CccCcCCceEEEEeecCeeEeeeceeeec--CCcEEEEcCCCCCCHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG--VGTTTAGLTVSALRENGEWHLEAGALVLS--DGGVCCIDEFSSIKEH 316 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~--~~~~~~glt~~~~~~~~~~~~~~G~l~la--~~gi~~IDEidk~~~~ 316 (345)
||||+||||+|||++++++++.++..++... ..++...|...+.-..+.....+|.++.| ++++++||||++++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 6999999999999999999999987764432 22344445444443355666778888855 6899999999999999
Q ss_pred hHHHHHHHHhCCEEEEeeCCeE
Q psy1366 317 DRTSIHEAMEQQTISVAKDKES 338 (345)
Q Consensus 317 ~~~~l~eame~~~i~i~k~gi~ 338 (345)
.+..|+.++|++.+.+...+-.
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~ 102 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEE 102 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSE
T ss_pred HHHHHHHHHhhCcccccCCCcE
Confidence 9999999999999987665543
No 29
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.31 E-value=1.2e-11 Score=124.79 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=81.4
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC----------eE-EEcCC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR----------SV-LTTGV 272 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~----------~~-~~~~~ 272 (345)
-+.+++|++...+++..++.+.. ..|+||+||||||||++|+++++.+.+ ++ .....
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 34479999888888887776542 149999999999999999999875321 11 11211
Q ss_pred c--cCcCCce----EEE----Ee------ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 273 G--TTTAGLT----VSA----LR------ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 273 ~--~~~~glt----~~~----~~------~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
. .+..++. .+. .. ..+.....+|++..|++|++||||+++|+++.|+.|+.+||++.+.+.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeec
Confidence 0 0111110 000 00 011223457888899999999999999999999999999999988764
No 30
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.30 E-value=1e-12 Score=113.07 Aligned_cols=103 Identities=19% Similarity=0.328 Sum_probs=68.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCc-----CCceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTT-----AGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~-----~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||.|++||||+.+|+++++.++| ++......+.. ..|+... +. .+.....+|.+..|++|++||||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~-~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE-KGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC-SSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc-cccccccccccCCceeeccceEEeecc
Confidence 59999999999999999999999876 23222211111 1122211 10 11223457999999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEecc
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKV 343 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~i~k~gi~~~l~a 343 (345)
|+.|+++.|..|+++|+++++.-..+.-..+++.
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhhhHHHHHHHHHHHHhhchhccccccccccccc
Confidence 9999999999999999999876443333333333
No 31
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.25 E-value=5.4e-12 Score=122.46 Aligned_cols=135 Identities=20% Similarity=0.224 Sum_probs=84.5
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccC-----C-CCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGG-----E-DGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~-----~-~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
..|.+.+...|+||+.+|+++..++.....+.. . +.....+..|+||+||||+|||.+++++++.+..++....
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 456667777899999999999998853211110 0 0001123469999999999999999999998865554332
Q ss_pred Ccc-CcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCH--------------HhHHHHHHHHhCCEEEE
Q psy1366 272 VGT-TTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKE--------------HDRTSIHEAMEQQTISV 332 (345)
Q Consensus 272 ~~~-~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~--------------~~~~~l~eame~~~i~i 332 (345)
... +..|+......+ .......++.+..+.+||+||||+|++.+ ..|++|+++||...+.+
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 111 112221110000 00000124455667899999999999987 68999999997443333
No 32
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.5e-11 Score=111.40 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=78.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
.+.+||+.+|.-+.+.+-+...+...- =|+||+||||+|||+||..+|+.++..+.++..+.-. |
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~l-------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--------K 90 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEAL-------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--------K 90 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCc-------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--------C
Confidence 457899999998888877653221111 2999999999999999999999988776554322110 1
Q ss_pred ecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 286 ENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 286 ~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
.++. ++.| .+..+-|+|||||+++++..-..|+.|||+-.+-|-
T Consensus 91 -~gDl---aaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 91 -PGDL---AAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDII 135 (332)
T ss_pred -hhhH---HHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEE
Confidence 0110 1111 234577999999999999999999999999887664
No 33
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.20 E-value=3.5e-11 Score=110.98 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=66.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc-CCcc-CcCCceEEE----------------Eee--cCeeEeeeceeee
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT-GVGT-TTAGLTVSA----------------LRE--NGEWHLEAGALVL 299 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~-~~~~-~~~glt~~~----------------~~~--~~~~~~~~G~l~l 299 (345)
.|+||.|+||||||++++++++.++..+... +... ....+.... .+. .......+|.+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 3999999999999999999998877655432 2211 111111000 000 0112234777765
Q ss_pred --cCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEee
Q psy1366 300 --SDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 300 --a~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k 334 (345)
+++++++||||++++++.|+.|+++||++.+++..
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~ 138 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPG 138 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccC
Confidence 57899999999999999999999999999998864
No 34
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=1.4e-10 Score=108.86 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=72.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc-----cCcCCceEEEEeec-CeeEeeeceeeec--CCcEEEEcCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG-----TTTAGLTVSALREN-GEWHLEAGALVLS--DGGVCCIDEFSS 312 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~-----~~~~glt~~~~~~~-~~~~~~~G~l~la--~~gi~~IDEidk 312 (345)
||||.|+||||||++++.+++.+...++..... ....|-.....+++ ..+.+..|.+..| +++++++||||.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~ 145 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDA 145 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhc
Confidence 999999999999999999999998766543321 12234333333343 2356688888765 578899999999
Q ss_pred CCHHhHHHHHHHHh-CCEEEEeeCC
Q psy1366 313 IKEHDRTSIHEAME-QQTISVAKDK 336 (345)
Q Consensus 313 ~~~~~~~~l~eame-~~~i~i~k~g 336 (345)
++++.+.+|+.+|| .+.+++...+
T Consensus 146 a~p~~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 146 GRPDVMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred cCHHHHHHHHHHhccCCeEEECCCc
Confidence 99999999999999 5688886544
No 35
>CHL00181 cbbX CbbX; Provisional
Probab=99.14 E-value=3.3e-11 Score=112.42 Aligned_cols=123 Identities=22% Similarity=0.304 Sum_probs=74.7
Q ss_pred HHHHhccCcccccchHHHHHHHHHH----hCCCcccCCCCCc-eeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVL----AGGVGRGGEDGSK-VRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV 272 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l----~~g~~~~~~~~~~-~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~ 272 (345)
..+.+++.++++|++.+|+.+.-.. +....+. -|.. .+...|+||+||||||||++|+++++.+... |.
T Consensus 15 ~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~--~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~----g~ 88 (287)
T CHL00181 15 QEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN--LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL----GY 88 (287)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc----CC
Confidence 5688889999999999998663221 1110010 1111 1223699999999999999999998875321 00
Q ss_pred ccCcCCceEEEEeec--CeeE-----eeeceeeecCCcEEEEcCCCCC---------CHHhHHHHHHHHhCC
Q psy1366 273 GTTTAGLTVSALREN--GEWH-----LEAGALVLSDGGVCCIDEFSSI---------KEHDRTSIHEAMEQQ 328 (345)
Q Consensus 273 ~~~~~glt~~~~~~~--~~~~-----~~~G~l~la~~gi~~IDEidk~---------~~~~~~~l~eame~~ 328 (345)
...+-...+..+. +.|. ...+.+..|.+||+||||++.+ ..+.+..|+..||++
T Consensus 89 --~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 89 --IKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred --CCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 0000011111100 1110 0123455678999999999986 567789999999875
No 36
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.7e-11 Score=121.45 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=80.6
Q ss_pred HHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCc
Q psy1366 200 ILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGL 279 (345)
Q Consensus 200 l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~gl 279 (345)
...-|..+.||.+.||..|+-.|.-...... ..| .-++|+||||+|||+|++.+|+.+.|.++-...++....-
T Consensus 317 a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~-----~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEA 390 (782)
T COG0466 317 AEKILDKDHYGLEKVKERILEYLAVQKLTKK-----LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEA 390 (782)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHhcc-----CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHH
Confidence 3456788999999999999877764422211 122 4799999999999999999999999977655333211100
Q ss_pred eEEEEeec--CeeEeeeceeee------cCCcEEEEcCCCCCCHHhH----HHHHHHHh
Q psy1366 280 TVSALREN--GEWHLEAGALVL------SDGGVCCIDEFSSIKEHDR----TSIHEAME 326 (345)
Q Consensus 280 t~~~~~~~--~~~~~~~G~l~l------a~~gi~~IDEidk~~~~~~----~~l~eame 326 (345)
-....|.+ |. .||.++. ..+.+++|||||||..+.| +||+|+++
T Consensus 391 EIRGHRRTYIGa---mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 391 EIRGHRRTYIGA---MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred Hhcccccccccc---CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 00001111 22 2666644 3578999999999987665 89999995
No 37
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-10 Score=111.89 Aligned_cols=93 Identities=23% Similarity=0.396 Sum_probs=68.7
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCe----EEEcC--CccCc--CCceEEEEee--cCeeEeeeceeeecCCcEEEE
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTG--VGTTT--AGLTVSALRE--NGEWHLEAGALVLSDGGVCCI 307 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~--~~~~~--~glt~~~~~~--~~~~~~~~G~l~la~~gi~~I 307 (345)
++.+|||.|++||||..+||+|++++||. ++.+- ...+. ..|+.-. |. +|-+.-..|.+.+||||.+|+
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFL 323 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFL 323 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEec
Confidence 34799999999999999999999999983 22221 11110 1111110 11 133445689999999999999
Q ss_pred cCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 308 DEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 308 DEidk~~~~~~~~l~eame~~~i~ 331 (345)
|||..|+...|..|+.++++|.|.
T Consensus 324 DEIGelPL~lQaKLLRvLQegEie 347 (550)
T COG3604 324 DEIGELPLALQAKLLRVLQEGEIE 347 (550)
T ss_pred hhhccCCHHHHHHHHHHHhhccee
Confidence 999999999999999999998775
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.09 E-value=8.2e-11 Score=111.23 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=73.1
Q ss_pred cccccchHHH---HHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC-CccCcCCceE
Q psy1366 206 PAIYGLYLVK---LCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG-VGTTTAGLTV 281 (345)
Q Consensus 206 p~i~G~~~vk---~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~-~~~~~~glt~ 281 (345)
.+++||+++- +.|--++-+|.- .+++|+||||||||+|++.++..+...+.... ..+....+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l------------~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdl-- 89 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHL------------HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDL-- 89 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCC------------ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHH--
Confidence 4688887652 334444444411 48999999999999999999998887665432 21111111
Q ss_pred EEEeecCeeEeee-ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeC
Q psy1366 282 SALRENGEWHLEA-GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 282 ~~~~~~~~~~~~~-G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~ 335 (345)
|+ -.-++ -......+-|+||||++++++.+|++|+..||+++|.+--|
T Consensus 90 ---r~---i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGA 138 (436)
T COG2256 90 ---RE---IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGA 138 (436)
T ss_pred ---HH---HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEec
Confidence 10 00001 00111235699999999999999999999999999988554
No 39
>KOG2004|consensus
Probab=99.08 E-value=1.2e-10 Score=116.47 Aligned_cols=115 Identities=25% Similarity=0.341 Sum_probs=81.3
Q ss_pred hccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceE
Q psy1366 202 ASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTV 281 (345)
Q Consensus 202 ~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~ 281 (345)
.-+..+.||+++||+.|+-.+.-|.-+..-.| --++|+||||+|||+++|.+|+.++|-++.-.. .|++-
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qG------kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv----GG~tD 476 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGSVQG------KILCFVGPPGVGKTSIAKSIARALNRKFFRFSV----GGMTD 476 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhcccCCC------cEEEEeCCCCCCcccHHHHHHHHhCCceEEEec----ccccc
Confidence 35788999999999999888776633333222 268999999999999999999999997765432 24433
Q ss_pred EEEeecC--eeE-eeeceee------ecCCcEEEEcCCCCCCHHh----HHHHHHHHh
Q psy1366 282 SALRENG--EWH-LEAGALV------LSDGGVCCIDEFSSIKEHD----RTSIHEAME 326 (345)
Q Consensus 282 ~~~~~~~--~~~-~~~G~l~------la~~gi~~IDEidk~~~~~----~~~l~eame 326 (345)
.+...++ .|. -.||.++ ...+.+++|||+||+.... -+||+|+|+
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 2221121 111 1366664 4578999999999987533 389999995
No 40
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.7e-11 Score=109.54 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=93.4
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCC---CCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC-Cc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGED---GSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG-VG 273 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~---~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~-~~ 273 (345)
..|.+.+..-++||+..|+.+..|......+.... ..---+..||||+||+|+|||.||+.+|+++.-++.... +.
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 45677788889999999999999888765543221 112245579999999999999999999999987775543 33
Q ss_pred cCcCCceEEEEeec--CeeEeeeceeeecCCcEEEEcCCCCCC--------------HHhHHHHHHHHhCCEEEEee
Q psy1366 274 TTTAGLTVSALREN--GEWHLEAGALVLSDGGVCCIDEFSSIK--------------EHDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 274 ~~~~glt~~~~~~~--~~~~~~~G~l~la~~gi~~IDEidk~~--------------~~~~~~l~eame~~~i~i~k 334 (345)
-+.+|.-...+-+- .-..---.-+..|..||++||||||+. +..|.+|+..||--..+|.-
T Consensus 133 LTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPP 209 (408)
T COG1219 133 LTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPP 209 (408)
T ss_pred hhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCC
Confidence 34444322111100 000000122456889999999999964 35689999999977666643
No 41
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.06 E-value=1.7e-10 Score=112.62 Aligned_cols=87 Identities=18% Similarity=0.364 Sum_probs=67.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCC------------ccCcCC-ceEEEEeecCeeEeeeceeeecCC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGV------------GTTTAG-LTVSALRENGEWHLEAGALVLSDG 302 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~------------~~~~~g-lt~~~~~~~~~~~~~~G~l~la~~ 302 (345)
+.+||+.|++||||..+||++++.++| ++..... .++..| +|.+. .-..|.+..|+|
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~-------~~r~G~fE~A~G 236 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAI-------TRRIGRFEQANG 236 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcc-------cccCcceeEcCC
Confidence 379999999999999999999999987 2221111 112222 22222 234788999999
Q ss_pred cEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 303 GVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 303 gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
|++|||||..|+.+.|..|+.+++++++.-
T Consensus 237 GTLfLDEI~~mpl~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 237 GTLFLDEIGEMPLELQVKLLRVLQEREFER 266 (464)
T ss_pred ceEEeeccccCCHHHHHHHHHHHHcCeeEe
Confidence 999999999999999999999999998764
No 42
>PHA02244 ATPase-like protein
Probab=99.03 E-value=5.3e-10 Score=106.26 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=65.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceee--ecCCcEEEEcCCCCCCHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALV--LSDGGVCCIDEFSSIKEHD 317 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~--la~~gi~~IDEidk~~~~~ 317 (345)
.+|||.||||||||+|++++++.+..+++..........+... ....+.| +.|.+. .+++|+|+|||++.++++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~-i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGF-IDANGKF--HETPFYEAFKKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccc-ccccccc--cchHHHHHhhcCCEEEEeCcCcCCHHH
Confidence 5999999999999999999999988776544321111111111 1112333 445543 4679999999999999999
Q ss_pred HHHHHHHHhCCEEEEe
Q psy1366 318 RTSIHEAMEQQTISVA 333 (345)
Q Consensus 318 ~~~l~eame~~~i~i~ 333 (345)
+..|+.+++++.+.+.
T Consensus 197 q~~L~~lLd~r~l~l~ 212 (383)
T PHA02244 197 LIIINSAIANKFFDFA 212 (383)
T ss_pred HHHHHHHhccCeEEec
Confidence 9999999998876553
No 43
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.02 E-value=2.7e-10 Score=119.37 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=75.6
Q ss_pred HHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc--C
Q psy1366 200 ILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT--A 277 (345)
Q Consensus 200 l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~--~ 277 (345)
..+-+..++||++.+|+.|+..+....... +.++. .++|+||||+|||++++.+++.+++..+....++.. .
T Consensus 316 ~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 316 AQEILDTDHYGLERVKDRILEYLAVQSRVN-----KIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA 389 (784)
T ss_pred HHHHhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 344677889999999999984444211110 11333 699999999999999999999988876543322211 1
Q ss_pred CceEEEEeecCeeE-eeeceee------ecCCcEEEEcCCCCCCHHh----HHHHHHHHhC
Q psy1366 278 GLTVSALRENGEWH-LEAGALV------LSDGGVCCIDEFSSIKEHD----RTSIHEAMEQ 327 (345)
Q Consensus 278 glt~~~~~~~~~~~-~~~G~l~------la~~gi~~IDEidk~~~~~----~~~l~eame~ 327 (345)
.+... +. .|. -.+|.+. .+.+.|++|||+|+++++. +++|+++|+.
T Consensus 390 ~i~g~--~~--~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 390 EIRGH--RR--TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred Hhccc--hh--ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcc
Confidence 11110 00 010 1244332 1246799999999999876 4899999984
No 44
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=9.9e-10 Score=112.31 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=41.1
Q ss_pred eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeC
Q psy1366 292 LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 292 ~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~ 335 (345)
+++|++..|++|++||||++.|++..|..|+++|+++++.+...
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~ 251 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQ 251 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCc
Confidence 47999999999999999999999999999999999999998654
No 45
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.00 E-value=1.3e-09 Score=111.76 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=80.0
Q ss_pred HhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-----------eEEE
Q psy1366 201 LASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR-----------SVLT 269 (345)
Q Consensus 201 ~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-----------~~~~ 269 (345)
...-+++++|++...+++.-++.... ..|++|+||||||||++++.++..+.+ .+..
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 34456789999877777666554331 138999999999999999999876631 1222
Q ss_pred cCCccCc------CCceEEEE-----------eecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 270 TGVGTTT------AGLTVSAL-----------RENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 270 ~~~~~~~------~glt~~~~-----------~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
.+..... ..+..... ...+......|.+..+++|++||||++.|+...|..|+.+|+++++.+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEe
Confidence 2211100 00110000 000112234566778899999999999999999999999999998765
Q ss_pred e
Q psy1366 333 A 333 (345)
Q Consensus 333 ~ 333 (345)
.
T Consensus 297 ~ 297 (615)
T TIGR02903 297 S 297 (615)
T ss_pred e
Confidence 4
No 46
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=9.8e-11 Score=101.05 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=61.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCcCC--ceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTTAG--LTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~~g--lt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
.++||+||+|+|||.+++.+++.+.- ++..........+ ....+.+ ...-.+|..-.+++||+|||||||+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~---l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSK---LLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHH---HHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhh---hhhcccceeeccchhhhhhHHHhhc
Confidence 58999999999999999999998872 2222211111100 0000000 0001133444556789999999999
Q ss_pred CH-----------HhHHHHHHHHhCCEEEEee
Q psy1366 314 KE-----------HDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 314 ~~-----------~~~~~l~eame~~~i~i~k 334 (345)
.+ ..|+.|+.+||.++++-.+
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~ 112 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY 112 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT
T ss_pred cccccccchhhHHHHHHHHHHHhcccceeccc
Confidence 99 9999999999999998544
No 47
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.99 E-value=8.8e-10 Score=104.88 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=64.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||.|++||||+.+|++++..+++ ++........... ++.. .+. .+.-...+|.+..|++|++||||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~-~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH-EAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc-ccccccCcccccCCchhhCCCCEEEeCC
Confidence 59999999999999999999998875 2222211111111 1110 000 01112347889999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+.+.|..|+.+++++.+.
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~ 123 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFE 123 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEE
Confidence 9999999999999999998754
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.97 E-value=1.2e-09 Score=113.90 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTA 277 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~ 277 (345)
..+.+.+...|+||+.++..+.-++...... ..+ ..+...++||+||||+|||.+++.+++.+..++..........
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~g-l~~--~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAG-LGH--EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhcc-ccC--CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 4567788999999998888777776532100 000 1122237999999999999999999998876544322211100
Q ss_pred CceEEEEee-cCeeE--eeeceee----ecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 278 GLTVSALRE-NGEWH--LEAGALV----LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 278 glt~~~~~~-~~~~~--~~~G~l~----la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
....+.... ...|. .+.|.+. ....+|+++|||||++++.++.|+++|++++++-.
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~ 589 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN 589 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC
Confidence 000000000 00010 1123332 23468999999999999999999999999998753
No 49
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.95 E-value=1.9e-09 Score=110.11 Aligned_cols=42 Identities=29% Similarity=0.493 Sum_probs=39.7
Q ss_pred eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 292 LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 292 ~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
+++|++..|++|++||||++.|++..|..|+++|+++++.+.
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~ 258 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPIT 258 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEec
Confidence 389999999999999999999999999999999999999874
No 50
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.95 E-value=1.4e-09 Score=109.39 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=63.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhh--------CCC---eEEEcCCccCc-----CCceEEEEeecCee-----Eeeeceee
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM--------SPR---SVLTTGVGTTT-----AGLTVSALRENGEW-----HLEAGALV 298 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~--------~~~---~~~~~~~~~~~-----~glt~~~~~~~~~~-----~~~~G~l~ 298 (345)
.+|||.|++||||+.+|++++.. +++ ++.......-. ..|+.. +.|.| .-.+|.+.
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~---~~gaftga~~~~~~Gl~e 319 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY---EEGAFTGSRRGGRAGLFE 319 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCC---ccccccCccccccCCchh
Confidence 59999999999999999999998 544 22222111110 001110 00111 12368889
Q ss_pred ecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 299 LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 299 la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
.|++|++||||++.|+...|..|+.+++++++.
T Consensus 320 ~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 320 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 352 (538)
T ss_pred ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE
Confidence 999999999999999999999999999998875
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.93 E-value=2.5e-09 Score=112.04 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=83.6
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTA 277 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~ 277 (345)
..+.+.+...|+||+.++..+..++...... ..+ ..|...++||+||||+|||.+++.+++.+...+..........
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g-~~~--~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIKRSRAG-LGN--PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHHHHhcC-CCC--CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 4667788999999998888887776632100 000 0122236899999999999999999999876543332211100
Q ss_pred CceEEEEee--cCeeEe-eec----eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 278 GLTVSALRE--NGEWHL-EAG----ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 278 glt~~~~~~--~~~~~~-~~G----~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
..+.+.... .|.... +.| ++.....+|++|||++|++++.++.|+++|+++.++-.
T Consensus 523 ~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~ 585 (731)
T TIGR02639 523 KHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN 585 (731)
T ss_pred cccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC
Confidence 000000000 000000 112 22234568999999999999999999999999988743
No 52
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.93 E-value=6.8e-10 Score=103.56 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=69.8
Q ss_pred HHHhccCcccccchHHHHHHHHHHhC--CCcccCCCCCc-eeeeeceeeeCCCCChHHHHHHHHHhhCCC--------eE
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAG--GVGRGGEDGSK-VRAESHLLLVGDPGTGKSEILKFAKRMSPR--------SV 267 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~--g~~~~~~~~~~-~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~--------~~ 267 (345)
.+.+.+..++.|++.+|+.+.-...- ........|.. .....|+||+||||||||++|+.+++.+.. .+
T Consensus 15 ~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v 94 (284)
T TIGR02880 15 EVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLV 94 (284)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEE
Confidence 45555556679999999886332110 00000001111 112359999999999999999888776532 11
Q ss_pred EEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC---------CHHhHHHHHHHHhCC
Q psy1366 268 LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI---------KEHDRTSIHEAMEQQ 328 (345)
Q Consensus 268 ~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~---------~~~~~~~l~eame~~ 328 (345)
+++. + .+......+.. ....+.+..|.+|++||||++.+ +.+.++.|++.||++
T Consensus 95 ~v~~--~---~l~~~~~g~~~--~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 95 SVTR--D---DLVGQYIGHTA--PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ 157 (284)
T ss_pred EecH--H---HHhHhhcccch--HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC
Confidence 1111 0 01000000000 00123455678999999999977 356678999999876
No 53
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.92 E-value=1.4e-09 Score=104.63 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=79.6
Q ss_pred HHHhccCcccccc-hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-----E-EEcC
Q psy1366 199 HILASICPAIYGL-YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-----V-LTTG 271 (345)
Q Consensus 199 ~l~~s~~p~i~G~-~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-----~-~~~~ 271 (345)
.+.++...+++|. ...++++.-...-. ....|||++|++||||+.+|+.++..+.+. + +.++
T Consensus 71 ~~~~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 71 YLKSEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred hccchhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHH
Confidence 3455666777786 33344333332211 112599999999999999999999887762 1 1122
Q ss_pred CccCc-CC--ceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 272 VGTTT-AG--LTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 272 ~~~~~-~g--lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
..+.. .. |+.- .+. .|...-.+|.+..|+||++|+||+..|++..|..|+.+||++++.
T Consensus 140 ~~~en~~~~eLFG~-~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~ 203 (403)
T COG1221 140 AYSENLQEAELFGH-EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYR 203 (403)
T ss_pred HhCcCHHHHHHhcc-ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceE
Confidence 21111 11 1110 000 122234589999999999999999999999999999999999886
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.92 E-value=6.1e-10 Score=102.69 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=64.4
Q ss_pred ccccchHHHHHHHHHHhCC--CcccCCCCCc-eeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGG--VGRGGEDGSK-VRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g--~~~~~~~~~~-~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
+++|++.+|..+.-....- .......|.. .....|+||+||||||||++++.+++.+... +.. ..+-...+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~----~~~--~~~~~v~~ 80 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM----NVL--SKGHLIEV 80 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc----Ccc--cCCceEEe
Confidence 4688988887764211000 0000001111 1223699999999999999999999865210 000 00000000
Q ss_pred Eee--cCeeEee-----eceeeecCCcEEEEcCCCCCC--------HHhHHHHHHHHhCC
Q psy1366 284 LRE--NGEWHLE-----AGALVLSDGGVCCIDEFSSIK--------EHDRTSIHEAMEQQ 328 (345)
Q Consensus 284 ~~~--~~~~~~~-----~G~l~la~~gi~~IDEidk~~--------~~~~~~l~eame~~ 328 (345)
.+. .+.|.-+ .+.+..|.+||+||||++.+. .+.+..|+..||+.
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc
Confidence 000 0111100 233455778999999999875 45678899999876
No 55
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.89 E-value=3.3e-09 Score=106.65 Aligned_cols=89 Identities=20% Similarity=0.364 Sum_probs=64.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC-----CceEEEEeecCee-----EeeeceeeecCCcEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA-----GLTVSALRENGEW-----HLEAGALVLSDGGVCC 306 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~-----glt~~~~~~~~~~-----~~~~G~l~la~~gi~~ 306 (345)
.+|||.|++||||+.+|++++..+++ ++.......... .|+.. +.|.| .-.+|.+..|++|++|
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~---~~gaftga~~~~~~Gl~e~A~gGTLf 312 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGY---EEGAFTGARRGGRTGLIEAAHRGTLF 312 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCC---cccccccccccccccchhhcCCceEE
Confidence 59999999999999999999998765 232222111110 01110 00111 1247888899999999
Q ss_pred EcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 307 IDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 307 IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
|||++.|+...|..|+.+++++.+.
T Consensus 313 LdeI~~Lp~~~Q~~Ll~~L~~~~~~ 337 (526)
T TIGR02329 313 LDEIGEMPLPLQTRLLRVLEEREVV 337 (526)
T ss_pred ecChHhCCHHHHHHHHHHHhcCcEE
Confidence 9999999999999999999998764
No 56
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.87 E-value=3.9e-09 Score=109.23 Aligned_cols=115 Identities=11% Similarity=0.142 Sum_probs=75.4
Q ss_pred cCcccccch-HHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCc---
Q psy1366 204 ICPAIYGLY-LVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTT--- 276 (345)
Q Consensus 204 ~~p~i~G~~-~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~--- 276 (345)
-++++.|.. .+++.+..+.... +.+.+|||.|++||||+.+|++++..+++ ++.........
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 356778874 4444443332222 12259999999999999999999998874 23222111110
Q ss_pred --CCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 277 --AGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 277 --~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
..|..... +....-.+|.+..|++|++||||++.|+.+.|..|+.+++++.++
T Consensus 392 ~~~elfg~~~--~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~ 446 (638)
T PRK11388 392 LAEEFLGSDR--TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVIT 446 (638)
T ss_pred HHHHhcCCCC--cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEE
Confidence 11211110 011112367888999999999999999999999999999998775
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.86 E-value=4.3e-09 Score=100.24 Aligned_cols=109 Identities=27% Similarity=0.341 Sum_probs=72.1
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
-..+++|++.++..+...+....... ...-|+||+||||+|||++++.+++.+...+.........
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------- 88 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRG-------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------- 88 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-------
Confidence 34567999999888876665321100 1113899999999999999999999886544322110000
Q ss_pred EeecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 284 LRENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 284 ~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
+ .+. + .+.+ .+..++++||||++.++...+..|+.+||+..+.
T Consensus 89 -~-~~~--l-~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 89 -K-PGD--L-AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLD 132 (328)
T ss_pred -C-hHH--H-HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhccee
Confidence 0 000 0 0111 1245789999999999998889999999987654
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.85 E-value=2.6e-09 Score=112.57 Aligned_cols=119 Identities=24% Similarity=0.291 Sum_probs=73.4
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc--Cc
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT--TT 276 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~--~~ 276 (345)
.+.+.+..++||++.+|..+.-.+.....+.. .++ .++||+||||||||++++++++.+.+.++....++ ..
T Consensus 313 ~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-----~~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~ 386 (775)
T TIGR00763 313 RAKEILDEDHYGLKKVKERILEYLAVQKLRGK-----MKG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDE 386 (775)
T ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-----CCC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccH
Confidence 44567888999999999888765442211100 122 38999999999999999999999877665432211 10
Q ss_pred CCceEEEEeecCeeE-eeecee----e--ecCCcEEEEcCCCCCCHHhH----HHHHHHHhC
Q psy1366 277 AGLTVSALRENGEWH-LEAGAL----V--LSDGGVCCIDEFSSIKEHDR----TSIHEAMEQ 327 (345)
Q Consensus 277 ~glt~~~~~~~~~~~-~~~G~l----~--la~~gi~~IDEidk~~~~~~----~~l~eame~ 327 (345)
..+... + ..|. ..+|.+ . ...+.|++|||||++....+ ++|+++|+.
T Consensus 387 ~~i~g~--~--~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~ 444 (775)
T TIGR00763 387 AEIRGH--R--RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDP 444 (775)
T ss_pred HHHcCC--C--CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCH
Confidence 001000 0 0010 002222 1 22457999999999976543 789999974
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.85 E-value=5.7e-09 Score=98.19 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=69.7
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
.+++|++.++..+..++.+.... . ...-|++|+||||+|||+|++.+++.+...+........ .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~--~-----~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~---------~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR--Q-----EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL---------E 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc--C-----CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh---------c
Confidence 46789999988877766532100 0 111389999999999999999999987654433211100 0
Q ss_pred ecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEE
Q psy1366 286 ENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 286 ~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~~i 330 (345)
..+.+ .+.+ .+..+++++|||++.++++.+..|+.+|++..+
T Consensus 68 ~~~~l---~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 68 KPGDL---AAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRL 110 (305)
T ss_pred CchhH---HHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhe
Confidence 00000 0011 123468999999999999999999999987654
No 60
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.84 E-value=6.7e-09 Score=98.82 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=64.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||.|++||||+.+|++++..+++ +++.......... ++.. .+. .+.....+|.+..|++|++||||
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc-cccccCCcccccCCchhccCCCeEEeCC
Confidence 59999999999999999999998874 2322221111101 1110 000 01111236788899999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+...|..|+++++.+.+.
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~~ 130 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGELE 130 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE
Confidence 9999999999999999998754
No 61
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.82 E-value=5e-09 Score=101.11 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=52.1
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCccc-CCCCCc-eeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRG-GEDGSK-VRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~-~~~~~~-~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..+.+.|...|+|++.+|+++..++.++..+. ...+.+ -....|+||+||||+|||++++.+++.+..+++
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi 79 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhe
Confidence 45777788889999999999999998743221 111110 011259999999999999999999999876543
No 62
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.80 E-value=9e-09 Score=104.39 Aligned_cols=91 Identities=25% Similarity=0.400 Sum_probs=63.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC-----CceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA-----GLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~-----glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||.|++||||+.++++++..+++ ++.......... .|+... +. .+.....+|.+..|++|++||||
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEec
Confidence 59999999999999999999998864 222222111110 011000 00 01111246778899999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+...|..|+++++++.+.
T Consensus 299 i~~L~~~~Q~~Ll~~l~~~~~~ 320 (534)
T TIGR01817 299 IGEISPAFQAKLLRVLQEGEFE 320 (534)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE
Confidence 9999999999999999998765
No 63
>KOG0989|consensus
Probab=98.80 E-value=7.1e-09 Score=95.04 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=72.7
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-eEEEcC----CccCcCCce
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR-SVLTTG----VGTTTAGLT 280 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-~~~~~~----~~~~~~glt 280 (345)
.++.|++.+..++.-++.++. -.|+||+||||||||+.++++++.+.- ..+-++ ..|...|..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis 103 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS 103 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcC------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc
Confidence 457899999999999988631 259999999999999999998876643 222222 234444443
Q ss_pred EEEEeec-CeeEe----eece--eeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 281 VSALREN-GEWHL----EAGA--LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 281 ~~~~~~~-~~~~~----~~G~--l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+.++. ..|.- ..+. -+.....|+.|||.|.|..+.|++|...||.
T Consensus 104 --vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 104 --VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred --chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 22221 11100 0000 1122237999999999999999999999997
No 64
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.77 E-value=2.8e-08 Score=105.44 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=81.0
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~ 274 (345)
..+.+.+...|+||+.+...+.-++....... .+ ..|...++||+||||+|||.+++.+++.+. ..+.......
T Consensus 501 ~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl-~~--~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~ 577 (821)
T CHL00095 501 LHMEETLHKRIIGQDEAVVAVSKAIRRARVGL-KN--PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSE 577 (821)
T ss_pred HHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc-cC--CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchh
Confidence 45677889999999999888877765321100 00 112223689999999999999999998763 1221111110
Q ss_pred CcCCceEEEEee-cCee--Eeeece----eeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEee
Q psy1366 275 TTAGLTVSALRE-NGEW--HLEAGA----LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 275 ~~~glt~~~~~~-~~~~--~~~~G~----l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k 334 (345)
.....+.+.... ...| .-+.|. +......|+++||+||++++.++.|+++||+|+++-.+
T Consensus 578 ~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~ 644 (821)
T CHL00095 578 YMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK 644 (821)
T ss_pred ccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC
Confidence 000000000000 0000 001122 22233579999999999999999999999999887654
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.77 E-value=4.8e-09 Score=99.55 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCCccCcCCceE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGVGTTTAGLTV 281 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~~~~~~glt~ 281 (345)
-++.|++.+...+.-.+..+. ..|+||+||||+|||++++++++.+... .+..-..+...|..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~------------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~- 79 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN------------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID- 79 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-
Confidence 356799888877765555441 1389999999999999999999875211 11111111111100
Q ss_pred EEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 282 SALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 282 ~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..++. ..+......+......+++|||+|.|....|++|+..||.
T Consensus 80 -~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~ 125 (319)
T PLN03025 80 -VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI 125 (319)
T ss_pred -HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc
Confidence 00100 0000000001112357999999999999999999999985
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=1.1e-08 Score=100.62 Aligned_cols=110 Identities=21% Similarity=0.258 Sum_probs=69.0
Q ss_pred cccccchHHH---HHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEE
Q psy1366 206 PAIYGLYLVK---LCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 206 p~i~G~~~vk---~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~ 282 (345)
-+++|++.+. ..+.-.+.++. ..|++|+||||||||++++.+++.....+........ +. .
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~------------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~~--~ 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR------------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--GV--K 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC------------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--cH--H
Confidence 3678887663 33444444331 1389999999999999999999877654432211100 00 0
Q ss_pred EEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 283 ALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
..++--+.. ........+.+++|||+++++...|++|+..||++++.+-
T Consensus 76 ~ir~ii~~~--~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI 124 (413)
T PRK13342 76 DLREVIEEA--RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLI 124 (413)
T ss_pred HHHHHHHHH--HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEE
Confidence 001000000 0001122568999999999999999999999999987764
No 67
>KOG0745|consensus
Probab=98.76 E-value=2.6e-09 Score=101.73 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=70.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-ccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCC-
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV-GTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIK- 314 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~-~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~- 314 (345)
..||||+||+|+|||.|++.+|+++.-++.++.. .-+.+|.-...+-. ..-.....+-+..|..||+||||+||+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 3599999999999999999999999988766653 33455542211000 0001111234556889999999999976
Q ss_pred -------------HHhHHHHHHHHhCCEEEEeeCCe
Q psy1366 315 -------------EHDRTSIHEAMEQQTISVAKDKE 337 (345)
Q Consensus 315 -------------~~~~~~l~eame~~~i~i~k~gi 337 (345)
+..|.+|+..+|--.|.|.+.|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~ 341 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCC
Confidence 46789999999998888866654
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.74 E-value=4.3e-08 Score=104.02 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~ 274 (345)
..+.+.+...|+||+.+..++.-++...... ..+.. |..-.+||.||||+|||.+++++++.+-. .+.....+.
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g-l~~~~--~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse 634 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTARAG-LEDPR--KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSE 634 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHHhcC-CCCCC--CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH
Confidence 4567789999999988887777776432100 01111 22226899999999999999999988732 222221111
Q ss_pred CcCCceEEEEeec-Cee--Eeeecee----eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 275 TTAGLTVSALREN-GEW--HLEAGAL----VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 275 ~~~glt~~~~~~~-~~~--~~~~G~l----~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
.....+.+..... ..| .-+.|.| .....+|++||||+|++++.++.|+++|+++.++-.
T Consensus 635 ~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~ 700 (852)
T TIGR03345 635 FQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG 700 (852)
T ss_pred hhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC
Confidence 0000011100000 001 0123333 233578999999999999999999999999987754
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.5e-08 Score=100.64 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-----------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV----------- 272 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~----------- 272 (345)
-..+++||+.++..+..++..+. -..++||+||||||||++|+.+++.+...-...+.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-----------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-----------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 33578999999988888877662 11348999999999999999999876531100000
Q ss_pred --cc--CcCCceEEEEeecCeeE-e--eec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC--CEEE
Q psy1366 273 --GT--TTAGLTVSALRENGEWH-L--EAG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ--QTIS 331 (345)
Q Consensus 273 --~~--~~~glt~~~~~~~~~~~-~--~~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~--~~i~ 331 (345)
+. ....+.++..+.-.+.. + ... .-..++..+++|||++.+....+++|+..||+ +.+.
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 00 00011111000000000 0 000 01235678999999999999999999999998 4443
No 70
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.73 E-value=2.7e-08 Score=103.84 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=62.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||.|++|||||.+|++++..+++ ++..........+ ++.. .+. .+...-..|.+.+|++|++||||
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~le~a~~GtL~Lde 478 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH-ERGAFTGASAQRIGRFELADKSSLFLDE 478 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCc-ccccccccccchhhHHHhcCCCeEEEec
Confidence 59999999999999999999998864 2221111111111 1110 000 01112235677889999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.++.+.|..|+.+|+++.+.
T Consensus 479 i~~L~~~~Q~~L~~~l~~~~~~ 500 (686)
T PRK15429 479 VGDMPLELQPKLLRVLQEQEFE 500 (686)
T ss_pred hhhCCHHHHHHHHHHHHhCCEE
Confidence 9999999999999999988654
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.71 E-value=5.4e-08 Score=103.67 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=79.3
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~ 274 (345)
..+.+.+...|+|++.+..++.-++...... ..+ ..|....+||+||||||||.+++++++.+.. .+.......
T Consensus 557 ~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-l~~--~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 557 LHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-LSD--PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE 633 (852)
T ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcc-CCC--CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3455678888999988877777766532100 000 0122347999999999999999999987632 222111110
Q ss_pred CcCCceEEEEee--cCee-Eeeecee----eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 275 TTAGLTVSALRE--NGEW-HLEAGAL----VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 275 ~~~glt~~~~~~--~~~~-~~~~G~l----~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
.......+.... .|-. ..+.|.+ ......|+++|||++++++.++.|+++|++|.++-.
T Consensus 634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC
Confidence 000000000000 0000 0012222 222356999999999999999999999999988743
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.70 E-value=1.5e-08 Score=83.24 Aligned_cols=105 Identities=24% Similarity=0.209 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccCcCCceEEEEee
Q psy1366 210 GLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTTTAGLTVSALRE 286 (345)
Q Consensus 210 G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~~~glt~~~~~~ 286 (345)
|++.+...+...+.... ..+++++|+||+|||++++.+++.+. ..++.............. .
T Consensus 2 ~~~~~~~~i~~~~~~~~------------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~---~ 66 (151)
T cd00009 2 GQEEAIEALREALELPP------------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA---E 66 (151)
T ss_pred chHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHH---H
Confidence 55566666666665421 14899999999999999999998872 222221111100000000 0
Q ss_pred cCe---eEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCE
Q psy1366 287 NGE---WHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQT 329 (345)
Q Consensus 287 ~~~---~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~ 329 (345)
... +..........+.++++|||++.+.......+++.|++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~ 112 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN 112 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcC
Confidence 000 0011122234567999999999998888888999888754
No 73
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.69 E-value=3.1e-08 Score=99.85 Aligned_cols=91 Identities=20% Similarity=0.348 Sum_probs=63.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eE-EEcCCccCc----CCceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SV-LTTGVGTTT----AGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~-~~~~~~~~~----~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||+|++||||+.++++++..+++ ++ .+....-.. ..|+... +. .+...-.+|.+..|++|++||||
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~lde 289 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLFLDE 289 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEEecC
Confidence 59999999999999999999999875 22 222111110 0111100 00 01111246778899999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+.+.|..|+.+++++.+.
T Consensus 290 I~~L~~~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 290 IGELPLALQAKLLRVLQYGEIQ 311 (509)
T ss_pred hhhCCHHHHHHHHHHHhcCCEe
Confidence 9999999999999999988763
No 74
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.69 E-value=6.9e-08 Score=91.84 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=40.0
Q ss_pred eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCC
Q psy1366 294 AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 294 ~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~g 336 (345)
.|.|..|++|++.++|+.|.+.+.+..||.+++++.+.+.+.+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~ 271 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGF 271 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcc
Confidence 5899999999999999999999999999999999999987553
No 75
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.68 E-value=4.2e-09 Score=94.46 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=72.3
Q ss_pred cCcccccchHHHHHHHHHHhC-CCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEE
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAG-GVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~-g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~ 282 (345)
...+++||+.+|+...+.+-= ..+....+ -..-|||++||||||||+++++++..+.-+++..-.. .|-..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~----WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat----~liGe 190 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGD----WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKAT----ELIGE 190 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcc----cCcceeEEECCCCccHHHHHHHHhcccCCceEEechH----HHHHH
Confidence 456789999998766554321 00111111 1124999999999999999999999887776644211 11000
Q ss_pred EEeec----CeeEeeeceeeecCCcEEEEcCCCCCCHH------------hHHHHHHHHh-----CCEEEEeeCCe
Q psy1366 283 ALREN----GEWHLEAGALVLSDGGVCCIDEFSSIKEH------------DRTSIHEAME-----QQTISVAKDKE 337 (345)
Q Consensus 283 ~~~~~----~~~~~~~G~l~la~~gi~~IDEidk~~~~------------~~~~l~eame-----~~~i~i~k~gi 337 (345)
-+.|+ .+..-.| ..+...|+||||+|.+.-+ ..++|+.-|+ +|.++|+-.+.
T Consensus 191 hVGdgar~Ihely~rA---~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~ 263 (368)
T COG1223 191 HVGDGARRIHELYERA---RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR 263 (368)
T ss_pred HhhhHHHHHHHHHHHH---HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence 00110 0100001 2345789999999986532 3477888775 46777765443
No 76
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.4e-08 Score=99.29 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHhccCcccccchHHHHHHHHHH----hCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC---CeEEEc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVL----AGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP---RSVLTT 270 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l----~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~ 270 (345)
..+-+.+...|+||+.+-.++.-++ .|=..++ |.--..||.||+|+|||.|++++|..+. .+....
T Consensus 483 l~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~ 555 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI 555 (786)
T ss_pred HHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee
Confidence 3556788999999987766555554 3321111 2223899999999999999999999876 233222
Q ss_pred CCccCcCCceEEEEeec--C-eeEeeeceeeec----CCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCC
Q psy1366 271 GVGTTTAGLTVSALREN--G-EWHLEAGALVLS----DGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 271 ~~~~~~~glt~~~~~~~--~-~~~~~~G~l~la----~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~g 336 (345)
.++-.....+++-+... | --+-+.|.|.-| ...|+++|||+|..++..+.|+++|++|+++=.++-
T Consensus 556 DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 556 DMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred chHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCC
Confidence 22111100111100000 0 001223443222 257999999999999999999999999998876654
No 77
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.66 E-value=2.8e-08 Score=100.31 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=61.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCCccCc----CCceEEEEee-cCeeEeeeceeeecCCcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGVGTTT----AGLTVSALRE-NGEWHLEAGALVLSDGGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~~~~~----~glt~~~~~~-~~~~~~~~G~l~la~~gi~~IDEi 310 (345)
.+|||.|++||||+.+|++++..+++. +.+....... ..|+...... .+...-.+|.+..|++|++||||+
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI 307 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEI 307 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeCh
Confidence 499999999999999999999887652 2222111110 0011100000 000012367788899999999999
Q ss_pred CCCCHHhHHHHHHHHhCCEE
Q psy1366 311 SSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 311 dk~~~~~~~~l~eame~~~i 330 (345)
+.|+...|..|+.+++++++
T Consensus 308 ~~L~~~~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 308 GEMSPRMQAKLLRFLNDGTF 327 (520)
T ss_pred hhCCHHHHHHHHHHHhcCCc
Confidence 99999999999999998754
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.63 E-value=7.9e-08 Score=102.21 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=85.6
Q ss_pred cCHHHHHHHHHHHHhhc-----cChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCC
Q psy1366 174 ITPELRAEVTQFWEDHK-----YDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDP 248 (345)
Q Consensus 174 ~~~e~~~~~~~~~~~~~-----~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~p 248 (345)
++++++..+-.-|.... .+.......+.+.+...|+|++.+...+..++...... ..+ ..|...++||+|||
T Consensus 531 v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g-l~~--~~~p~~~~Lf~Gp~ 607 (857)
T PRK10865 531 VTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG-LSD--PNRPIGSFLFLGPT 607 (857)
T ss_pred cCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc-ccC--CCCCCceEEEECCC
Confidence 55555555544443221 12222234567789999999987666665554421000 000 00111379999999
Q ss_pred CChHHHHHHHHHhhCCC---eEEEcCCccC-----cCCceEE----EEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 249 GTGKSEILKFAKRMSPR---SVLTTGVGTT-----TAGLTVS----ALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 249 GtGKs~l~~~i~~~~~~---~~~~~~~~~~-----~~glt~~----~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
|||||.+++++++.+.. ++........ ...|..+ +-.+.+.+ -.+++.....+|++|||+++++++
T Consensus 608 G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~--l~~~v~~~p~~vLllDEieka~~~ 685 (857)
T PRK10865 608 GVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY--LTEAVRRRPYSVILLDEVEKAHPD 685 (857)
T ss_pred CCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHH--HHHHHHhCCCCeEEEeehhhCCHH
Confidence 99999999999987742 1211111000 0000000 00000000 011222234689999999999999
Q ss_pred hHHHHHHHHhCCEEE
Q psy1366 317 DRTSIHEAMEQQTIS 331 (345)
Q Consensus 317 ~~~~l~eame~~~i~ 331 (345)
.++.|+++|+++.++
T Consensus 686 v~~~Ll~ile~g~l~ 700 (857)
T PRK10865 686 VFNILLQVLDDGRLT 700 (857)
T ss_pred HHHHHHHHHhhCcee
Confidence 999999999998765
No 79
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.61 E-value=7e-08 Score=90.24 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---E---EEcCCccCc--CCceEEE
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---V---LTTGVGTTT--AGLTVSA 283 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~---~~~~~~~~~--~glt~~~ 283 (345)
..+..|-.+|.... ++|+.|++||||..++|+++..+||. + ...+..... ..++...
T Consensus 215 ~~v~qA~k~AmlDA---------------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~a 279 (511)
T COG3283 215 HVVEQAQKLAMLDA---------------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHA 279 (511)
T ss_pred HHHHHHHHhhccCC---------------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCC
Confidence 44555666666655 99999999999999999999999983 1 111221111 1122211
Q ss_pred EeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 284 LRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 284 ~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
-.+ .-..|.+.+|++|.+++|||..|++..|..|+..+.+|+..
T Consensus 280 pg~----~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFR 323 (511)
T COG3283 280 PGD----EGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFR 323 (511)
T ss_pred CCC----CCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCcee
Confidence 111 12378899999999999999999999999999999998764
No 80
>KOG2028|consensus
Probab=98.60 E-value=1.2e-08 Score=95.57 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred cccccchHH--HHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-EEEcCCccCcCCceEE
Q psy1366 206 PAIYGLYLV--KLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-VLTTGVGTTTAGLTVS 282 (345)
Q Consensus 206 p~i~G~~~v--k~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-~~~~~~~~~~~glt~~ 282 (345)
.+.+||+.+ ..+++..++--... ..+.|+||||||||+|++.++.-+... .+......+.++ +.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~i-----------pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~--t~ 204 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRI-----------PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK--TN 204 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCC-----------CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc--hH
Confidence 356777544 35566665532110 379999999999999999999887653 111111111111 00
Q ss_pred EEeec-----CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCC
Q psy1366 283 ALREN-----GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 283 ~~~~~-----~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~g 336 (345)
.+|+. ++.. .-...-|+||||+.+++..+|+.++-..|.|.|++--|.
T Consensus 205 dvR~ife~aq~~~~------l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGAT 257 (554)
T KOG2028|consen 205 DVRDIFEQAQNEKS------LTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGAT 257 (554)
T ss_pred HHHHHHHHHHHHHh------hhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecc
Confidence 11210 1111 112357999999999999999999999999999986553
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1e-07 Score=92.00 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=67.6
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC--------c
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT--------T 276 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~--------~ 276 (345)
+-+|+||+.+++.+.-++..|. -.+.+||+||||+|||++++.+++.+.-.....+.+.. .
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-----------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-----------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3478999999999888887661 11246999999999999999999876421000000000 0
Q ss_pred CC-------ceEEE-Ee-ec-----CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 277 AG-------LTVSA-LR-EN-----GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 277 ~g-------lt~~~-~~-~~-----~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.| +.++. .+ +. ......| ..++..|++|||+++|+...+++|+..||+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p---~~~~~kviIIDEa~~l~~~a~naLLk~lEe 145 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSP---SKSRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCc---ccCCceEEEEEChhhcCHHHHHHHHHHHhc
Confidence 00 00000 00 00 0000000 123456999999999999999999999997
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.55 E-value=3.9e-08 Score=102.22 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=67.4
Q ss_pred CcccccchHHHH---HHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceE
Q psy1366 205 CPAIYGLYLVKL---CLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTV 281 (345)
Q Consensus 205 ~p~i~G~~~vk~---~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~ 281 (345)
..+++|++.+.. .+.-++..+ ...|++|+||||||||++++.+++.....+..... ...++
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~------------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna--~~~~i-- 90 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD------------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA--VLAGV-- 90 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh--hhhhh--
Confidence 346789977652 233333322 11499999999999999999999876543321110 00111
Q ss_pred EEEeecCeeEeee-ceee-ecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 282 SALRENGEWHLEA-GALV-LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 282 ~~~~~~~~~~~~~-G~l~-la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
++-.+..-.+ ..+. ...+++++|||++.++...|++|+..||++.+.+.
T Consensus 91 ---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI 141 (725)
T PRK13341 91 ---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLI 141 (725)
T ss_pred ---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEE
Confidence 1100000000 0011 12457999999999999999999999999987663
No 83
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.55 E-value=9.5e-08 Score=94.64 Aligned_cols=91 Identities=19% Similarity=0.332 Sum_probs=64.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC-----CceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA-----GLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~-----glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++++.|++||||+.++++++..+++ +++......... .|+.. .+. .+.....+|.+..|++|++||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY-EKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC-CCCCcCCCccCCCCceeECCCCEEEEec
Confidence 59999999999999999999998864 222211111100 01100 000 01122347889999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+...|..|+++++++.+.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~ 263 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVIE 263 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeEE
Confidence 9999999999999999998764
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.2e-07 Score=93.56 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=69.3
Q ss_pred ccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE----EcCC------
Q psy1366 203 SICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL----TTGV------ 272 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~----~~~~------ 272 (345)
.-+.++.||+.+...+..++..+. -.+.+||+||||||||++|+.+++.+.-.-. .++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-----------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-----------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 344578999999998888887662 1123899999999999999999998753210 0110
Q ss_pred -----ccCcCCceEEEEeecCee-Eeeecee---eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 -----GTTTAGLTVSALRENGEW-HLEAGAL---VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 -----~~~~~glt~~~~~~~~~~-~~~~G~l---~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
......+.++..+...+. .+..... ......|++|||++.|+.+.+++|+..||+
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE 147 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE 147 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc
Confidence 000000111100000000 0000000 112345999999999999999999999998
No 85
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.51 E-value=1.5e-07 Score=93.83 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=64.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCccCcC-----CceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGTTTA-----GLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~~~~-----glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++|+.|++||||+.++++++..+++. +.......... .++... +. .+.....+|.+..|++|++||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~-~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHE-KGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCC-CCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 699999999999999999999988752 22111111000 000000 00 01122357888999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~i 332 (345)
++.|+.+.|..|+.+++++.+.-
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~~ 263 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFYR 263 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEEe
Confidence 99999999999999999987653
No 86
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.9e-07 Score=97.58 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=68.9
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeec-eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC--------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH-LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT-------- 275 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~-iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~-------- 275 (345)
+-+|+||+.++..+.-++..|.- .| +||+||||+|||++++.+++.+.-.-...+....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC------------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 34788999999998888776611 35 4899999999999999999887532111111000
Q ss_pred cCCc-------eEEE-E-----eec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 TAGL-------TVSA-L-----REN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 ~~gl-------t~~~-~-----~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..|. .++. . |+- ......+ ..+...|++|||+++|+.+.+++|+..||+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P---~~gk~KViIIDEAh~LT~eAqNALLKtLEE 145 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---SRGRFKVYLIDEVHMLSRSSFNALLKTLEE 145 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhh---hcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0010 0100 0 000 0000001 123457999999999999999999999997
No 87
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.49 E-value=1.3e-08 Score=82.94 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=50.4
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc---CCceEEEEeecCeeEeeeceeeec-CCcEEEEcCCCCCCHHh
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT---AGLTVSALRENGEWHLEAGALVLS-DGGVCCIDEFSSIKEHD 317 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~---~glt~~~~~~~~~~~~~~G~l~la-~~gi~~IDEidk~~~~~ 317 (345)
|||+||||+|||++++.+++.+...++........ .+-+.... ..+.-++ ... ...|++|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i---~~~~~~~---~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI---RDFFKKA---KKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH---HHHHHHH---HHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc---ccccccc---cccccceeeeeccchhccccc
Confidence 69999999999999999999997665433221111 11000000 0000000 111 25899999999998887
Q ss_pred -----------HHHHHHHHhC
Q psy1366 318 -----------RTSIHEAMEQ 327 (345)
Q Consensus 318 -----------~~~l~eame~ 327 (345)
...|+..|+.
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccceeeecccc
Confidence 6788888865
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.3e-07 Score=93.23 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=69.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc-----------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG----------- 273 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~----------- 273 (345)
+.+|+||+.+++.+.-++..+. -.+.+||+||||+|||++++.+++.+.-.-...+..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 3468999999999999987662 112379999999999999999998774211000000
Q ss_pred ----cCcCCceEEEEeecCee--Eeee--ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 ----TTTAGLTVSALRENGEW--HLEA--GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 ----~~~~glt~~~~~~~~~~--~~~~--G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.....+.++....-.++ .++. -.-..+...|++|||+|+|+.+.+++|+..||+
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 00001111100000000 0000 001123457999999999999999999999997
No 89
>KOG0991|consensus
Probab=98.49 E-value=4.4e-08 Score=86.70 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=69.0
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC----CccCcCCc
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG----VGTTTAGL 279 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~----~~~~~~gl 279 (345)
...+|+|+++.-..+.+..-.|. -.|+++.||||+|||+-+..+|+.+-..-|-.+ +.|...|+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn------------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN------------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC------------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 44578999776665555444441 149999999999999988888875532222222 23333343
Q ss_pred eEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHh
Q psy1366 280 TVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 280 t~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame 326 (345)
.+. |.. ..|.-..-.+......|+.+||.|.|....|.+|...||
T Consensus 93 DvV--Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 93 DVV--RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred HHH--HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 221 110 222222222333446799999999999999999999998
No 90
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.49 E-value=1.8e-07 Score=92.95 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=64.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC-----ceEEEEe-ecCeeEeeeceeeecCCcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG-----LTVSALR-ENGEWHLEAGALVLSDGGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g-----lt~~~~~-~~~~~~~~~G~l~la~~gi~~IDEi 310 (345)
.++|+.|++||||+.++++++..+++ +++.......... |+..... -.+.....+|.+..|++|++||||+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 59999999999999999999987764 2222221111111 1000000 0122233478899999999999999
Q ss_pred CCCCHHhHHHHHHHHhCCEEE
Q psy1366 311 SSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 311 dk~~~~~~~~l~eame~~~i~ 331 (345)
+.++...|..|+++++.+.+.
T Consensus 247 ~~l~~~~q~~L~~~l~~~~~~ 267 (457)
T PRK11361 247 GEMPLVLQAKLLRILQEREFE 267 (457)
T ss_pred hhCCHHHHHHHHHHHhcCcEE
Confidence 999999999999999988754
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3e-07 Score=93.43 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=69.5
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc-----------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG----------- 273 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~----------- 273 (345)
+.+|+|++.+++.+.-++..| |-...+||+||||+|||++++.+++.+.-.--..+..
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 347899999999999988876 2224669999999999999999998764211000000
Q ss_pred ----cCcCCceEEEEeecCee--Eeeec--eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 ----TTTAGLTVSALRENGEW--HLEAG--ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 ----~~~~glt~~~~~~~~~~--~~~~G--~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.....+.++..+.-.+. .+... .-..+...|++|||++.|+...+++|+..||+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE 144 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE 144 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 00000111100000000 00000 00123457999999999999999999999998
No 92
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.9e-08 Score=92.01 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=48.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE-cCCccCcCCceEEEEeecCeeEeeeceeeec---CCcEEEEcCCCCC---
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT-TGVGTTTAGLTVSALRENGEWHLEAGALVLS---DGGVCCIDEFSSI--- 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~-~~~~~~~~glt~~~~~~~~~~~~~~G~l~la---~~gi~~IDEidk~--- 313 (345)
-|||+||||||||.|||++|+...-.+.- .|. .|--..+.++.. +.-..+.+| ...|+||||||.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS-----ElVqKYiGEGaR--lVRelF~lArekaPsIIFiDEIDAIg~k 259 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS-----ELVQKYIGEGAR--LVRELFELAREKAPSIIFIDEIDAIGAK 259 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccH-----HHHHHHhccchH--HHHHHHHHHhhcCCeEEEEechhhhhcc
Confidence 79999999999999999999887654322 221 110000001000 000111222 2589999999964
Q ss_pred --------CHHhHHHHHHHHhC
Q psy1366 314 --------KEHDRTSIHEAMEQ 327 (345)
Q Consensus 314 --------~~~~~~~l~eame~ 327 (345)
+.+.|-.|+|.+.|
T Consensus 260 R~d~~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 260 RFDSGTSGDREVQRTMLELLNQ 281 (406)
T ss_pred cccCCCCchHHHHHHHHHHHHh
Confidence 34678889998865
No 93
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.45 E-value=9e-08 Score=95.53 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=64.5
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCCC---eEEE-cC-Cc---------cCcCCceEEEEeecCeeEeeeceeeecCC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSPR---SVLT-TG-VG---------TTTAGLTVSALRENGEWHLEAGALVLSDG 302 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~-~~-~~---------~~~~glt~~~~~~~~~~~~~~G~l~la~~ 302 (345)
+.++++|+.|+|||||..++|++++.+.. .+.+ ++ .+ +...|-+..+.+. -..|.+.+|++
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~k-----G~~g~~~~A~g 408 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRK-----GYKGKLEQADG 408 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhc-----cccccceecCC
Confidence 44579999999999999999999987753 1111 11 00 1111111111111 12677889999
Q ss_pred cEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 303 GVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 303 gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
|.+|+|||..|+.+.|.+|+.+++++.|+
T Consensus 409 GtlFldeIgd~p~~~Qs~LLrVl~e~~v~ 437 (606)
T COG3284 409 GTLFLDEIGDMPLALQSRLLRVLQEGVVT 437 (606)
T ss_pred CccHHHHhhhchHHHHHHHHHHHhhCcee
Confidence 99999999999999999999999999986
No 94
>KOG0739|consensus
Probab=98.45 E-value=7.9e-08 Score=87.88 Aligned_cols=95 Identities=24% Similarity=0.312 Sum_probs=57.0
Q ss_pred ccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
++-|.|-+|.|+--+.+-.+.- ....|.+ +...-|||+||||||||.|++++|..+.-.++.. ..|. |.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv-SSSD---Lv----- 203 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV-SSSD---LV----- 203 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe-ehHH---HH-----
Confidence 5778888888876665433221 1122222 3335799999999999999999999887433322 1111 11
Q ss_pred ecCeeEeeecee-----eec---CCcEEEEcCCCCC
Q psy1366 286 ENGEWHLEAGAL-----VLS---DGGVCCIDEFSSI 313 (345)
Q Consensus 286 ~~~~~~~~~G~l-----~la---~~gi~~IDEidk~ 313 (345)
..|.-+.-.| .+| ...|+||||||.+
T Consensus 204 --SKWmGESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 204 --SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred --HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 1222222222 222 3589999999975
No 95
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.45 E-value=1.7e-07 Score=77.80 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=52.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE--EEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV--LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHD 317 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~--~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~ 317 (345)
.+|||+|+|||||+.+|++++....+.. +..-.. ..+ ....+..+.+|+++|+|+|.++++.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~---~~~-------------~~~~l~~a~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC---ASL-------------PAELLEQAKGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH---HCT-------------CHHHHHHCTTSEEEEECGCCS-HHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech---hhC-------------cHHHHHHcCCCEEEECChHHCCHHH
Confidence 5999999999999999999999877521 111000 000 0223334689999999999999999
Q ss_pred HHHHHHHHhCC
Q psy1366 318 RTSIHEAMEQQ 328 (345)
Q Consensus 318 ~~~l~eame~~ 328 (345)
|..|.++++..
T Consensus 86 Q~~L~~~l~~~ 96 (138)
T PF14532_consen 86 QRRLLDLLKRQ 96 (138)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999999853
No 96
>KOG1051|consensus
Probab=98.44 E-value=4.3e-07 Score=94.90 Aligned_cols=129 Identities=14% Similarity=0.196 Sum_probs=87.1
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCce-eeeeceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKV-RAESHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVG 273 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~-r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~ 273 (345)
..|.+.|-..|.||+++-.||..++..... |... .++.-+||.||.|+|||.|++++|..+-.+ +...+..
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDms 628 (898)
T KOG1051|consen 554 KKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMS 628 (898)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechh
Confidence 456778888999999999999888876521 1111 367899999999999999999999987431 1111111
Q ss_pred c-----CcCCceEEEE-ee-cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEee
Q psy1366 274 T-----TTAGLTVSAL-RE-NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 274 ~-----~~~glt~~~~-~~-~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k 334 (345)
. -..|...... .+ +|. -.+++-.-...|+++|||||++++.++.|+++|+.|+++=.+
T Consensus 629 e~~evskligsp~gyvG~e~gg~---LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 629 EFQEVSKLIGSPPGYVGKEEGGQ---LTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred hhhhhhhccCCCcccccchhHHH---HHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCC
Confidence 1 0001000000 00 111 133445555789999999999999999999999998887444
No 97
>PRK15115 response regulator GlrR; Provisional
Probab=98.41 E-value=3.9e-07 Score=90.28 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=64.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC-----CceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA-----GLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~-----glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++++.|++|+||+.+++++++.+++ ++.......... .|+... +. .+......|.+..|++|++||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHA-RGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCC-cCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 58999999999999999999998874 222111110000 011000 00 12223457888999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+...|..|+.+|+++.+.
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~~ 258 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKVR 258 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCEE
Confidence 9999999999999999998764
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.4e-07 Score=90.61 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=68.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-EEEcC----CccCcCC--
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-VLTTG----VGTTTAG-- 278 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-~~~~~----~~~~~~g-- 278 (345)
-+|+||+.+++.+.-++..| |-.+.+||.||||+|||++++.+++.+.-. .+... ......|
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 37899999999888888766 222359999999999999999999876321 00000 0000000
Q ss_pred -----------ceEEEEeecCe-e----E---eeec--eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 279 -----------LTVSALRENGE-W----H---LEAG--ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 279 -----------lt~~~~~~~~~-~----~---~~~G--~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+..... ++.. . . .+.- .-..++..+++|||+++|+.+.+++|+..||+
T Consensus 85 ~~c~~~~~~~~~n~~~~-~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 85 ESCRDFDAGTSLNISEF-DAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred HHHHHHhcCCCCCeEee-cccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 000000 0000 0 0 0000 01235678999999999999999999999997
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.1e-07 Score=90.43 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=69.1
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC----eEEEcC---------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR----SVLTTG--------- 271 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~--------- 271 (345)
+.+++||+.+++.+.-++..| |-..++||.||||+|||++++.+++.+.- ...-+|
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 357899999999888777766 22247999999999999999999985421 000000
Q ss_pred --CccCcCCceEEEEeecCee--Eee-ec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 272 --VGTTTAGLTVSALRENGEW--HLE-AG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 272 --~~~~~~glt~~~~~~~~~~--~~~-~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.......+.++..+.-++. .++ .. .-..+...|++|||++.|+.+.+++|+..||+
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 0000001111100000000 000 00 00235678999999999999999999999997
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=4.7e-07 Score=93.03 Aligned_cols=111 Identities=22% Similarity=0.218 Sum_probs=68.1
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC----------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT---------- 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~---------- 275 (345)
.+|+||+.+++.|.-++..|. -.+-+||+|++|+|||++++.+++.+.-.....+....
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 468999999999998887661 11235999999999999999999877421110110000
Q ss_pred --cCC---ceEEEEeecCee--Eeee--ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 --TAG---LTVSALRENGEW--HLEA--GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 --~~g---lt~~~~~~~~~~--~~~~--G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
... +.++..+.-++. .++. -........|++|||+|+|+...+++|+..||+
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE 145 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE 145 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh
Confidence 000 000000000000 0000 000123467999999999999999999999998
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.2e-07 Score=91.57 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=68.9
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc----------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT---------- 274 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~---------- 274 (345)
+.+|+||+.++..+.-++..| |..+.+||+||||+|||++++.+++.+.-.-...+...
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 346889999999888888765 22234889999999999999999986642100000000
Q ss_pred --CcCC---ceEEEEeecCe--eEee-ec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 275 --TTAG---LTVSALRENGE--WHLE-AG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 275 --~~~g---lt~~~~~~~~~--~~~~-~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.... +.++....-.+ ..++ .- .-..++..|++|||+++|+...+++|+..||+
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe 145 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE 145 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc
Confidence 0001 11100000000 0000 00 01234567999999999999999999999998
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=6.2e-07 Score=85.30 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=66.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC------eEEEcCCccCcCC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR------SVLTTGVGTTTAG 278 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~------~~~~~~~~~~~~g 278 (345)
..++.|++.++..+.-++..+.. .|+||+||||||||++++++++.+.. .++.+........
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~------------~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNL------------PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCC------------ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 34567999988888777665411 38999999999999999999886632 1222211000000
Q ss_pred ceEEEEeecCeeE--ee--------------------ecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 279 LTVSALRENGEWH--LE--------------------AGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 279 lt~~~~~~~~~~~--~~--------------------~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.........|. +. ++.. ..++..+++|||++.++++.+..|++.||+
T Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 82 --KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred --hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 00000000000 00 0101 124568999999999999999999999985
No 103
>KOG0737|consensus
Probab=98.38 E-value=1.2e-07 Score=89.15 Aligned_cols=110 Identities=30% Similarity=0.355 Sum_probs=67.6
Q ss_pred CcccccchHHHHHHHHHHhCCC--cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGV--GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~--~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~ 282 (345)
+-+|.|.+.+|.++.....-.. +.....|...+..-.|||+||||||||.+|+++++.+.-.+...+.+ .+|
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s----~lt-- 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS----NLT-- 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc----ccc--
Confidence 3478888888776644433211 11222455567778999999999999999999999887544322221 111
Q ss_pred EEeecCeeEeeeceeee-----c---CCcEEEEcCCCCCCHHhHHHHHHHH
Q psy1366 283 ALRENGEWHLEAGALVL-----S---DGGVCCIDEFSSIKEHDRTSIHEAM 325 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~l-----a---~~gi~~IDEidk~~~~~~~~l~eam 325 (345)
..|.-++-.++. | ...|+||||+|.+--.-+..=||||
T Consensus 165 -----~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~ 210 (386)
T KOG0737|consen 165 -----SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEAT 210 (386)
T ss_pred -----hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHH
Confidence 133333333322 2 2689999999986543345556665
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=5.9e-07 Score=90.89 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=71.9
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-e---EEEcCCcc-----
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR-S---VLTTGVGT----- 274 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-~---~~~~~~~~----- 274 (345)
-+.+++||+.++..+.-++..| |..+.+||.||||+|||++|+.+++.+.- . ...+|.-.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4457889999999888888765 22235999999999999999999987631 0 00011000
Q ss_pred ---CcCC---ceEEE------Eeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC---CEEEE
Q psy1366 275 ---TTAG---LTVSA------LREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ---QTISV 332 (345)
Q Consensus 275 ---~~~g---lt~~~------~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~---~~i~i 332 (345)
.... +.++. .|+- ..+...| ..++.+|++|||++.|+...+++|+..||+ ..+-|
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P---~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLP---TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhch---hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0000 11100 0000 0000001 235678999999999999999999999995 45554
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=4.5e-07 Score=88.24 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=72.5
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE---EEcCC--------c
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV---LTTGV--------G 273 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~---~~~~~--------~ 273 (345)
+.+|+||+.++..+.-++..+.......+ .+-.+.+||.||||+|||++++.+++.+.-.- ..+|. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 45789999999998888876632111111 11224599999999999999999987642110 00000 0
Q ss_pred cCcCCceEE------E----Eeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC---CEEEE
Q psy1366 274 TTTAGLTVS------A----LREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ---QTISV 332 (345)
Q Consensus 274 ~~~~glt~~------~----~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~---~~i~i 332 (345)
.+...+... . +|+- ......| ..++..|++|||+|+|++..+++|+..||+ .++.|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p---~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRP---STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCc---ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 000011000 0 0100 0000011 224567999999999999999999999998 55544
No 106
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1e-06 Score=88.24 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=70.7
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc-cCcCCceE-
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG-TTTAGLTV- 281 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~-~~~~glt~- 281 (345)
-+-+++||+.+...+.-++..+ |-..++||.||||+|||++++.+++.+.-.....+.. ....|...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 3456899999999888877766 2225899999999999999999998775321111100 00000000
Q ss_pred -EEEeec--Cee-Eeeec-----------------eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 282 -SALREN--GEW-HLEAG-----------------ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 282 -~~~~~~--~~~-~~~~G-----------------~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
....++ .++ .+.+. .-..++..|++|||++.++...+++|+..||+
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 000000 000 00000 01235678999999999999999999999997
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6e-07 Score=91.26 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=69.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc--------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT-------- 276 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~-------- 276 (345)
+-+|+||+.++..|.-++..+ |-..++||.||||+|||++++.+++.+.-.-...+.....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 346789999999888888765 2225889999999999999999998774211000100000
Q ss_pred CC--ceEEEEeecCeeEee--------ec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 277 AG--LTVSALRENGEWHLE--------AG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 277 ~g--lt~~~~~~~~~~~~~--------~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.| .............++ .. .-..+...|++|||+++|+.+.+++|+..||+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE 145 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE 145 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc
Confidence 00 000000000000000 00 00224567999999999999999999999996
No 108
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.35 E-value=7.5e-07 Score=88.68 Aligned_cols=92 Identities=21% Similarity=0.336 Sum_probs=64.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++++.|++||||+.++++++...++. ++.......... ++.. .+. .+......|.+..|++|++||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH-EKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC-CCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 699999999999999999999988752 222211111000 1000 000 01112246778899999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~i 332 (345)
++.++.+.|..|+++++++.+.-
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~ 259 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYR 259 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEE
Confidence 99999999999999999988754
No 109
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=5.5e-07 Score=91.37 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=68.5
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE--EEcCCccCcC-----
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV--LTTGVGTTTA----- 277 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~--~~~~~~~~~~----- 277 (345)
+.+|+||+.+++.|.-++..|. -.+-+||.|++|+|||++++.+++.+.-.- -..+..+...
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 3578999999999998888762 112359999999999999999998774210 0000000000
Q ss_pred -------------CceEEEEeecC------ee-EeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 -------------GLTVSALRENG------EW-HLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 -------------glt~~~~~~~~------~~-~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+.++..+.-+ ++ .+.+ ......|++|||+|+|+...+++|+..||+
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P---~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP---TAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch---hcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 01111000000 00 0000 123357999999999999999999999998
No 110
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.34 E-value=1.8e-06 Score=82.87 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=68.9
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE----EcCC-------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL----TTGV------- 272 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~----~~~~------- 272 (345)
...++.|++.++..+.-++..|. -...+||+||||+|||++++.+++.+.-... .+|.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-----------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-----------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 44578999999998888887662 1135899999999999999999987642200 0000
Q ss_pred -ccCcCCc---eEEEEee--c-CeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 -GTTTAGL---TVSALRE--N-GEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 -~~~~~gl---t~~~~~~--~-~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
......+ .+..... . .+..-..... ..++..+++|||+|.++...+++|+..||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0000000 0000000 0 0000000111 235567999999999999999999999986
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.3e-07 Score=91.34 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=69.0
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE-EEcCCccC--------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV-LTTGVGTT-------- 275 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~~~-------- 275 (345)
+.+|+||+.++..+.-++..|. -...+||+||||+|||++++.+++.+.-.. ...+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 3478999999999988887661 113579999999999999999998764100 00000000
Q ss_pred cCCceEEEE-eec-C--------ee--EeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 TAGLTVSAL-REN-G--------EW--HLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 ~~glt~~~~-~~~-~--------~~--~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..|...-+. -+. . +. .+... -..++..|++|||+++|+.+.+++|+..||+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe 146 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFR-PALARYKVYIIDEVHMLSTAAFNALLKTLEE 146 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCHHHHHHHHHHHhc
Confidence 000000000 000 0 00 00000 1236678999999999999999999999997
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=9.8e-07 Score=89.15 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc---------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT--------- 276 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~--------- 276 (345)
.+|+||+.+++.+.-++..+. -.+.+||+||||+|||++++.+++.+.-.....+.+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 468899999999988887652 112368999999999999999998764211001100000
Q ss_pred ---CC---ceEEEE------eec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 277 ---AG---LTVSAL------REN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 277 ---~g---lt~~~~------~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.. +.++.. |+- ......| ..++..|++|||+|+|+...+++|+..||+
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p---~~~~~kVvIIDEad~ls~~a~naLLK~LEe 145 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAP---TRGRFKVYIIDEVHMLSKSAFNAMLKTLEE 145 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCc---ccCCceEEEEcCcccCCHHHHHHHHHHHhC
Confidence 00 000000 000 0000001 124567999999999999999999999998
No 113
>KOG0733|consensus
Probab=98.32 E-value=1.3e-07 Score=93.72 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=54.4
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
+..--+||.||||||||.||+++|..+.-+++.........|......+.-.+..-+| ......|+||||||-+.+.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A---~~~aPcivFiDeIDAI~pk 297 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA---KSNAPCIVFIDEIDAITPK 297 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH---hccCCeEEEeecccccccc
Confidence 3445799999999999999999999998877655444444444332211111111111 1223689999999998775
Q ss_pred hHHHHHHHHhC
Q psy1366 317 DRTSIHEAMEQ 327 (345)
Q Consensus 317 ~~~~l~eame~ 327 (345)
-. .-.+-||+
T Consensus 298 Re-~aqreMEr 307 (802)
T KOG0733|consen 298 RE-EAQREMER 307 (802)
T ss_pred hh-hHHHHHHH
Confidence 33 33444444
No 114
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=7.1e-07 Score=91.39 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=69.4
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeec-eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC-------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH-LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT------- 275 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~-iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~------- 275 (345)
-+.+|+||+.++..+.-++..|. - .| +||+|++|+|||++++.+++.+.-.....+....
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-----------l-~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-----------L-HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----------C-CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 34578999999999998888762 1 35 5899999999999999999877532100000000
Q ss_pred -----cCC---ceEEE------Eeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 -----TAG---LTVSA------LREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 -----~~g---lt~~~------~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
... +.++. .|+- ......+ ......|++|||+++|+...+++|+..||+
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p---~~g~~KV~IIDEah~Ls~~a~NALLKtLEE 145 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP---ARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhh---hcCCCEEEEEechHhCCHHHHHHHHHHHHc
Confidence 000 11110 0000 0000001 123456999999999999999999999998
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=1.9e-07 Score=90.96 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=25.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++||+||||||||.+++++++.+...++
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 47999999999999999999998876544
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.8e-06 Score=91.13 Aligned_cols=109 Identities=22% Similarity=0.240 Sum_probs=68.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeec-eeeeCCCCChHHHHHHHHHhhCCCe----EEEcCC--------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH-LLLVGDPGTGKSEILKFAKRMSPRS----VLTTGV-------- 272 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~-iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~-------- 272 (345)
.+|+||+.+++.|.-++..+ |- .| +||.|++|+|||++++.+++.+.=. ..-+|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----------ri-~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----------RI-NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----------CC-CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 46789999999988888766 22 25 7999999999999999999877410 000000
Q ss_pred ccCcCCceEEEEeecCe------e-Eee--e-ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 GTTTAGLTVSALRENGE------W-HLE--A-GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 ~~~~~glt~~~~~~~~~------~-~~~--~-G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
......+..... +... . .+. . -.-......|++|||+|+|+...+++|+..||+
T Consensus 83 ~g~~~~~dv~ei-daas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 83 PGGPGSLDVTEI-DAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred cCCCCCCcEEEe-cccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 000000111100 1000 0 000 0 001234578999999999999999999999996
No 117
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.29 E-value=1e-06 Score=87.09 Aligned_cols=91 Identities=24% Similarity=0.375 Sum_probs=63.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++++.|++||||+.++++++..+++. ++.......... |+.. .+. .+......|.+..|++|++||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC-CCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 589999999999999999999888752 222111111000 1000 000 01112246888999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+...|..|+.+++.+.+.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~ 263 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQ 263 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEE
Confidence 9999999999999999998864
No 118
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.4e-06 Score=89.35 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC----------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT---------- 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~---------- 275 (345)
.+|+|++.+++.|.-++..+ |-...+||+|++|+|||++++.+++.+.-.....+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 46899999999998888866 222358999999999999999999876421111110000
Q ss_pred --cCCc---eEEEEee--c-CeeEeee-c-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 --TAGL---TVSALRE--N-GEWHLEA-G-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 --~~gl---t~~~~~~--~-~~~~~~~-G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
...+ .++.... . .+. ++. - .-..+...|++|||+++|+...+++|+..||+
T Consensus 85 g~~~DvlEidaAs~~gVd~IRel-le~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE 145 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREV-LENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE 145 (709)
T ss_pred cCccceEEEeccccCCHHHHHHH-HHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh
Confidence 0000 0000000 0 000 000 0 00224567999999999999999999999996
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.3e-06 Score=82.71 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=68.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
.++.||+.++..+.-.+-.|. -..++||+||||+|||++++.+++.+....... ...+.......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~----~~~~~~~~~~~ 81 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----------LAQALLFCGPRGVGKTTCARILARKINQPGYDD----PNEDFSFNIFE 81 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCCCcceEE
Confidence 467899999998888887662 124899999999999999999998764311100 00011000000
Q ss_pred -ec-C-----ee---Eeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 286 -EN-G-----EW---HLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 286 -~~-~-----~~---~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+. + .. .-++... ..++..+++|||++.+....+++|+..||+
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~ 134 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE 134 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 00 0 00 0000011 134567999999999999999999999987
No 120
>KOG0734|consensus
Probab=98.29 E-value=2.6e-07 Score=90.31 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=58.1
Q ss_pred cCcccccchHHHHHHHHHHh--CCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc-C--cCC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLA--GGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT-T--TAG 278 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~--~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~-~--~~g 278 (345)
-+.++.|.|++|.-+.-... ....+...-|.++. --|||+||||||||.|+|++|..+.-++|...... . -+|
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLP--KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP--KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCC--CceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 36788899999876644321 11111112222222 26999999999999999999999887776442210 1 112
Q ss_pred ceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 279 LTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 279 lt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
..|..+|+ +-+-|-. ....|+||||||..
T Consensus 380 vGArRVRd-----LF~aAk~-~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 VGARRVRD-----LFAAAKA-RAPCIIFIDEIDAV 408 (752)
T ss_pred ccHHHHHH-----HHHHHHh-cCCeEEEEechhhh
Confidence 21211121 0000111 12689999999964
No 121
>KOG0738|consensus
Probab=98.28 E-value=2.9e-07 Score=87.01 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=42.8
Q ss_pred cccccchHHHHHHHHHHhCCCc-ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVG-RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~-~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|.|.+.+|+-|.-|.+-... .....|.+ |..-.|||+||||||||.|||+++......+|..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 3678887777666555442211 11112222 4445899999999999999999999887666544
No 122
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.27 E-value=3.2e-06 Score=79.74 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=64.7
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE----EEcCCccCcCCceEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV----LTTGVGTTTAGLTVS 282 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~----~~~~~~~~~~glt~~ 282 (345)
+++|++.++..+.-++-.+.. .|+||+|+||+|||++++.+++.+.... +..-..+...+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~------------~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-- 83 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNM------------PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGID-- 83 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCC------------CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchH--
Confidence 467999888888877765421 3799999999999999999988753211 1100000000000
Q ss_pred EEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 283 ALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 283 ~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..++. .++. ....+..++..+++|||++.+..+.+..|+..||+
T Consensus 84 ~~~~~i~~~~-~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~ 128 (319)
T PRK00440 84 VIRNKIKEFA-RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM 128 (319)
T ss_pred HHHHHHHHHH-hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc
Confidence 00000 0000 00011123467999999999999989999999985
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.1e-06 Score=87.25 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeec-eeeeCCCCChHHHHHHHHHhhCCCeE----EEcCC-------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH-LLLVGDPGTGKSEILKFAKRMSPRSV----LTTGV------- 272 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~-iLl~G~pGtGKs~l~~~i~~~~~~~~----~~~~~------- 272 (345)
+.+|+||+.+++.+.-++..|.- .| +||.||+|||||++++.+++.+.-.- .-+|.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRI------------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 35789999999999888887621 36 69999999999999999998764110 00000
Q ss_pred ccCcCC-ceEEEEeec----CeeEe-----ee-ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 GTTTAG-LTVSALREN----GEWHL-----EA-GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 ~~~~~g-lt~~~~~~~----~~~~~-----~~-G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..+..+ +.... -+. +--.+ .. -.-..++..|++|||++.|+...+++|+..||+
T Consensus 80 ~~~~~~~~dvie-idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 80 APNGPGSIDVVE-LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred hcccCCCceEEE-eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc
Confidence 000000 11100 000 00000 00 001235678999999999999999999999998
No 124
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.5e-06 Score=88.78 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=68.7
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc------------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG------------ 273 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~------------ 273 (345)
-+|+|++.++..+.-++..|. -.+.+||+||+|+|||++++.+++.+.-.-...+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 478999999999998887662 113469999999999999999998764210000000
Q ss_pred cCcCCc---eEEEE---eecCeeEeeec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 TTTAGL---TVSAL---RENGEWHLEAG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 ~~~~gl---t~~~~---~~~~~~~~~~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+...+ .++.. .+-.+..-... .-..++..|++|||+++|+...+++|+..||+
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe 145 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE 145 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc
Confidence 000000 00000 00000000000 00235678999999999999999999999997
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.3e-06 Score=85.96 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=68.1
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeec-eeeeCCCCChHHHHHHHHHhhCCC----eEEEcCC----ccC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESH-LLLVGDPGTGKSEILKFAKRMSPR----SVLTTGV----GTT 275 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~-iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~----~~~ 275 (345)
+-+++||+.++..+..++..|.- .| +||+||||+|||++++.+++.+.- ....++. ...
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl------------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRL------------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 34689999999999988877621 25 489999999999999999987621 1000000 000
Q ss_pred cCCc-------eEEEEe--ec-CeeEeeec--eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 TAGL-------TVSALR--EN-GEWHLEAG--ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 ~~gl-------t~~~~~--~~-~~~~~~~G--~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..|. .++..+ +. .+. ++.. .-..+...|++|||++.|+.+.+++|+..||+
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRel-ie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE 143 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIREL-IEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE 143 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHH-HHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh
Confidence 0000 000000 00 000 0000 01225578999999999999999999999997
No 126
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.6e-06 Score=88.28 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC---------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT--------- 275 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~--------- 275 (345)
+-++.||+.++..+.-++..+. -.+.+||+||+|||||++++.+++.+.-.-...+.+..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 3478999999999988888662 12347899999999999999999876421100110000
Q ss_pred ---cCC---ceEEEEee-c--CeeEeeec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 ---TAG---LTVSALRE-N--GEWHLEAG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 ---~~g---lt~~~~~~-~--~~~~~~~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
... +.++.... + .+..-... +-..++..|++|||+++|....+++|+..||+
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE 145 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC
Confidence 000 01100000 0 00000000 01235678999999999999999999999997
No 127
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.25 E-value=1.8e-07 Score=93.18 Aligned_cols=63 Identities=29% Similarity=0.179 Sum_probs=40.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|.|++.+|.-+......-.......| ++..-.|||+||||||||.++++++..+..+++..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~g--l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYG--LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4688999998766532110000000001 11223799999999999999999999988776544
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.25 E-value=8.5e-07 Score=83.83 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceee-eCCCCChHHHHHHHHHhhCCCeE-EEcCCccCcCCceEEE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLL-VGDPGTGKSEILKFAKRMSPRSV-LTTGVGTTTAGLTVSA 283 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl-~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~~~~~glt~~~ 283 (345)
-++.|++.++..+.-.+-.|.. .|++| +||||+|||++++++++.....+ +.+... .. ...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~------------~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~---~~--~~~ 83 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRI------------PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD---CR--IDF 83 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCC------------CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc---cc--HHH
Confidence 3678999988887777655421 25555 89999999999999998765433 222211 00 000
Q ss_pred Eeec-CeeEeeeceeeecCCcEEEEcCCCCC-CHHhHHHHHHHHhC
Q psy1366 284 LREN-GEWHLEAGALVLSDGGVCCIDEFSSI-KEHDRTSIHEAMEQ 327 (345)
Q Consensus 284 ~~~~-~~~~~~~G~l~la~~gi~~IDEidk~-~~~~~~~l~eame~ 327 (345)
.++. .++. .... ..++..+++|||+|.+ ..+.+..|...||+
T Consensus 84 i~~~l~~~~-~~~~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 84 VRNRLTRFA-STVS-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred HHHHHHHHH-Hhhc-ccCCCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 0110 0110 0000 1245789999999999 66778888888986
No 129
>KOG0736|consensus
Probab=98.24 E-value=1.6e-06 Score=88.13 Aligned_cols=102 Identities=25% Similarity=0.253 Sum_probs=57.4
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc----CCceEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT----AGLTVS 282 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~----~glt~~ 282 (345)
+|-|.+.+|.-|+-.+--.-.-..=-+...|...-|||+||||||||.+||++|..+.-++...- +... .|-.-.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK-GPELLNMYVGqSE~ 751 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK-GPELLNMYVGQSEE 751 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec-CHHHHHHHhcchHH
Confidence 46678899988776543211100001122344458999999999999999999988765543221 1000 000000
Q ss_pred EEeecCeeEeeeceeeecCCcEEEEcCCCCCCH
Q psy1366 283 ALRENGEWHLEAGALVLSDGGVCCIDEFSSIKE 315 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~ 315 (345)
-+|+ -| . ..-.|...|+|+||+|.+.+
T Consensus 752 NVR~--VF---e-rAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 752 NVRE--VF---E-RARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred HHHH--HH---H-HhhccCCeEEEeccccccCc
Confidence 0010 00 0 01235689999999998765
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-06 Score=88.43 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=70.2
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCC-----
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAG----- 278 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~g----- 278 (345)
.+.++.|++.++..+.-++..+ |-..++||+||||+|||++++.+++.+.-... .+......|
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~-~~~~~~~Cg~C~~C 81 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNS-DKPTPEPCGKCELC 81 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCc-CCCCCCCCcccHHH
Confidence 3456889999999888888765 22258999999999999999999988743110 000000001
Q ss_pred --------ceEEEEee---cC-----eeEeeec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 279 --------LTVSALRE---NG-----EWHLEAG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 279 --------lt~~~~~~---~~-----~~~~~~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+....... .+ +..-... .-+.+...|++|||+|+|+.+.+++|+..||+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc
Confidence 00000000 00 0000000 00235567999999999999999999999997
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.21 E-value=1.8e-06 Score=90.71 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC----------CCeEEEcCCccC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS----------PRSVLTTGVGTT 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~----------~~~~~~~~~~~~ 275 (345)
..++|++..-..++-.|... ...|++|+||||||||.+++.+++.+ ...++....++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH
Confidence 35789976655555555433 11499999999999999999999865 122222211111
Q ss_pred cCCceEEEEeecCeeEeee-cee---eecCCcEEEEcCCCCCC---------HHhHHHHHHHHhCCEEEEe
Q psy1366 276 TAGLTVSALRENGEWHLEA-GAL---VLSDGGVCCIDEFSSIK---------EHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 276 ~~glt~~~~~~~~~~~~~~-G~l---~la~~gi~~IDEidk~~---------~~~~~~l~eame~~~i~i~ 333 (345)
.+|.. .+ |+|.-.- ..+ ....+.|+||||++.+- .+.++.|..+|+.+.|.+-
T Consensus 250 ~a~~~---~~--g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~I 315 (731)
T TIGR02639 250 LAGTK---YR--GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCI 315 (731)
T ss_pred hhhcc---cc--chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 11100 00 1111000 001 11235799999999773 3456788999999988764
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.3e-06 Score=85.81 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeece-eeeCCCCChHHHHHHHHHhhCCC--eEE-EcCC---------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHL-LLVGDPGTGKSEILKFAKRMSPR--SVL-TTGV--------- 272 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~i-Ll~G~pGtGKs~l~~~i~~~~~~--~~~-~~~~--------- 272 (345)
.+|+||+.++..+.-++..+.- .|. ||+||||+|||++++++++.+.- ... .+|.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l------------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL------------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 4689999999988888776521 255 99999999999999999987631 000 0000
Q ss_pred ccC--cCCceEEEEee--c-CeeEeeece-eeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 GTT--TAGLTVSALRE--N-GEWHLEAGA-LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 ~~~--~~glt~~~~~~--~-~~~~~~~G~-l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+.+ ...+.++.... . .+..-.... -..++..+++|||++.++.+.+++|+..||+
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe 142 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE 142 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh
Confidence 000 00011110000 0 000000000 1235678999999999999999999999988
No 133
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.20 E-value=1.9e-06 Score=78.98 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=62.9
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhC-------CCeEEEcCC---ccCc-CCceEEEEee--cCeeEeeeceeeecCCc
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMS-------PRSVLTTGV---GTTT-AGLTVSALRE--NGEWHLEAGALVLSDGG 303 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~-------~~~~~~~~~---~~~~-~glt~~~~~~--~~~~~~~~G~l~la~~g 303 (345)
|+..+|||.||.|.|||.|++.+.++- ++-+.+.-. +.++ ..|+.-+ +. +|.-.-.+|.|-.||||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCc
Confidence 445699999999999999999997642 333322211 0000 0011100 10 12223457889999999
Q ss_pred EEEEcCCCCCCHHhHHHHHHHHhCCEE
Q psy1366 304 VCCIDEFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 304 i~~IDEidk~~~~~~~~l~eame~~~i 330 (345)
.+|+|||..+..+.|.-|+.|+|+...
T Consensus 285 mlfldeigelgadeqamllkaieekrf 311 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKRF 311 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhcc
Confidence 999999999999999999999998654
No 134
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.19 E-value=4.2e-06 Score=81.87 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe-----E-EEc--CCccCc-
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS-----V-LTT--GVGTTT- 276 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~-----~-~~~--~~~~~~- 276 (345)
-++++.+..-..++.+|..+ -|++|.|+||||||++++.++..+... + .+. ...+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeD 240 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED 240 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHH
Confidence 45666666666677777654 399999999999999999999876421 1 000 000000
Q ss_pred --CCceEEEEeecCeeEeeecee----eec-----CCcEEEEcCCCCCCHHh-HHHHHHHHhCC
Q psy1366 277 --AGLTVSALRENGEWHLEAGAL----VLS-----DGGVCCIDEFSSIKEHD-RTSIHEAMEQQ 328 (345)
Q Consensus 277 --~glt~~~~~~~~~~~~~~G~l----~la-----~~gi~~IDEidk~~~~~-~~~l~eame~~ 328 (345)
.|+.. ....+...+|.+ ..| .+.+++|||+|+.+.+. ...++.+||.+
T Consensus 241 FI~G~rP----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~ 300 (459)
T PRK11331 241 FIQGYRP----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHD 300 (459)
T ss_pred HhcccCC----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcccc
Confidence 01100 012345556643 111 35799999999999654 66778888853
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=4e-06 Score=86.63 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC-CccC----cCCce
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG-VGTT----TAGLT 280 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~-~~~~----~~glt 280 (345)
.+|.||+.+++.+.-++..| |..+.+||+||+|+|||++|+.+++.+.-.-.... .... ..|..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 46889999999998888766 22234699999999999999999987642110000 0000 00000
Q ss_pred EEEE-eec----C-----eeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 281 VSAL-REN----G-----EWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 281 ~~~~-~~~----~-----~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.-+. -++ + +..-....+ ..++..|++|||++.|....+++|+..||+
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE 144 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE 144 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc
Confidence 0000 000 0 000000001 224568999999999999999999999997
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=5.7e-06 Score=84.07 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=69.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE----EcCC------ccC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL----TTGV------GTT 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~----~~~~------~~~ 275 (345)
-+|+||+.++..+.-++..|. -.+.+||+||||+|||++++.+++.+.-.-. .+|. -..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 478999999999888887662 1135999999999999999999987642100 0000 000
Q ss_pred cCCceEEEEeecC------ee-Eee--ec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 276 TAGLTVSALRENG------EW-HLE--AG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 276 ~~glt~~~~~~~~------~~-~~~--~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
...+..... ++. +. .+. .- .-..++..|++|||++.|+...+++|+..||+
T Consensus 85 ~~~~dv~~i-dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe 145 (563)
T PRK06647 85 DNSLDVIEI-DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE 145 (563)
T ss_pred CCCCCeEEe-cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc
Confidence 000110000 000 00 000 00 00235678999999999999999999999997
No 137
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.9e-06 Score=88.01 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE--EEcCCccCc-------
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV--LTTGVGTTT------- 276 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~--~~~~~~~~~------- 276 (345)
-+|+||+.+...|.-++..+. -.+-+||+|++|+|||++++.+++.+.-.- -..|.....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 467899999999999888762 222359999999999999999998764100 000000000
Q ss_pred -----------CCceEEEEe------ec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 277 -----------AGLTVSALR------EN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 277 -----------~glt~~~~~------~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..+.++..+ +- ......+ ..+...|++|||+|.|+.+.+++|+..||+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p---~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE 150 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP---VQGRFKVFMIDEVHMLTNTAFNAMLKTLEE 150 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc---ccCCceEEEEEChhhCCHHHHHHHHHhccc
Confidence 011111000 00 0000000 123457999999999999999999999997
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.7e-06 Score=88.60 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE------------EEcCC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV------------LTTGV 272 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~------------~~~~~ 272 (345)
+.+|+||+.++..+.-++..| |-.+++||.||||+|||++++.+++.+.-.. .-+|.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 447899999999988888766 2224599999999999999999998763210 00000
Q ss_pred c------cCcCCceEEEEeecCeeE-----------eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 G------TTTAGLTVSALRENGEWH-----------LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 ~------~~~~glt~~~~~~~~~~~-----------~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
- .....+..... ++.... +.-+ -..++.-|++|||+++|+...+++|+..||+
T Consensus 84 C~sC~~~~~g~~~n~~~~-d~~s~~~vd~Ir~l~e~~~~~-P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 84 CESCRDFDAGTSLNISEF-DAASNNSVDDIRQLRENVRYG-PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred CHHHHHHhccCCCCeEEe-cccccCCHHHHHHHHHHHHhh-hhcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0 00000111000 100000 0000 1345678999999999999999999999998
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.5e-06 Score=82.24 Aligned_cols=110 Identities=22% Similarity=0.172 Sum_probs=67.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE-----cCC------cc
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT-----TGV------GT 274 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~-----~~~------~~ 274 (345)
-+|+||+.++..+.-++..|. -...+||+||||+|||++++.+++.+.-.... +|. ..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~ 85 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS 85 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence 478999999988887777652 12358999999999999999999876321000 000 00
Q ss_pred CcCCceEEEEeec----C-eeE---ee-ec-eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 275 TTAGLTVSALREN----G-EWH---LE-AG-ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 275 ~~~glt~~~~~~~----~-~~~---~~-~G-~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+......... ++ + +.. .+ .. .-..++..|++|||+|+|+.+.+++|+..||+
T Consensus 86 ~~~~~d~~~i-~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 86 SGTSLDVLEI-DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred cCCCCceEEe-eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 0000000000 00 0 000 00 00 00235678999999999999999999999998
No 140
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=4.6e-07 Score=87.55 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=25.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++||+||||||||++++++++.+...++
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 36999999999999999999998876654
No 141
>PRK04195 replication factor C large subunit; Provisional
Probab=98.11 E-value=2.8e-06 Score=85.20 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
.++.|++.++..+.-.+..... | +...++||+||||+|||++++++++.++..+..... +..... ...+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~-----g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna-sd~r~~--~~i~ 82 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK-----G---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA-SDQRTA--DVIE 82 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc-----C---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc-cccccH--HHHH
Confidence 4578998888777665543210 0 112489999999999999999999988654332211 100000 0000
Q ss_pred ec-CeeEeeeceeeecCCcEEEEcCCCCCCH----HhHHHHHHHHhCC
Q psy1366 286 EN-GEWHLEAGALVLSDGGVCCIDEFSSIKE----HDRTSIHEAMEQQ 328 (345)
Q Consensus 286 ~~-~~~~~~~G~l~la~~gi~~IDEidk~~~----~~~~~l~eame~~ 328 (345)
.- +. ......+.-....+++|||+|.+.. ....+|+..|+..
T Consensus 83 ~~i~~-~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~ 129 (482)
T PRK04195 83 RVAGE-AATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA 129 (482)
T ss_pred HHHHH-hhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC
Confidence 00 00 0000111112567999999999976 4567888888854
No 142
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.09 E-value=4.6e-06 Score=80.80 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=52.1
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccC-C-C-CCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGG-E-D-GSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~-~-~-~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|.+.+...|+|++.+|+++..++..+..+.. . + +...+ ..||||+||||+|||++++++++.+..+++
T Consensus 5 ~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~-p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 5 EIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVT-PKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccC-CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46677778899999999999999997643321 1 1 11111 259999999999999999999999876543
No 143
>CHL00176 ftsH cell division protein; Validated
Probab=98.08 E-value=1.3e-06 Score=89.76 Aligned_cols=63 Identities=25% Similarity=0.251 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHhC--CCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAG--GVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~--g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
+.+|.|.+.+|..+.-.+.- .......-|. +...++||+||||||||.++++++..+..+++.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~--~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGA--KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 35688988888765443211 1000000111 223479999999999999999999988765543
No 144
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=1e-05 Score=82.78 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=70.7
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE-EEc-CCccCcCC----
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV-LTT-GVGTTTAG---- 278 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~-~~~~~~~g---- 278 (345)
+.+++||+.+++.+.-++..| |-..++||.|++|+|||++++.+++.+.-.. ... |......|
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 347899999999998888776 2224699999999999999999998764210 011 10000111
Q ss_pred -----------c---eEEEEe--ec-Cee--EeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 279 -----------L---TVSALR--EN-GEW--HLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 279 -----------l---t~~~~~--~~-~~~--~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+ .++... +. .+. ..... -..++..|++|||++.|+...+++|+..||+
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~-P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR-PVSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc-hhcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 0 000000 00 000 00000 1346678999999999999999999999997
No 145
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=3.7e-06 Score=80.67 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=69.8
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----E--EEcCCc-----
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----V--LTTGVG----- 273 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----~--~~~~~~----- 273 (345)
...++||+.++..+.-++..| |..+-+||.|++|+||+++++.+++.+.-. . ...+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 457899999999999999887 333459999999999999999999876321 0 000000
Q ss_pred -------cCcCCceEEEEe---e-cCee--Eee-------eceee----ecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 -------TTTAGLTVSALR---E-NGEW--HLE-------AGALV----LSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 -------~~~~glt~~~~~---~-~~~~--~~~-------~G~l~----la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+..++.. +.+ + ++.+ .+. ...+. ....-|++|||+|.|+...+++|+..||+
T Consensus 91 ~c~~i~~~~hPdl~~-l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 91 VWRQIAQGAHPNLLH-ITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred HHHHHHcCCCCCEEE-eecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 00011110 000 0 0000 000 00011 12345999999999999999999999997
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=2.3e-06 Score=69.31 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=46.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCCccCcCCce-------EEEEeecCeeEeeeceeeecCC---cEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGVGTTTAGLT-------VSALRENGEWHLEAGALVLSDG---GVC 305 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~~~~~~glt-------~~~~~~~~~~~~~~G~l~la~~---gi~ 305 (345)
.+++|+||||+|||++++.++..+... ++.+.......... ................+..+.. .++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 489999999999999999999988764 23332211110000 0000000000000122223333 999
Q ss_pred EEcCCCCCCHHhHHHHH
Q psy1366 306 CIDEFSSIKEHDRTSIH 322 (345)
Q Consensus 306 ~IDEidk~~~~~~~~l~ 322 (345)
+|||++.+.........
T Consensus 83 iiDei~~~~~~~~~~~~ 99 (148)
T smart00382 83 ILDEITSLLDAEQEALL 99 (148)
T ss_pred EEECCcccCCHHHHHHH
Confidence 99999999887665544
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.06 E-value=1.2e-06 Score=85.37 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHhCCCc---ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVG---RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~---~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
+|.|.+..|..+.-++.-... ....-| +...-++||+||||||||+++++++..+...++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~G--l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi 208 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIG--IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI 208 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 577877766655444321100 000011 122248999999999999999999998776544
No 148
>KOG0727|consensus
Probab=98.06 E-value=8.4e-07 Score=79.57 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=47.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE-EcCCccCcCCceEEEEeecCeeEeeeceeeec---CCcEEEEcCCCCC--
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL-TTGVGTTTAGLTVSALRENGEWHLEAGALVLS---DGGVCCIDEFSSI-- 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~-~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la---~~gi~~IDEidk~-- 313 (345)
-.+||+||||||||+|++++++....++. +.|.- +....+.++..++ -..+-+| ...|+||||+|.+
T Consensus 190 rgvllygppg~gktml~kava~~t~a~firvvgse-----fvqkylgegprmv--rdvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE-----FVQKYLGEGPRMV--RDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchheeeeccHH-----HHHHHhccCcHHH--HHHHHHHhccCCcEEEeehhhhHhh
Confidence 37999999999999999999987544332 22210 0000000000000 0001122 2579999999863
Q ss_pred ---------CHHhHHHHHHHHhC
Q psy1366 314 ---------KEHDRTSIHEAMEQ 327 (345)
Q Consensus 314 ---------~~~~~~~l~eame~ 327 (345)
+.+.|..|+|.+.|
T Consensus 263 krfdaqtgadrevqril~ellnq 285 (408)
T KOG0727|consen 263 KRFDAQTGADREVQRILIELLNQ 285 (408)
T ss_pred hhccccccccHHHHHHHHHHHHh
Confidence 44667788888875
No 149
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.05 E-value=1.2e-06 Score=88.00 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.++||+||||||||.++++++..+..+++.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 479999999999999999999988766543
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.7e-06 Score=81.43 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=69.2
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe--EE--EcCC-------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS--VL--TTGV------- 272 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~--~~--~~~~------- 272 (345)
.+-++.||+.+...+.-++..+.- .+.+||+||||+|||++++.+++.+.-. .. .++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i-----------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRV-----------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCC-----------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 334678999999999888876621 1236899999999999999999976521 00 0000
Q ss_pred -ccCcCCce---EEEEeecCee-Eee--ecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 273 -GTTTAGLT---VSALRENGEW-HLE--AGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 273 -~~~~~glt---~~~~~~~~~~-~~~--~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
+++...+. ++..+.-... .+. .... ..++..|++|||+++|+.+.+++|+..||+-
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep 146 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence 00001110 0000000000 000 0000 2355789999999999999999999999984
No 151
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.9e-05 Score=74.79 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=70.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe--------E-EEcCCccCc
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS--------V-LTTGVGTTT 276 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~--------~-~~~~~~~~~ 276 (345)
.+|.||+.++..+..++..|. -.+-.||+||+|+||+++++.+++.+--. + ..... ..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~ 70 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NK 70 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cC
Confidence 468899999999999987762 22345899999999999999999864210 0 00000 00
Q ss_pred CCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC---CEEEE
Q psy1366 277 AGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ---QTISV 332 (345)
Q Consensus 277 ~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~---~~i~i 332 (345)
.......+|+--++. ... -..++.-|++||+.|+|+...+++|+..||+ +++-|
T Consensus 71 ~~i~v~~ir~~~~~~-~~~-p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~i 127 (313)
T PRK05564 71 KSIGVDDIRNIIEEV-NKK-PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFII 127 (313)
T ss_pred CCCCHHHHHHHHHHH-hcC-cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 000000001100000 001 1235678999999999999999999999998 55554
No 152
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.01 E-value=1.3e-05 Score=72.23 Aligned_cols=68 Identities=10% Similarity=0.224 Sum_probs=47.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
+++|+|+||||||.|++++++.+. ..++++..... .. .-...+.++++|||++.++..
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~------------~~------~~~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL------------LA------FDFDPEAELYAVDDVERLDDA 105 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH------------HH------HhhcccCCEEEEeChhhcCch
Confidence 899999999999999999988652 12222211100 00 011234679999999999998
Q ss_pred hHHHHHHHHh
Q psy1366 317 DRTSIHEAME 326 (345)
Q Consensus 317 ~~~~l~eame 326 (345)
.+..|+..|+
T Consensus 106 ~~~~L~~~~~ 115 (227)
T PRK08903 106 QQIALFNLFN 115 (227)
T ss_pred HHHHHHHHHH
Confidence 8999988884
No 153
>KOG0652|consensus
Probab=98.00 E-value=1.9e-06 Score=77.62 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=48.7
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCc--eEEEEeecCeeEeeeceeeecC---CcEEEEcCCC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGL--TVSALRENGEWHLEAGALVLSD---GGVCCIDEFS 311 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~gl--t~~~~~~~~~~~~~~G~l~la~---~gi~~IDEid 311 (345)
|..-.+|++||||||||.++|+++......+. ..+|- ..-...++.. +.-.++.+|. ..|+||||+|
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL------KLAgPQLVQMfIGdGAk--LVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAAQTNATFL------KLAGPQLVQMFIGDGAK--LVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHHhccchHH------HhcchHHHhhhhcchHH--HHHHHHHHhhccCCeEEEEechh
Confidence 44457999999999999999999876432111 11110 0000011100 1111222332 5799999998
Q ss_pred CCC-----------HHhHHHHHHHHhC
Q psy1366 312 SIK-----------EHDRTSIHEAMEQ 327 (345)
Q Consensus 312 k~~-----------~~~~~~l~eame~ 327 (345)
.+. .+.|..++|.+.|
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHh
Confidence 643 3567889999876
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.99 E-value=4.2e-06 Score=79.05 Aligned_cols=86 Identities=24% Similarity=0.261 Sum_probs=52.5
Q ss_pred ec-eeeeCCCCChHHHHHHHHHhhCCCeEEEc---------------CCccCcCCceEEEEeec----------Ce-eEe
Q psy1366 240 SH-LLLVGDPGTGKSEILKFAKRMSPRSVLTT---------------GVGTTTAGLTVSALREN----------GE-WHL 292 (345)
Q Consensus 240 ~~-iLl~G~pGtGKs~l~~~i~~~~~~~~~~~---------------~~~~~~~glt~~~~~~~----------~~-~~~ 292 (345)
.| +||.||||+|||+++.++++.+.-..... |.......++++..+.. .+ ...
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 37 99999999999999999998664111000 00001111222211110 00 000
Q ss_pred eeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 293 EAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 293 ~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
.+ ..+..-|++|||+|.|..+.+++|+..||+-
T Consensus 104 ~~---~~~~~kviiidead~mt~~A~nallk~lEep 136 (325)
T COG0470 104 SP---LEGGYKVVIIDEADKLTEDAANALLKTLEEP 136 (325)
T ss_pred CC---CCCCceEEEeCcHHHHhHHHHHHHHHHhccC
Confidence 01 0234579999999999999999999999973
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.98 E-value=3.1e-06 Score=90.01 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----------EEEcCCccC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----------VLTTGVGTT 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----------~~~~~~~~~ 275 (345)
..++|++..-..++..|.... ..|++|+||||+|||++++.+++..... ++....+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 458899776555555555431 1399999999999999999999876321 111111110
Q ss_pred cCCceEEEEeecCeeEeeec-eee---e-cCCcEEEEcCCCCCCH-----HhHH---HHHHHHhCCEEEEeeC
Q psy1366 276 TAGLTVSALRENGEWHLEAG-ALV---L-SDGGVCCIDEFSSIKE-----HDRT---SIHEAMEQQTISVAKD 335 (345)
Q Consensus 276 ~~glt~~~~~~~~~~~~~~G-~l~---l-a~~gi~~IDEidk~~~-----~~~~---~l~eame~~~i~i~k~ 335 (345)
.+|- +--|+|.-.-. .+. . ..+.|+||||++.+.. ..++ .|..+|+.|.+.+--|
T Consensus 255 ~ag~-----~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~Iga 322 (852)
T TIGR03345 255 QAGA-----SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAA 322 (852)
T ss_pred hccc-----ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEe
Confidence 1110 00012210000 010 0 1357999999999853 2233 5889999999887443
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=7.7e-06 Score=78.93 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+|+||+.+++.+.-++..| |-.+-+||.||+|+||++++.++++.+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999998877 222349999999999999999998865
No 157
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.96 E-value=4e-06 Score=88.26 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
+|.|++.+|..+.-.+.-.... ..-.....+....+||+||||||||.++++++..+...++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi 516 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI 516 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5778888888876665422110 0000011222346999999999999999999998876554
No 158
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.95 E-value=1.8e-06 Score=84.99 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=25.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++||+||||||||.++++++..+...++
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 47999999999999999999998765543
No 159
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.94 E-value=9.9e-06 Score=72.57 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=45.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKE 315 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~ 315 (345)
.+++|+|+||||||.+++++++.+.. .+|++...-... ..++ + .. +...++++|||++.++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~-~--~~--~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA---------DPEV-L--EG--LEQADLVCLDDVEAIAG 104 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh---------HHHH-H--hh--cccCCEEEEeChhhhcC
Confidence 48999999999999999999976531 223221110000 0000 0 00 12346999999999987
Q ss_pred Hh--HHHHHHHHh
Q psy1366 316 HD--RTSIHEAME 326 (345)
Q Consensus 316 ~~--~~~l~eame 326 (345)
.. +..|.++++
T Consensus 105 ~~~~~~~L~~~l~ 117 (226)
T TIGR03420 105 QPEWQEALFHLYN 117 (226)
T ss_pred ChHHHHHHHHHHH
Confidence 44 777877764
No 160
>KOG0742|consensus
Probab=97.92 E-value=1.1e-05 Score=76.99 Aligned_cols=78 Identities=27% Similarity=0.367 Sum_probs=49.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec---CeeEeeeceeeecC-CcEEEEcCCC-----
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN---GEWHLEAGALVLSD-GGVCCIDEFS----- 311 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~---~~~~~~~G~l~la~-~gi~~IDEid----- 311 (345)
|||++||||||||.+++-++..++-.. ..-++...+.|.+-.+-.. -+|.- .+. |=++||||.|
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDY-A~mTGGDVAPlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDY-AIMTGGDVAPLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCce-ehhcCCCccccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHHHH
Confidence 899999999999999999998876432 2222333333332211110 12321 122 3468999997
Q ss_pred ----CCCHHhHHHHHHHH
Q psy1366 312 ----SIKEHDRTSIHEAM 325 (345)
Q Consensus 312 ----k~~~~~~~~l~eam 325 (345)
.|+++++.+|.-.+
T Consensus 459 RnktymSEaqRsaLNAlL 476 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALL 476 (630)
T ss_pred hchhhhcHHHHHHHHHHH
Confidence 48888888877665
No 161
>KOG0735|consensus
Probab=97.91 E-value=4e-06 Score=84.67 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=67.8
Q ss_pred ccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc---CCceEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT---AGLTVS 282 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~---~glt~~ 282 (345)
+|-|...+|.++.-.+.-...- .......+|....|||+||||||||.|+.+++..++-.+...-.+.-. -|-.-.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq 747 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ 747 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH
Confidence 5778888888887766543221 111233456667999999999999999999999887554322111000 010000
Q ss_pred EEeecCeeEeeeceeeecCCcEEEEcCCCCCCH-----------HhHHHHHHHHh
Q psy1366 283 ALRENGEWHLEAGALVLSDGGVCCIDEFSSIKE-----------HDRTSIHEAME 326 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~-----------~~~~~l~eame 326 (345)
.+|+ ...+| ..|...|+|.||||.+.+ ..-+.|+.-|+
T Consensus 748 ~vR~---lF~rA---~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelD 796 (952)
T KOG0735|consen 748 NVRD---LFERA---QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELD 796 (952)
T ss_pred HHHH---HHHHh---hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhc
Confidence 0111 00011 235689999999998765 23466777775
No 162
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.2e-06 Score=76.48 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=51.5
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeee---eceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAE---SHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~---~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.+++.+...|+||+.+|++++.||..-..+.. -...+|.. -|||++||+|+|||.++|.+|+++..++
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~q-L~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPF 78 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQ-LEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPF 78 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHh-cCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 46777778899999999999999987543211 00111221 2999999999999999999999997654
No 163
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.89 E-value=5.6e-06 Score=80.21 Aligned_cols=132 Identities=21% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhccChhhHHHHHHhcc--CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHH
Q psy1366 179 RAEVTQFWEDHKYDGLAARNHILASI--CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEIL 256 (345)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~s~--~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~ 256 (345)
.+.+.+-.+.+..+.|. +.|++|+ -|+-+. +..|...+..++.-+ ..+-|++++||||||||.++
T Consensus 160 l~~~~~~R~~FT~dEWi--d~LlrSiG~~P~~~~-~r~k~~~L~rl~~fv----------e~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 160 LDYYKEGRKEFTLEEWI--DVLIRSIGYEPEGFE-ARQKLLLLARLLPLV----------EPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHHHHHHhhcCHHHHH--HHHHHhcCCCcccCC-hHHHHHHHHhhHHHH----------hcCCcEEEECCCCCCHHHHH
Confidence 34454444445556673 7788886 565443 333333333332221 22259999999999999999
Q ss_pred HHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH----hHHHHHHHHhCCEEEE
Q psy1366 257 KFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH----DRTSIHEAMEQQTISV 332 (345)
Q Consensus 257 ~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~----~~~~l~eame~~~i~i 332 (345)
..+...+ ...+|...+.+.|...... -..|.+ +.--+++|||+..++.+ ..+.|-..||+++.+-
T Consensus 227 ~~l~~~~---a~~sG~f~T~a~Lf~~L~~------~~lg~v--~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsR 295 (449)
T TIGR02688 227 NNLSPYV---ILISGGTITVAKLFYNIST------RQIGLV--GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTR 295 (449)
T ss_pred HHHhHHH---HHHcCCcCcHHHHHHHHHH------HHHhhh--ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceec
Confidence 9876441 1223333333332211000 012222 33468999999985543 3467788899988775
Q ss_pred ee
Q psy1366 333 AK 334 (345)
Q Consensus 333 ~k 334 (345)
-+
T Consensus 296 G~ 297 (449)
T TIGR02688 296 GD 297 (449)
T ss_pred cc
Confidence 33
No 164
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.1e-06 Score=85.17 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHHHhCCCcccC-CCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGG-EDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~-~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
++.|.+.+|..+.-+..-...... .....++....+||+||||||||.|+++++..+...+.....++ ++
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~----l~----- 313 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE----LL----- 313 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH----Hh-----
Confidence 355566666655444332211100 00012344458999999999999999999998776654432221 11
Q ss_pred ecCeeEeeece-----ee---ecCCcEEEEcCCCCCCH-----------HhHHHHHHHHh
Q psy1366 286 ENGEWHLEAGA-----LV---LSDGGVCCIDEFSSIKE-----------HDRTSIHEAME 326 (345)
Q Consensus 286 ~~~~~~~~~G~-----l~---la~~gi~~IDEidk~~~-----------~~~~~l~eame 326 (345)
+.|.-+... +. .....|+||||+|++-. ...+.|+..|.
T Consensus 314 --sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d 371 (494)
T COG0464 314 --SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELD 371 (494)
T ss_pred --ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhc
Confidence 112111111 11 23378999999998532 33455666663
No 165
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.86 E-value=8.2e-06 Score=69.78 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE---cCC--------ccCcCC
Q psy1366 210 GLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT---TGV--------GTTTAG 278 (345)
Q Consensus 210 G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~---~~~--------~~~~~g 278 (345)
||+.+.+.+.-++-.+ |-.+.+||.||+|+||+++++.+++.+--.-.. .+. ......
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888888888777766 222347999999999999999998754211000 000 000011
Q ss_pred ceEEEEeecC--eeEee---------eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 279 LTVSALRENG--EWHLE---------AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 279 lt~~~~~~~~--~~~~~---------~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
+... ..++. ....+ .-.-..+..-|++|||+|+|+.+.+++|+..||+-
T Consensus 70 ~~~~-~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep 129 (162)
T PF13177_consen 70 FIII-KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP 129 (162)
T ss_dssp EEEE-ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST
T ss_pred eEEE-ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC
Confidence 1000 00000 00000 00001144679999999999999999999999973
No 166
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.84 E-value=2.2e-06 Score=81.48 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=27.4
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
...-++|+||||||||.+++++++.+.-.+...
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 335799999999999999999999987665433
No 167
>KOG0733|consensus
Probab=97.83 E-value=8.4e-06 Score=81.16 Aligned_cols=60 Identities=28% Similarity=0.341 Sum_probs=44.0
Q ss_pred ccccchHHHHHHHHHHhCCCcccC---CCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGG---EDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~---~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
+|-|++.++.-+-++.+..+.+.. .-|. +...-|||+||||+|||.|||++|+.+.-.+.
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi--~~PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGI--DAPSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCC--CCCCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 466778999999888887654311 1122 23458999999999999999999998765543
No 168
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.83 E-value=9.6e-05 Score=72.12 Aligned_cols=133 Identities=27% Similarity=0.320 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhccChhhHHHHHHhcc--CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHH
Q psy1366 179 RAEVTQFWEDHKYDGLAARNHILASI--CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEIL 256 (345)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~s~--~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~ 256 (345)
++.+.+-.+....+.|. +.|++|+ -|+-+. +..|..++.=|+=-+ ..+.|++=.||.|||||.+-
T Consensus 159 l~~~~~~R~~FT~eEWi--D~LlrS~G~eP~~~~-~r~Kl~~L~RLiPlV----------E~N~NliELgPrGTGKS~vy 225 (457)
T PF13337_consen 159 LDEYREARKEFTTEEWI--DLLLRSIGYEPSGFS-ERQKLLLLARLIPLV----------ERNYNLIELGPRGTGKSYVY 225 (457)
T ss_pred HHHHHHHHHhcCHHHHH--HHHHHhcCCCccccC-HHHHHHHHHhHHHhc----------ccccceEEEcCCCCCceeeh
Confidence 34444444455566773 7888886 554443 355655555555333 23469999999999999996
Q ss_pred HHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCC---HHhHHHHHHHHhCCEEEEe
Q psy1366 257 KFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIK---EHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 257 ~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~---~~~~~~l~eame~~~i~i~ 333 (345)
+ +++|.+..++|...|.+-|..-..+ + ..|.+-. .-++++||+..++ ++....|-..||+|..+..
T Consensus 226 ~---eiSp~~~liSGG~~T~A~LFyn~~~--~----~~GlV~~--~D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG 294 (457)
T PF13337_consen 226 K---EISPYGILISGGQVTVAKLFYNMST--G----QIGLVGR--WDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRG 294 (457)
T ss_pred h---hcCcccEEEECCCcchHHheeeccC--C----cceeeee--ccEEEEEeccCcccCChHHHHHHHHHHhccceeec
Confidence 5 5567788889887777777654322 1 2455443 3478999999876 5555788889999998876
Q ss_pred eC
Q psy1366 334 KD 335 (345)
Q Consensus 334 k~ 335 (345)
+.
T Consensus 295 ~~ 296 (457)
T PF13337_consen 295 KE 296 (457)
T ss_pred cc
Confidence 63
No 169
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=2e-05 Score=81.01 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=69.0
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE-EEcCCc---------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV-LTTGVG--------- 273 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~--------- 273 (345)
-+.+|+||+.++..+.-++..|. -.+.+||+||+|+|||++++.+++.+.-.. ...+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-----------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-----------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 34478999999999888887662 112389999999999999999998763100 000000
Q ss_pred -cCcCCceEEEEe---ecC--ee--Ee-eece-eeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 -TTTAGLTVSALR---ENG--EW--HL-EAGA-LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 -~~~~glt~~~~~---~~~--~~--~~-~~G~-l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.....+...... ..+ +. .+ ++-. -..++..|++|||++.|+.+.+++|+..||+
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 000000000000 000 00 00 0000 0235678999999999999999999999997
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=5.8e-05 Score=71.43 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=70.0
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-------ccCcC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV-------GTTTA 277 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~-------~~~~~ 277 (345)
+.+|+||+.++..+.-++..| |-.+..||.||+|+||+.++.++++.+--.- ..|. ..+..
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHP 70 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCC
Confidence 357899999999999998877 3336999999999999999999987642100 0000 00000
Q ss_pred CceE-E--EEeecC----eeEeeec---------------e--------eeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 GLTV-S--ALRENG----EWHLEAG---------------A--------LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 glt~-~--~~~~~~----~~~~~~G---------------~--------l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+.. . ...++. .+.-..| . -..++..|++||+.|+|+....++|+..||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 1100 0 000000 0000000 0 0235678999999999999999999999995
No 171
>KOG0728|consensus
Probab=97.82 E-value=3.7e-06 Score=75.43 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=49.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE-EEcCCccCcCCceEEEEeecCeeEeeeceeeecC---CcEEEEcCCCCC---
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV-LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSD---GGVCCIDEFSSI--- 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~---~gi~~IDEidk~--- 313 (345)
.+||+||||||||.|+++++....-.+ .++|. .|......++..++ -..++.|. ..|+|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgs-----elvqk~igegsrmv--relfvmarehapsiifmdeidsigs~ 255 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS-----ELVQKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSS 255 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechH-----HHHHHHhhhhHHHH--HHHHHHHHhcCCceEeeecccccccc
Confidence 699999999999999999998765332 33321 11110000100000 01122222 579999999986
Q ss_pred --------CHHhHHHHHHHHhC
Q psy1366 314 --------KEHDRTSIHEAMEQ 327 (345)
Q Consensus 314 --------~~~~~~~l~eame~ 327 (345)
+.+.|..++|.+.|
T Consensus 256 r~e~~~ggdsevqrtmlellnq 277 (404)
T KOG0728|consen 256 RVESGSGGDSEVQRTMLELLNQ 277 (404)
T ss_pred cccCCCCccHHHHHHHHHHHHh
Confidence 45778899999976
No 172
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.3e-06 Score=82.66 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=62.7
Q ss_pred cCcccccchHHHHHHHHHHhCCC--cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc---CC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGV--GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT---AG 278 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~--~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~---~g 278 (345)
-+-++-|.+.+|.-+...+.-=. .+...-|.++ .-.+||+||||||||.|+|+++..++-+.+..+.+... +|
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGaki--PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKI--PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhccccc--ccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 45678888888877655543211 1122223322 23899999999999999999999998876544322111 34
Q ss_pred ceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCH
Q psy1366 279 LTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKE 315 (345)
Q Consensus 279 lt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~ 315 (345)
..++.+|+- ..++. . ....|+||||+|....
T Consensus 226 vGAsRVRdL---F~qAk--k-~aP~IIFIDEiDAvGr 256 (596)
T COG0465 226 VGASRVRDL---FEQAK--K-NAPCIIFIDEIDAVGR 256 (596)
T ss_pred CCcHHHHHH---HHHhh--c-cCCCeEEEehhhhccc
Confidence 444444431 11111 1 1257999999997643
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.81 E-value=1.3e-05 Score=85.53 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC----------eEEEcCCccCc
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR----------SVLTTGVGTTT 276 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~----------~~~~~~~~~~~ 276 (345)
.++|++..-..++-.|... ..-|++|+||||+|||++++.++..+.. .++....++..
T Consensus 179 ~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ 246 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 246 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh
Confidence 4899976655555555433 1138999999999999999999987632 22211111111
Q ss_pred CCceEEEEeecCeeEeeec-ee---eec-CCcEEEEcCCCCCCH--------HhHHHHHHHHhCCEEEEeeC
Q psy1366 277 AGLTVSALRENGEWHLEAG-AL---VLS-DGGVCCIDEFSSIKE--------HDRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 277 ~glt~~~~~~~~~~~~~~G-~l---~la-~~gi~~IDEidk~~~--------~~~~~l~eame~~~i~i~k~ 335 (345)
+|. +..|+|.-.-- .+ ..+ ..-|+||||++.+.. +.++.|..+|+.+.+.+--+
T Consensus 247 ag~-----~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~Iga 313 (857)
T PRK10865 247 AGA-----KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGA 313 (857)
T ss_pred hcc-----chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEc
Confidence 110 10122210000 01 111 245999999998853 24677888888888876443
No 174
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.80 E-value=1.2e-05 Score=85.64 Aligned_cols=111 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC----------CeEEEcCCccCc
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP----------RSVLTTGVGTTT 276 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~----------~~~~~~~~~~~~ 276 (345)
.++|.+.....++-.|... ..-|++|+||||+|||.+++.++.... ..++....++-.
T Consensus 180 ~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 4889877666666666533 113999999999999999999988652 223322111111
Q ss_pred CCceEEEEeecCeeEeeecee----eecCCcEEEEcCCCCCCH--------HhHHHHHHHHhCCEEEEee
Q psy1366 277 AGLTVSALRENGEWHLEAGAL----VLSDGGVCCIDEFSSIKE--------HDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 277 ~glt~~~~~~~~~~~~~~G~l----~la~~gi~~IDEidk~~~--------~~~~~l~eame~~~i~i~k 334 (345)
+|. +--|+|.-.-..+ ....+.|+|||||+.+-. +..+.|..+|+.+.+.+--
T Consensus 248 ag~-----~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~Ig 312 (821)
T CHL00095 248 AGT-----KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIG 312 (821)
T ss_pred ccC-----CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEE
Confidence 111 0012221110111 112356899999975432 3456788899998887643
No 175
>KOG0731|consensus
Probab=97.79 E-value=1e-05 Score=83.34 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=43.3
Q ss_pred cCcccccchHHHHHHHHHH--hCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 204 ICPAIYGLYLVKLCLAVVL--AGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l--~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-+.++-|.+.+|.-|.-.. .....+...-|.++. --+||+||||||||.|||++|..+.-+++..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiP--kGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCc--CceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 3567788888887664332 111111222233322 2699999999999999999999998877644
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.78 E-value=3.1e-05 Score=81.18 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=64.0
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC-----C-----CeEEEcCCc
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS-----P-----RSVLTTGVG 273 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~-----~-----~~~~~~~~~ 273 (345)
+.| ++|.+..-.-++-.|... ...|+||+||||||||.+++.++... | ..++.....
T Consensus 185 ~~~-liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDP-LIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCc-CcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 344 788865555555555432 11489999999999999999998653 1 112211110
Q ss_pred cCcCCceEEEEeecCeeEeee----ceeeecCCcEEEEcCCCCC------C---HHhHHHHHHHHhCCEEEEeeCC
Q psy1366 274 TTTAGLTVSALRENGEWHLEA----GALVLSDGGVCCIDEFSSI------K---EHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 274 ~~~~glt~~~~~~~~~~~~~~----G~l~la~~gi~~IDEidk~------~---~~~~~~l~eame~~~i~i~k~g 336 (345)
.+.+.. +-.|+|.-.- ..+....++|+|||||+.+ + .+.-+.|..+++.+.+.+--++
T Consensus 252 ----~llaG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgAT 322 (758)
T PRK11034 252 ----SLLAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST 322 (758)
T ss_pred ----HHhccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecC
Confidence 111100 0011221110 0112245789999999976 1 2233457788889888775544
No 177
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.77 E-value=2.9e-05 Score=77.70 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=25.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++||+||||||||++++++++.+...++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~i~ 245 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQRIG 245 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccccc
Confidence 47999999999999999999998765543
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.77 E-value=1.6e-05 Score=83.83 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
-++||+||||||||+|++++++.++..++
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 47999999999999999999998876554
No 179
>KOG0744|consensus
Probab=97.74 E-value=1.1e-05 Score=74.91 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC
Q psy1366 213 LVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV 272 (345)
Q Consensus 213 ~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~ 272 (345)
.++-|...+++.- +. -+.+-+..+--|||.||||||||+|+|++++-+ ++.+.+.
T Consensus 154 ll~Ya~s~l~fse--k~-vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkL--SIR~~~~ 208 (423)
T KOG0744|consen 154 LLSYAASALLFSE--KK-VNTNLITWNRLILLHGPPGTGKTSLCKALAQKL--SIRTNDR 208 (423)
T ss_pred HHHHHHHHHHHHh--cC-CCCceeeeeeEEEEeCCCCCChhHHHHHHHHhh--eeeecCc
Confidence 3344445555533 11 123345566689999999999999999999865 3444443
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=2.1e-05 Score=74.97 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred cccc-chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCC--------c
Q psy1366 207 AIYG-LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGV--------G 273 (345)
Q Consensus 207 ~i~G-~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~--------~ 273 (345)
.|.| |+.+.+.+.-++..| |-.+-+||+||+|+||+++++.+++.+--. ...+|. .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 4566 888888888887766 222345999999999999999998765211 000000 0
Q ss_pred cCcCCceEEEEeecCeeEe----------eeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 TTTAGLTVSALRENGEWHL----------EAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 ~~~~glt~~~~~~~~~~~~----------~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+...+... ..++....+ ...+ ..++..|++|||+++|+...+++|+..||+
T Consensus 75 ~~hpD~~~i-~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEE 136 (329)
T PRK08058 75 GNHPDVHLV-APDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEE 136 (329)
T ss_pred CCCCCEEEe-ccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcC
Confidence 000011100 000000000 0000 335568999999999999999999999996
No 181
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.73 E-value=0.0001 Score=63.43 Aligned_cols=90 Identities=23% Similarity=0.386 Sum_probs=49.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC---CC---eEEEcCC--ccCcCCceE---------EEEee-------cCeeEeee--
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS---PR---SVLTTGV--GTTTAGLTV---------SALRE-------NGEWHLEA-- 294 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~---~~---~~~~~~~--~~~~~glt~---------~~~~~-------~~~~~~~~-- 294 (345)
|++|.|+||+|||++++.+.+.+ +. .+++... .....|+.. ...+. .|.|....
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 79999999999999999988877 22 2333221 111112111 11111 13333321
Q ss_pred ----c--eeee--cCCcEEEEcCCCCC---CHHhHHHHHHHHhCCEE
Q psy1366 295 ----G--ALVL--SDGGVCCIDEFSSI---KEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 295 ----G--~l~l--a~~gi~~IDEidk~---~~~~~~~l~eame~~~i 330 (345)
| +|.. .+..+++||||.+| .+..+.++.++|+...-
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~ 127 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKP 127 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCc
Confidence 1 1222 36689999999986 45778899999986543
No 182
>KOG0730|consensus
Probab=97.72 E-value=5.3e-06 Score=83.29 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=41.4
Q ss_pred cccccchHHHHHHHHHHhCCCcc---cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGR---GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~---~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.+|-|+|.+|+-+-.+..-.... ...-| +...--|||+||||||||+++|++|..+.-++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G--i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFG--ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhc--CCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 46788999998877554432211 01111 122237999999999999999999998876553
No 183
>KOG0743|consensus
Probab=97.70 E-value=1.9e-05 Score=76.41 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=58.0
Q ss_pred CcccccchHHHHHHHHHHhCCCccc---CCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRG---GEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTV 281 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~---~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~ 281 (345)
+..+.=...+|+.|.--|..-.... ..-|. ...---||+||||||||+++-++|..+.-.+|. |..
T Consensus 200 F~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGk--awKRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd---------LeL 268 (457)
T KOG0743|consen 200 FETLAMDPDLKERIIDDLDDFIKGKDFYKRVGK--AWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYD---------LEL 268 (457)
T ss_pred ccccccChhHHHHHHHHHHHHHhcchHHHhcCc--chhccceeeCCCCCCHHHHHHHHHhhcCCceEE---------eee
Confidence 3334445677777765544322111 11111 112368999999999999999999999988874 333
Q ss_pred EEEeecCeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 282 SALRENGEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 282 ~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
+.++++.+ +.-=.+.-.+..|++|.+||..
T Consensus 269 t~v~~n~d--Lr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 269 TEVKLDSD--LRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred ccccCcHH--HHHHHHhCCCCcEEEEeecccc
Confidence 33333322 2222233356789999999864
No 184
>PRK06893 DNA replication initiation factor; Validated
Probab=97.67 E-value=7.5e-05 Score=67.48 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=41.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCCCCCC-
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEFSSIK- 314 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~- 314 (345)
.++|+|+||+|||.|++++++.+ .+..|.+...... .. +..+ .+.+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--~~-------------~~~~~~~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--FS-------------PAVLENLEQQDLVCLDDLQAVIG 105 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--hh-------------HHHHhhcccCCEEEEeChhhhcC
Confidence 68999999999999999998764 2334433211000 00 0000 11234699999999974
Q ss_pred -HHhHHHHHHHH
Q psy1366 315 -EHDRTSIHEAM 325 (345)
Q Consensus 315 -~~~~~~l~eam 325 (345)
++.+..|+..+
T Consensus 106 ~~~~~~~l~~l~ 117 (229)
T PRK06893 106 NEEWELAIFDLF 117 (229)
T ss_pred ChHHHHHHHHHH
Confidence 33344555544
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.66 E-value=2.7e-05 Score=83.30 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=64.5
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----------EEEcCCccCc
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----------VLTTGVGTTT 276 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----------~~~~~~~~~~ 276 (345)
.++|++..-..++-.|..... -|++|+||||+|||.+++.++...... ++....++
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~------------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~-- 239 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTK------------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA-- 239 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCC------------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH--
Confidence 388997666656655654311 389999999999999999998865321 11111000
Q ss_pred CCceEEEEeecCeeEee-eceee---ec-CCcEEEEcCCCCCCH--------HhHHHHHHHHhCCEEEEeeCC
Q psy1366 277 AGLTVSALRENGEWHLE-AGALV---LS-DGGVCCIDEFSSIKE--------HDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 277 ~glt~~~~~~~~~~~~~-~G~l~---la-~~gi~~IDEidk~~~--------~~~~~l~eame~~~i~i~k~g 336 (345)
+.+.. +-.|+|... ...+. .. .+.|+||||++.+.. +..+.|..+|+.+.+.+--++
T Consensus 240 --l~a~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 240 --LIAGA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred --Hhhcc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeC
Confidence 00000 000111000 00011 11 256999999998742 345677788888888775443
No 186
>PHA01747 putative ATP-dependent protease
Probab=97.65 E-value=0.00033 Score=66.44 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=63.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCC---
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIK--- 314 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~--- 314 (345)
.+.|++=.||.|||||.+.+-+.+++|.++ +|...+.+-|..-... + ..|.+-+. -++++||+..+.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~LFyN~~t--~----~~GLVg~~--D~VaFDEVa~i~f~~ 258 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANLVYDAKT--N----ALGLVFLS--NGLIFDEIQTWKDSN 258 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHheEecCC--C----ceeEEeec--cEEEEEccccccCCC
Confidence 447999999999999999999999888777 6655555555543211 1 24555443 368899999976
Q ss_pred -HHhHHHHHHHHhCCEEEEeeC
Q psy1366 315 -EHDRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 315 -~~~~~~l~eame~~~i~i~k~ 335 (345)
.+....|...||++..+-.+.
T Consensus 259 ~kdiv~IMKdYMesG~FsRG~~ 280 (425)
T PHA01747 259 MRAINSTLSTGMENCVWTRGAG 280 (425)
T ss_pred HHHHHHHHHHHhhcceeecCCC
Confidence 345567778899998876554
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00019 Score=60.43 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.+++.|+||+|||+++..+++.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 368999999999999999999976643
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.52 E-value=0.00016 Score=63.09 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc------------CcCCceEEEEeecCeeEe--------eecee-ee
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT------------TTAGLTVSALRENGEWHL--------EAGAL-VL 299 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~------------~~~glt~~~~~~~~~~~~--------~~G~l-~l 299 (345)
.+||+||||+|||++++.+++.+--.-...+.+. ...++.. ...+++.... ..... ..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHR-LEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEE-eccccCcCCHHHHHHHHHHHccCccc
Confidence 5999999999999999999876532100000000 0001100 0000000000 00000 23
Q ss_pred cCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 300 SDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 300 a~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
++..|++|||+++|+++.+++|+..||+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 4567999999999999999999999987
No 189
>KOG0726|consensus
Probab=97.51 E-value=1.2e-05 Score=73.57 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=46.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE-EEcCCccCcCCceEEEEeecCeeEeeeceeeec---CCcEEEEcCCCCCC-
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV-LTTGVGTTTAGLTVSALRENGEWHLEAGALVLS---DGGVCCIDEFSSIK- 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la---~~gi~~IDEidk~~- 314 (345)
-.|+|+|+||||||.||+++|+.....+ .+.| ..|-.....++...+- -.+-.| ...|+||||||.+.
T Consensus 220 KGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG-----seLiQkylGdGpklvR--qlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLAKAVANQTSATFLRVVG-----SELIQKYLGDGPKLVR--ELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred CeeEEeCCCCCchhHHHHHHhcccchhhhhhhh-----HHHHHHHhccchHHHH--HHHHHHHhcCCceEEeehhhhhcc
Confidence 3799999999999999999997543211 1111 0111111111100000 000001 25799999999753
Q ss_pred ----------HHhHHHHHHHHhC
Q psy1366 315 ----------EHDRTSIHEAMEQ 327 (345)
Q Consensus 315 ----------~~~~~~l~eame~ 327 (345)
.+.|..++|.+.|
T Consensus 293 KRyds~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQ 315 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHh
Confidence 3567889999976
No 190
>KOG0740|consensus
Probab=97.51 E-value=2.4e-05 Score=75.93 Aligned_cols=101 Identities=29% Similarity=0.252 Sum_probs=56.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcc-cCCCCCceeee-eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAE-SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~-~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~ 282 (345)
.-+|.|.+.+|+++..+.+=...+ ....|. |.. -.+||.||||+|||.|++++|..+...++-. ++..|+..
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i----SassLtsK 225 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI----SASSLTSK 225 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeec----cHHHhhhh
Confidence 346788888888876554432211 111111 111 2799999999999999999999876554432 12223322
Q ss_pred EEeecCeeEeeeceee---ecCCcEEEEcCCCCC
Q psy1366 283 ALRENGEWHLEAGALV---LSDGGVCCIDEFSSI 313 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~---la~~gi~~IDEidk~ 313 (345)
+.-++ +..+.+ .+. ....+|+||||+|++
T Consensus 226 ~~Ge~-eK~vra-lf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 226 YVGES-EKLVRA-LFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred ccChH-HHHHHH-HHHHHHhcCCeEEEechhHHH
Confidence 22111 110100 011 123689999999874
No 191
>KOG0729|consensus
Probab=97.48 E-value=2.3e-05 Score=71.01 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCc----CCceEEEEeecCeeEeeeceeeec-CCcEEEEcCCCCC--
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT----AGLTVSALRENGEWHLEAGALVLS-DGGVCCIDEFSSI-- 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~----~glt~~~~~~~~~~~~~~G~l~la-~~gi~~IDEidk~-- 313 (345)
.+||+||||||||.++|++++-....+... .+|.. .|-.+..+|+ --.+... ...++|+||+|.+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirv-igselvqkyvgegarmvre-------lf~martkkaciiffdeidaigg 284 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRV-IGSELVQKYVGEGARMVRE-------LFEMARTKKACIIFFDEIDAIGG 284 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEee-hhHHHHHHHhhhhHHHHHH-------HHHHhcccceEEEEeeccccccC
Confidence 799999999999999999997655433211 11111 1111111111 0001111 2478999999864
Q ss_pred ---------CHHhHHHHHHHHhC
Q psy1366 314 ---------KEHDRTSIHEAMEQ 327 (345)
Q Consensus 314 ---------~~~~~~~l~eame~ 327 (345)
+.+.|..++|.+.|
T Consensus 285 arfddg~ggdnevqrtmleli~q 307 (435)
T KOG0729|consen 285 ARFDDGAGGDNEVQRTMLELINQ 307 (435)
T ss_pred ccccCCCCCcHHHHHHHHHHHHh
Confidence 34678899999876
No 192
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.47 E-value=0.00014 Score=57.68 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=50.9
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHH---
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEH--- 316 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~--- 316 (345)
|.|+|+||+|||.+++.+++.+-...... ...... .+. ..-| -|- ....++++|||......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~----~~~~vy---~~~~~~~~w---~gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEP----TKDSVY---TRNPGDKFW---DGY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccC----CCCcEE---eCCCccchh---hcc---CCCcEEEEeecCccccccch
Confidence 67999999999999999776543322000 000000 011 1111 111 13578999999998854
Q ss_pred -hHHHHHHHHhCCEEEEeeCCeE
Q psy1366 317 -DRTSIHEAMEQQTISVAKDKES 338 (345)
Q Consensus 317 -~~~~l~eame~~~i~i~k~gi~ 338 (345)
+...|+..+..-......|++.
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~ 90 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLE 90 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHh
Confidence 5667788887777777666543
No 193
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.46 E-value=0.00045 Score=62.50 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=45.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTS 320 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~ 320 (345)
.-.+.||+|||||...+.+++.+++.+++-...... ....+. .+-.|+. ..|..+|+|||++++.+....
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~---~~~~l~-----ril~G~~--~~GaW~cfdefnrl~~~vLS~ 103 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM---DYQSLS-----RILKGLA--QSGAWLCFDEFNRLSEEVLSV 103 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS----HHHHH-----HHHHHHH--HHT-EEEEETCCCSSHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc---cHHHHH-----HHHHHHh--hcCchhhhhhhhhhhHHHHHH
Confidence 456899999999999999999999987764322111 000000 0011221 236689999999999887766
Q ss_pred HHH
Q psy1366 321 IHE 323 (345)
Q Consensus 321 l~e 323 (345)
+.+
T Consensus 104 i~~ 106 (231)
T PF12774_consen 104 ISQ 106 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.46 E-value=6.9e-05 Score=74.74 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=75.2
Q ss_pred ccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC----------
Q psy1366 203 SICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV---------- 272 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~---------- 272 (345)
..++++.|++.+.+.|.-++..+ |-.+-.||.|+-|||||+++|.+|+.+.=.-...+.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 45678899999999999999977 333579999999999999999999877421101111
Q ss_pred -----ccCcCCceEEEEee---cCeeEeee-ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 273 -----GTTTAGLTVSALRE---NGEWHLEA-GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 273 -----~~~~~glt~~~~~~---~~~~~~~~-G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
......+.++..+. ..+..-+. -+-+.+...|..|||.+.++....++||.-+|+
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE 145 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE 145 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc
Confidence 11111122221110 00000000 011345678999999999999999999999997
No 195
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.00012 Score=66.94 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=49.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eE-EEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCC--CC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SV-LTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEF--SS 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEi--dk 312 (345)
.+++|+|+||||||.|+.+++..+.. .+ |++.. .-...+..+. +.+. .. ...+ .+.+--+++|||| ..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~-~l~~~l~~~~--~~~~-~~-~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP-DVMSRLHESY--DNGQ-SG-EKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH-HHHHHHHHHH--hccc-hH-HHHHHHhcCCCEEEEcCCCCCC
Confidence 48999999999999999999987632 11 11110 0000000000 0000 00 0111 1345679999999 45
Q ss_pred CCHHhHHHHHHHHhCC
Q psy1366 313 IKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 313 ~~~~~~~~l~eame~~ 328 (345)
.++..+..|+++++.+
T Consensus 177 ~s~~~~~~l~~ii~~R 192 (248)
T PRK12377 177 ETKNEQVVLNQIIDRR 192 (248)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6777888999998765
No 196
>PRK06620 hypothetical protein; Validated
Probab=97.41 E-value=0.00039 Score=62.20 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.++|+||||+|||.|++++++...
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC
Confidence 699999999999999999887654
No 197
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.39 E-value=0.00013 Score=81.32 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=26.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.|||+||||||||.|||++|..+.-+++..
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~VPFIsI 1661 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSYVPFITV 1661 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcCCceEEE
Confidence 3799999999999999999999988765443
No 198
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.34 E-value=0.00015 Score=65.88 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+||||+|||.|++++++.+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988754
No 199
>PRK06526 transposase; Provisional
Probab=97.33 E-value=2.4e-05 Score=71.76 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=45.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eE-EEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCC-
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SV-LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIK- 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~- 314 (345)
.|++|+||||||||.|+.+++..+-. .+ |.+.. .-...+..+ ...+. +....-.+..--+++|||++..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~l~~~--~~~~~--~~~~l~~l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVARLAAA--HHAGR--LQAELVKLGRYPLLIVDEVGYIPF 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHHHHHH--HhcCc--HHHHHHHhccCCEEEEcccccCCC
Confidence 58999999999999999999765421 11 11000 000000000 00010 00000112345689999999864
Q ss_pred -HHhHHHHHHHHhC
Q psy1366 315 -EHDRTSIHEAMEQ 327 (345)
Q Consensus 315 -~~~~~~l~eame~ 327 (345)
+..+..|++.++.
T Consensus 174 ~~~~~~~L~~li~~ 187 (254)
T PRK06526 174 EPEAANLFFQLVSS 187 (254)
T ss_pred CHHHHHHHHHHHHH
Confidence 5556678888754
No 200
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.32 E-value=0.00021 Score=66.22 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=45.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC----Cc-cCcCCc----eEEEEeecCeeEeeeceeeecCCcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG----VG-TTTAGL----TVSALRENGEWHLEAGALVLSDGGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~----~~-~~~~gl----t~~~~~~~~~~~~~~G~l~la~~gi~~IDEi 310 (345)
.|+||+||+|+|||.+++..-+.++...|... .. +++..+ .....+..+. .+.| .....-|+|||++
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~gP---~~~k~lv~fiDDl 109 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR-VYGP---PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE-EEEE---ESSSEEEEEEETT
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CCCC---CCCcEEEEEeccc
Confidence 59999999999999999887766655332211 11 111100 0011111221 1222 1123458999999
Q ss_pred CCCCHHh------HHHHHHHHhCCE
Q psy1366 311 SSIKEHD------RTSIHEAMEQQT 329 (345)
Q Consensus 311 dk~~~~~------~~~l~eame~~~ 329 (345)
+.-.++. ...|.+.|+++-
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g 134 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGG 134 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSE
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcC
Confidence 8765432 356677777754
No 201
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.32 E-value=0.00014 Score=70.90 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=34.3
Q ss_pred cCc-ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 204 ICP-AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 204 ~~p-~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..| .++|.+.....+...+..+... ....+++++|+||+|||.+++.+.+.+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344 4667766555555555333110 011379999999999999999998765
No 202
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=6.6e-05 Score=69.50 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=49.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC---Ce-EEEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCC--CC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP---RS-VLTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEF--SS 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~---~~-~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEi--dk 312 (345)
..++|+|+||+|||.|+.++++.+- .+ +|++... -...+..+. .+..... ....+ .+.+..+++|||+ ++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~-ll~~i~~~~-~~~~~~~-~~~~~~~l~~~dlLviDDlg~e~ 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ-LLNRIKSTY-KSSGKED-ENEIIRSLVNADLLILDDLGAER 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH-HHHHHHHHH-hcccccc-HHHHHHHhcCCCEEEEecccCCC
Confidence 4699999999999999999988652 22 2322100 000000000 0000000 00111 1345579999999 56
Q ss_pred CCHHhHHHHHHHHhCC
Q psy1366 313 IKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 313 ~~~~~~~~l~eame~~ 328 (345)
.++..+..|+++++.+
T Consensus 192 ~t~~~~~~l~~iin~r 207 (268)
T PRK08116 192 DTEWAREKVYNIIDSR 207 (268)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777888899988754
No 203
>KOG0651|consensus
Probab=97.30 E-value=9.2e-05 Score=68.51 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=48.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC---ccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCC----
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV---GTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSS---- 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~---~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk---- 312 (345)
.-+||+||||||||.+++++++-..-....... -+...|-.+...|+. | -.|--. -..++|+||||.
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem--f-~yA~~~---~pciifmdeiDAigGR 240 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM--F-RYAREV---IPCIIFMDEIDAIGGR 240 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH--H-HHHhhh---CceEEeehhhhhhccE
Confidence 479999999999999999999987754322211 111222222222221 0 001000 148999999985
Q ss_pred -------CCHHhHHHHHHHHhC
Q psy1366 313 -------IKEHDRTSIHEAMEQ 327 (345)
Q Consensus 313 -------~~~~~~~~l~eame~ 327 (345)
.+...|..|.|.+.|
T Consensus 241 r~se~Ts~dreiqrTLMeLlnq 262 (388)
T KOG0651|consen 241 RFSEGTSSDREIQRTLMELLNQ 262 (388)
T ss_pred EeccccchhHHHHHHHHHHHHh
Confidence 344566777777764
No 204
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.29 E-value=0.00037 Score=56.62 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=47.2
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|..+|...+|||..++..++-++.+-..... -+..+-+.|-|+||||||.+++.+|+.+
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 456777888899999999988888876532211 1333677899999999999999999864
No 205
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.00045 Score=61.59 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=50.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe--------EEEcCCccCcCC-ceEEEEeecCe--eEee--e---cee--ee-c
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS--------VLTTGVGTTTAG-LTVSALRENGE--WHLE--A---GAL--VL-S 300 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~--------~~~~~~~~~~~g-lt~~~~~~~~~--~~~~--~---G~l--~l-a 300 (345)
.|.|++||||+|||+++|-+++++.-. +-+....+..+| +.+--..+-+. -.+. | |.+ +. -
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 699999999999999999999876432 211222222221 10000000000 0000 0 111 01 1
Q ss_pred CCcEEEEcCCCCCCHHhHHHHHHHHhCCEE
Q psy1366 301 DGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 301 ~~gi~~IDEidk~~~~~~~~l~eame~~~i 330 (345)
..-|+.+|||..+.+. .++++|++-|.=
T Consensus 218 ~PEViIvDEIGt~~d~--~A~~ta~~~GVk 245 (308)
T COG3854 218 SPEVIIVDEIGTEEDA--LAILTALHAGVK 245 (308)
T ss_pred CCcEEEEeccccHHHH--HHHHHHHhcCcE
Confidence 2578999999997664 689999988743
No 206
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.26 E-value=0.001 Score=67.65 Aligned_cols=132 Identities=26% Similarity=0.269 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHhcc--CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHH
Q psy1366 179 RAEVTQFWEDHKYDGLAARNHILASI--CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEIL 256 (345)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~s~--~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~ 256 (345)
.+.+.+-.+.+..+.|. +.|++|+ -|+-+. +..|..++.=|+==+. .|.|++=.||-|||||.+-
T Consensus 167 l~~~~~~R~~FT~dEWi--d~LlrSiG~eP~~~~-~r~K~~~L~RliPlVE----------~N~Nl~ELgPrgTGKS~~y 233 (675)
T TIGR02653 167 MNEVFEGRRHFTSDEWI--DVLLRSVGMEPTNLE-RRTKWHLLTRLIPLVE----------NNYNLCELGPRGTGKSHVY 233 (675)
T ss_pred HHHHHHHHHhCCHHHHH--HHHHHhcCCCccccC-HHHHHHHHHhhhhhcc----------cccceEEECCCCCCcceee
Confidence 44554444555567774 7788886 554443 4666666555553333 3369999999999999997
Q ss_pred HHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCC---HHhHHHHHHHHhCCEEEEe
Q psy1366 257 KFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIK---EHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 257 ~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~---~~~~~~l~eame~~~i~i~ 333 (345)
+ +++|.+..++|...+.+-|+.-... + ..|.+-+ --++++||+..++ ++..+.|-..||+|+.+--
T Consensus 234 ~---eiSp~~~liSGG~~T~A~LFyn~~~--~----~~GlVg~--~D~VaFDEva~i~f~d~d~v~imK~YM~sG~FsRG 302 (675)
T TIGR02653 234 K---ECSPNSILMSGGQTTVANLFYNMST--R----QIGLVGM--WDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFARG 302 (675)
T ss_pred e---ccCCceEEEECCccchhHeeEEcCC--C----ceeEEee--ccEEEEeeccccccCCHHHHHHHHHHhhcCccccc
Confidence 7 6778999999887777777664322 1 2444432 3478999998754 4445677788999887654
Q ss_pred e
Q psy1366 334 K 334 (345)
Q Consensus 334 k 334 (345)
+
T Consensus 303 ~ 303 (675)
T TIGR02653 303 K 303 (675)
T ss_pred c
Confidence 3
No 207
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.22 E-value=0.00037 Score=70.18 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=34.8
Q ss_pred eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeC
Q psy1366 294 AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 294 ~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~ 335 (345)
.|+|..|++|++=+=|+-|.+.+....|+.|-+++.|...++
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~ 289 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEG 289 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCC
Confidence 678889998887777999999999999999999998855443
No 208
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.19 E-value=0.0001 Score=76.41 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=25.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
++||+||||+|||+++++++..++.+++.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~ 215 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFT 215 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999999988766543
No 209
>KOG2170|consensus
Probab=97.19 E-value=0.00017 Score=66.55 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=80.1
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTA 277 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~ 277 (345)
+.|-..+...++||..+|..+.-++.+-..... -+...-+-|-|.|||||+..++.+++.+ |..|..|.-+
T Consensus 74 ~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~----~~~Gl~S~~V 144 (344)
T KOG2170|consen 74 DGLEKDLARALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENL----YRGGLRSPFV 144 (344)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHH----HhccccchhH
Confidence 556777888899999999999998887533221 2334678889999999999999999865 3344433332
Q ss_pred CceEEEE-eec----CeeEe-----eeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHh
Q psy1366 278 GLTVSAL-REN----GEWHL-----EAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 278 glt~~~~-~~~----~~~~~-----~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame 326 (345)
-...+.. --. ..|.. ..|.+...+..+.++||.|||++...++|.-.++
T Consensus 145 ~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 145 HHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 2222110 000 00100 1233344567899999999999999999988887
No 210
>KOG0990|consensus
Probab=97.17 E-value=8e-05 Score=69.14 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec-------CeeEeeec--eee-ecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN-------GEWHLEAG--ALV-LSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~-------~~~~~~~G--~l~-la~~gi~~IDE 309 (345)
.|+|++||||||||....+.+..+..+ .+.++-...|.++..|+- ..|...-+ ... -+.-..+.+||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 399999999999999888888776543 111111112222222210 11111000 001 12245789999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~i 332 (345)
.|.|..+.|++|..+.|+-+...
T Consensus 140 ADaMT~~AQnALRRviek~t~n~ 162 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEKYTANT 162 (360)
T ss_pred hhHhhHHHHHHHHHHHHHhccce
Confidence 99999999999999998865443
No 211
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.00023 Score=67.85 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=50.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCC--------ccCcCCceEEE------------Eeec-CeeEeee
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGV--------GTTTAGLTVSA------------LREN-GEWHLEA 294 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~--------~~~~~glt~~~------------~~~~-~~~~~~~ 294 (345)
+.+||.||+|+||+++++.+++.+--. ...+|. ..+-..+..-. +|+- ......
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~- 101 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT- 101 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc-
Confidence 459999999999999999999865310 000000 00000111000 0000 000000
Q ss_pred ceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 295 GALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 295 G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
-..+..-|++|||.|+|+....++|+..||+
T Consensus 102 --~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE 132 (328)
T PRK05707 102 --AQLGGRKVVLIEPAEAMNRNAANALLKSLEE 132 (328)
T ss_pred --cccCCCeEEEECChhhCCHHHHHHHHHHHhC
Confidence 0234567999999999999999999999998
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=5.3e-05 Score=61.62 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=52.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCC--------C-eEEEcCCcc-CcCCceEEEEeecCee--E-eee----cee---e
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSP--------R-SVLTTGVGT-TTAGLTVSALRENGEW--H-LEA----GAL---V 298 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~--------~-~~~~~~~~~-~~~glt~~~~~~~~~~--~-~~~----G~l---~ 298 (345)
.-+++++|+||+|||.+++.+++... . .++...... +..++.......-+.. . ... ..+ .
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 34899999999999999999998752 2 222222111 1111100000000000 0 000 000 0
Q ss_pred ecC-CcEEEEcCCCCC-CHHhHHHHHHHHhCCEEEEeeCC
Q psy1366 299 LSD-GGVCCIDEFSSI-KEHDRTSIHEAMEQQTISVAKDK 336 (345)
Q Consensus 299 la~-~gi~~IDEidk~-~~~~~~~l~eame~~~i~i~k~g 336 (345)
... ..+++|||+|.+ +......|...+++..+++--.|
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEE
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 111 248999999999 98888888888887777764444
No 213
>PRK08181 transposase; Validated
Probab=97.16 E-value=3.3e-05 Score=71.42 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=45.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---e-EEEcCCccCcCCceEEEE--eecCeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---S-VLTTGVGTTTAGLTVSAL--RENGEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~-~~~~~~~~~~~glt~~~~--~~~~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
-|++|+||||||||.|+.+++..+-. . +|.+. ..|..... ...+. +..-.-.+..--+++|||++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~-----~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT-----TDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH-----HHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEeccccc
Confidence 38999999999999999999865421 1 22211 01100000 00000 0000001234468999999886
Q ss_pred CH--HhHHHHHHHHhC
Q psy1366 314 KE--HDRTSIHEAMEQ 327 (345)
Q Consensus 314 ~~--~~~~~l~eame~ 327 (345)
+. ..+..|+++++.
T Consensus 180 ~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 180 TKDQAETSVLFELISA 195 (269)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 44 445678888864
No 214
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.12 E-value=0.00063 Score=71.33 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeece-eeeCCCCChHHHHHHHHHhhC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHL-LLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~i-Ll~G~pGtGKs~l~~~i~~~~ 263 (345)
+.+.|.|.-...|..+|...... .+.-++ +++|+||||||.+++++.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35667765555555554433110 011255 599999999999999997654
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=97.07 E-value=0.0012 Score=60.80 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=44.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC---CeE-EEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC--
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP---RSV-LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI-- 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~---~~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~-- 313 (345)
-+++|+||||+|||.|+.+++..+. ..+ |.+.. .-...+..+ +..+.+....-. ......+++|||++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~-~l~~~l~~a--~~~~~~~~~~~~-~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA-DLLLQLSTA--QRQGRYKTTLQR-GVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH-HHHHHHHHH--HHCCcHHHHHHH-HhcCCCEEEEcccccCCC
Confidence 4899999999999999999976532 122 22110 000000000 000100000000 0223468999999974
Q ss_pred CHHhHHHHHHHHhC
Q psy1366 314 KEHDRTSIHEAMEQ 327 (345)
Q Consensus 314 ~~~~~~~l~eame~ 327 (345)
+......|++++++
T Consensus 179 ~~~~~~~lf~li~~ 192 (259)
T PRK09183 179 SQEEANLFFQVIAK 192 (259)
T ss_pred ChHHHHHHHHHHHH
Confidence 44555578888843
No 216
>KOG1969|consensus
Probab=97.05 E-value=0.00095 Score=68.17 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=50.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeec------CeeEeeeceeeecCCcEEEEcCCCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALREN------GEWHLEAGALVLSDGGVCCIDEFSSIK 314 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~------~~~~~~~G~l~la~~gi~~IDEidk~~ 314 (345)
-+||.||||.|||+||+.+|+.++-++..... |.. =++.++++- .+-++.|+ ...-.++|||||-.+
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINA-SDe--Rt~~~v~~kI~~avq~~s~l~ad----srP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA-SDE--RTAPMVKEKIENAVQNHSVLDAD----SRPVCLVIDEIDGAP 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecc-ccc--ccHHHHHHHHHHHHhhccccccC----CCcceEEEecccCCc
Confidence 58899999999999999999999876643211 111 011111110 01111111 234578899999999
Q ss_pred HHhHHHHHHHHh
Q psy1366 315 EHDRTSIHEAME 326 (345)
Q Consensus 315 ~~~~~~l~eame 326 (345)
....+.|+..++
T Consensus 401 ~~~Vdvilslv~ 412 (877)
T KOG1969|consen 401 RAAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHHHH
Confidence 887888887776
No 217
>PRK08727 hypothetical protein; Validated
Probab=96.99 E-value=0.0015 Score=59.18 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=43.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCCCCCC-
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEFSSIK- 314 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~- 314 (345)
.++|+|++|+|||.|+++++..+. +..|.+... +. ..+ ...+ .+.+--+++||||+.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-----~~-------~~~---~~~~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-----AA-------GRL---RDALEALEGRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH-----hh-------hhH---HHHHHHHhcCCEEEEeCcccccC
Confidence 599999999999999999876542 223332110 00 000 0011 11223589999999985
Q ss_pred -HHhHHHHHHHHhC
Q psy1366 315 -EHDRTSIHEAMEQ 327 (345)
Q Consensus 315 -~~~~~~l~eame~ 327 (345)
+..+..++..++.
T Consensus 108 ~~~~~~~lf~l~n~ 121 (233)
T PRK08727 108 QREDEVALFDFHNR 121 (233)
T ss_pred ChHHHHHHHHHHHH
Confidence 4455677777754
No 218
>PRK04296 thymidine kinase; Provisional
Probab=96.96 E-value=0.0017 Score=56.96 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeE
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKES 338 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~ 338 (345)
--+++|||++.++.++...|.+.+.+..+++--.|..
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3689999999998775566777766555555444443
No 219
>PRK09087 hypothetical protein; Validated
Probab=96.93 E-value=0.00094 Score=60.24 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=40.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTS 320 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~ 320 (345)
.++|+|++|+|||.|++.+++.. ...|.+.. .++ ...+.....+.++|||++.++. ++.+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~-----~~~-------------~~~~~~~~~~~l~iDDi~~~~~-~~~~ 105 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPN-----EIG-------------SDAANAAAEGPVLIEDIDAGGF-DETG 105 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCEEecHH-----Hcc-------------hHHHHhhhcCeEEEECCCCCCC-CHHH
Confidence 59999999999999999888654 22333321 000 0011111236899999998753 3455
Q ss_pred HHHHH
Q psy1366 321 IHEAM 325 (345)
Q Consensus 321 l~eam 325 (345)
|++.+
T Consensus 106 lf~l~ 110 (226)
T PRK09087 106 LFHLI 110 (226)
T ss_pred HHHHH
Confidence 55444
No 220
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.81 E-value=0.0055 Score=61.87 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=50.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC-------cCCce---EE----EEeec--CeeEeeecee-------
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT-------TAGLT---VS----ALREN--GEWHLEAGAL------- 297 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~-------~~glt---~~----~~~~~--~~~~~~~G~l------- 297 (345)
-+||.||||+|||+.++.+++.+...+........ ..+.. .. ..+-. .+|.+.+...
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 68899999999999999999998765543322211 00000 00 00000 1222221111
Q ss_pred --eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 298 --VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 298 --~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
...+.-|++|||+-.+-..+...++++|++
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 123567999999988655555778877764
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0015 Score=61.89 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC-CeEEEcCC--------ccCcCCceE
Q psy1366 211 LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP-RSVLTTGV--------GTTTAGLTV 281 (345)
Q Consensus 211 ~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~-~~~~~~~~--------~~~~~glt~ 281 (345)
++.++..+.-++..| |-.+-+||.|++|+||+.++.++++.+- ......+. ..+-..+..
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 455666666666665 2223499999999999999999987542 10000000 000001100
Q ss_pred E---EEeec----CeeEee-----ecee----eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 282 S---ALREN----GEWHLE-----AGAL----VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 282 ~---~~~~~----~~~~~~-----~G~l----~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
- -.+.+ ....++ ...+ ..+..-|++||+.|+|+....++|+..||+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 139 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE 139 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC
Confidence 0 00000 000000 0000 123457999999999999999999999997
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.0016 Score=61.87 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCC--------ccCcCCc
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGV--------GTTTAGL 279 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~--------~~~~~gl 279 (345)
......+.-++..| |-.+-+||.||+|+||+.+++.+++.+- .....+|. ..+...+
T Consensus 8 ~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 8 QPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred HHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 34444555555555 3335688999999999999999998652 11001110 0011111
Q ss_pred eEEEEeecCeeEe---e------eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 280 TVSALRENGEWHL---E------AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 280 t~~~~~~~~~~~~---~------~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..-.-.++....+ + .-.-..+...|++||+.|+|+....++|+..||+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE 133 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE 133 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC
Confidence 1100000000000 0 0000123457999999999999999999999997
No 223
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.75 E-value=0.0057 Score=67.67 Aligned_cols=97 Identities=14% Similarity=0.257 Sum_probs=72.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC--ccCcCCceE-EEEeecCeeEeeeceeeec--CCcEEEEcCCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV--GTTTAGLTV-SALRENGEWHLEAGALVLS--DGGVCCIDEFSSIK 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~--~~~~~glt~-~~~~~~~~~~~~~G~l~la--~~gi~~IDEidk~~ 314 (345)
.++|+-||+.+|||.+..++|+..++-+....+ .+.....-. .+.-++|...++.|.||-| .|-.+.+||++-++
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 699999999999999999999999875543322 222222222 3334567788999999865 57889999999999
Q ss_pred HHhHHHHHHHHhC-CEEEEeeCC
Q psy1366 315 EHDRTSIHEAMEQ-QTISVAKDK 336 (345)
Q Consensus 315 ~~~~~~l~eame~-~~i~i~k~g 336 (345)
.+...+|...+++ +++-|....
T Consensus 969 TDVLEaLNRLLDDNRelfIPETq 991 (4600)
T COG5271 969 TDVLEALNRLLDDNRELFIPETQ 991 (4600)
T ss_pred HHHHHHHHHhhccccceecCCcc
Confidence 9999999999965 556555443
No 224
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.00016 Score=66.41 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=46.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCCceEEEEeec-CeeEeeeceee-ecCCcEEEEcCCCCC--
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAGLTVSALREN-GEWHLEAGALV-LSDGGVCCIDEFSSI-- 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~glt~~~~~~~-~~~~~~~G~l~-la~~gi~~IDEidk~-- 313 (345)
+++|+|+||+|||.|+-+++..+-+ +++.. +.+.+... ++.. .+-..+.-..- +.+--+++|||+...
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~----~~~el~~~-Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI----TAPDLLSK-LKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE----EHHHHHHH-HHHHHhcCchHHHHHHHhhcCCEEEEecccCccC
Confidence 9999999999999999999875532 22111 00010000 0000 00000111112 345679999999984
Q ss_pred CHHhHHHHHHHHhCC
Q psy1366 314 KEHDRTSIHEAMEQQ 328 (345)
Q Consensus 314 ~~~~~~~l~eame~~ 328 (345)
++..++.+++++.+.
T Consensus 182 ~~~~~~~~~q~I~~r 196 (254)
T COG1484 182 SQEEADLLFQLISRR 196 (254)
T ss_pred CHHHHHHHHHHHHHH
Confidence 444567777777654
No 225
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.73 E-value=0.0014 Score=67.56 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=35.9
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.-++.||+.....+.-.+....... . .+ --++|+||||+|||++++.+++.+..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~-~-----~~-~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLEN-A-----PK-RILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccccc-C-----CC-cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34467888665555555544331110 0 00 13899999999999999999988764
No 226
>KOG3347|consensus
Probab=96.72 E-value=0.0014 Score=54.66 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=28.6
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
|-..|||+.|-||||||+++.++|+.+.-..+..|
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 44579999999999999999999998875544443
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.00033 Score=63.91 Aligned_cols=82 Identities=27% Similarity=0.375 Sum_probs=45.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCCceEEEEee---cCeeEeeecee-eecCCcEEEEcCCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAGLTVSALRE---NGEWHLEAGAL-VLSDGGVCCIDEFSSI 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~glt~~~~~~---~~~~~~~~G~l-~la~~gi~~IDEidk~ 313 (345)
+++|.|+||||||.|+.+++..+.. .+... +...+... .++ ......+ -.+ .+..--+++|||++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i----t~~~l~~~-l~~~~~~~~~~~~-~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLII----TVADIMSA-MKDTFSNSETSEE-QLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE----EHHHHHHH-HHHHHhhccccHH-HHHHHhccCCEEEEeCCCCC
Confidence 8999999999999999999987632 22111 01111000 000 0000000 000 1234568999999886
Q ss_pred CHH--hHHHHHHHHhCC
Q psy1366 314 KEH--DRTSIHEAMEQQ 328 (345)
Q Consensus 314 ~~~--~~~~l~eame~~ 328 (345)
... .+..|+++++.+
T Consensus 175 ~~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 175 TESRYEKVIINQIVDRR 191 (244)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 543 355788888754
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.0017 Score=61.95 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=52.4
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCC--------ccCcCCceEEE------------Eeec-CeeE
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGV--------GTTTAGLTVSA------------LREN-GEWH 291 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~--------~~~~~glt~~~------------~~~~-~~~~ 291 (345)
|..+-+||.||+|+||+++++++++.+- ..-..+|. ..+-..+..-. +|+- ....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4446788999999999999999988651 10001110 00001111000 0000 0000
Q ss_pred eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 292 LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 292 ~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
..| ..+...|++||+.|+|+....++|+..||+
T Consensus 102 ~~~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (334)
T PRK07993 102 EHA---RLGGAKVVWLPDAALLTDAAANALLKTLEE 134 (334)
T ss_pred hcc---ccCCceEEEEcchHhhCHHHHHHHHHHhcC
Confidence 011 234567999999999999999999999997
No 229
>PRK05642 DNA replication initiation factor; Validated
Probab=96.63 E-value=0.0033 Score=56.94 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+++|+|++|+|||.|++++++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999764
No 230
>PHA02774 E1; Provisional
Probab=96.63 E-value=0.0091 Score=60.35 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=50.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC-CHHhHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI-KEHDRT 319 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~-~~~~~~ 319 (345)
.++|+||||||||.++-++.+.+...+..- +-....|-+. .+++.-+++|||+..- ..-...
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~f-------------vN~~s~FwLq----pl~d~ki~vlDD~t~~~w~y~d~ 498 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-------------VNSKSHFWLQ----PLADAKIALLDDATHPCWDYIDT 498 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------------EECccccccc----hhccCCEEEEecCcchHHHHHHH
Confidence 899999999999999999999875322110 0001122222 3456679999999332 122344
Q ss_pred HHHHHHhCCEEEEee
Q psy1366 320 SIHEAMEQQTISVAK 334 (345)
Q Consensus 320 ~l~eame~~~i~i~k 334 (345)
.|..+|+.+.|+|.+
T Consensus 499 ~Lrn~LdG~~v~lD~ 513 (613)
T PHA02774 499 YLRNALDGNPVSIDC 513 (613)
T ss_pred HHHHHcCCCcceeee
Confidence 788888888777754
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.0012 Score=62.75 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 300 SDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 300 a~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
+...|++||+++.|++..+++|+..||+-
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 45689999999999999999999999974
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.58 E-value=0.0015 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.6
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
|++.|+||+|||++++.+++.+.-.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 78999999999999999999865443
No 233
>PF13173 AAA_14: AAA domain
Probab=96.57 E-value=0.0016 Score=53.19 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=45.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHD 317 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~ 317 (345)
-++|.|+.|+|||++++.+++... ..+|.+-.......+.. .+.-++..+. ......+++|||+++++. .
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~i~iDEiq~~~~-~ 76 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD---PDLLEYFLEL---IKPGKKYIFIDEIQYLPD-W 76 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh---hhhHHHHHHh---hccCCcEEEEehhhhhcc-H
Confidence 689999999999999988886543 33444321111100000 0000000000 011467899999999985 3
Q ss_pred HHHHHHHHhCC
Q psy1366 318 RTSIHEAMEQQ 328 (345)
Q Consensus 318 ~~~l~eame~~ 328 (345)
...+-...+..
T Consensus 77 ~~~lk~l~d~~ 87 (128)
T PF13173_consen 77 EDALKFLVDNG 87 (128)
T ss_pred HHHHHHHHHhc
Confidence 45565555554
No 234
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.56 E-value=0.0039 Score=54.92 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=46.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccCc-------CCceEEEEee-cCeeEe--eeceeeecCCcEEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTTT-------AGLTVSALRE-NGEWHL--EAGALVLSDGGVCCI 307 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~~-------~glt~~~~~~-~~~~~~--~~G~l~la~~gi~~I 307 (345)
-.++.|+||||||++++.+.+.+. ..+........+ .|..+.-+.. -..+.. ..+.......-+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 577789999999999998876542 233322221111 1222211100 000000 001111344569999
Q ss_pred cCCCCCCHHhHHHHHHHHhC
Q psy1366 308 DEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 308 DEidk~~~~~~~~l~eame~ 327 (345)
||...++......|+++.+.
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999999998899998876
No 235
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.51 E-value=0.0034 Score=62.33 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|+||+|||.|+++++..+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999765
No 236
>PRK14532 adenylate kinase; Provisional
Probab=96.49 E-value=0.003 Score=54.97 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=26.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
+|+|+|+||+|||++++.+++..+.....+|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 6999999999999999999998876555443
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0038 Score=65.11 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=63.6
Q ss_pred ccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC----------CeEEEcCC
Q psy1366 203 SICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP----------RSVLTTGV 272 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~----------~~~~~~~~ 272 (345)
-+.| +.|.+.-..-++-.|....+ -|-+|+|+||+|||.++..+|.-.- ..++.-..
T Consensus 168 klDP-vIGRd~EI~r~iqIL~RR~K------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDP-VIGRDEEIRRTIQILSRRTK------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCC-CcChHHHHHHHHHHHhccCC------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 4666 67775555545555543311 3889999999999999998886432 12232222
Q ss_pred ccCcCCceEEEEeecCeeEee----eceeeecCCcEEEEcCCCCC---------CHHhHHHHHHHHhCCEEEEe
Q psy1366 273 GTTTAGLTVSALRENGEWHLE----AGALVLSDGGVCCIDEFSSI---------KEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 273 ~~~~~glt~~~~~~~~~~~~~----~G~l~la~~gi~~IDEidk~---------~~~~~~~l~eame~~~i~i~ 333 (345)
++-.+|-. .| |+|--. -..+..+.+-|+||||++.+ .-+.-+.|--+|..|++..-
T Consensus 235 g~LvAGak---yR--GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~I 303 (786)
T COG0542 235 GSLVAGAK---YR--GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCI 303 (786)
T ss_pred HHHhcccc---cc--CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEE
Confidence 22222211 11 111100 00122344679999999853 13345677788888887653
No 238
>PRK13947 shikimate kinase; Provisional
Probab=96.43 E-value=0.0032 Score=53.72 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
||+|+|+||+|||++++.+++.++..++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 7999999999999999999999887666544
No 239
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.41 E-value=0.0041 Score=56.30 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=33.1
Q ss_pred ccccchHHHHHHH---HHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 207 AIYGLYLVKLCLA---VVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 207 ~i~G~~~vk~~i~---l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|.|.-|..+. .+...|-+ -.|+||+|+.|||||+++|++...+
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~p-----------annvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLP-----------ANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCC-----------CcceEEecCCCCCHHHHHHHHHHHH
Confidence 4567766666554 34444422 2499999999999999999998754
No 240
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.0032 Score=59.68 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-e--EEEcCC--------ccCcCCce
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR-S--VLTTGV--------GTTTAGLT 280 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-~--~~~~~~--------~~~~~glt 280 (345)
.....-+.-++..| |-.+-+||.||.|+||+.+++.+++.+-= . ...+|. ..+-..+.
T Consensus 9 ~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 9 VPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 34444455555555 33356999999999999999999986521 0 000110 00111111
Q ss_pred EE-EEeecCeeE---ee------eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 281 VS-ALRENGEWH---LE------AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 281 ~~-~~~~~~~~~---~~------~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.- -..++..-. +. ...-..+..-|++||+.|+|+....++|+..+|+
T Consensus 78 ~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE 134 (319)
T ss_pred EEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC
Confidence 10 000000000 00 0001223457999999999999999999999997
No 241
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.40 E-value=0.011 Score=53.07 Aligned_cols=81 Identities=19% Similarity=0.078 Sum_probs=42.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe--ecCeeEeeeceeee---cCCcEEEEcCCCCCCHH
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR--ENGEWHLEAGALVL---SDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~--~~~~~~~~~G~l~l---a~~gi~~IDEidk~~~~ 316 (345)
+++.|.||+|||++++.+.... .+.+.... +..-.+....+ +...+.++...... .....++|||+..++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISP-TIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--cccccccc-cceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4788999999999999988873 01000000 00000000000 01112222222221 23679999999999987
Q ss_pred hHHHHHHHH
Q psy1366 317 DRTSIHEAM 325 (345)
Q Consensus 317 ~~~~l~eam 325 (345)
....|+...
T Consensus 78 ~l~~l~~~~ 86 (234)
T PF01443_consen 78 YLLLLLSLS 86 (234)
T ss_pred HHHHHHhhc
Confidence 555544433
No 242
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.38 E-value=0.0025 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.5
Q ss_pred eeeeCCCCChHHHHHHHHHhhCC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
|+++|+||+|||++++.+++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998877
No 243
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.33 E-value=0.0012 Score=63.48 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=52.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC------CCeEEEcCCccCcCCc----eEEEEee-cCeeEeeecee---------eec
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS------PRSVLTTGVGTTTAGL----TVSALRE-NGEWHLEAGAL---------VLS 300 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~------~~~~~~~~~~~~~~gl----t~~~~~~-~~~~~~~~G~l---------~la 300 (345)
-+++.|.||||||.||-.+++.+ ...++.++......-+ ....... .......+..+ ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 57899999999999999888876 2345555543221111 0000000 00001111111 223
Q ss_pred CCcEEEEcCCCCCCHH--------hHHHHHHHHhCCEEEE
Q psy1366 301 DGGVCCIDEFSSIKEH--------DRTSIHEAMEQQTISV 332 (345)
Q Consensus 301 ~~gi~~IDEidk~~~~--------~~~~l~eame~~~i~i 332 (345)
+-.++++||.+.+... ..+.|.+.|....+.|
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v 122 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVV 122 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEE
Confidence 4689999999999882 2467888887755544
No 244
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.31 E-value=0.004 Score=55.85 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=44.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----C--CeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----P--RSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIK 314 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~--~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~ 314 (345)
.++|+|++|+|||.|+++++..+ | +.+|.+...-.. .+ ....++ +.+ ..-.-.+.+--+++||+++.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~-~~~~~~-~~~--~~~~~~~~~~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EF-ADALRD-GEI--EEFKDRLRSADLLIIDDIQFLA 110 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HH-HHHHHT-TSH--HHHHHHHCTSSEEEEETGGGGT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HH-HHHHHc-ccc--hhhhhhhhcCCEEEEecchhhc
Confidence 68999999999999999998653 2 233443210000 00 000000 000 0000012345799999999987
Q ss_pred HHh--HHHHHHHHh
Q psy1366 315 EHD--RTSIHEAME 326 (345)
Q Consensus 315 ~~~--~~~l~eame 326 (345)
... |..|...++
T Consensus 111 ~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 111 GKQRTQEELFHLFN 124 (219)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 764 667766554
No 245
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.31 E-value=0.0034 Score=59.97 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=36.9
Q ss_pred ccCcccccchHHHHHHHHH--HhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 203 SICPAIYGLYLVKLCLAVV--LAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i~l~--l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..+-.++||..+++|.-+. ++.. +. ...-.+||.||||||||.|+-++++.++.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~--~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKE--GK-------IAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHT--T---------TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred eccccccChHHHHHHHHHHHHHHhc--cc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3456889999998876444 4422 11 11138999999999999999999998863
No 246
>PRK08118 topology modulation protein; Reviewed
Probab=96.25 E-value=0.0041 Score=53.35 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+++|+||+|||+|++.+++.+.-.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 5899999999999999999998776543
No 247
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.24 E-value=0.0075 Score=58.02 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=34.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+.+.|.+.-...|...+...... ....+++++||||||||++++++.+.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35788877666666665421100 011389999999999999999998654
No 248
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.011 Score=52.02 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=46.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCc--CCceEEEE-eecC--eeEee---eceeeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTT--AGLTVSAL-RENG--EWHLE---AGALVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~--~glt~~~~-~~~~--~~~~~---~G~l~la~~gi~~ID 308 (345)
-+++.||+|+|||++++++....+. .+++....... .+....+. ++-+ ...+. ..++. .+..++++|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr-~~pd~ii~g 81 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR-QDPDVILVG 81 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc-CCcCEEEEc
Confidence 5899999999999999988776652 22322221100 00000011 1101 00000 11122 357899999
Q ss_pred CCCCCCHHhHHHHHHHHhCCEE
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~~i 330 (345)
|+. +++....++++.+.+..
T Consensus 82 Eir--d~e~~~~~l~~a~~G~~ 101 (198)
T cd01131 82 EMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred CCC--CHHHHHHHHHHHHcCCE
Confidence 995 34445566677776643
No 249
>PRK03839 putative kinase; Provisional
Probab=96.24 E-value=0.0043 Score=53.56 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=26.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
.|+|+|.||+|||++++.+++.+...+...+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 5899999999999999999998876554433
No 250
>PF13245 AAA_19: Part of AAA domain
Probab=96.23 E-value=0.0072 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=17.7
Q ss_pred ceeeeCCCCChHH-HHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKS-EILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs-~l~~~i~~~~ 263 (345)
-+++.|+|||||| ++++.++.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555999999999 6667776665
No 251
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.23 E-value=0.031 Score=57.43 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=32.9
Q ss_pred hccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 202 ASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 202 ~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.++|.....+.-|.|+..++... ..++.|.||||||+++..+...
T Consensus 138 ~~~~~~~~~~~~Qk~A~~~al~~~---------------~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 138 ENLFPLLNEQNWQKVAVALALKSN---------------FSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred HHhhccccccHHHHHHHHHHhhCC---------------eEEEEcCCCCCHHHHHHHHHHH
Confidence 334443323356677888888765 7999999999999987776544
No 252
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0068 Score=62.46 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=62.9
Q ss_pred eceeeeC----CCCChHHHHHHHHHhhCCC--------------------eEEEcCCccCcCCceEEEEeec--C-----
Q psy1366 240 SHLLLVG----DPGTGKSEILKFAKRMSPR--------------------SVLTTGVGTTTAGLTVSALREN--G----- 288 (345)
Q Consensus 240 ~~iLl~G----~pGtGKs~l~~~i~~~~~~--------------------~~~~~~~~~~~~glt~~~~~~~--~----- 288 (345)
.|+.+.+ .+|.+++...+.+...... .-++...+.+...|...+.-+. |
T Consensus 132 ~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~ 211 (647)
T COG1067 132 QQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTT 211 (647)
T ss_pred hhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCC
Confidence 3666766 8888888877655444211 1122223333444555554332 1
Q ss_pred -eeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 289 -EWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 289 -~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
.-.++||++-.||+||+||||++.+....+..++.+|++++-.
T Consensus 212 ~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~ 255 (647)
T COG1067 212 GHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQP 255 (647)
T ss_pred CcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhcccc
Confidence 4457899999999999999999999988999999999887443
No 253
>KOG0730|consensus
Probab=96.19 E-value=0.0014 Score=66.30 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=55.3
Q ss_pred eeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc---cCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCC
Q psy1366 236 VRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG---TTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSS 312 (345)
Q Consensus 236 ~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~---~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk 312 (345)
++....+|++||||+|||.+++++++...-.++..... +...|-+-+..|.. | +-+...+-.-+++|||+|.
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~--f---~~a~k~~~psii~IdEld~ 289 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKA--F---AEALKFQVPSIIFIDELDA 289 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHH--H---HHHhccCCCeeEeHHhHhh
Confidence 34446899999999999999999999876433322211 11122121111210 0 1111122267999999998
Q ss_pred CCH----------HhHHHHHHHHh-----CCEEEEeeCCeEE
Q psy1366 313 IKE----------HDRTSIHEAME-----QQTISVAKDKESK 339 (345)
Q Consensus 313 ~~~----------~~~~~l~eame-----~~~i~i~k~gi~~ 339 (345)
+-+ ..-..|+..|+ .+.|.++-.+...
T Consensus 290 l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~ 331 (693)
T KOG0730|consen 290 LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD 331 (693)
T ss_pred hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc
Confidence 764 22345555554 3455655544433
No 254
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.17 E-value=0.0048 Score=51.46 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=24.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
+|+|+|+||+|||++++.+++.++...+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999887665543
No 255
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.16 E-value=0.0052 Score=52.25 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=26.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|+|+|+||+|||++++.+++.++..++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 489999999999999999999988765543
No 256
>PHA00729 NTP-binding motif containing protein
Probab=96.14 E-value=0.0038 Score=56.06 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+++++|+||||||+|+..+++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998653
No 257
>PRK14530 adenylate kinase; Provisional
Probab=96.12 E-value=0.0057 Score=54.54 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|+|+|+||+|||++++.+++.++-....+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3799999999999999999999887544433
No 258
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.11 E-value=0.006 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+++++|++|+|||+|++.+.+.+.
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999997776553
No 259
>KOG1808|consensus
Probab=96.10 E-value=0.0054 Score=69.00 Aligned_cols=97 Identities=18% Similarity=0.308 Sum_probs=73.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc--cCcCCceE-EEEeecCeeEeeeceeeec--CCcEEEEcCCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG--TTTAGLTV-SALRENGEWHLEAGALVLS--DGGVCCIDEFSSIK 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~--~~~~glt~-~~~~~~~~~~~~~G~l~la--~~gi~~IDEidk~~ 314 (345)
.++||.||.|+|||.+++++++...+.+...... .+...+-. .+..++|....+-|+++.| +|-.+++||++..+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 5999999999999999999999887655433221 11111111 2334457777888998876 58889999999999
Q ss_pred HHhHHHHHHHHhC-CEEEEeeCC
Q psy1366 315 EHDRTSIHEAMEQ-QTISVAKDK 336 (345)
Q Consensus 315 ~~~~~~l~eame~-~~i~i~k~g 336 (345)
.+...+|...+++ +.+.+...-
T Consensus 521 ~dvL~aLnrllddnRel~ipe~~ 543 (1856)
T KOG1808|consen 521 HDVLEALNRLLDDNRELFIPETQ 543 (1856)
T ss_pred hHHHHHHHhhhhhhccccccccc
Confidence 9999999999998 777776544
No 260
>PRK00625 shikimate kinase; Provisional
Probab=96.08 E-value=0.0059 Score=52.74 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+|+|+|.||+|||++++.+++.+...++-.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~ 31 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDT 31 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEh
Confidence 799999999999999999999877655433
No 261
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.06 E-value=0.0064 Score=53.94 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=15.5
Q ss_pred eeeeCCCCChHHHHHHHHHhh
Q psy1366 242 LLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++.||||||||+++..+...
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 899999999999755555443
No 262
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.06 E-value=0.0069 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.1
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
|+++|+||+|||++++.+++..+-...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 689999999999999999998764333
No 263
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.0067 Score=56.60 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=50.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC----ccCcCCceEE------------EEeec-CeeEeeeceeeecC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV----GTTTAGLTVS------------ALREN-GEWHLEAGALVLSD 301 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~----~~~~~glt~~------------~~~~~-~~~~~~~G~l~la~ 301 (345)
.+-.||.||+|+||..++..+++.+--.-..... ...-..+... ..|+- ....+.| ..+.
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p---~e~~ 95 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHP---YESP 95 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCc---cCCC
Confidence 3578899999999999999998765210000000 0000111100 00000 0111111 2244
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.-|++||+.|+|+.+.+++|+..||+
T Consensus 96 ~kv~ii~~ad~mt~~AaNaLLK~LEE 121 (290)
T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLED 121 (290)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhc
Confidence 67999999999999999999999997
No 264
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0058 Score=53.03 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+++|+||.|||++++.+++.++-.-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999765433
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.0072 Score=61.78 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.++|+|++|+|||.|++++++.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999865
No 266
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.99 E-value=0.0082 Score=56.90 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=39.3
Q ss_pred hccCcccccchHHHHH--HHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 202 ASICPAIYGLYLVKLC--LAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 202 ~s~~p~i~G~~~vk~~--i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..+.-.+.||..+++| ++.-++..-. .+---||+.||||||||.||-.+++.++.
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk---------~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGK---------MAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCc---------ccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4456678899888765 4444442200 11137999999999999999999998874
No 267
>PHA02624 large T antigen; Provisional
Probab=95.99 E-value=0.018 Score=58.62 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+||+||||||||+++.++.+.+..
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999843
No 268
>PRK07261 topology modulation protein; Provisional
Probab=95.98 E-value=0.0078 Score=51.78 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+++|+||+|||+|++.+++.++-..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i 29 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVL 29 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence 5899999999999999999987654443
No 269
>PRK13949 shikimate kinase; Provisional
Probab=95.97 E-value=0.0072 Score=51.92 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
+|+|+|+||+|||++++.+++.+...++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 69999999999999999999988765443
No 270
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.96 E-value=0.016 Score=59.05 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred ecCCcEEEEcCCCC-CCHHhHHHHHHHHhC
Q psy1366 299 LSDGGVCCIDEFSS-IKEHDRTSIHEAMEQ 327 (345)
Q Consensus 299 la~~gi~~IDEidk-~~~~~~~~l~eame~ 327 (345)
+-...++||||... ++++.+..|++++++
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 34578999999976 789999999999988
No 271
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.94 E-value=0.0083 Score=54.22 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=27.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
..|+|+|+||+|||++++.+++...-....+|
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999998876555554
No 272
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.92 E-value=0.011 Score=62.29 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=50.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC-----CeEEEcCCccCc-------CCceEEEEeecCeeEeeecee------eecCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP-----RSVLTTGVGTTT-------AGLTVSALRENGEWHLEAGAL------VLSDG 302 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~-----~~~~~~~~~~~~-------~glt~~~~~~~~~~~~~~G~l------~la~~ 302 (345)
.+++.|.||||||++++.+.+.+. ..+.....+..+ .|..+.-... -....++.. ...+.
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~--lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHR--LLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHH--HhhccCCccchhhhhccccC
Confidence 799999999999999998877653 233332211111 1111110000 000001100 01246
Q ss_pred cEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 303 GVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 303 gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
.+++|||...++......|++++..+
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhCCCC
Confidence 79999999999999889999888654
No 273
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.90 E-value=0.0056 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred eeeeCCCCChHHHHHHHHHhhC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 274
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.90 E-value=0.004 Score=61.95 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|++|+|||.|++++++.+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHH
Confidence 69999999999999999998743
No 275
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.90 E-value=0.0092 Score=51.84 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=24.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|+++|+||+|||++++.+++..+-....
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 48999999999999999999987654433
No 276
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.011 Score=56.70 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 300 SDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 300 a~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+..-|++||+.|+|+....++|+..||+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEE 158 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEE 158 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 4457999999999999999999999997
No 277
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.82 E-value=0.034 Score=51.27 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=47.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe---EEE-cCCccC-cCCce-EEEEee--cCeeEeeeceeeecCCcEEEEcCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS---VLT-TGVGTT-TAGLT-VSALRE--NGEWHLEAGALVLSDGGVCCIDEFS 311 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~-~~~~~~-~~glt-~~~~~~--~~~~~~~~G~l~la~~gi~~IDEid 311 (345)
-++++.|++|+|||++++++....|.. +.+ ...... ..+.. ...... ...+.---....+.+.-+++|+|+.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 399999999999999999999988765 111 111000 01111 111111 1111000111234567899999999
Q ss_pred CCCHHhHHHHHHHHhCCEEE
Q psy1366 312 SIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 312 k~~~~~~~~l~eame~~~i~ 331 (345)
.. +...+ .++++.|...
T Consensus 208 ~~--e~~~~-~~a~~tGh~~ 224 (270)
T PF00437_consen 208 DP--EAAEA-IQAANTGHLG 224 (270)
T ss_dssp SC--HHHHH-HHHHHTT-EE
T ss_pred CH--hHHHH-HHhhccCCce
Confidence 75 33344 8888887643
No 278
>KOG0741|consensus
Probab=95.81 E-value=0.0056 Score=60.67 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-|||+||||||||.+||.+-+.+.
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLN 281 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLN 281 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhc
Confidence 499999999999999999998885
No 279
>PRK04132 replication factor C small subunit; Provisional
Probab=95.76 E-value=0.0048 Score=65.37 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=50.2
Q ss_pred eceeeeC--CCCChHHHHHHHHHhhCCC-----eEEEcCCccCcCCceEEEEeec-CeeEeeeceeeecCCcEEEEcCCC
Q psy1366 240 SHLLLVG--DPGTGKSEILKFAKRMSPR-----SVLTTGVGTTTAGLTVSALREN-GEWHLEAGALVLSDGGVCCIDEFS 311 (345)
Q Consensus 240 ~~iLl~G--~pGtGKs~l~~~i~~~~~~-----~~~~~~~~~~~~glt~~~~~~~-~~~~~~~G~l~la~~gi~~IDEid 311 (345)
+|-+.-| |.+.|||++++++++.+.. .+. .-.+++..|.. .+|+. .++... ..+.-++..|++|||+|
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~l-ElNASd~rgid--~IR~iIk~~a~~-~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFL-ELNASDERGIN--VIREKVKEFART-KPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEE-EEeCCCcccHH--HHHHHHHHHHhc-CCcCCCCCEEEEEECcc
Confidence 3556778 8999999999999987621 121 11122222211 11110 111000 00101134699999999
Q ss_pred CCCHHhHHHHHHHHhC
Q psy1366 312 SIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 312 k~~~~~~~~l~eame~ 327 (345)
+|+.+.|++|+..||+
T Consensus 641 ~Lt~~AQnALLk~lEe 656 (846)
T PRK04132 641 ALTQDAQQALRRTMEM 656 (846)
T ss_pred cCCHHHHHHHHHHhhC
Confidence 9999999999999995
No 280
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.75 E-value=0.01 Score=51.59 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
.+.|+|++|+|||+|++.++...+..+...+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~ 34 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAH 34 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcC
Confidence 7899999999999999999998766555544
No 281
>PRK14531 adenylate kinase; Provisional
Probab=95.75 E-value=0.01 Score=51.52 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+++|+||+|||++++.+++..+-...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 6999999999999999999988765443
No 282
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.74 E-value=0.0088 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.3
Q ss_pred eeeeCCCCChHHHHHHHHHhhC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999885
No 283
>PRK06217 hypothetical protein; Validated
Probab=95.73 E-value=0.012 Score=51.15 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+|+|+|.||+|||++++.+++.++..++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 699999999999999999999987655433
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.72 E-value=0.0058 Score=53.02 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=45.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC---Ce-EEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC--
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP---RS-VLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI-- 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~---~~-~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~-- 313 (345)
.+++|+|+||||||.|+.+++..+- .. .|+.-. .-...+..+ +..+.+ +.-.-.+.+--+++||||...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~-~L~~~l~~~--~~~~~~--~~~~~~l~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS-DLLDELKQS--RSDGSY--EELLKRLKRVDLLILDDLGYEPL 122 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH-HHHHHHHCC--HCCTTH--CHHHHHHHTSSCEEEETCTSS--
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC-ceecccccc--ccccch--hhhcCccccccEecccccceeee
Confidence 4899999999999999999986431 11 121100 000000000 001110 000012345679999999875
Q ss_pred CHHhHHHHHHHHhCC
Q psy1366 314 KEHDRTSIHEAMEQQ 328 (345)
Q Consensus 314 ~~~~~~~l~eame~~ 328 (345)
++.....|+++++.+
T Consensus 123 ~~~~~~~l~~ii~~R 137 (178)
T PF01695_consen 123 SEWEAELLFEIIDER 137 (178)
T ss_dssp -HHHHHCTHHHHHHH
T ss_pred cccccccchhhhhHh
Confidence 455667778887654
No 285
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.66 E-value=0.013 Score=50.45 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=26.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
+|+|+|++|+|||++++.+++.+...++...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 7999999999999999999998876655443
No 286
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.65 E-value=0.012 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
++|+|+||+|||++++.+++.++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 5789999999999999999988643
No 287
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.65 E-value=0.0091 Score=55.79 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=43.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE-EEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV-LTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDR 318 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~-~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~ 318 (345)
.-+-|+|++++|||++++.++.+...+- +...-.+|..|| .+.+...++..++|||+...++.+.
T Consensus 194 ~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~~l~~sw~~T~n~l--------------e~~a~~~nd~~l~lDE~~~~~~~~~ 259 (286)
T PF06048_consen 194 FGFHLYGQSSSGKTTALQLAASVWGNPDGLIRSWNSTDNGL--------------ERTAAAHNDLPLVLDELSQADPKDV 259 (286)
T ss_pred eEEEEEeCCCCCHHHHHHHhhhhCcCchhhhhcchhhHHHH--------------HHHHHHcCCcceEehhccccchhHH
Confidence 3566899999999999999998876544 111111222222 1222334577899999999888653
Q ss_pred H
Q psy1366 319 T 319 (345)
Q Consensus 319 ~ 319 (345)
.
T Consensus 260 ~ 260 (286)
T PF06048_consen 260 G 260 (286)
T ss_pred H
Confidence 3
No 288
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.62 E-value=0.0097 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
-++++|+||+|||++++.+++.++-...
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5889999999999999999977654433
No 289
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.62 E-value=0.012 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
++|.|+||+|||++++.+++.....+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~ 27 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPF 27 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEE
Confidence 68999999999999999999865433
No 290
>PRK06762 hypothetical protein; Provisional
Probab=95.60 E-value=0.013 Score=49.86 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-++|.|.||+|||++++.+++.++.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 578999999999999999998876443
No 291
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.59 E-value=0.02 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=23.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.++|.|+.|+|||+++|.+++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999998864
No 292
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.58 E-value=0.013 Score=56.77 Aligned_cols=87 Identities=24% Similarity=0.251 Sum_probs=51.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCc-----CCceEEEEe----ecCeeE-e--ee---ceeeecC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTT-----AGLTVSALR----ENGEWH-L--EA---GALVLSD 301 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~-----~glt~~~~~----~~~~~~-~--~~---G~l~la~ 301 (345)
.++.+.|+.|||||.+++++.+.+.. .+..++..+.+ .|-|.-..- +..... . .. -.-.+.+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~ 102 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRK 102 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhh
Confidence 48999999999999999999887744 34433322111 122211000 000000 0 00 0112334
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHh
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame 326 (345)
-.+++|||+..++.....++...|.
T Consensus 103 ~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 103 ADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred heeeecccccchhHHHHHHHHHhhh
Confidence 4689999999999988887776665
No 293
>PRK14526 adenylate kinase; Provisional
Probab=95.57 E-value=0.013 Score=52.25 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
+++|+|+||+|||++++.+++..+.....+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 6899999999999999999987665444333
No 294
>PRK14528 adenylate kinase; Provisional
Probab=95.57 E-value=0.013 Score=51.09 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
++++.|+||+|||++++.+++..+-..+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 689999999999999999998776544433
No 295
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.55 E-value=0.016 Score=59.83 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC----C---CeEEEcCCccCcCC-ce--
Q psy1366 211 LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS----P---RSVLTTGVGTTTAG-LT-- 280 (345)
Q Consensus 211 ~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~----~---~~~~~~~~~~~~~g-lt-- 280 (345)
.+.-|.|+.+++..+ -.++.|+||||||++++.+...+ + ..++.......++. |+
T Consensus 154 ~d~Qk~Av~~a~~~~---------------~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 154 VDWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred CHHHHHHHHHHhcCC---------------eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 367888999888766 78999999999999887765443 1 23443332111100 00
Q ss_pred ---------------------E-EEEe------ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 281 ---------------------V-SALR------ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 281 ---------------------~-~~~~------~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
+ +..| +...+....+. .-+..+++|||...++-.....|++++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~--~l~~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 219 LGKALRQLPLTDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGN--PLHLDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred HHhhhhccccchhhhhcCCCchHHHHHHhCcCCCccchhhcccc--CCCCCeEEEChHhcccHHHHHHHHHhcccC
Confidence 0 0000 00001111111 112369999999999999999999998764
No 296
>PRK13764 ATPase; Provisional
Probab=95.55 E-value=0.016 Score=59.26 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=40.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC-Cc--cCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG-VG--TTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~-~~--~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~ 313 (345)
++|+.|+||+|||+++++++..++. .+.+.- .. ......+..... .+.+..-+..+.+.+.-++++||+...
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd~ 336 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRKT 336 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCCH
Confidence 7999999999999999999987763 221211 00 000011111001 111111123344567889999999863
No 297
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.52 E-value=0.011 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.|+|.|+||+|||++++.+++.++...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 699999999999999999999876543
No 298
>KOG2035|consensus
Probab=95.52 E-value=0.067 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
-.++.|.|.|++..+.|.+|..-||.
T Consensus 128 fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 128 FKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred eEEEEEechHhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999995
No 299
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.50 E-value=0.011 Score=46.84 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
+|+++|++|+|||+|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987654
No 300
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.48 E-value=0.013 Score=61.92 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=50.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccC-------cCCceEEEEeecCee--EeeeceeeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTT-------TAGLTVSALRENGEW--HLEAGALVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~-------~~glt~~~~~~~~~~--~~~~G~l~la~~gi~~ID 308 (345)
-++|.|+||||||++++.+...+. ..+......+. ..|..+.-+ ..| ....+.-.+...-+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti---~~~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL---ASLEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH---HHHHhhhccCcccCCCCcEEEEE
Confidence 578999999999999999876543 22322221111 112211100 011 012222234567899999
Q ss_pred CCCCCCHHhHHHHHHHHh
Q psy1366 309 EFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame 326 (345)
|+..++......|+...+
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999998888888554
No 301
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.44 E-value=0.0098 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
+++++|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999987663
No 302
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.44 E-value=0.015 Score=51.61 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=24.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
|+++|+||+|||++++.+++..+-....+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 79999999999999999998776544433
No 303
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.43 E-value=0.01 Score=52.44 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=53.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhH
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDR 318 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~ 318 (345)
+.-++|+|+-|+|||++++.+... .|....... ++++ ....+...-+++|||++.++..+.
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~----------~~kd-----~~~~l~~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF----------DDKD-----FLEQLQGKWIVELDELDGLSKKDV 112 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccccC----------CCcH-----HHHHHHHhHheeHHHHhhcchhhH
Confidence 457899999999999999988432 332221100 0111 112334456899999999999999
Q ss_pred HHHHHHHhCCEEEEeeC
Q psy1366 319 TSIHEAMEQQTISVAKD 335 (345)
Q Consensus 319 ~~l~eame~~~i~i~k~ 335 (345)
+.|-..+-..++++-.+
T Consensus 113 ~~lK~~iT~~~~~~R~p 129 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPP 129 (198)
T ss_pred HHHHHHhcccceeeecC
Confidence 99999988887776543
No 304
>PRK06921 hypothetical protein; Provisional
Probab=95.41 E-value=0.011 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
+++|+|+||+|||.|+.++++.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999988653
No 305
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.40 E-value=0.026 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+++++|++|+|||++++++..+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 38999999999999999999988764
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.40 E-value=0.15 Score=47.13 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=47.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccC--cCCceEEEEeecCeeEee--eceeeecCCcEEEEcCCCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTT--TAGLTVSALRENGEWHLE--AGALVLSDGGVCCIDEFSSI 313 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~--~~glt~~~~~~~~~~~~~--~G~l~la~~gi~~IDEidk~ 313 (345)
.+++.|++|+|||++++++....+. .+.+...... ..+...........+.+. --.....+.-+++++|+...
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCCH
Confidence 7999999999999999988665543 2222211110 112211111111111110 00123457789999999874
Q ss_pred CHHhHHHHHHHHhCCEE
Q psy1366 314 KEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 314 ~~~~~~~l~eame~~~i 330 (345)
.. -.++++++..|..
T Consensus 162 e~--a~~~~~aa~tGh~ 176 (264)
T cd01129 162 ET--AEIAVQAALTGHL 176 (264)
T ss_pred HH--HHHHHHHHHcCCc
Confidence 32 3456777777654
No 307
>PRK02496 adk adenylate kinase; Provisional
Probab=95.40 E-value=0.014 Score=50.49 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++++|+||+|||++++.+++..+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999987765444
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.35 E-value=0.01 Score=56.50 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=46.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---e-EEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCC--CC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---S-VLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSS--IK 314 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~-~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk--~~ 314 (345)
+++|+|+||||||.|+.++++.+-. . +|.+... -...+..+. .+.. ...+...-.+.+--+++|||+.. .+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~-l~~~l~~~~-~~~~-~~~~~~~~~l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE-LIEILREIR-FNND-KELEEVYDLLINCDLLIIDDLGTEKIT 261 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH-HHHHHHHHH-hccc-hhHHHHHHHhccCCEEEEeccCCCCCC
Confidence 8999999999999999999886521 2 2222100 000000000 0000 00000001122346899999955 56
Q ss_pred HHhHHHHHHHHhCC
Q psy1366 315 EHDRTSIHEAMEQQ 328 (345)
Q Consensus 315 ~~~~~~l~eame~~ 328 (345)
+..+..|++.++.+
T Consensus 262 ~~~~~~Lf~iin~R 275 (329)
T PRK06835 262 EFSKSELFNLINKR 275 (329)
T ss_pred HHHHHHHHHHHHHH
Confidence 66678888887653
No 309
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.34 E-value=0.024 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=24.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+||+.|++|+|||++++++....|.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 49999999999999999999998885
No 310
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.34 E-value=0.061 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|+||+|||+|++++...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999988764
No 311
>PF05729 NACHT: NACHT domain
Probab=95.28 E-value=0.013 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+++.|+||+|||++++.++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 37899999999999999988544
No 312
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.28 E-value=0.024 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.++++||+|+|||+|+|.++.+.+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 7999999999999999999998765
No 313
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.27 E-value=0.019 Score=47.31 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=24.9
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
|.+.|+||+|||++++.+++.++-+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999998776555443
No 314
>PF13479 AAA_24: AAA domain
Probab=95.25 E-value=0.014 Score=52.05 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=24.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV 272 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~ 272 (345)
+.+||+|+||+|||+++..+ |+.++..--
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E 32 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTE 32 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeC
Confidence 68999999999999998877 887776643
No 315
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.24 E-value=0.02 Score=50.96 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.|+++|+||+|||++++.+++..+-.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 589999999999999999998887555544
No 316
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.22 E-value=0.016 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-++++|+||+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 317
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.22 E-value=0.01 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=19.6
Q ss_pred eeceeeeCCCCChHHHHHHHHH
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
...+|++|+||+|||+++++++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4579999999999999999874
No 318
>PLN02200 adenylate kinase family protein
Probab=95.21 E-value=0.022 Score=51.64 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=25.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..+++.|+||+|||++++.+++.++-..+.+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 5799999999999999999998876544433
No 319
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.21 E-value=0.019 Score=53.67 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=24.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+++.|+||+|||++++.+++.++...+.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 688899999999999999999885444443
No 320
>KOG0732|consensus
Probab=95.21 E-value=0.018 Score=61.69 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=38.6
Q ss_pred Ccccccch----HHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 205 CPAIYGLY----LVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 205 ~p~i~G~~----~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
+++|-|.+ .+|..+++-|.-+... +...+...--+|+.|+||||||.++++++....+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f---~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~ 325 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFF---DNFNITPPRGVLFHGPPGTGKTLMARALAAACSR 325 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHh---hhcccCCCcceeecCCCCCchhHHHHhhhhhhcc
Confidence 56777765 4466666666544221 1122222235999999999999999999988765
No 321
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.20 E-value=0.019 Score=48.97 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=26.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+++|+|.||+|||++++.+++.++..++-.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 789999999999999999999887665543
No 322
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.17 E-value=0.062 Score=51.56 Aligned_cols=88 Identities=22% Similarity=0.196 Sum_probs=48.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCc--CC-ceEEEEeecCe--eEeeece---eeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTT--AG-LTVSALRENGE--WHLEAGA---LVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~--~g-lt~~~~~~~~~--~~~~~G~---l~la~~gi~~ID 308 (345)
.+|+.|++|+|||++++++....+. .+.+....... .+ ......++.+. ..+ ..+ ....+..++++|
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~-~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSF-ANALRAALREDPDVILIG 202 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCH-HHHHHHhhccCCCEEEEe
Confidence 8999999999999999998876542 23333221110 00 00000111110 000 111 123578999999
Q ss_pred CCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~~i~ 331 (345)
|+. +++.....+++.+.|...
T Consensus 203 Eir--d~~~~~~~l~aa~tGh~v 223 (343)
T TIGR01420 203 EMR--DLETVELALTAAETGHLV 223 (343)
T ss_pred CCC--CHHHHHHHHHHHHcCCcE
Confidence 997 444445556677766543
No 323
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.065 Score=45.03 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=50.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC---Cc--eEEEEeecCeeEeeece--------eeecCCc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA---GL--TVSALRENGEWHLEAGA--------LVLSDGG 303 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~---gl--t~~~~~~~~~~~~~~G~--------l~la~~g 303 (345)
-.+.|+|++|+|||+|++.++.+.+. .++..+...... .+ .....- .+-.|. ....+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~-----qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP-----QLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe-----eCCHHHHHHHHHHHHHhcCCC
Confidence 48899999999999999999987753 233333211100 00 000000 011222 1224578
Q ss_pred EEEEcCCC-CCCHHhHHHHHHHHhC
Q psy1366 304 VCCIDEFS-SIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 304 i~~IDEid-k~~~~~~~~l~eame~ 327 (345)
++++||.. .++...+..+.+++.+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999987 4888888888887753
No 324
>PRK13946 shikimate kinase; Provisional
Probab=95.14 E-value=0.021 Score=49.62 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=26.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-+|+|+|.||+|||++++.+++.++..++-+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 4899999999999999999999887665543
No 325
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.14 E-value=0.018 Score=49.45 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=26.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|.|+|.+|+|||++.+.+|+.+...++-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 489999999999999999999999876543
No 326
>PRK08233 hypothetical protein; Provisional
Probab=95.12 E-value=0.018 Score=49.46 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=22.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.-|.+.|+||+|||++++.+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 35788999999999999999998863
No 327
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.11 E-value=0.02 Score=40.59 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+|.|+.|+|||+|+.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999997665
No 328
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.08 E-value=0.056 Score=60.43 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=74.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc--CCccCcCCceEEEEe-ecCeeEeeeceeeec--CCcEEEEcCCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT--GVGTTTAGLTVSALR-ENGEWHLEAGALVLS--DGGVCCIDEFSSIK 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~--~~~~~~~glt~~~~~-~~~~~~~~~G~l~la--~~gi~~IDEidk~~ 314 (345)
.+|+|.|+-|.|||.|..-+++..+..+... +..+.+.-|-.+..- ..|+|...+|.|..| .|-.+++..|||.+
T Consensus 150 ~pI~l~g~~gsgksfLisel~~~~G~~iV~Ihl~e~TDak~LiGtYts~KpG~fEw~~GvL~~avv~G~WILf~~Idkap 229 (4600)
T COG5271 150 VPIYLEGGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSPKPGDFEWMKGVLIEAVVSGDWILFKRIDKAP 229 (4600)
T ss_pred cceEEecCccccHHHHHHHHHHHhCceEEEEecccccCchheeeeccCCCCCceeeccchhhhhhhcCcEEEEeecccCc
Confidence 4899999999999999999999888544222 222233223333322 247788889988765 47889999999999
Q ss_pred HHhHHHHHHHHhCCEEEEeeCCe
Q psy1366 315 EHDRTSIHEAMEQQTISVAKDKE 337 (345)
Q Consensus 315 ~~~~~~l~eame~~~i~i~k~gi 337 (345)
.+....|+..+|.+++.|...|-
T Consensus 230 ~~vLs~Ll~llekR~L~ipsrGE 252 (4600)
T COG5271 230 HGVLSYLLTLLEKRRLLIPSRGE 252 (4600)
T ss_pred hhHHHHHHHHHHhhhhccCCCCc
Confidence 99999999999999999977664
No 329
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.04 E-value=0.033 Score=50.25 Aligned_cols=46 Identities=30% Similarity=0.358 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHH---HHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 207 AIYGLYLVKLCLAV---VLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 207 ~i~G~~~vk~~i~l---~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+|.|.+..|.++.- +.+.|-+- -|+||+|.-|||||+|.|++....
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pA-----------NnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPA-----------NNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcc-----------cceEEecCCCCChHHHHHHHHHHH
Confidence 47788888888753 45555221 399999999999999999998754
No 330
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.04 Score=49.90 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=26.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGV 272 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~ 272 (345)
=+-++||+|+|||+|++.++.+... .+...|.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~ 65 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR 65 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 6899999999999999999988754 3555554
No 331
>PRK13948 shikimate kinase; Provisional
Probab=95.01 E-value=0.025 Score=49.26 Aligned_cols=31 Identities=32% Similarity=0.219 Sum_probs=26.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|+|+|.+|+|||++++.+++.++..++-+
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~ 41 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHFIDT 41 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEEC
Confidence 4899999999999999999999887765433
No 332
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.97 E-value=0.031 Score=53.31 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=37.2
Q ss_pred eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEee
Q psy1366 294 AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAK 334 (345)
Q Consensus 294 ~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k 334 (345)
.|.+..|++|++=+=|+-|.+.+....||.+.+++.+.+.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~ 266 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDE 266 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCC
Confidence 68889999999988899999999999999999999998854
No 333
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.92 E-value=0.069 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.3
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
-++|+||.|.|||+++|.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 589999999999999999984
No 334
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.89 E-value=0.017 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+++|+|+||+|||.|+.+++..+-
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998763
No 335
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.0063 Score=53.93 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=25.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-+.++||+|+|||+|+|.+..+-+. .+++.|
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 7899999999999999999876543 455555
No 336
>PLN02459 probable adenylate kinase
Probab=94.84 E-value=0.04 Score=50.66 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
++++|+|+||+||+++++.+++..+-....+|
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~g 61 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCc
Confidence 57999999999999999999998765444333
No 337
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.83 E-value=0.021 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-++|+|++|+|||+|++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5889999999999999999997765
No 338
>PRK14529 adenylate kinase; Provisional
Probab=94.81 E-value=0.022 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
+|+|+|+||+|||++++.+++.+.-..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 689999999999999999999876443
No 339
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.75 E-value=0.056 Score=59.01 Aligned_cols=84 Identities=23% Similarity=0.361 Sum_probs=53.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccC-------cCCceEEEEeecCee--EeeeceeeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTT-------TAGLTVSALRENGEW--HLEAGALVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~-------~~glt~~~~~~~~~~--~~~~G~l~la~~gi~~ID 308 (345)
-.++.|.+|||||++++.+.+.+. ..+.....+.. ..|+.+.-+ ..| ....|.-.+..+.+++||
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI---as~ll~~~~~~~~l~~~~vlVID 475 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL---SSWELRWNQGRDQLDNKTVFVLD 475 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH---HHHHhhhccCccCCCCCcEEEEE
Confidence 689999999999999999987652 23332221111 123222100 111 112333345557799999
Q ss_pred CCCCCCHHhHHHHHHHHhC
Q psy1366 309 EFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~ 327 (345)
|...++..+...|+..+++
T Consensus 476 EAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 476 EAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred CcccCCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 340
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.74 E-value=0.024 Score=48.05 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.0
Q ss_pred eeeeCCCCChHHHHHHHHHhh
Q psy1366 242 LLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~ 262 (345)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 341
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.74 E-value=0.036 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
+.|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987643
No 342
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.038 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=22.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
|++++|+||||||..++++.+.+.
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHH
Confidence 799999999999999999998664
No 343
>PLN02674 adenylate kinase
Probab=94.73 E-value=0.031 Score=50.97 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.+|+|+|+||+||+++++.+++.++-..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 4799999999999999999999876433
No 344
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.70 E-value=0.044 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=24.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.|||+.|++|+|||++++++....|.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 49999999999999999999998875
No 345
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.70 E-value=0.025 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=22.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.++|+|++|+|||++++.+++.++
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999998876
No 346
>PRK14527 adenylate kinase; Provisional
Probab=94.69 E-value=0.024 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-++++|+||+|||++++.+++..+.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999876654
No 347
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.60 E-value=0.028 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+|++|+|||+|++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999999887
No 348
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.57 E-value=0.024 Score=44.98 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.5
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 349
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.57 E-value=0.042 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||.|+-.....+|.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCc
Confidence 37999999999999999999998874
No 350
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.55 E-value=0.039 Score=48.78 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+++|+||.|+|||+|++.+.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 38999999999999999999988743
No 351
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.54 E-value=0.21 Score=41.59 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|+||+|||+|+.++...
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 57999999999999999998653
No 352
>PRK04040 adenylate kinase; Provisional
Probab=94.49 E-value=0.04 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998875
No 353
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.48 E-value=0.029 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++++|+|+||+|||+|++++.+-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998743
No 354
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.022 Score=50.10 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=49.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCCc--cCc---CCceEEEEeecCeeEeeec--eeeecCCcEEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGVG--TTT---AGLTVSALRENGEWHLEAG--ALVLSDGGVCCID 308 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~~--~~~---~glt~~~~~~~~~~~~~~G--~l~la~~gi~~ID 308 (345)
.-+.|+|.+|+|||+|++.++..+. ..++..+.. ... .++.. .+..++...-+ +..+++.|..+|.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~~~G~~VI~ 101 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSD---ADRKENIRRVGEVAKLMVDAGLVVLT 101 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCc---ccHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3789999999999999999998653 134443311 000 11110 11011110000 1123445667777
Q ss_pred CCCCCCHHhHHHHHHHHhCC
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~ 328 (345)
.+..+..+.++.+.+.|.+.
T Consensus 102 ~~~~~~~~~R~~~r~~l~~~ 121 (198)
T PRK03846 102 AFISPHRAERQMVRERLGEG 121 (198)
T ss_pred EeCCCCHHHHHHHHHHcccC
Confidence 77777778888888888654
No 355
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.031 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=19.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.|++.|.||+|||++++.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh
Confidence 5899999999999999999943
No 356
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.41 E-value=0.025 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|+||+|||.|++++++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998765
No 357
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.40 E-value=0.044 Score=50.23 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-.+-|+||.|+|||+|+|.++.+++. .++..|
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 37899999999999999999998864 355555
No 358
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.30 E-value=0.033 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+|+|+|+||+|||+|++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988753
No 359
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.30 E-value=0.06 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=24.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-++++.|++|+|||++++++....|.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc
Confidence 49999999999999999999988874
No 360
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.28 E-value=0.028 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|+||+|||.|++++++.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999875
No 361
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.28 E-value=0.049 Score=48.03 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.-+++.|.||+|||++++.++..++......
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~ 34 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLS 34 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEeh
Confidence 3689999999999999999998876544433
No 362
>PRK04182 cytidylate kinase; Provisional
Probab=94.26 E-value=0.047 Score=46.61 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|.|.|.||+|||++++.+++.++..++-
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999988765554
No 363
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.20 E-value=0.033 Score=46.68 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.6
Q ss_pred eeeeCCCCChHHHHHHHHHhhC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
++++|.||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887
No 364
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.20 E-value=0.055 Score=58.60 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=49.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---CeEEEcCCccCc-------CCceEEEEeecCee--EeeeceeeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---RSVLTTGVGTTT-------AGLTVSALRENGEW--HLEAGALVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~~~~~~~~~~~~-------~glt~~~~~~~~~~--~~~~G~l~la~~gi~~ID 308 (345)
.+++.|.||||||++++.+.+++. ..+.....+..+ .|..+.-+ ..| ....|...+...-+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI---~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTI---ASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhH---HHHHhhhcccccccccCcEEEEE
Confidence 467999999999999998776542 233322211111 12111000 011 011233334556799999
Q ss_pred CCCCCCHHhHHHHHHHHhC
Q psy1366 309 EFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~ 327 (345)
|...++..+...|+...+.
T Consensus 441 EASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred CcccCCHHHHHHHHHhhhh
Confidence 9999999988888876543
No 365
>PRK01184 hypothetical protein; Provisional
Probab=94.20 E-value=0.05 Score=46.99 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=21.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-|+|+|+||+|||++++. ++..+-.+...
T Consensus 3 ~i~l~G~~GsGKsT~a~~-~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI-AREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHHH-HHHcCCcEEEh
Confidence 588999999999999984 45555444433
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.048 Score=46.25 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=26.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
|-+-|+||+|||++++.+++.++-.++.+|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG 32 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAG 32 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeecc
Confidence 567899999999999999999988777655
No 367
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.17 E-value=0.033 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|+||+|||.|++++++.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Confidence 79999999999999999999764
No 368
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.14 E-value=0.037 Score=46.52 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.0
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+++|+||+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999987654
No 369
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.13 E-value=0.039 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.5
Q ss_pred eeeeCCCCChHHHHHHHHHhhC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
|.|.|++|+|||+|++.++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 370
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.10 E-value=0.039 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|++|+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988754
No 371
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.10 E-value=0.049 Score=48.08 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGV 272 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~ 272 (345)
.-++++|+||+|||+++..++... .+.+|++..
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 379999999999999988776433 245666654
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.09 E-value=0.063 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-++|+|++|+|||+|+.++...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999988754
No 373
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.07 E-value=0.039 Score=47.52 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=21.1
Q ss_pred eeeeCCCCChHHHHHHHHHhhC----CCeEEEcC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS----PRSVLTTG 271 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~ 271 (345)
+|+.|+||+|||.|+..++... .+.+|.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999887654322 23455553
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.07 E-value=0.04 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-+.+.|++|+|||+|++.++..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998876
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.06 E-value=0.17 Score=42.78 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
++++|+.|+|||++++.+.+..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6799999999999999887653
No 376
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.05 E-value=0.04 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|+||+|||+|+.++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988753
No 377
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.05 E-value=0.056 Score=45.79 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=25.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-|.+.|+||+|||++++.+++.++-.++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 478999999999999999999877655543
No 378
>KOG0060|consensus
Probab=94.01 E-value=0.035 Score=55.75 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=24.9
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
+..-|+|++||+|+|||+|+|.++.+.|
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 3445999999999999999999999876
No 379
>PLN02165 adenylate isopentenyltransferase
Probab=93.94 E-value=0.071 Score=50.68 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.+.|+||+|+|||+|+..+++.++..+.
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 7899999999999999999999876544
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.92 E-value=0.025 Score=46.21 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-++.++|++|+|||+|++.++...+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 38999999999999999999987753
No 381
>KOG1942|consensus
Probab=93.91 E-value=0.056 Score=50.14 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=37.8
Q ss_pred ccCcccccchHHHHHH--HHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 203 SICPAIYGLYLVKLCL--AVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i--~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..+-.+.||+.++.|. +.-++.. |... | --+||-||||||||.|+-++++.++.
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~--Kkma-G------ravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKS--KKMA-G------RAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHh--hhcc-C------cEEEEecCCCCchhHHHHHHHHHhCC
Confidence 4556778998877653 3334322 1111 1 37999999999999999999998865
No 382
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.88 E-value=0.047 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.5
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|+||+|||+|++.+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999988874
No 383
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=93.87 E-value=0.017 Score=58.30 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.++||+.+.+|+.++|--. +..-||.++|+|||||+++++.+.+
T Consensus 8 ~~~iGQ~RA~~Al~~gl~i~-----------~~GYNIfv~G~~GtGr~t~v~~~l~ 52 (509)
T PF13654_consen 8 EGIIGQERAVEALEFGLGIR-----------KPGYNIFVMGPPGTGRRTYVRRFLE 52 (509)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccccccccccccccc-----------ccccccccccccccccccccccccc
Confidence 57899999999999888532 1114999999999999998776654
No 384
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.095 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.+.||+|+|||+|+..++-+.+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc
Confidence 7899999999999999999987653
No 385
>PRK06547 hypothetical protein; Provisional
Probab=93.87 E-value=0.058 Score=46.47 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
..|++.|++|+|||++++.+++..+..+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~ 43 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQL 43 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4788889999999999999998765433
No 386
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.86 E-value=0.042 Score=52.33 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=25.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-+.|+||+|+|||++||.+|-+-.. .++..|
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 6899999999999999999987653 344444
No 387
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.85 E-value=0.048 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.4
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999887764
No 388
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.85 E-value=0.045 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.|+++|+||+|||+|++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998643
No 389
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.84 E-value=0.047 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+|+++|++|+|||+|+..+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999987643
No 390
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.81 E-value=0.047 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.++++|++|+|||+|++.+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988754
No 391
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.80 E-value=0.051 Score=48.06 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=23.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|.|.|++|+|||+|++.+++.++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999873
No 392
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.80 E-value=0.044 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|+++|++|+|||+|++.+..-
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999999988653
No 393
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.80 E-value=0.043 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 394
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.79 E-value=0.041 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeeeCCCCChHHHHHHHHHhhCC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998763
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.038 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
=|+|.|.||+|||++++-+++++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999998754
No 396
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.76 E-value=0.044 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|+|.|.||+|||++++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999988764
No 397
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.75 E-value=0.046 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=19.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|+++|+||+|||+|++.+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999888643
No 398
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.74 E-value=0.049 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+++++|+||+|||+|++.+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998643
No 399
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.74 E-value=0.095 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
++|+.|++|+|||++++++....+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998864
No 400
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.33 Score=45.62 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=49.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEE------------eec-CeeEeeeceeeecCCcEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSAL------------REN-GEWHLEAGALVLSDGGVCC 306 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~------------~~~-~~~~~~~G~l~la~~gi~~ 306 (345)
+-.||+|+.|.||+++++.+++.+--.--....... ........ ++- ......| +..++.-|++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~--~~~~~~KvvI 95 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEFLSAINKLYFSS--FVQSQKKILI 95 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHHHHHHHHhccCC--cccCCceEEE
Confidence 356699999999999999998875100000000000 00000000 000 0111111 1113678999
Q ss_pred EcCCCCCCHHhHHHHHHHHhC
Q psy1366 307 IDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 307 IDEidk~~~~~~~~l~eame~ 327 (345)
||+.++|+...+++|+..||+
T Consensus 96 I~~~e~m~~~a~NaLLK~LEE 116 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEE 116 (299)
T ss_pred EecccccCHHHHHHHHHHhhC
Confidence 999999999999999999997
No 401
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.69 E-value=0.053 Score=45.81 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|+||+|||+|+.++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 58999999999999999988754
No 402
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.68 E-value=0.11 Score=50.38 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=48.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC-----CeEEEcCCccCc--CC---ceEEEEeecC----eeEeeeceeeecCCcEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP-----RSVLTTGVGTTT--AG---LTVSALRENG----EWHLEAGALVLSDGGVCC 306 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~-----~~~~~~~~~~~~--~g---lt~~~~~~~~----~~~~~~G~l~la~~gi~~ 306 (345)
.+|+.|++|+|||++++++.+..+ ..+.+....... .+ +.....++-+ .|..---.....+.-+++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 799999999999999999977652 223332211000 00 0000001101 110000112345788999
Q ss_pred EcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 307 IDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 307 IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
++|+... +.-.+.++|++.|...
T Consensus 231 vGEiRd~--et~~~al~aa~TGH~v 253 (372)
T TIGR02525 231 VGEIRDL--ETFQAAVLAGQSGHFC 253 (372)
T ss_pred eCCCCCH--HHHHHHHHHHhcCCcE
Confidence 9999854 4445667888877553
No 403
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=93.67 E-value=0.19 Score=32.57 Aligned_cols=32 Identities=31% Similarity=0.782 Sum_probs=24.3
Q ss_pred EEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC
Q psy1366 42 EYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN 80 (345)
Q Consensus 42 ~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~ 80 (345)
.|+|..||+.|.+-..+. . ..+..|| .|++..
T Consensus 5 ey~C~~Cg~~fe~~~~~~---~-~~~~~CP---~Cg~~~ 36 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQSIS---E-DDPVPCP---ECGSTE 36 (42)
T ss_pred EEEeCCCCCEEEEEEEcC---C-CCCCcCC---CCCCCc
Confidence 699999999988765432 2 5678897 699854
No 404
>PRK13808 adenylate kinase; Provisional
Probab=93.65 E-value=0.065 Score=51.03 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=24.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
+|+|+|+||+|||++++.+++.+....+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 68999999999999999999987654443
No 405
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.65 E-value=0.058 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.++|++|+|||++++.++.+...
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999998764
No 406
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.65 E-value=0.13 Score=48.51 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|.|+|.||+|||++++.+++.+...++-
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 589999999999999999999988776653
No 407
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.65 E-value=0.043 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred eeCCCCChHHHHHHHHHhhCCC
Q psy1366 244 LVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 244 l~G~pGtGKs~l~~~i~~~~~~ 265 (345)
++|+||+||+++++.+++..+-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999998754
No 408
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.63 E-value=0.052 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.6
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++++++|++|+|||+|+.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998864
No 409
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.61 E-value=0.055 Score=44.34 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+|+++|+||+|||+|+..+...-
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999886543
No 410
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.59 E-value=0.43 Score=41.26 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.0
Q ss_pred eeeeCCCCChHHHHHHHHHhhCC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+++|+.|.|||.++.++.-.+.
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56999999999999999976654
No 411
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=93.56 E-value=0.048 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999988764
No 412
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.55 E-value=0.14 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+-++||+|+|||+|+..+..+..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 689999999999999999876643
No 413
>KOG0736|consensus
Probab=93.55 E-value=0.22 Score=51.87 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc---CcCCceEEEEee--cCeeEe
Q psy1366 218 LAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT---TTAGLTVSALRE--NGEWHL 292 (345)
Q Consensus 218 i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~---~~~glt~~~~~~--~~~~~~ 292 (345)
.+.+.+.. +....+..+..+..+||.|+||+|||++.+++++.+...++.....+ ..++.+-+.... ...-..
T Consensus 412 ~l~~vl~p--~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~ 489 (953)
T KOG0736|consen 412 ELVAVLSP--QKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC 489 (953)
T ss_pred HHHHHhCc--ccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc
Confidence 44444433 23334444456678999999999999999999999999887664321 111111110000 000112
Q ss_pred eeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHh
Q psy1366 293 EAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 293 ~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame 326 (345)
.|-.+.+.|--++-||-..-.+-..+..++..|+
T Consensus 490 ~pavifl~~~dvl~id~dgged~rl~~~i~~~ls 523 (953)
T KOG0736|consen 490 SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS 523 (953)
T ss_pred CceEEEEeccceeeecCCCchhHHHHHHHHHHHh
Confidence 3445566666666677666444444566666665
No 414
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=93.55 E-value=0.13 Score=49.54 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=49.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhH-H
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDR-T 319 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~-~ 319 (345)
=++++|||.||||.++-.+.+.+...+..- .++.+ .|-+. .|++..|.+||+...--=+.. .
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViSf-~Ns~S------------hFWLq----PL~d~Ki~llDDAT~~cW~Y~D~ 326 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF-VNSKS------------HFWLQ----PLADAKIALLDDATYPCWDYIDT 326 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-G-GGTTS------------CGGGG----GGCT-SSEEEEEE-HHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEEe-cCCCC------------ccccc----chhcCcEEEEcCCcccHHHHHHH
Confidence 689999999999999999988876555321 11111 12122 466778889998765322221 3
Q ss_pred HHHHHHhCCEEEEee
Q psy1366 320 SIHEAMEQQTISVAK 334 (345)
Q Consensus 320 ~l~eame~~~i~i~k 334 (345)
.|..+|+.-.|+|..
T Consensus 327 ylRNaLDGN~vsiD~ 341 (432)
T PF00519_consen 327 YLRNALDGNPVSIDC 341 (432)
T ss_dssp HTHHHHCTSEEEEEE
T ss_pred HHHhccCCCeeeeec
Confidence 467888888888854
No 415
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=93.54 E-value=0.058 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.4
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
|.-+.++++|++|+|||+|++.+..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC
Confidence 3447899999999999999988864
No 416
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.51 E-value=0.086 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=23.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
.+|++|+||+|||+++..++..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 58999999999999999999876643
No 417
>PRK10536 hypothetical protein; Provisional
Probab=93.50 E-value=0.11 Score=47.61 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 301 DGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 301 ~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
++++++|||.+.++......++..|-+++--
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~ 206 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRLGENVTV 206 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhcCCCCEE
Confidence 4689999999999999888898888665433
No 418
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.48 E-value=0.059 Score=45.06 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
-|+++|+||+|||+|++++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998875
No 419
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.47 E-value=0.053 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 420
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=93.46 E-value=0.056 Score=45.49 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=17.8
Q ss_pred ceeeeCCCCChHHHHHHHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~ 260 (345)
+++++|++|+|||+|+..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 68999999999999996664
No 421
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.43 E-value=0.074 Score=46.44 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.-+.|+||+|+|||+|++.+.+..|.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 36899999999999999999887764
No 422
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.42 E-value=0.09 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.4
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
|.+.|.||+|||++++.+++.++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~ 25 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPN 25 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 568899999999999999998754
No 423
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.41 E-value=0.27 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.2
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..+.+.++|.||+|||+|+.++..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~ 195 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLG 195 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999998864
No 424
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.41 E-value=0.088 Score=47.16 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=26.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
..|.+.|++|+|||++++.+++.++-.++.+|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 36889999999999999999988776555554
No 425
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.39 E-value=0.055 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.9
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+++||++|++|+|||++++.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999999864
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.39 E-value=0.058 Score=47.91 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 37999999999999999999988753
No 427
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.36 E-value=0.053 Score=44.52 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.1
Q ss_pred eeeeCCCCChHHHHHHHHHhh
Q psy1366 242 LLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~ 262 (345)
|.|+|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999764
No 428
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.065 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998765
No 429
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.34 E-value=0.061 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.0
Q ss_pred eceeeeCCCCChHHHHHHHHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~ 260 (345)
--+.|+|++|+|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 368999999999999999975
No 430
>PRK13695 putative NTPase; Provisional
Probab=93.33 E-value=0.065 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+++|+|+||+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999976543
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.32 E-value=0.25 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
--++|+|++|+|||+++..++..+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999888765
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.32 E-value=0.33 Score=43.64 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.3
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
-++|.|++|.|||++++.++.
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 433
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.32 E-value=0.11 Score=43.26 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-|+++|+.++|||+|++.+.+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999987763
No 434
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=93.31 E-value=0.44 Score=41.58 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.5
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+|+|+|.||+|||+++..+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg 22 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILG 22 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhC
Confidence 799999999999999999874
No 435
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.31 E-value=0.065 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.|+++|++|+|||+|+..+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999988643
No 436
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.30 E-value=0.14 Score=48.28 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-++++||+|+|||.|+..+++.++..+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~~i 32 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNGEI 32 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCCcE
Confidence 689999999999999999999876543
No 437
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.30 E-value=0.12 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=22.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.|+|+.|++|+|||++++++....
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998876
No 438
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.27 E-value=0.19 Score=43.62 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.3
Q ss_pred eeeeCCCCChHHHHHHHHHh
Q psy1366 242 LLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+|+.|.|||+++|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999983
No 439
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.27 E-value=0.064 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999998875
No 440
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.065 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998765
No 441
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.23 E-value=0.11 Score=46.21 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=23.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----CCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----PRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~ 271 (345)
-+++.|+||+|||+++..++... .+.+|.+.
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 68999999999999988877543 23456654
No 442
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.22 E-value=0.093 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-+.|+|+||+|||+|+..++..
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999988743
No 443
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.22 E-value=0.1 Score=47.21 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHH-hhCC---CeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK-RMSP---RSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~-~~~~---~~~~~~~ 271 (345)
..+|+.|+||+|||.|+..++ +.+. +.+|++.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 489999999999999876543 3222 3556553
No 444
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.22 E-value=0.067 Score=44.85 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.0
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+++++|+||+|||+|++.+..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 445
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=93.20 E-value=0.33 Score=47.78 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=49.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-ccCcCCceEEEEeecCeeE--eeec-------------------
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV-GTTTAGLTVSALRENGEWH--LEAG------------------- 295 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~-~~~~~glt~~~~~~~~~~~--~~~G------------------- 295 (345)
..+.+.++|.||+|||+|+.++...- +. .+... +++..-.......++..+. -.||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~-~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEE-RV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC-ee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34789999999999999999886431 11 11111 1111111111111111222 1244
Q ss_pred --eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 296 --ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 296 --~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
++..||.-++++|--+.+...+...+..+.+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~ 282 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA 282 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc
Confidence 23457788899998888887766655555554
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.18 E-value=0.08 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-++|+||+|+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 688899999999999999987654
No 447
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.17 E-value=0.07 Score=44.51 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.++++|++|+|||+|++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988754
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.16 E-value=0.07 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999998763
No 449
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=93.14 E-value=0.075 Score=44.31 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++++++|+||+|||+|+..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 58999999999999999877643
No 450
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.13 E-value=0.063 Score=48.04 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.9
Q ss_pred eceeeeCCCCChHHHHHHHHH-hh----CCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK-RM----SPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~-~~----~~~~~~~~~ 271 (345)
.-+|+.|+||+|||.|+..++ +. -.+.+|++-
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 489999999999999876543 22 234556553
No 451
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.12 E-value=0.12 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=24.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGV 272 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~ 272 (345)
.-+++.|+||+|||+++..++... .+.+|++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 378999999999999988887522 345566544
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.11 E-value=0.068 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.++|+|+.|+|||+|++++...-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998643
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.10 E-value=0.35 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-.++|+|++|+|||+++..++..+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999888887654
No 454
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=93.09 E-value=0.65 Score=41.93 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+.|+|+||+|||+|++++....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999998654
No 455
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.09 E-value=0.18 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.-++++|+||+|||+|+-.++..
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999998888654
No 456
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=93.08 E-value=0.07 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.3
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|+++|++|+|||+|+..+..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 457
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.06 E-value=0.066 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
=+-|+||+|+|||+++|.+|-+-.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 466999999999999999998664
No 458
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.05 E-value=0.073 Score=46.78 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37999999999999999999988753
No 459
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.02 E-value=0.071 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 7999999999999999999988753
No 460
>PRK08356 hypothetical protein; Provisional
Probab=93.01 E-value=0.12 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.-++|.|+||+|||++++++.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 461
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.00 E-value=0.075 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.|.++|+||+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988743
No 462
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.98 E-value=0.15 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-++++.|++|+|||++++++...
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 39999999999999999999875
No 463
>KOG0741|consensus
Probab=92.97 E-value=0.042 Score=54.70 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=41.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSS 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk 312 (345)
..+||.||||+|||.||-.+|.-+.-++.-.-.+.+..|++-++.-. .+.| ..| ..+.-.++.+|++++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F-~DA---YkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIF-EDA---YKSPLSIIVVDDIER 609 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHH-HHh---hcCcceEEEEcchhh
Confidence 58999999999999999999987765543333333344554332100 0000 001 122345899999986
No 464
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=92.97 E-value=0.074 Score=44.69 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|.++|+||+|||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999753
No 465
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=92.97 E-value=0.078 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++++|+||+|||+|+..+...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998753
No 466
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.95 E-value=0.076 Score=46.94 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 37999999999999999999988753
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.94 E-value=0.084 Score=45.42 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=51.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCc--C--CceEEEEeecCee-----------Eeeece-----
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTT--A--GLTVSALRENGEW-----------HLEAGA----- 296 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~--~--glt~~~~~~~~~~-----------~~~~G~----- 296 (345)
-.+.++|++|+|||+|++.++.+.+. .+...|..... . .-.....-+...+ .+-.|.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 38999999999999999999988753 23333321100 0 0001111111100 011111
Q ss_pred ---eeecCCcEEEEcCCC-CCCHHhHHHHHHHHhC
Q psy1366 297 ---LVLSDGGVCCIDEFS-SIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 297 ---l~la~~gi~~IDEid-k~~~~~~~~l~eame~ 327 (345)
....+..++++||-. .++...+..+++.|.+
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 123567899999986 4788888888888864
No 468
>PLN02199 shikimate kinase
Probab=92.94 E-value=0.17 Score=47.34 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.+|+|+|.+|+|||++++.+++.+...++
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 39999999999999999999998776554
No 469
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.94 E-value=0.081 Score=46.79 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999999875
No 470
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=92.91 E-value=0.08 Score=44.47 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=19.7
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++++|+||+|||+|+..+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988864
No 471
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=92.91 E-value=0.073 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.|.++|+||+|||+|+.++...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999988643
No 472
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.91 E-value=0.087 Score=44.76 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=50.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCCceEE-EEeecCeeE--eeece--------eeecCCcEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAGLTVS-ALRENGEWH--LEAGA--------LVLSDGGVC 305 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~glt~~-~~~~~~~~~--~~~G~--------l~la~~gi~ 305 (345)
-.+.|+|++|+|||+|++.++.+.+. .++..|..... +... ..+..-.+. +-.|. ....+.-++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~--~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--ASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc--CCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 48999999999999999999988754 23333321110 0000 000000010 11121 122457899
Q ss_pred EEcCCCC-CCHHhHHHHHHHHh
Q psy1366 306 CIDEFSS-IKEHDRTSIHEAME 326 (345)
Q Consensus 306 ~IDEidk-~~~~~~~~l~eame 326 (345)
++||-.. ++...+..+.++|.
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHH
Confidence 9999764 78888888888774
No 473
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=92.91 E-value=0.25 Score=33.38 Aligned_cols=34 Identities=29% Similarity=0.657 Sum_probs=24.4
Q ss_pred EEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCCe
Q psy1366 41 REYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTNF 81 (345)
Q Consensus 41 ~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~f 81 (345)
-.|+|.+||+.|.+...+.+ ..+..|| .|++...
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~----~~~~~CP---~Cg~~~~ 37 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQKMSD----DPLATCP---ECGGEKL 37 (52)
T ss_pred EEEEeCCCCCEeEEEEecCC----CCCCCCC---CCCCCce
Confidence 36999999999887544321 4567897 6998654
No 474
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=92.90 E-value=0.06 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+++||.|.|||.+++++.-.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999997643
No 475
>PRK13975 thymidylate kinase; Provisional
Probab=92.89 E-value=0.085 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-|.+.|++|+|||++++.+++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998763
No 476
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.89 E-value=0.072 Score=47.34 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
--.-|+||+|+|||+++|.+-++-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 367899999999999999997754
No 477
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=92.87 E-value=0.077 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.++++|+||+|||+|+..+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998754
No 478
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=92.87 E-value=0.084 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|++|+|||+|++.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999987764
No 479
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=92.87 E-value=0.099 Score=45.14 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
-|+|-|++.+|||++++.+.+.++.+.+..+
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~ 33 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLS 33 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEe
Confidence 4899999999999999999999998765544
No 480
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.86 E-value=0.099 Score=54.36 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.-+.|+..++... -.+|+.||||||||+++-.+..
T Consensus 160 ~~Q~~Av~~~l~~~--------------~~~lI~GpPGTGKT~t~~~ii~ 195 (637)
T TIGR00376 160 ESQKEAVSFALSSK--------------DLFLIHGPPGTGKTRTLVELIR 195 (637)
T ss_pred HHHHHHHHHHhcCC--------------CeEEEEcCCCCCHHHHHHHHHH
Confidence 45566777766532 2789999999999987666543
No 481
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.09 Score=44.95 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=51.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCc---CCc--eEEEEeecCeeE--------eeece-------
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTT---AGL--TVSALRENGEWH--------LEAGA------- 296 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~---~gl--t~~~~~~~~~~~--------~~~G~------- 296 (345)
-.+.|+|++|+|||+|++.++.+.+. .++..|..-.. ..+ ..........+. +-.|.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 48999999999999999999998764 23333321100 000 011111110000 11111
Q ss_pred -eeecCCcEEEEcCCC-CCCHHhHHHHHHHHhC
Q psy1366 297 -LVLSDGGVCCIDEFS-SIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 297 -l~la~~gi~~IDEid-k~~~~~~~~l~eame~ 327 (345)
....+.-++++||=. .++...+..+.+.|.+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 112357899999975 5888888888888864
No 482
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.85 E-value=0.13 Score=44.46 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.8
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
|.|+|.||+|||++++.+++ .+-.++
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i 27 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE
Confidence 68999999999999999998 454444
No 483
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.84 E-value=0.09 Score=45.05 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=50.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC---c--eEEEEeecCeeE--------eeece--------
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG---L--TVSALRENGEWH--------LEAGA-------- 296 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g---l--t~~~~~~~~~~~--------~~~G~-------- 296 (345)
.+.|+|++|+|||+|++.++.+.+. .++..|....... + ..........+. +-.|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999988753 3443332111000 0 011111110000 11111
Q ss_pred eeecCCcEEEEcCCC-CCCHHhHHHHHHHHhC
Q psy1366 297 LVLSDGGVCCIDEFS-SIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 297 l~la~~gi~~IDEid-k~~~~~~~~l~eame~ 327 (345)
....+.-++++||-. .++...+..+.+.+.+
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 122467899999976 5788888888877753
No 484
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.84 E-value=0.12 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.++|+||+|+||+++++.+.+..|.
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~ 28 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPD 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 7999999999999999999988763
No 485
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=92.83 E-value=0.081 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.|+++|++|+|||+|++.+..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999988764
No 486
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=92.82 E-value=0.084 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.6
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.++++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999865553
No 487
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.81 E-value=0.067 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.2
Q ss_pred eeeeCCCCChHHHHHHHHHhhCC
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
|.+.|++|+|||++++.++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999886
No 488
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.80 E-value=0.084 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=22.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3799999999999999999998775
No 489
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.80 E-value=0.082 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998865
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.79 E-value=0.081 Score=46.94 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998875
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.77 E-value=0.13 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=18.4
Q ss_pred eceeeeCCCCChHHHHHHHHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~ 260 (345)
..+++.|+||+|||+|+..++
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 489999999999999988654
No 492
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=92.75 E-value=0.087 Score=44.62 Aligned_cols=21 Identities=48% Similarity=0.691 Sum_probs=18.9
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|+++|++|+|||+|++.+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988764
No 493
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=92.71 E-value=0.089 Score=44.56 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.9
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|++|+|||+|+..+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998864
No 494
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.70 E-value=0.093 Score=45.86 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|++|+|||+|++.++.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999999865
No 495
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.68 E-value=0.085 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
|++++|+||+|||+|++.++...+.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 9999999999999999999988764
No 496
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.67 E-value=0.09 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.5
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++++|++|+|||+|+.++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999988743
No 497
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.66 E-value=0.087 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999998865
No 498
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.66 E-value=0.087 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 699999999999999999998875
No 499
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.63 E-value=0.087 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7999999999999999999988753
No 500
>PRK10646 ADP-binding protein; Provisional
Probab=92.59 E-value=0.2 Score=42.28 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-|+|.||-|.|||+++|.+++.+.-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998863
Done!