Query psy1366
Match_columns 345
No_of_seqs 265 out of 2512
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:06:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 7.2E-62 2.5E-66 493.7 19.0 328 6-344 99-434 (595)
2 3f8t_A Predicted ATPase involv 100.0 4.7E-50 1.6E-54 388.3 18.7 241 64-344 87-339 (506)
3 1ltl_A DNA replication initiat 100.0 1.5E-37 5.1E-42 287.2 19.8 171 5-187 97-269 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 7.1E-35 2.4E-39 268.1 18.3 158 5-167 104-267 (268)
5 2r44_A Uncharacterized protein 99.6 2E-14 6.7E-19 135.2 12.2 118 198-332 19-140 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 6.7E-15 2.3E-19 145.8 8.2 129 198-344 14-150 (500)
7 1g8p_A Magnesium-chelatase 38 99.5 3E-14 1E-18 134.4 6.3 126 205-342 23-185 (350)
8 1um8_A ATP-dependent CLP prote 99.4 2.5E-13 8.5E-18 130.0 4.6 139 198-336 13-186 (376)
9 3k1j_A LON protease, ATP-depen 99.2 1.4E-11 4.7E-16 125.2 8.6 115 205-333 40-233 (604)
10 3n70_A Transport activator; si 99.2 9.5E-12 3.2E-16 103.0 5.2 76 240-328 25-103 (145)
11 3co5_A Putative two-component 99.2 2.3E-12 7.7E-17 106.6 0.6 75 240-328 28-102 (143)
12 3hws_A ATP-dependent CLP prote 99.1 9.4E-13 3.2E-17 125.4 -4.0 134 199-332 8-161 (363)
13 1ofh_A ATP-dependent HSL prote 99.1 4.4E-12 1.5E-16 117.2 0.4 132 198-331 7-158 (310)
14 1r6b_X CLPA protein; AAA+, N-t 99.1 1.7E-10 5.9E-15 120.1 9.2 125 198-333 450-589 (758)
15 3pfi_A Holliday junction ATP-d 99.1 7.8E-11 2.7E-15 110.6 5.1 110 205-332 28-137 (338)
16 4fcw_A Chaperone protein CLPB; 99.0 3.1E-11 1.1E-15 111.8 1.6 130 199-331 10-149 (311)
17 1ojl_A Transcriptional regulat 99.0 3.7E-10 1.3E-14 105.0 8.8 90 240-330 26-125 (304)
18 2bjv_A PSP operon transcriptio 99.0 1.6E-10 5.6E-15 104.8 6.2 89 240-330 30-129 (265)
19 3syl_A Protein CBBX; photosynt 99.0 6.4E-11 2.2E-15 109.7 1.6 124 198-328 23-166 (309)
20 3pvs_A Replication-associated 98.9 1.3E-10 4.5E-15 113.7 1.0 113 203-333 23-138 (447)
21 3pxi_A Negative regulator of g 98.9 4.1E-10 1.4E-14 117.3 3.9 121 202-332 487-610 (758)
22 1hqc_A RUVB; extended AAA-ATPa 98.9 3.4E-09 1.2E-13 98.5 9.4 108 205-332 11-121 (324)
23 1g41_A Heat shock protein HSLU 98.8 3.2E-09 1.1E-13 103.3 6.9 72 198-269 7-80 (444)
24 3m6a_A ATP-dependent protease 98.8 1.8E-09 6E-14 108.3 3.3 119 199-328 74-206 (543)
25 3dzd_A Transcriptional regulat 98.8 1.4E-09 4.9E-14 103.8 2.3 91 240-331 153-252 (368)
26 1ny5_A Transcriptional regulat 98.8 1.4E-09 4.7E-14 104.6 1.2 91 240-331 161-261 (387)
27 3vfd_A Spastin; ATPase, microt 98.7 5E-09 1.7E-13 100.5 2.8 115 205-326 114-243 (389)
28 1qvr_A CLPB protein; coiled co 98.7 5.1E-09 1.8E-13 110.4 3.1 121 205-331 557-690 (854)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.7 7.6E-09 2.6E-13 93.1 2.8 64 205-268 5-68 (262)
30 3eie_A Vacuolar protein sortin 98.6 2.3E-09 7.8E-14 100.3 -1.9 113 206-326 18-146 (322)
31 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.1E-08 3.7E-13 95.8 2.5 60 206-267 12-74 (322)
32 3b9p_A CG5977-PA, isoform A; A 98.6 8.9E-09 3E-13 94.7 1.8 118 205-327 20-150 (297)
33 1sxj_D Activator 1 41 kDa subu 98.6 6.6E-09 2.3E-13 97.6 1.0 109 204-328 35-160 (353)
34 2zan_A Vacuolar protein sortin 98.6 2.1E-08 7.2E-13 98.0 4.3 118 205-327 133-264 (444)
35 2qp9_X Vacuolar protein sortin 98.6 5.6E-09 1.9E-13 99.1 0.2 114 205-326 50-179 (355)
36 1iqp_A RFCS; clamp loader, ext 98.6 7.4E-09 2.5E-13 96.0 0.8 117 192-327 13-136 (327)
37 3uk6_A RUVB-like 2; hexameric 98.6 1.5E-08 5E-13 96.0 2.6 51 205-265 43-96 (368)
38 3u61_B DNA polymerase accessor 98.6 1.9E-08 6.4E-13 93.8 3.2 106 204-327 24-132 (324)
39 1sxj_C Activator 1 40 kDa subu 98.6 8.5E-09 2.9E-13 97.0 0.7 109 204-327 23-136 (340)
40 3h4m_A Proteasome-activating n 98.6 8.9E-09 3E-13 94.1 0.6 64 206-269 17-81 (285)
41 2chg_A Replication factor C sm 98.5 2E-08 6.9E-13 87.1 2.4 107 204-327 15-128 (226)
42 3d8b_A Fidgetin-like protein 1 98.5 1E-08 3.5E-13 97.3 -1.3 115 205-327 83-213 (357)
43 1jbk_A CLPB protein; beta barr 98.5 2.3E-07 7.8E-12 78.4 6.7 53 199-263 15-67 (195)
44 2r62_A Cell division protease 98.5 1.2E-08 3.9E-13 92.5 -1.6 105 206-316 11-118 (268)
45 2p65_A Hypothetical protein PF 98.5 8.9E-09 3E-13 87.1 -2.2 52 200-263 16-67 (187)
46 1in4_A RUVB, holliday junction 98.5 1.8E-07 6.1E-12 87.9 6.4 103 207-329 26-130 (334)
47 4b4t_J 26S protease regulatory 98.5 2.3E-08 7.9E-13 95.9 0.2 31 240-270 183-213 (405)
48 3t15_A Ribulose bisphosphate c 98.4 2.7E-08 9.1E-13 91.9 0.1 84 238-327 35-138 (293)
49 3cf0_A Transitional endoplasmi 98.4 2.9E-08 9.9E-13 91.9 -0.1 115 207-327 16-148 (301)
50 4b4t_L 26S protease subunit RP 98.4 4.3E-08 1.5E-12 95.2 1.0 31 240-270 216-246 (437)
51 2c9o_A RUVB-like 1; hexameric 98.4 2.9E-07 1E-11 90.1 6.3 52 203-264 34-88 (456)
52 2chq_A Replication factor C sm 98.4 3.8E-08 1.3E-12 90.8 -0.1 107 204-327 15-128 (319)
53 1njg_A DNA polymerase III subu 98.4 2.1E-07 7E-12 81.5 4.1 112 204-327 21-152 (250)
54 4b4t_I 26S protease regulatory 98.3 6.4E-08 2.2E-12 93.3 -0.0 31 240-270 217-247 (437)
55 1lv7_A FTSH; alpha/beta domain 98.3 1E-07 3.4E-12 85.8 0.9 62 205-268 11-74 (257)
56 1sxj_B Activator 1 37 kDa subu 98.3 7.8E-08 2.7E-12 88.8 0.1 108 204-327 19-133 (323)
57 4b4t_M 26S protease regulatory 98.3 6.7E-08 2.3E-12 93.7 -0.6 31 240-270 216-246 (434)
58 4b4t_H 26S protease regulatory 98.3 9.2E-08 3.1E-12 93.0 0.3 31 240-270 244-274 (467)
59 4b4t_K 26S protease regulatory 98.3 9.3E-08 3.2E-12 92.7 0.1 63 206-270 172-237 (428)
60 1jr3_A DNA polymerase III subu 98.3 5.6E-07 1.9E-11 84.9 5.3 112 204-327 14-145 (373)
61 3hu3_A Transitional endoplasmi 98.3 1.6E-07 5.3E-12 92.9 1.0 116 206-327 204-334 (489)
62 1sxj_A Activator 1 95 kDa subu 98.2 9.6E-07 3.3E-11 87.8 6.4 121 206-328 39-178 (516)
63 3bos_A Putative DNA replicatio 98.2 1.5E-06 5.1E-11 76.4 5.9 72 240-326 53-131 (242)
64 3pxg_A Negative regulator of g 98.2 6.1E-07 2.1E-11 88.2 3.5 101 206-332 180-294 (468)
65 2ce7_A Cell division protein F 98.2 2.5E-07 8.4E-12 91.0 0.0 110 206-326 16-147 (476)
66 1sxj_E Activator 1 40 kDa subu 98.1 3E-06 1E-10 79.5 7.1 48 205-264 13-62 (354)
67 2kjq_A DNAA-related protein; s 98.1 2.8E-06 9.4E-11 70.4 6.0 67 241-326 38-108 (149)
68 1d2n_A N-ethylmaleimide-sensit 98.1 1.4E-07 4.8E-12 85.7 -2.2 82 240-326 65-159 (272)
69 1r6b_X CLPA protein; AAA+, N-t 98.1 3E-06 1E-10 88.1 7.0 47 205-263 185-231 (758)
70 1qvr_A CLPB protein; coiled co 98.1 1E-06 3.4E-11 92.9 3.2 111 205-332 169-302 (854)
71 2gno_A DNA polymerase III, gam 98.1 2.6E-06 8.9E-11 79.0 5.6 100 210-327 1-108 (305)
72 3pxi_A Negative regulator of g 98.0 7.4E-07 2.5E-11 92.7 0.9 101 206-332 180-294 (758)
73 2dhr_A FTSH; AAA+ protein, hex 98.0 1.5E-06 5.2E-11 85.8 3.0 27 241-267 66-92 (499)
74 1a5t_A Delta prime, HOLB; zinc 98.0 1.9E-06 6.6E-11 80.8 3.1 106 211-328 7-135 (334)
75 1l8q_A Chromosomal replication 98.0 1.3E-05 4.4E-10 74.5 7.6 79 240-325 38-124 (324)
76 3cf2_A TER ATPase, transitiona 97.9 6.6E-07 2.2E-11 92.9 -1.9 111 207-326 478-609 (806)
77 1fnn_A CDC6P, cell division co 97.9 3.9E-06 1.3E-10 79.4 2.9 114 206-327 17-151 (389)
78 3te6_A Regulatory protein SIR3 97.9 5.3E-06 1.8E-10 77.3 3.2 24 240-263 46-69 (318)
79 3cf2_A TER ATPase, transitiona 97.9 6.7E-07 2.3E-11 92.9 -3.6 62 206-270 204-269 (806)
80 1ypw_A Transitional endoplasmi 97.7 6.3E-07 2.2E-11 93.8 -6.0 62 206-267 477-539 (806)
81 1ypw_A Transitional endoplasmi 97.7 3E-06 1E-10 88.7 -1.1 115 206-327 204-334 (806)
82 2v1u_A Cell division control p 97.7 1.9E-05 6.4E-10 74.4 4.4 50 206-263 19-68 (387)
83 3ec2_A DNA replication protein 97.7 8.1E-07 2.8E-11 75.4 -4.8 82 240-326 39-127 (180)
84 1tue_A Replication protein E1; 97.7 2.6E-05 8.7E-10 67.9 4.2 75 241-332 60-135 (212)
85 2z4s_A Chromosomal replication 97.6 3.1E-05 1E-09 75.4 3.8 80 240-326 131-221 (440)
86 4akg_A Glutathione S-transfera 97.5 0.00012 4.3E-09 84.5 8.4 100 214-337 634-740 (2695)
87 4akg_A Glutathione S-transfera 97.5 0.0002 6.9E-09 82.9 8.7 96 240-335 1268-1376(2695)
88 2x8a_A Nuclear valosin-contain 97.3 0.00011 3.8E-09 66.8 3.9 27 241-267 46-72 (274)
89 1u0j_A DNA replication protein 97.3 0.00054 1.8E-08 61.9 8.0 74 241-333 106-179 (267)
90 3vkg_A Dynein heavy chain, cyt 97.3 0.00023 7.7E-09 83.1 6.4 95 240-335 1305-1414(3245)
91 2qgz_A Helicase loader, putati 97.2 2.7E-05 9.3E-10 72.2 -2.3 25 240-264 153-177 (308)
92 1ixz_A ATP-dependent metallopr 97.1 0.00016 5.4E-09 64.5 2.6 26 241-266 51-76 (254)
93 1iy2_A ATP-dependent metallopr 97.0 0.00025 8.6E-09 64.2 2.7 26 241-266 75-100 (278)
94 2orw_A Thymidine kinase; TMTK, 96.9 0.00052 1.8E-08 58.5 3.7 28 302-329 77-104 (184)
95 3vkg_A Dynein heavy chain, cyt 96.8 0.0014 4.7E-08 76.7 7.3 90 213-326 592-681 (3245)
96 3upu_A ATP-dependent DNA helic 96.7 0.0037 1.3E-07 60.8 8.6 86 241-327 47-154 (459)
97 2qby_B CDC6 homolog 3, cell di 96.6 0.0015 5.2E-08 61.3 4.7 50 206-263 20-69 (384)
98 1w36_D RECD, exodeoxyribonucle 96.4 0.0039 1.3E-07 63.0 6.7 37 211-262 151-187 (608)
99 2w58_A DNAI, primosome compone 96.4 0.0011 3.9E-08 56.6 2.4 24 240-263 55-78 (202)
100 2qby_A CDC6 homolog 1, cell di 96.4 0.0022 7.5E-08 59.9 4.2 51 205-263 19-69 (386)
101 2r2a_A Uncharacterized protein 96.4 0.0039 1.4E-07 53.8 5.4 33 240-272 6-47 (199)
102 3e1s_A Exodeoxyribonuclease V, 96.3 0.0032 1.1E-07 63.2 4.8 88 241-328 206-306 (574)
103 1kag_A SKI, shikimate kinase I 96.2 0.0035 1.2E-07 52.0 4.0 28 241-268 6-33 (173)
104 1qhx_A CPT, protein (chloramph 96.2 0.0033 1.1E-07 52.3 3.8 28 241-268 5-32 (178)
105 3trf_A Shikimate kinase, SK; a 95.9 0.004 1.4E-07 52.2 3.1 30 240-269 6-35 (185)
106 1zuh_A Shikimate kinase; alpha 95.9 0.0044 1.5E-07 51.2 3.2 30 240-269 8-37 (168)
107 1via_A Shikimate kinase; struc 95.9 0.0046 1.6E-07 51.5 3.3 29 241-269 6-34 (175)
108 3kb2_A SPBC2 prophage-derived 95.8 0.0058 2E-07 50.3 3.5 28 241-268 3-30 (173)
109 3dl0_A Adenylate kinase; phosp 95.8 0.0054 1.9E-07 52.9 3.4 30 241-270 2-31 (216)
110 3vaa_A Shikimate kinase, SK; s 95.8 0.0051 1.7E-07 52.5 3.1 29 240-268 26-54 (199)
111 2qen_A Walker-type ATPase; unk 95.7 0.013 4.5E-07 53.8 6.1 51 206-271 12-62 (350)
112 2bdt_A BH3686; alpha-beta prot 95.7 0.007 2.4E-07 51.0 3.6 31 241-271 4-34 (189)
113 3iij_A Coilin-interacting nucl 95.6 0.0055 1.9E-07 51.2 2.9 31 240-270 12-42 (180)
114 1ye8_A Protein THEP1, hypothet 95.6 0.006 2.1E-07 51.5 3.0 24 241-264 2-25 (178)
115 3lw7_A Adenylate kinase relate 95.5 0.0076 2.6E-07 49.4 3.4 28 241-269 3-30 (179)
116 3tr0_A Guanylate kinase, GMP k 95.5 0.0097 3.3E-07 50.6 4.0 30 241-271 9-38 (205)
117 1w5s_A Origin recognition comp 95.5 0.013 4.5E-07 55.3 5.2 50 205-263 21-76 (412)
118 3fb4_A Adenylate kinase; psych 95.5 0.0066 2.2E-07 52.3 2.8 29 241-269 2-30 (216)
119 1y63_A LMAJ004144AAA protein; 95.4 0.009 3.1E-07 50.3 3.6 29 240-268 11-40 (184)
120 2iyv_A Shikimate kinase, SK; t 95.4 0.0079 2.7E-07 50.4 3.1 29 241-269 4-32 (184)
121 1e6c_A Shikimate kinase; phosp 95.4 0.009 3.1E-07 49.3 3.3 29 241-269 4-32 (173)
122 1ly1_A Polynucleotide kinase; 95.4 0.0077 2.6E-07 49.9 2.9 21 241-261 4-24 (181)
123 3sr0_A Adenylate kinase; phosp 95.3 0.0079 2.7E-07 52.1 2.9 30 241-270 2-31 (206)
124 3jvv_A Twitching mobility prot 95.3 0.018 6.3E-07 54.1 5.5 87 241-330 125-223 (356)
125 2vli_A Antibiotic resistance p 95.3 0.0089 3E-07 49.8 3.0 29 240-268 6-34 (183)
126 3cm0_A Adenylate kinase; ATP-b 95.3 0.0076 2.6E-07 50.5 2.5 29 240-268 5-33 (186)
127 1knq_A Gluconate kinase; ALFA/ 95.2 0.01 3.5E-07 49.2 3.2 27 241-267 10-36 (175)
128 1aky_A Adenylate kinase; ATP:A 95.2 0.0093 3.2E-07 51.6 3.0 30 240-269 5-34 (220)
129 1htw_A HI0065; nucleotide-bind 95.2 0.012 4E-07 48.8 3.4 24 241-264 35-58 (158)
130 1kgd_A CASK, peripheral plasma 95.2 0.011 3.8E-07 49.6 3.3 24 241-264 7-30 (180)
131 4eun_A Thermoresistant glucoki 95.2 0.011 3.7E-07 50.5 3.3 26 240-265 30-55 (200)
132 2pt5_A Shikimate kinase, SK; a 95.2 0.011 3.8E-07 48.6 3.2 28 241-268 2-29 (168)
133 3t61_A Gluconokinase; PSI-biol 95.2 0.012 3.9E-07 50.3 3.3 29 240-268 19-47 (202)
134 1zp6_A Hypothetical protein AT 95.1 0.0082 2.8E-07 50.5 2.3 25 240-264 10-34 (191)
135 2cdn_A Adenylate kinase; phosp 95.1 0.011 3.8E-07 50.3 3.2 30 240-269 21-50 (201)
136 1gvn_B Zeta; postsegregational 95.1 0.034 1.2E-06 50.5 6.5 32 240-271 34-66 (287)
137 1tev_A UMP-CMP kinase; ploop, 95.1 0.011 3.6E-07 49.7 2.9 29 240-268 4-32 (196)
138 2rhm_A Putative kinase; P-loop 95.1 0.01 3.5E-07 49.9 2.7 28 240-267 6-33 (193)
139 2ze6_A Isopentenyl transferase 95.1 0.014 4.6E-07 52.1 3.6 28 241-268 3-30 (253)
140 3lxx_A GTPase IMAP family memb 95.1 0.073 2.5E-06 46.5 8.4 26 238-263 28-53 (239)
141 1cke_A CK, MSSA, protein (cyti 95.0 0.011 3.7E-07 51.2 2.9 30 240-269 6-35 (227)
142 2qor_A Guanylate kinase; phosp 95.0 0.013 4.5E-07 50.1 3.3 26 240-265 13-38 (204)
143 2c95_A Adenylate kinase 1; tra 95.0 0.01 3.5E-07 50.0 2.5 29 240-268 10-38 (196)
144 2p5t_B PEZT; postsegregational 95.0 0.029 9.8E-07 49.9 5.5 26 240-265 33-58 (253)
145 2b8t_A Thymidine kinase; deoxy 94.9 0.0073 2.5E-07 53.1 1.5 35 302-337 90-124 (223)
146 1zd8_A GTP:AMP phosphotransfer 94.9 0.014 4.6E-07 50.9 3.2 29 240-268 8-36 (227)
147 3clv_A RAB5 protein, putative; 94.9 0.015 5.2E-07 48.6 3.4 26 237-262 5-30 (208)
148 1ak2_A Adenylate kinase isoenz 94.9 0.012 4.2E-07 51.5 2.9 31 240-270 17-47 (233)
149 1e4v_A Adenylate kinase; trans 94.9 0.011 3.7E-07 51.1 2.4 30 241-270 2-31 (214)
150 1ex7_A Guanylate kinase; subst 94.9 0.022 7.5E-07 48.5 4.2 27 241-267 3-29 (186)
151 3tlx_A Adenylate kinase 2; str 94.9 0.014 4.7E-07 51.7 3.1 31 240-270 30-60 (243)
152 1upt_A ARL1, ADP-ribosylation 94.9 0.015 5E-07 47.4 3.0 25 237-261 5-29 (171)
153 1kht_A Adenylate kinase; phosp 94.8 0.014 4.6E-07 48.9 2.9 25 240-264 4-28 (192)
154 2ewv_A Twitching motility prot 94.8 0.023 8E-07 53.7 4.7 24 241-264 138-161 (372)
155 3umf_A Adenylate kinase; rossm 94.8 0.012 4.2E-07 51.4 2.5 28 241-268 31-58 (217)
156 2bwj_A Adenylate kinase 5; pho 94.8 0.014 4.9E-07 49.2 2.9 28 241-268 14-41 (199)
157 1qf9_A UMP/CMP kinase, protein 94.8 0.014 5E-07 48.7 2.9 29 240-268 7-35 (194)
158 1nks_A Adenylate kinase; therm 94.8 0.013 4.3E-07 49.1 2.5 24 241-264 3-26 (194)
159 1ukz_A Uridylate kinase; trans 94.8 0.018 6.1E-07 49.0 3.5 30 240-269 16-45 (203)
160 2jaq_A Deoxyguanosine kinase; 94.8 0.017 5.8E-07 48.9 3.3 27 241-267 2-28 (205)
161 3be4_A Adenylate kinase; malar 94.7 0.013 4.5E-07 50.7 2.5 31 240-270 6-36 (217)
162 2xb4_A Adenylate kinase; ATP-b 94.7 0.015 5.1E-07 50.7 2.9 30 241-270 2-31 (223)
163 2j41_A Guanylate kinase; GMP, 94.7 0.016 5.4E-07 49.2 3.0 24 240-263 7-30 (207)
164 2bbw_A Adenylate kinase 4, AK4 94.6 0.014 4.7E-07 51.6 2.4 25 240-264 28-52 (246)
165 3tau_A Guanylate kinase, GMP k 94.6 0.017 5.8E-07 49.7 2.9 25 241-265 10-34 (208)
166 3nwj_A ATSK2; P loop, shikimat 94.6 0.02 6.7E-07 51.2 3.4 30 241-270 50-79 (250)
167 2plr_A DTMP kinase, probable t 94.6 0.015 5.2E-07 49.5 2.6 26 240-265 5-30 (213)
168 3uie_A Adenylyl-sulfate kinase 94.5 0.018 6.3E-07 49.0 3.0 25 240-264 26-50 (200)
169 4a74_A DNA repair and recombin 94.5 0.026 8.8E-07 48.7 3.9 23 241-263 27-49 (231)
170 3a00_A Guanylate kinase, GMP k 94.5 0.019 6.5E-07 48.4 2.9 24 241-264 3-26 (186)
171 2fna_A Conserved hypothetical 94.4 0.029 9.8E-07 51.6 4.3 50 206-271 13-63 (357)
172 3t1o_A Gliding protein MGLA; G 94.4 0.025 8.7E-07 47.1 3.6 28 237-264 12-39 (198)
173 3lxw_A GTPase IMAP family memb 94.4 0.13 4.5E-06 45.4 8.3 26 237-262 19-44 (247)
174 1zak_A Adenylate kinase; ATP:A 94.3 0.017 5.7E-07 50.1 2.2 26 240-265 6-31 (222)
175 1kao_A RAP2A; GTP-binding prot 94.3 0.025 8.5E-07 45.6 3.2 23 240-262 4-26 (167)
176 3q85_A GTP-binding protein REM 94.3 0.024 8.1E-07 46.1 3.0 22 240-261 3-24 (169)
177 2if2_A Dephospho-COA kinase; a 94.3 0.027 9.3E-07 47.9 3.5 26 241-267 3-28 (204)
178 1z2a_A RAS-related protein RAB 94.3 0.025 8.7E-07 45.7 3.1 24 239-262 5-28 (168)
179 2fz4_A DNA repair protein RAD2 94.2 0.073 2.5E-06 46.8 6.3 88 241-328 110-219 (237)
180 2z0h_A DTMP kinase, thymidylat 94.2 0.027 9.3E-07 47.3 3.3 28 241-268 2-32 (197)
181 2erx_A GTP-binding protein DI- 94.2 0.026 9E-07 45.7 3.0 22 240-261 4-25 (172)
182 1z08_A RAS-related protein RAB 94.2 0.029 9.9E-07 45.5 3.3 25 238-262 5-29 (170)
183 1znw_A Guanylate kinase, GMP k 94.2 0.027 9.2E-07 48.3 3.2 24 241-264 22-45 (207)
184 3r20_A Cytidylate kinase; stru 94.1 0.025 8.5E-07 50.0 2.9 31 240-270 10-40 (233)
185 4e22_A Cytidylate kinase; P-lo 94.1 0.03 1E-06 49.7 3.6 32 240-271 28-59 (252)
186 1ek0_A Protein (GTP-binding pr 94.1 0.03 1E-06 45.3 3.2 24 239-262 3-26 (170)
187 1r2q_A RAS-related protein RAB 94.1 0.031 1.1E-06 45.2 3.4 24 238-261 5-28 (170)
188 3tqc_A Pantothenate kinase; bi 94.1 0.038 1.3E-06 51.2 4.3 25 240-264 93-117 (321)
189 1lvg_A Guanylate kinase, GMP k 94.1 0.023 7.7E-07 48.6 2.6 24 241-264 6-29 (198)
190 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.032 1.1E-06 45.7 3.4 25 238-262 6-30 (177)
191 1z0j_A RAB-22, RAS-related pro 94.1 0.029 1E-06 45.4 3.2 25 239-263 6-30 (170)
192 1ky3_A GTP-binding protein YPT 94.1 0.029 1E-06 46.0 3.2 26 237-262 6-31 (182)
193 1jjv_A Dephospho-COA kinase; P 94.0 0.033 1.1E-06 47.4 3.5 26 241-267 4-29 (206)
194 2nzj_A GTP-binding protein REM 94.0 0.029 1E-06 45.7 3.0 23 240-262 5-27 (175)
195 3ney_A 55 kDa erythrocyte memb 94.0 0.038 1.3E-06 47.5 3.8 25 241-265 21-45 (197)
196 2cvh_A DNA repair and recombin 94.0 0.045 1.5E-06 46.7 4.3 31 241-271 22-53 (220)
197 1u8z_A RAS-related protein RAL 94.0 0.031 1.1E-06 45.0 3.1 23 240-262 5-27 (168)
198 1c1y_A RAS-related protein RAP 94.0 0.031 1.1E-06 45.1 3.1 22 240-261 4-25 (167)
199 2pbr_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 46.6 3.3 23 241-263 2-24 (195)
200 1m7b_A RND3/RHOE small GTP-bin 94.0 0.027 9.3E-07 46.8 2.8 24 239-262 7-30 (184)
201 3sop_A Neuronal-specific septi 93.9 0.027 9.3E-07 50.8 2.8 25 240-264 3-27 (270)
202 1s96_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 48.6 3.2 24 241-264 18-41 (219)
203 2hxs_A RAB-26, RAS-related pro 93.9 0.033 1.1E-06 45.6 3.1 24 239-262 6-29 (178)
204 2qt1_A Nicotinamide riboside k 93.9 0.035 1.2E-06 47.3 3.4 25 240-264 22-46 (207)
205 2f9l_A RAB11B, member RAS onco 93.9 0.031 1.1E-06 47.2 3.0 24 240-263 6-29 (199)
206 3oes_A GTPase rhebl1; small GT 93.9 0.029 9.8E-07 47.5 2.8 30 233-262 18-47 (201)
207 1z6g_A Guanylate kinase; struc 93.8 0.033 1.1E-06 48.3 3.2 29 241-269 25-53 (218)
208 1n0w_A DNA repair protein RAD5 93.8 0.041 1.4E-06 47.8 3.8 21 241-261 26-46 (243)
209 2ce2_X GTPase HRAS; signaling 93.8 0.03 1E-06 44.9 2.7 23 240-262 4-26 (166)
210 2xtp_A GTPase IMAP family memb 93.8 0.14 4.9E-06 45.1 7.5 23 239-261 22-44 (260)
211 2zej_A Dardarin, leucine-rich 93.8 0.03 1E-06 46.7 2.7 23 240-262 3-25 (184)
212 1r8s_A ADP-ribosylation factor 93.8 0.033 1.1E-06 45.0 2.9 22 241-262 2-23 (164)
213 1ltq_A Polynucleotide kinase; 93.8 0.047 1.6E-06 49.4 4.2 25 241-265 4-28 (301)
214 3c8u_A Fructokinase; YP_612366 93.8 0.029 1E-06 48.1 2.7 25 240-264 23-47 (208)
215 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.043 1.5E-06 48.9 3.9 23 240-262 5-27 (260)
216 1nrj_B SR-beta, signal recogni 93.7 0.033 1.1E-06 47.6 3.0 25 239-263 12-36 (218)
217 1zd9_A ADP-ribosylation factor 93.7 0.038 1.3E-06 46.2 3.3 28 235-262 18-45 (188)
218 2v54_A DTMP kinase, thymidylat 93.7 0.033 1.1E-06 47.1 3.0 25 240-264 5-29 (204)
219 3bc1_A RAS-related protein RAB 93.7 0.037 1.3E-06 45.8 3.2 24 238-261 10-33 (195)
220 2dyk_A GTP-binding protein; GT 93.7 0.037 1.2E-06 44.5 3.0 23 240-262 2-24 (161)
221 2yvu_A Probable adenylyl-sulfa 93.7 0.036 1.2E-06 46.5 3.0 25 240-264 14-38 (186)
222 3ake_A Cytidylate kinase; CMP 93.7 0.036 1.2E-06 47.0 3.1 30 241-270 4-33 (208)
223 2ehv_A Hypothetical protein PH 93.7 0.032 1.1E-06 48.7 2.8 20 241-260 32-51 (251)
224 1g16_A RAS-related protein SEC 93.7 0.032 1.1E-06 45.2 2.6 23 240-262 4-26 (170)
225 3q72_A GTP-binding protein RAD 93.6 0.028 9.6E-07 45.5 2.2 22 240-261 3-24 (166)
226 3ihw_A Centg3; RAS, centaurin, 93.6 0.04 1.4E-06 46.0 3.3 25 237-261 18-42 (184)
227 2wji_A Ferrous iron transport 93.6 0.038 1.3E-06 45.2 3.0 23 240-262 4-26 (165)
228 2wjg_A FEOB, ferrous iron tran 93.6 0.042 1.4E-06 45.5 3.3 24 239-262 7-30 (188)
229 4gp7_A Metallophosphoesterase; 93.6 0.028 9.7E-07 46.7 2.2 18 241-258 11-28 (171)
230 2g6b_A RAS-related protein RAB 93.6 0.041 1.4E-06 45.1 3.2 26 237-262 8-33 (180)
231 1z0f_A RAB14, member RAS oncog 93.6 0.039 1.3E-06 45.0 3.1 25 238-262 14-38 (179)
232 2gza_A Type IV secretion syste 93.6 0.041 1.4E-06 51.7 3.6 26 240-265 176-201 (361)
233 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.036 1.2E-06 47.6 3.0 22 241-262 25-46 (235)
234 3b85_A Phosphate starvation-in 93.5 0.051 1.8E-06 47.0 3.8 22 241-262 24-45 (208)
235 2wwf_A Thymidilate kinase, put 93.5 0.032 1.1E-06 47.6 2.5 24 240-263 11-34 (212)
236 1uf9_A TT1252 protein; P-loop, 93.5 0.045 1.5E-06 46.2 3.4 28 240-268 9-36 (203)
237 2vhj_A Ntpase P4, P4; non- hyd 93.5 0.042 1.4E-06 50.9 3.4 22 241-262 125-146 (331)
238 4dsu_A GTPase KRAS, isoform 2B 93.5 0.044 1.5E-06 45.2 3.3 24 239-262 4-27 (189)
239 2efe_B Small GTP-binding prote 93.5 0.043 1.5E-06 45.1 3.1 25 238-262 11-35 (181)
240 2oil_A CATX-8, RAS-related pro 93.4 0.043 1.5E-06 45.8 3.1 25 238-262 24-48 (193)
241 2iwr_A Centaurin gamma 1; ANK 93.4 0.035 1.2E-06 45.6 2.5 24 239-262 7-30 (178)
242 3kkq_A RAS-related protein M-R 93.4 0.044 1.5E-06 45.2 3.1 24 239-262 18-41 (183)
243 2lkc_A Translation initiation 93.4 0.042 1.4E-06 45.0 2.9 24 239-262 8-31 (178)
244 1x3s_A RAS-related protein RAB 93.4 0.056 1.9E-06 44.9 3.8 26 237-262 13-38 (195)
245 2gj8_A MNME, tRNA modification 93.4 0.035 1.2E-06 45.8 2.5 23 240-262 5-27 (172)
246 2bov_A RAla, RAS-related prote 93.4 0.045 1.5E-06 46.0 3.2 25 238-262 13-37 (206)
247 3tw8_B RAS-related protein RAB 93.4 0.043 1.5E-06 44.9 3.0 24 238-261 8-31 (181)
248 2ged_A SR-beta, signal recogni 93.4 0.043 1.5E-06 45.8 3.0 24 240-263 49-72 (193)
249 3reg_A RHO-like small GTPase; 93.4 0.047 1.6E-06 45.7 3.3 26 237-262 21-46 (194)
250 2y8e_A RAB-protein 6, GH09086P 93.3 0.042 1.4E-06 44.9 2.9 23 239-261 14-36 (179)
251 3crm_A TRNA delta(2)-isopenten 93.3 0.069 2.4E-06 49.4 4.5 28 241-268 7-34 (323)
252 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.046 1.6E-06 45.0 3.1 23 239-261 5-27 (186)
253 3asz_A Uridine kinase; cytidin 93.3 0.029 9.8E-07 48.0 1.8 25 240-264 7-31 (211)
254 3cph_A RAS-related protein SEC 93.3 0.044 1.5E-06 46.4 3.0 25 237-261 18-42 (213)
255 2fn4_A P23, RAS-related protei 93.3 0.042 1.4E-06 44.9 2.8 24 239-262 9-32 (181)
256 2pez_A Bifunctional 3'-phospho 93.3 0.046 1.6E-06 45.4 3.0 24 240-263 6-29 (179)
257 1oix_A RAS-related protein RAB 93.3 0.04 1.4E-06 46.3 2.7 26 239-264 29-54 (191)
258 3c5c_A RAS-like protein 12; GD 93.2 0.049 1.7E-06 45.5 3.2 26 237-262 19-44 (187)
259 2oap_1 GSPE-2, type II secreti 93.2 0.07 2.4E-06 52.6 4.7 26 240-265 261-286 (511)
260 2gf0_A GTP-binding protein DI- 93.2 0.042 1.5E-06 45.9 2.7 25 238-262 7-31 (199)
261 1nn5_A Similar to deoxythymidy 93.2 0.038 1.3E-06 47.1 2.5 24 240-263 10-33 (215)
262 1svm_A Large T antigen; AAA+ f 93.2 0.046 1.6E-06 51.8 3.2 28 240-267 170-197 (377)
263 1vg8_A RAS-related protein RAB 93.2 0.051 1.7E-06 45.8 3.2 25 238-262 7-31 (207)
264 1ksh_A ARF-like protein 2; sma 93.2 0.044 1.5E-06 45.4 2.7 23 239-261 18-40 (186)
265 1pzn_A RAD51, DNA repair and r 93.2 0.059 2E-06 50.4 3.9 34 240-273 132-175 (349)
266 2a9k_A RAS-related protein RAL 93.1 0.051 1.7E-06 44.7 3.1 24 239-262 18-41 (187)
267 3con_A GTPase NRAS; structural 93.1 0.053 1.8E-06 45.1 3.2 24 239-262 21-44 (190)
268 2atv_A RERG, RAS-like estrogen 93.1 0.05 1.7E-06 45.6 3.1 24 239-262 28-51 (196)
269 2onk_A Molybdate/tungstate ABC 93.1 0.047 1.6E-06 48.3 2.9 26 240-265 25-50 (240)
270 3t5g_A GTP-binding protein RHE 93.1 0.05 1.7E-06 44.8 2.9 24 238-261 5-28 (181)
271 1uj2_A Uridine-cytidine kinase 93.0 0.057 1.9E-06 47.8 3.4 26 240-265 23-48 (252)
272 2i3b_A HCR-ntpase, human cance 93.0 0.054 1.8E-06 46.1 3.1 23 241-263 3-25 (189)
273 1z06_A RAS-related protein RAB 93.0 0.055 1.9E-06 45.0 3.2 24 238-261 19-42 (189)
274 2r8r_A Sensor protein; KDPD, P 93.0 0.046 1.6E-06 48.0 2.6 26 237-262 4-29 (228)
275 3bwd_D RAC-like GTP-binding pr 93.0 0.053 1.8E-06 44.5 2.9 24 239-262 8-31 (182)
276 3q3j_B RHO-related GTP-binding 93.0 0.053 1.8E-06 46.5 3.0 26 237-262 25-50 (214)
277 2bme_A RAB4A, RAS-related prot 92.9 0.049 1.7E-06 45.0 2.7 25 238-262 9-33 (186)
278 3tif_A Uncharacterized ABC tra 92.9 0.042 1.4E-06 48.4 2.3 25 241-265 33-57 (235)
279 2pcj_A ABC transporter, lipopr 92.9 0.037 1.3E-06 48.3 2.0 25 241-265 32-56 (224)
280 1vht_A Dephospho-COA kinase; s 92.9 0.072 2.5E-06 45.8 3.8 28 240-268 5-32 (218)
281 3lnc_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 48.6 1.6 25 241-265 29-54 (231)
282 2grj_A Dephospho-COA kinase; T 92.9 0.06 2.1E-06 45.9 3.2 29 240-268 13-41 (192)
283 2h92_A Cytidylate kinase; ross 92.9 0.069 2.3E-06 45.8 3.7 32 240-271 4-35 (219)
284 3tkl_A RAS-related protein RAB 92.9 0.06 2E-06 44.9 3.2 25 238-262 15-39 (196)
285 2gf9_A RAS-related protein RAB 92.9 0.055 1.9E-06 45.0 3.0 24 239-262 22-45 (189)
286 2cxx_A Probable GTP-binding pr 92.9 0.042 1.4E-06 45.5 2.2 23 240-262 2-24 (190)
287 2fg5_A RAB-22B, RAS-related pr 92.9 0.052 1.8E-06 45.5 2.8 25 238-262 22-46 (192)
288 1vma_A Cell division protein F 92.8 0.37 1.3E-05 44.1 8.7 24 240-263 105-128 (306)
289 1m7g_A Adenylylsulfate kinase; 92.8 0.046 1.6E-06 46.9 2.4 25 240-264 26-50 (211)
290 2a5j_A RAS-related protein RAB 92.8 0.061 2.1E-06 44.9 3.1 26 237-262 19-44 (191)
291 1zbd_A Rabphilin-3A; G protein 92.8 0.054 1.9E-06 45.6 2.8 24 239-262 8-31 (203)
292 1zj6_A ADP-ribosylation factor 92.8 0.047 1.6E-06 45.4 2.4 22 240-261 17-38 (187)
293 2p5s_A RAS and EF-hand domain 92.8 0.059 2E-06 45.4 3.0 25 238-262 27-51 (199)
294 2q3h_A RAS homolog gene family 92.8 0.057 1.9E-06 45.4 2.9 25 237-261 18-42 (201)
295 2cjw_A GTP-binding protein GEM 92.7 0.062 2.1E-06 45.2 3.0 22 240-261 7-28 (192)
296 1m2o_B GTP-binding protein SAR 92.7 0.051 1.7E-06 45.6 2.5 22 240-261 24-45 (190)
297 1sgw_A Putative ABC transporte 92.7 0.049 1.7E-06 47.3 2.4 25 241-265 37-61 (214)
298 3b9q_A Chloroplast SRP recepto 92.7 0.19 6.3E-06 46.0 6.4 25 240-264 101-125 (302)
299 3a8t_A Adenylate isopentenyltr 92.7 0.1 3.6E-06 48.5 4.7 28 241-268 42-69 (339)
300 3dz8_A RAS-related protein RAB 92.6 0.055 1.9E-06 45.2 2.6 27 237-263 21-47 (191)
301 1moz_A ARL1, ADP-ribosylation 92.6 0.035 1.2E-06 45.8 1.3 21 240-260 19-39 (183)
302 4b3f_X DNA-binding protein smu 92.6 0.076 2.6E-06 53.8 4.1 36 212-261 192-228 (646)
303 2fh5_B SR-beta, signal recogni 92.6 0.061 2.1E-06 45.7 2.9 24 239-262 7-30 (214)
304 2bcg_Y Protein YP2, GTP-bindin 92.6 0.056 1.9E-06 45.7 2.6 24 239-262 8-31 (206)
305 1svi_A GTP-binding protein YSX 92.6 0.049 1.7E-06 45.5 2.2 24 239-262 23-46 (195)
306 1q3t_A Cytidylate kinase; nucl 92.6 0.059 2E-06 47.1 2.8 31 240-270 17-47 (236)
307 3kta_A Chromosome segregation 92.6 0.064 2.2E-06 44.6 2.9 24 241-264 28-51 (182)
308 2v9p_A Replication protein E1; 92.5 0.061 2.1E-06 49.4 3.0 23 241-263 128-150 (305)
309 1g6h_A High-affinity branched- 92.5 0.051 1.8E-06 48.5 2.3 25 241-265 35-59 (257)
310 1b0u_A Histidine permease; ABC 92.5 0.052 1.8E-06 48.6 2.4 25 241-265 34-58 (262)
311 2ga8_A Hypothetical 39.9 kDa p 92.5 0.063 2.2E-06 50.4 3.0 25 240-264 25-49 (359)
312 3vkw_A Replicase large subunit 92.5 0.019 6.4E-07 55.5 -0.6 91 241-332 163-265 (446)
313 2il1_A RAB12; G-protein, GDP, 92.5 0.063 2.2E-06 45.0 2.8 24 238-261 25-48 (192)
314 1fzq_A ADP-ribosylation factor 92.5 0.054 1.8E-06 45.0 2.3 23 240-262 17-39 (181)
315 2ff7_A Alpha-hemolysin translo 92.4 0.053 1.8E-06 48.1 2.3 25 241-265 37-61 (247)
316 2b6h_A ADP-ribosylation factor 92.4 0.053 1.8E-06 45.6 2.2 22 239-260 29-50 (192)
317 3llu_A RAS-related GTP-binding 92.4 0.053 1.8E-06 45.6 2.2 26 238-263 19-44 (196)
318 2f7s_A C25KG, RAS-related prot 92.4 0.071 2.4E-06 45.4 3.1 25 238-262 24-48 (217)
319 3cbq_A GTP-binding protein REM 92.4 0.056 1.9E-06 45.7 2.3 23 238-260 22-44 (195)
320 2eyu_A Twitching motility prot 92.3 0.068 2.3E-06 47.9 2.9 24 241-264 27-50 (261)
321 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.089 3E-06 48.8 3.8 25 241-265 173-197 (330)
322 1nij_A Hypothetical protein YJ 92.3 0.23 8E-06 45.6 6.7 23 241-263 6-28 (318)
323 1mv5_A LMRA, multidrug resista 92.3 0.058 2E-06 47.7 2.4 31 241-271 30-63 (243)
324 2j0v_A RAC-like GTP-binding pr 92.3 0.081 2.8E-06 44.9 3.3 25 238-262 8-32 (212)
325 2h17_A ADP-ribosylation factor 92.3 0.052 1.8E-06 44.9 2.0 25 238-262 20-44 (181)
326 2pze_A Cystic fibrosis transme 92.3 0.058 2E-06 47.3 2.4 25 241-265 36-60 (229)
327 2qi9_C Vitamin B12 import ATP- 92.3 0.058 2E-06 48.0 2.4 25 241-265 28-52 (249)
328 2qmh_A HPR kinase/phosphorylas 92.3 0.069 2.3E-06 46.0 2.7 25 240-264 35-59 (205)
329 2fu5_C RAS-related protein RAB 92.3 0.042 1.5E-06 45.3 1.4 23 239-261 8-30 (183)
330 1ji0_A ABC transporter; ATP bi 92.3 0.058 2E-06 47.6 2.3 25 241-265 34-58 (240)
331 2olj_A Amino acid ABC transpor 92.3 0.059 2E-06 48.4 2.4 31 241-271 52-85 (263)
332 3gfo_A Cobalt import ATP-bindi 92.2 0.059 2E-06 48.7 2.4 31 241-271 36-69 (275)
333 1gwn_A RHO-related GTP-binding 92.2 0.069 2.3E-06 45.6 2.7 24 239-262 28-51 (205)
334 2cbz_A Multidrug resistance-as 92.2 0.047 1.6E-06 48.1 1.7 25 241-265 33-57 (237)
335 1w4r_A Thymidine kinase; type 92.2 0.036 1.2E-06 47.5 0.9 92 241-339 22-127 (195)
336 3pqc_A Probable GTP-binding pr 92.2 0.064 2.2E-06 44.5 2.4 24 239-262 23-46 (195)
337 2gco_A H9, RHO-related GTP-bin 92.1 0.093 3.2E-06 44.3 3.4 25 238-262 24-48 (201)
338 2dr3_A UPF0273 protein PH0284; 92.1 0.066 2.2E-06 46.5 2.5 32 241-272 25-60 (247)
339 2ew1_A RAS-related protein RAB 92.1 0.072 2.5E-06 45.3 2.7 24 239-262 26-49 (201)
340 1vpl_A ABC transporter, ATP-bi 92.1 0.063 2.1E-06 48.0 2.4 25 241-265 43-67 (256)
341 2hjg_A GTP-binding protein ENG 92.1 0.64 2.2E-05 44.5 9.7 24 239-262 175-198 (436)
342 2o52_A RAS-related protein RAB 92.1 0.075 2.6E-06 44.9 2.8 25 237-261 23-47 (200)
343 2ixe_A Antigen peptide transpo 92.0 0.063 2.2E-06 48.4 2.3 25 241-265 47-71 (271)
344 2atx_A Small GTP binding prote 92.0 0.085 2.9E-06 44.0 3.0 26 237-262 16-41 (194)
345 2fv8_A H6, RHO-related GTP-bin 92.0 0.077 2.6E-06 45.0 2.8 24 239-262 25-48 (207)
346 2nq2_C Hypothetical ABC transp 92.0 0.066 2.2E-06 47.7 2.4 25 241-265 33-57 (253)
347 4bas_A ADP-ribosylation factor 92.0 0.081 2.8E-06 44.2 2.9 25 237-261 15-39 (199)
348 2ihy_A ABC transporter, ATP-bi 92.0 0.066 2.2E-06 48.5 2.4 31 241-271 49-82 (279)
349 2h57_A ADP-ribosylation factor 92.0 0.057 2E-06 45.0 1.9 25 238-262 20-44 (190)
350 2jeo_A Uridine-cytidine kinase 91.9 0.088 3E-06 46.3 3.2 25 240-264 26-50 (245)
351 1cr0_A DNA primase/helicase; R 91.9 0.071 2.4E-06 48.2 2.6 23 241-263 37-59 (296)
352 2j1l_A RHO-related GTP-binding 91.9 0.076 2.6E-06 45.4 2.7 23 239-261 34-56 (214)
353 1lw7_A Transcriptional regulat 91.9 0.094 3.2E-06 49.2 3.5 26 240-265 171-196 (365)
354 3io5_A Recombination and repai 91.9 0.13 4.6E-06 47.5 4.4 36 237-274 28-69 (333)
355 4g1u_C Hemin import ATP-bindin 91.9 0.064 2.2E-06 48.2 2.2 25 241-265 39-63 (266)
356 4eaq_A DTMP kinase, thymidylat 91.9 0.073 2.5E-06 46.6 2.5 25 240-264 27-51 (229)
357 2yz2_A Putative ABC transporte 91.9 0.068 2.3E-06 48.0 2.3 25 241-265 35-59 (266)
358 1xx6_A Thymidine kinase; NESG, 91.8 0.22 7.4E-06 42.4 5.4 27 302-328 82-108 (191)
359 2hup_A RAS-related protein RAB 91.8 0.084 2.9E-06 44.6 2.8 24 239-262 29-52 (201)
360 1tq4_A IIGP1, interferon-induc 91.8 0.15 5.2E-06 48.8 4.8 25 240-264 70-94 (413)
361 3foz_A TRNA delta(2)-isopenten 91.8 0.15 5.3E-06 46.8 4.6 27 241-267 12-38 (316)
362 4gzl_A RAS-related C3 botulinu 91.7 0.082 2.8E-06 44.8 2.6 24 239-262 30-53 (204)
363 3cpj_B GTP-binding protein YPT 91.7 0.095 3.3E-06 45.0 3.0 25 238-262 12-36 (223)
364 2gk6_A Regulator of nonsense t 91.7 0.13 4.4E-06 51.9 4.5 35 212-261 183-217 (624)
365 2ghi_A Transport protein; mult 91.6 0.071 2.4E-06 47.7 2.2 24 241-264 48-71 (260)
366 3lda_A DNA repair protein RAD5 91.6 0.16 5.4E-06 48.5 4.8 20 241-260 180-199 (400)
367 1gtv_A TMK, thymidylate kinase 91.6 0.037 1.3E-06 47.2 0.3 24 241-264 2-25 (214)
368 2qnr_A Septin-2, protein NEDD5 91.6 0.067 2.3E-06 48.9 2.0 23 240-262 19-41 (301)
369 2g3y_A GTP-binding protein GEM 91.6 0.1 3.5E-06 45.0 3.1 24 238-261 36-59 (211)
370 2x77_A ADP-ribosylation factor 91.5 0.054 1.8E-06 45.1 1.2 21 240-260 23-43 (189)
371 4dkx_A RAS-related protein RAB 91.5 0.1 3.4E-06 45.3 3.0 22 240-261 14-35 (216)
372 1nlf_A Regulatory protein REPA 91.5 0.077 2.6E-06 47.6 2.3 22 241-262 32-53 (279)
373 1rz3_A Hypothetical protein rb 91.5 0.089 3.1E-06 44.8 2.6 24 240-263 23-46 (201)
374 1z47_A CYSA, putative ABC-tran 91.5 0.09 3.1E-06 49.3 2.9 25 241-265 43-67 (355)
375 3a1s_A Iron(II) transport prot 91.5 0.1 3.5E-06 46.5 3.1 23 239-261 5-27 (258)
376 2zts_A Putative uncharacterize 91.5 0.092 3.2E-06 45.6 2.8 21 240-260 31-51 (251)
377 2z43_A DNA repair and recombin 91.5 0.18 6.2E-06 46.4 4.9 23 241-263 109-131 (324)
378 2yyz_A Sugar ABC transporter, 91.3 0.097 3.3E-06 49.2 2.9 25 241-265 31-55 (359)
379 2it1_A 362AA long hypothetical 91.3 0.099 3.4E-06 49.2 2.9 25 241-265 31-55 (362)
380 1z6t_A APAF-1, apoptotic prote 91.3 0.19 6.6E-06 49.9 5.2 46 205-260 123-168 (591)
381 3d31_A Sulfate/molybdate ABC t 91.3 0.088 3E-06 49.3 2.6 25 241-265 28-52 (348)
382 1mky_A Probable GTP-binding pr 91.3 0.54 1.8E-05 45.1 8.2 24 239-262 180-203 (439)
383 1v5w_A DMC1, meiotic recombina 91.3 0.15 5E-06 47.5 4.1 22 241-262 124-145 (343)
384 1v43_A Sugar-binding transport 91.3 0.1 3.4E-06 49.4 2.9 25 241-265 39-63 (372)
385 3fvq_A Fe(3+) IONS import ATP- 91.3 0.088 3E-06 49.5 2.5 25 241-265 32-56 (359)
386 3exa_A TRNA delta(2)-isopenten 91.2 0.16 5.4E-06 46.8 4.1 27 241-267 5-31 (322)
387 1f6b_A SAR1; gtpases, N-termin 91.2 0.076 2.6E-06 44.9 1.9 22 240-261 26-47 (198)
388 3rlf_A Maltose/maltodextrin im 91.2 0.1 3.5E-06 49.4 2.9 25 241-265 31-55 (381)
389 3aez_A Pantothenate kinase; tr 91.2 0.11 3.6E-06 47.9 3.0 25 240-264 91-115 (312)
390 2yc2_C IFT27, small RAB-relate 91.2 0.056 1.9E-06 45.4 1.0 26 237-262 18-43 (208)
391 3e2i_A Thymidine kinase; Zn-bi 91.2 0.12 4E-06 45.1 3.0 97 238-340 28-139 (219)
392 3d3q_A TRNA delta(2)-isopenten 91.2 0.15 5.1E-06 47.5 4.0 26 241-266 9-34 (340)
393 2wjy_A Regulator of nonsense t 91.1 0.14 4.7E-06 53.4 4.0 35 212-261 359-393 (800)
394 1g29_1 MALK, maltose transport 91.1 0.1 3.6E-06 49.2 2.9 25 241-265 31-55 (372)
395 3r7w_A Gtpase1, GTP-binding pr 91.0 0.12 4E-06 47.3 3.1 24 239-262 3-26 (307)
396 2d2e_A SUFC protein; ABC-ATPas 91.0 0.11 3.6E-06 46.2 2.7 22 241-262 31-52 (250)
397 3k53_A Ferrous iron transport 91.0 0.099 3.4E-06 46.7 2.5 23 240-262 4-26 (271)
398 2a5y_B CED-4; apoptosis; HET: 91.0 0.21 7.2E-06 49.5 5.1 46 207-261 129-174 (549)
399 2qm8_A GTPase/ATPase; G protei 90.9 0.1 3.6E-06 48.5 2.6 24 240-263 56-79 (337)
400 3hr8_A Protein RECA; alpha and 90.9 0.1 3.6E-06 48.9 2.6 34 240-273 62-99 (356)
401 2zu0_C Probable ATP-dependent 90.9 0.11 3.9E-06 46.5 2.8 23 241-263 48-70 (267)
402 2zr9_A Protein RECA, recombina 90.8 0.13 4.5E-06 48.0 3.3 32 241-272 63-98 (349)
403 1p9r_A General secretion pathw 90.8 0.11 3.6E-06 50.0 2.6 24 241-264 169-192 (418)
404 2qag_B Septin-6, protein NEDD5 90.8 0.092 3.1E-06 50.5 2.2 22 241-262 44-65 (427)
405 3zvl_A Bifunctional polynucleo 90.7 0.1 3.5E-06 50.0 2.4 25 240-264 259-283 (416)
406 3t5d_A Septin-7; GTP-binding p 90.7 0.11 3.7E-06 46.5 2.5 22 239-260 8-29 (274)
407 1pui_A ENGB, probable GTP-bind 90.7 0.064 2.2E-06 45.4 0.9 23 240-262 27-49 (210)
408 2qu8_A Putative nucleolar GTP- 90.6 0.12 4.2E-06 44.5 2.7 22 240-261 30-51 (228)
409 1sq5_A Pantothenate kinase; P- 90.6 0.1 3.4E-06 47.8 2.2 25 240-264 81-105 (308)
410 1oxx_K GLCV, glucose, ABC tran 90.6 0.092 3.1E-06 49.2 1.9 25 241-265 33-57 (353)
411 2f6r_A COA synthase, bifunctio 90.5 0.12 4.1E-06 46.7 2.6 23 240-262 76-98 (281)
412 2qag_C Septin-7; cell cycle, c 90.5 0.11 3.8E-06 49.9 2.5 24 240-263 32-55 (418)
413 4ag6_A VIRB4 ATPase, type IV s 90.4 0.14 4.7E-06 48.4 3.0 25 238-262 34-58 (392)
414 1rj9_A FTSY, signal recognitio 90.4 0.14 4.8E-06 46.9 3.0 24 241-264 104-127 (304)
415 2pjz_A Hypothetical protein ST 90.3 0.11 3.7E-06 46.6 2.1 24 241-264 32-55 (263)
416 3b1v_A Ferrous iron uptake tra 90.3 0.14 4.9E-06 46.0 2.9 23 240-262 4-26 (272)
417 2i1q_A DNA repair and recombin 90.2 0.26 8.9E-06 45.1 4.7 23 240-262 99-121 (322)
418 2hf9_A Probable hydrogenase ni 90.1 0.14 4.8E-06 43.9 2.6 23 240-262 39-61 (226)
419 2bbs_A Cystic fibrosis transme 90.1 0.11 3.6E-06 47.4 1.9 25 241-265 66-90 (290)
420 3e70_C DPA, signal recognition 89.8 0.17 5.8E-06 46.9 3.0 25 240-264 130-154 (328)
421 1jr3_D DNA polymerase III, del 89.8 0.092 3.1E-06 48.6 1.2 82 240-332 19-111 (343)
422 3th5_A RAS-related C3 botulinu 89.3 0.062 2.1E-06 45.4 0.0 23 239-261 30-52 (204)
423 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.17 5.8E-06 41.1 2.6 23 241-263 25-47 (149)
424 2f1r_A Molybdopterin-guanine d 89.7 0.12 4E-06 43.3 1.6 24 241-264 4-27 (171)
425 4dcu_A GTP-binding protein ENG 89.7 0.76 2.6E-05 44.3 7.7 89 238-328 194-306 (456)
426 3gmt_A Adenylate kinase; ssgci 89.6 0.14 4.6E-06 45.1 2.1 31 240-270 9-39 (230)
427 3i8s_A Ferrous iron transport 89.5 0.16 5.3E-06 45.6 2.5 23 240-262 4-26 (274)
428 3tui_C Methionine import ATP-b 89.5 0.17 6E-06 47.6 2.9 31 241-271 56-89 (366)
429 3nh6_A ATP-binding cassette SU 89.5 0.13 4.4E-06 47.3 1.9 25 241-265 82-106 (306)
430 1odf_A YGR205W, hypothetical 3 89.5 0.15 5.2E-06 46.3 2.4 25 240-264 32-56 (290)
431 1wf3_A GTP-binding protein; GT 89.5 0.9 3.1E-05 41.3 7.6 21 241-261 9-29 (301)
432 3gd7_A Fusion complex of cysti 89.4 0.12 4.3E-06 49.0 1.8 24 241-264 49-72 (390)
433 1u0l_A Probable GTPase ENGC; p 89.3 0.16 5.3E-06 46.4 2.4 25 241-265 171-195 (301)
434 1bif_A 6-phosphofructo-2-kinas 89.3 0.19 6.5E-06 48.8 3.1 24 240-263 40-63 (469)
435 3tqf_A HPR(Ser) kinase; transf 89.3 0.18 6.1E-06 42.4 2.5 23 240-262 17-39 (181)
436 2wsm_A Hydrogenase expression/ 89.3 0.18 6.1E-06 43.0 2.6 23 240-262 31-53 (221)
437 2xzl_A ATP-dependent helicase 89.3 0.22 7.4E-06 51.9 3.7 20 241-260 377-396 (802)
438 1u94_A RECA protein, recombina 89.2 0.25 8.6E-06 46.3 3.8 31 241-271 65-99 (356)
439 1c9k_A COBU, adenosylcobinamid 89.1 0.24 8.3E-06 41.7 3.2 29 242-270 2-30 (180)
440 1h65_A Chloroplast outer envel 89.1 0.18 6.3E-06 44.9 2.6 23 239-261 39-61 (270)
441 1np6_A Molybdopterin-guanine d 89.1 0.23 7.7E-06 41.6 3.0 23 241-263 8-30 (174)
442 2gmg_A Hypothetical protein PF 89.1 0.14 4.8E-06 38.9 1.5 32 38-80 63-94 (105)
443 4dhe_A Probable GTP-binding pr 89.0 0.12 4.1E-06 44.1 1.3 23 240-262 30-52 (223)
444 3gj0_A GTP-binding nuclear pro 88.9 0.12 4.2E-06 44.2 1.3 25 238-262 14-39 (221)
445 2rcn_A Probable GTPase ENGC; Y 88.9 0.29 1E-05 45.9 4.0 24 241-264 217-240 (358)
446 3cmw_A Protein RECA, recombina 88.9 0.23 7.8E-06 55.6 3.7 32 241-272 1084-1119(1706)
447 1zu4_A FTSY; GTPase, signal re 88.9 0.51 1.8E-05 43.4 5.6 24 240-263 106-129 (320)
448 2qag_A Septin-2, protein NEDD5 88.9 0.19 6.6E-06 47.1 2.7 22 240-261 38-59 (361)
449 2yv5_A YJEQ protein; hydrolase 88.9 0.22 7.4E-06 45.5 3.0 23 241-264 167-189 (302)
450 1xjc_A MOBB protein homolog; s 88.8 0.2 6.7E-06 41.9 2.4 23 241-263 6-28 (169)
451 2obl_A ESCN; ATPase, hydrolase 88.8 0.27 9.4E-06 45.8 3.7 25 241-265 73-97 (347)
452 2npi_A Protein CLP1; CLP1-PCF1 88.8 0.19 6.3E-06 48.9 2.6 24 241-264 140-163 (460)
453 4djt_A GTP-binding nuclear pro 88.7 0.19 6.4E-06 42.7 2.3 24 238-261 10-33 (218)
454 3iby_A Ferrous iron transport 88.7 0.18 6.3E-06 44.8 2.3 22 241-262 3-24 (256)
455 2og2_A Putative signal recogni 88.6 0.23 7.7E-06 46.7 3.0 25 240-264 158-182 (359)
456 3cmu_A Protein RECA, recombina 88.6 0.28 9.5E-06 55.7 4.2 33 240-272 1428-1464(2050)
457 2vp4_A Deoxynucleoside kinase; 88.6 0.26 8.8E-06 42.8 3.2 31 240-271 21-51 (230)
458 1tf7_A KAIC; homohexamer, hexa 88.6 0.18 6.3E-06 49.6 2.5 33 241-273 41-78 (525)
459 2ocp_A DGK, deoxyguanosine kin 88.5 0.31 1.1E-05 42.5 3.7 26 240-265 3-28 (241)
460 3eph_A TRNA isopentenyltransfe 88.5 0.3 1E-05 46.5 3.7 27 241-267 4-30 (409)
461 3fdi_A Uncharacterized protein 88.4 0.31 1.1E-05 41.6 3.5 29 240-268 7-35 (201)
462 1qhl_A Protein (cell division 88.4 0.11 3.7E-06 45.6 0.6 24 241-264 29-52 (227)
463 2yhs_A FTSY, cell division pro 88.2 0.25 8.4E-06 48.4 3.0 24 240-263 294-317 (503)
464 2dpy_A FLII, flagellum-specifi 88.2 0.25 8.5E-06 47.7 3.0 25 241-265 159-183 (438)
465 2www_A Methylmalonic aciduria 88.2 0.27 9.2E-06 45.8 3.2 23 240-262 75-97 (349)
466 2axn_A 6-phosphofructo-2-kinas 88.1 0.21 7.1E-06 49.3 2.4 24 240-263 36-59 (520)
467 2qtf_A Protein HFLX, GTP-bindi 88.0 0.23 7.8E-06 46.7 2.6 26 237-262 176-202 (364)
468 3iev_A GTP-binding protein ERA 88.0 1.6 5.6E-05 39.6 8.3 22 240-261 11-32 (308)
469 2v6i_A RNA helicase; membrane, 88.0 1.5 5E-05 41.9 8.4 27 299-325 91-120 (431)
470 3bh0_A DNAB-like replicative h 87.9 0.25 8.7E-06 45.2 2.8 21 241-261 70-90 (315)
471 1p5z_B DCK, deoxycytidine kina 87.8 0.23 7.9E-06 44.0 2.4 26 240-265 25-50 (263)
472 2orv_A Thymidine kinase; TP4A 87.8 0.71 2.4E-05 40.5 5.4 36 302-339 91-126 (234)
473 3def_A T7I23.11 protein; chlor 87.7 0.26 9E-06 43.7 2.7 24 239-262 36-59 (262)
474 1ega_A Protein (GTP-binding pr 87.7 0.26 8.9E-06 44.9 2.7 22 241-262 10-31 (301)
475 3cr8_A Sulfate adenylyltranfer 87.6 0.23 7.8E-06 49.4 2.4 25 240-264 370-394 (552)
476 3gee_A MNME, tRNA modification 87.3 0.53 1.8E-05 45.8 4.8 26 236-261 230-255 (476)
477 3geh_A MNME, tRNA modification 87.2 0.51 1.8E-05 45.8 4.6 28 235-262 220-247 (462)
478 2px0_A Flagellar biosynthesis 87.2 0.23 7.9E-06 45.2 2.0 23 241-263 107-129 (296)
479 1g8f_A Sulfate adenylyltransfe 87.0 0.55 1.9E-05 46.2 4.7 26 240-265 396-421 (511)
480 2aka_B Dynamin-1; fusion prote 86.7 0.26 9E-06 44.2 2.1 23 240-262 27-49 (299)
481 1xp8_A RECA protein, recombina 86.6 0.41 1.4E-05 45.0 3.4 32 241-272 76-111 (366)
482 1yqt_A RNAse L inhibitor; ATP- 86.5 0.33 1.1E-05 48.0 2.9 24 241-264 49-72 (538)
483 3qks_A DNA double-strand break 86.5 0.3 1E-05 41.7 2.3 23 241-263 25-47 (203)
484 1x6v_B Bifunctional 3'-phospho 86.3 0.4 1.4E-05 48.4 3.3 24 240-263 53-76 (630)
485 1tf7_A KAIC; homohexamer, hexa 86.3 0.38 1.3E-05 47.3 3.2 25 240-264 282-306 (525)
486 3euj_A Chromosome partition pr 86.2 0.34 1.1E-05 47.3 2.7 25 241-265 31-55 (483)
487 4edh_A DTMP kinase, thymidylat 86.2 0.33 1.1E-05 41.9 2.4 25 240-264 7-31 (213)
488 3o47_A ADP-ribosylation factor 86.2 0.26 8.9E-06 45.5 1.8 24 238-261 164-187 (329)
489 3cnl_A YLQF, putative uncharac 86.0 0.33 1.1E-05 43.3 2.4 23 240-262 100-122 (262)
490 1yks_A Genome polyprotein [con 86.0 1.4 4.9E-05 42.1 7.1 16 240-255 9-24 (440)
491 2ohf_A Protein OLA1, GTP-bindi 86.0 0.38 1.3E-05 45.7 2.9 25 238-262 21-45 (396)
492 1ni3_A YCHF GTPase, YCHF GTP-b 86.0 0.36 1.2E-05 45.9 2.7 23 239-261 20-42 (392)
493 2wkq_A NPH1-1, RAS-related C3 85.9 0.33 1.1E-05 44.0 2.4 22 240-261 156-177 (332)
494 3l0i_B RAS-related protein RAB 85.9 0.083 2.8E-06 44.5 -1.6 23 238-260 32-54 (199)
495 2r6a_A DNAB helicase, replicat 85.8 0.38 1.3E-05 46.4 2.9 22 241-262 205-226 (454)
496 2p67_A LAO/AO transport system 85.7 0.33 1.1E-05 45.0 2.3 24 240-263 57-80 (341)
497 1t9h_A YLOQ, probable GTPase E 85.7 0.18 6.2E-06 46.3 0.5 23 241-263 175-197 (307)
498 1puj_A YLQF, conserved hypothe 85.7 0.37 1.3E-05 43.5 2.6 23 239-261 120-142 (282)
499 2dby_A GTP-binding protein; GD 85.7 0.42 1.4E-05 45.0 3.0 23 240-262 2-24 (368)
500 3t34_A Dynamin-related protein 85.4 0.39 1.3E-05 44.7 2.7 21 241-261 36-56 (360)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.2e-62 Score=493.70 Aligned_cols=328 Identities=38% Similarity=0.620 Sum_probs=289.8
Q ss_pred ccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCC--CCcEEEEeecccccccccCCcCCCCCCCCCCC-Cee
Q psy1366 6 QLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTK--CKQCFYVKADFEQFYSIANPLSCGSPSSCDGT-NFS 82 (345)
Q Consensus 6 ~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~--C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~-~f~ 82 (345)
.....|.+++.++||||+|+|+|+|+|.++|++.+++|.|.+ ||+.+.++.+....+.+.+|..|| .|+++ +|.
T Consensus 99 ~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~---~C~~~~~~~ 175 (595)
T 3f9v_A 99 RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICP---KCGKPGQFR 175 (595)
T ss_dssp CEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCT---TTCCCSEEE
T ss_pred CCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCC---CCCCCCceE
Confidence 445567789999999999999999999999999999999999 999876543222345789999997 59986 566
Q ss_pred eeecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeec-ccCccceeEEEeee
Q psy1366 83 PVTSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPV-VKGVRSDIELCLSA 159 (345)
Q Consensus 83 ~l~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~-~~~~~~~~~~~i~a 159 (345)
++ .+.+.|+|||+|+|||.+ .|.|++||+++|+|++||||.|+|||+|.|+||++..|... ..+..+.++++++|
T Consensus 176 ~~--~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a 253 (595)
T 3f9v_A 176 LI--PEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKV 253 (595)
T ss_dssp CC--STTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEE
T ss_pred Ee--ccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEE
Confidence 66 567889999999999999 88999999999999999999999999999999999876542 23446789999999
Q ss_pred ceeeeeccCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeee
Q psy1366 160 NYLTVCNDQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAE 239 (345)
Q Consensus 160 ~~i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~ 239 (345)
++|+..+.......+++++++++.++++ ++. .++.+.++++|.|+|++.+|+++++++++|..+...+ ..+|++
T Consensus 254 ~~i~~~~~~~~~~~~t~~~~~~i~~~~~----~~~-~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~ 327 (595)
T 3f9v_A 254 SSIEVSQKVLDEVIISEEDEKKIKDLAK----DPW-IRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGD 327 (595)
T ss_dssp EEEEECCCCCCCCCCTTSTHHHHHTTSS----TTT-GGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECCS
T ss_pred EeecccccccccCCCCHHHHHHHHHHhh----CcH-HHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCCC
Confidence 9999888777777888888888877653 222 2478999999999999999999999999998887777 899999
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHD 317 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~ 317 (345)
+|+||+||||||||+||+++++.+++..+..+.+++.+|++++..++ .+.|..++|++.+|++|||||||||+|+++.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~ 407 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDED 407 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHH
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhH
Confidence 99999999999999999999999999999988888889999988776 4788899999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 318 RTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 318 ~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
|++|+++||+|++++.++|...++++|
T Consensus 408 q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 408 RVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp HHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred hhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 999999999999999999999999876
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=4.7e-50 Score=388.30 Aligned_cols=241 Identities=27% Similarity=0.328 Sum_probs=210.5
Q ss_pred ccCCcCCCCCCCCCCC--CeeeeecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccc------cccCCCEEE
Q psy1366 64 IANPLSCGSPSSCDGT--NFSPVTSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVD------LARPGDDVI 133 (345)
Q Consensus 64 ~~~p~~C~~~~~C~~~--~f~~l~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~------~~~pGd~V~ 133 (345)
...|..||.. .-++. .|... +++.|.|||+|+|||.| +|.|++||+++|+|++|||| +|+|||+|.
T Consensus 87 ~~~~~~~~~~-~~~g~~~~~~r~---~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~ 162 (506)
T 3f8t_A 87 TVAPDVEPRV-RFRGLPHRFRRV---ERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVE 162 (506)
T ss_dssp HHCTTSCCCE-EEECCCGGGSSC---SCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEE
T ss_pred hhCCCCCccc-ccCCcccccchH---hhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEE
Confidence 3457778752 11111 23333 34458999999999999 89999999999999999999 999999999
Q ss_pred EEEEEeeeeeecccCccceeEEEeeeceeeeeccCCCCcccCHHHHHHHHHHHHhhccChhhHHHHHHhccCcccccchH
Q psy1366 134 VCGAVLRRWRPVVKGVRSDIELCLSANYLTVCNDQSSSLVITPELRAEVTQFWEDHKYDGLAARNHILASICPAIYGLYL 213 (345)
Q Consensus 134 i~Gil~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~s~~p~i~G~~~ 213 (345)
|+|||+.. |++||+|+. ++.+....+++++.+.|.++++. +. ++.|++|++| |+|++.
T Consensus 163 v~GI~~~~--------------~l~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~---~~---~~~l~~sIap-I~G~e~ 220 (506)
T 3f8t_A 163 ILGIVRSA--------------TLDALEVHK-KDPIPEVHPDPAELEEFRELADK---DP---LTTFARAIAP-LPGAEE 220 (506)
T ss_dssp EEEEEETT--------------EEEEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS---CH---HHHHHHHHCC-STTCHH
T ss_pred EEEEEEEe--------------EEEEEEEEE-cCccccCCCCHHHHHHHHHHHHH---HH---HHHHHHHhcc-cCCCHH
Confidence 99999642 899999988 55556678899999999998863 33 4899999999 999999
Q ss_pred HHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHH-HhhCCCeEEEcCCccCcCCceEEEEee-cCeeE
Q psy1366 214 VKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFA-KRMSPRSVLTTGVGTTTAGLTVSALRE-NGEWH 291 (345)
Q Consensus 214 vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i-~~~~~~~~~~~~~~~~~~glt~~~~~~-~~~~~ 291 (345)
+|+|++++|+||..+ .|+++||||+|+||| ||+|++++ ++++||.+|++|..++..||+++ .++ +| |.
T Consensus 221 vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~tG-~~ 290 (506)
T 3f8t_A 221 VGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKEDRG-WA 290 (506)
T ss_dssp HHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEESSS-EE
T ss_pred HHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcCCC-cc
Confidence 999999999999665 799999999999999 99999999 99999999999988888899988 666 47 99
Q ss_pred eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 292 LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 292 ~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
+++|++++||+|+||||||++|+++.|.+|||+||+|+|+|+ |+ +||+|
T Consensus 291 ~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lpar 339 (506)
T 3f8t_A 291 LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNAR 339 (506)
T ss_dssp EEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECC
T ss_pred cCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCC
Confidence 999999999999999999999999999999999999999998 77 88887
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=1.5e-37 Score=287.24 Aligned_cols=171 Identities=24% Similarity=0.369 Sum_probs=134.1
Q ss_pred cccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCCeeee
Q psy1366 5 PQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTNFSPV 84 (345)
Q Consensus 5 ~~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~f~~l 84 (345)
|.....|.+++.++||||+|+|+|+|+|.++|++..++|.|.+||+.+.+++. ++.+.+|..|| .|++++|.+.
T Consensus 97 ~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~---~~~~~~P~~Cp---~C~~~~f~l~ 170 (279)
T 1ltl_A 97 SNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQS---TNMITEPSLCS---ECGGRSFRLL 170 (279)
T ss_dssp SCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECS---SSSCCCCSCCT---TTCCCCEEEC
T ss_pred CCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEec---CCcccCCCcCC---CCCCCCcEEe
Confidence 44567788999999999999999999999999999999999999998877664 35688999997 5999887766
Q ss_pred ecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeeecccCccceeEEEeeecee
Q psy1366 85 TSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRPVVKGVRSDIELCLSANYL 162 (345)
Q Consensus 85 ~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~~~~~~~~~~~~~i~a~~i 162 (345)
.+.+.|+|||+|||||+| +|.|++||+++|+|++||||+|+|||+|+|+|||+..| .+..+.+++|++|+||
T Consensus 171 --~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~----~~~~~~~~~~l~a~~I 244 (279)
T 1ltl_A 171 --QDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR----DERTKRFKNFIYGNYT 244 (279)
T ss_dssp --GGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE----ETTTTEEEEEEEEEEC
T ss_pred --ccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee----CCCCceEEEEEEEEEE
Confidence 567889999999999999 89999999999999999999999999999999999876 2446789999999999
Q ss_pred eeeccCCCCcccCHHHHHHHHHHHH
Q psy1366 163 TVCNDQSSSLVITPELRAEVTQFWE 187 (345)
Q Consensus 163 ~~~~~~~~~~~~~~e~~~~~~~~~~ 187 (345)
+..++......+|++++++|.++.+
T Consensus 245 ~~~~~~~~~~~~t~ed~~~i~~ls~ 269 (279)
T 1ltl_A 245 EFLEQEFEELQISEEDEEKIKELAG 269 (279)
T ss_dssp CBC----------------------
T ss_pred EEecCccccCCCCHHHHHHHHHHhc
Confidence 9888776667889999988888764
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.1e-35 Score=268.07 Aligned_cols=158 Identities=30% Similarity=0.484 Sum_probs=135.8
Q ss_pred cccccccCCCCCCCCcEEEEEEEEEEecCCceEEEEEEEEe--CCCCcEEEEeecccccccccCCcCCCCCCCCCCCC-e
Q psy1366 5 PQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVC--TKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN-F 81 (345)
Q Consensus 5 ~~~~~~~~~~s~~igkLV~i~G~Vir~s~vk~~~~~~~f~C--~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~-f 81 (345)
|.....|.+++.++||||+|+|+|+|+|.++|++..++|.| .+||+.+.++....+.+.+.+|..|| .|++++ |
T Consensus 104 ~~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp---~C~~~~~~ 180 (268)
T 2vl6_A 104 PRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICP---KCGKPGQF 180 (268)
T ss_dssp SCEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCT---TTCCBCEE
T ss_pred CCCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCC---CCCCCCCE
Confidence 34456788999999999999999999999999999999999 99999876652112356789999997 699975 7
Q ss_pred eeeecCCCCceeeeeeEEEeeec--CCCCCCceEEEEEEecCccccccCCCEEEEEEEEeeeeee-cccCccceeEEEee
Q psy1366 82 SPVTSVDQDNYKDYQEIKIQERA--AGVGSVPKSIWVTLEDDLVDLARPGDDVIVCGAVLRRWRP-VVKGVRSDIELCLS 158 (345)
Q Consensus 82 ~~l~~~~~~~~~d~Q~IriQE~~--~~~g~~prsi~V~l~~dlv~~~~pGd~V~i~Gil~~~~~~-~~~~~~~~~~~~i~ 158 (345)
.+. .+.+.|+|||+|||||+| +|.|++||+++|+|++||||+|+|||+|+|+|||+..|.. ...+..+.+++||+
T Consensus 181 ~l~--~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~ 258 (268)
T 2vl6_A 181 RLI--PEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMK 258 (268)
T ss_dssp EEC--GGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEE
T ss_pred EEe--cCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEE
Confidence 766 567889999999999999 8999999999999999999999999999999999988754 23456688999999
Q ss_pred eceeeeecc
Q psy1366 159 ANYLTVCND 167 (345)
Q Consensus 159 a~~i~~~~~ 167 (345)
||||+..++
T Consensus 259 an~I~~~~~ 267 (268)
T 2vl6_A 259 VSSIEVSQK 267 (268)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEecc
Confidence 999987654
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.55 E-value=2e-14 Score=135.18 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=92.8
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc-CC-ccC
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT-GV-GTT 275 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~-~~-~~~ 275 (345)
..+..++.+.|+|++.++.++..++.++ .|+||+||||||||++++++++.++..++.. .. ...
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~ 84 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 5678889999999999999999998876 3999999999999999999999988765432 21 112
Q ss_pred cCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 276 TAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 276 ~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
...+......+ .+.|...+|.+ .++++||||+++++++.+++|+++|+++.+++
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 85 PSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI 140 (331)
T ss_dssp HHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred hhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceee
Confidence 22233333222 35666677766 36899999999999999999999999998877
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.54 E-value=6.7e-15 Score=145.81 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=90.0
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~ 274 (345)
+.+.+++.+.|+|++.+++++.+++.++ .|+||+||||||||+|++++++.+++. .+.....+
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~ 79 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 79 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence 5678889999999999999999998877 499999999999999999999988652 22222222
Q ss_pred CcCCc----eEEEEeecCeeE-eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEEeccC
Q psy1366 275 TTAGL----TVSALRENGEWH-LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344 (345)
Q Consensus 275 ~~~gl----t~~~~~~~~~~~-~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~l~ar 344 (345)
+...+ +.......+.+. ...|. ++..+|+|||||++++++.+++|+++|+++.+++ .|....++.|
T Consensus 80 t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~ 150 (500)
T 3nbx_X 80 TPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMR 150 (500)
T ss_dssp CHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCC
T ss_pred CHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchh
Confidence 22222 111111122221 22332 2346789999999999999999999999999987 5655555543
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.47 E-value=3e-14 Score=134.36 Aligned_cols=126 Identities=23% Similarity=0.260 Sum_probs=90.8
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc-----------
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG----------- 273 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~----------- 273 (345)
+.+++|++.++.++..++..+. ..|+||+||||||||++++++++.+++..+..+..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhCCC------------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccc
Confidence 3468999999998887776431 13899999999999999999999998644333211
Q ss_pred ----------------------cCcCCceEEEE-e---ecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 ----------------------TTTAGLTVSAL-R---ENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 ----------------------~~~~glt~~~~-~---~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+...+..... . ..+.+...+|.+..|++|++||||+++++.+.++.|+++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 00001111100 0 012345667888889999999999999999999999999999
Q ss_pred CEEEEeeCCeEEEec
Q psy1366 328 QTISVAKDKESKKVK 342 (345)
Q Consensus 328 ~~i~i~k~gi~~~l~ 342 (345)
+.+.+...|.....+
T Consensus 171 ~~~~~~~~g~~~~~~ 185 (350)
T 1g8p_A 171 GENVVERDGLSIRHP 185 (350)
T ss_dssp SEEEECCTTCCEEEE
T ss_pred CceEEEecceEEeeC
Confidence 988888877654443
No 8
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.36 E-value=2.5e-13 Score=130.00 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=82.4
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCcccCC------------------CCCceeeeeceeeeCCCCChHHHHHHHH
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRGGE------------------DGSKVRAESHLLLVGDPGTGKSEILKFA 259 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~------------------~~~~~r~~~~iLl~G~pGtGKs~l~~~i 259 (345)
..+.+.+...|+|++.+|+++..++.....+... .+...+...|+||+||||||||++++++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 4566667778999999999999887421110000 0000123459999999999999999999
Q ss_pred HhhCCCeEEEcCCcc-CcCCceEEEEeec--CeeEeeeceeeecCCcEEEEcCCCCCCHH--------------hHHHHH
Q psy1366 260 KRMSPRSVLTTGVGT-TTAGLTVSALREN--GEWHLEAGALVLSDGGVCCIDEFSSIKEH--------------DRTSIH 322 (345)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~glt~~~~~~~--~~~~~~~G~l~la~~gi~~IDEidk~~~~--------------~~~~l~ 322 (345)
++.++..++...... ...++.....+.. ..+....|.+..+++||+||||++++... .+++|+
T Consensus 93 a~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll 172 (376)
T 1um8_A 93 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALL 172 (376)
T ss_dssp HHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHH
T ss_pred HHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHH
Confidence 999976654432211 1122211110000 00111134455678999999999999988 899999
Q ss_pred HHHhCCEEEEeeCC
Q psy1366 323 EAMEQQTISVAKDK 336 (345)
Q Consensus 323 eame~~~i~i~k~g 336 (345)
.+||++.+++...|
T Consensus 173 ~~le~~~~~~~~~~ 186 (376)
T 1um8_A 173 KIVEGSLVNIPPKG 186 (376)
T ss_dssp HHHHCCEEC-----
T ss_pred HHhhccceeccccc
Confidence 99999887654444
No 9
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.22 E-value=1.4e-11 Score=125.22 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=85.3
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE----EEcCCccC-----
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV----LTTGVGTT----- 275 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~----~~~~~~~~----- 275 (345)
..+++|++.++..+.+++..| .++||+||||||||+|++.++.++++.. ...+....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~ 105 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPR 105 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCE
T ss_pred cceEECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCc
Confidence 356899999999999999877 4999999999999999999999986531 11111110
Q ss_pred -------------------------------------------------------------cCCceEEEEee----c---
Q psy1366 276 -------------------------------------------------------------TAGLTVSALRE----N--- 287 (345)
Q Consensus 276 -------------------------------------------------------------~~glt~~~~~~----~--- 287 (345)
...|+..+..+ +
T Consensus 106 i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~ 185 (604)
T 3k1j_A 106 IKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLG 185 (604)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CC
T ss_pred EEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcc
Confidence 00011111000 0
Q ss_pred --CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 288 --GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 288 --~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
....+.+|.+..|++|++||||++.|++..|+.|+++||++++.+.
T Consensus 186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~ 233 (604)
T 3k1j_A 186 TPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT 233 (604)
T ss_dssp CCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB
T ss_pred ccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec
Confidence 0112578999999999999999999999999999999999998875
No 10
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.21 E-value=9.5e-12 Score=103.01 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=57.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
.||||+||||||||.+++++++.+++ ++.+........ ....|.+..|++|++||||+|.++++
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~~~a~~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA-------------PQLNDFIALAQGGTLVLSHPEHLTRE 91 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS-------------SCHHHHHHHHTTSCEEEECGGGSCHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc-------------hhhhcHHHHcCCcEEEEcChHHCCHH
Confidence 59999999999999999999998754 222211110000 12256677789999999999999999
Q ss_pred hHHHHHHHHhCC
Q psy1366 317 DRTSIHEAMEQQ 328 (345)
Q Consensus 317 ~~~~l~eame~~ 328 (345)
.|..|+++|+..
T Consensus 92 ~q~~Ll~~l~~~ 103 (145)
T 3n70_A 92 QQYHLVQLQSQE 103 (145)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhhc
Confidence 999999999654
No 11
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=2.3e-12 Score=106.61 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=57.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRT 319 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~ 319 (345)
.||||+|+||||||.+++++++.++ +++..... .+.. . ...|.+..+++|++||||++.++.+.|.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~----~~~~-------~--~~~~~~~~a~~~~l~lDei~~l~~~~q~ 93 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV----EYLI-------D--MPMELLQKAEGGVLYVGDIAQYSRNIQT 93 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST----THHH-------H--CHHHHHHHTTTSEEEEEECTTCCHHHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEechh----hCCh-------H--hhhhHHHhCCCCeEEEeChHHCCHHHHH
Confidence 5999999999999999999998876 33222111 1100 0 1356677788999999999999999999
Q ss_pred HHHHHHhCC
Q psy1366 320 SIHEAMEQQ 328 (345)
Q Consensus 320 ~l~eame~~ 328 (345)
.|+++|+++
T Consensus 94 ~Ll~~l~~~ 102 (143)
T 3co5_A 94 GITFIIGKA 102 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999875
No 12
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.15 E-value=9.4e-13 Score=125.43 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=80.1
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccC---CCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc-
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGG---EDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT- 274 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~---~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~- 274 (345)
.+.+.+...|+|++.+|+.+..++.....+.. ..........|+||+||||||||++++++++.+...++......
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 34445556689999999998887742111000 00001123359999999999999999999999977665443211
Q ss_pred CcCCceEEEEee--cCeeEeeeceeeecCCcEEEEcCCCCCCHH--------------hHHHHHHHHhCCEEEE
Q psy1366 275 TTAGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDEFSSIKEH--------------DRTSIHEAMEQQTISV 332 (345)
Q Consensus 275 ~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEidk~~~~--------------~~~~l~eame~~~i~i 332 (345)
...++....... ...+...++.+..+++||+||||+|++... .|+.|+++||...+.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~ 161 (363)
T 3hws_A 88 TEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 161 (363)
T ss_dssp TTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----
T ss_pred cccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeec
Confidence 111111000000 000111133345567899999999999876 8999999999555444
No 13
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.15 E-value=4.4e-12 Score=117.20 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=82.3
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCccc-CCCCC-ceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc-CCcc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRG-GEDGS-KVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT-GVGT 274 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~-~~~~~-~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~-~~~~ 274 (345)
+.+.+++.+.|+|++.+++++..++.....+. ...+. ..+...++||+||||||||++++++++.++..++.. ....
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 45777788899999999999988876521000 00000 001235999999999999999999999887654432 2111
Q ss_pred CcCCceEE----EEeecCeeEeeeceeeec-CCcEEEEcCCCCCCHHh------------HHHHHHHHhCCEEE
Q psy1366 275 TTAGLTVS----ALRENGEWHLEAGALVLS-DGGVCCIDEFSSIKEHD------------RTSIHEAMEQQTIS 331 (345)
Q Consensus 275 ~~~glt~~----~~~~~~~~~~~~G~l~la-~~gi~~IDEidk~~~~~------------~~~l~eame~~~i~ 331 (345)
...++... ..++ -+...+|.+..+ .++|++|||+|++..+. ++.|+++||++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRD--LTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp SSCCSGGGSTTHHHHH--HHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred ccCCccCccHHHHHHH--HHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 11111000 0000 000012344443 47999999999998765 89999999987654
No 14
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.08 E-value=1.7e-10 Score=120.06 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=83.5
Q ss_pred HHHHhccCcccccchHHHHHHHHHHh----CCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLA----GGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG 273 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~----~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~ 273 (345)
..+.+.+...++|++.++..+..++. |.... .+...|+||+||||||||.+++++++.++..+......
T Consensus 450 ~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~-------~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s 522 (758)
T 1r6b_X 450 KNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHE-------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_dssp HHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCT-------TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEech
Confidence 44566788899999887766555443 22111 12224899999999999999999999987655433221
Q ss_pred cCc-----CCceEEEEeecCeeE------eeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 274 TTT-----AGLTVSALRENGEWH------LEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 274 ~~~-----~glt~~~~~~~~~~~------~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
... ..+.... .+ |. .-.+++..++++|+||||+++++++.++.|+++||++.++..
T Consensus 523 ~~~~~~~~~~l~g~~---~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~ 589 (758)
T 1r6b_X 523 EYMERHTVSRLIGAP---PG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN 589 (758)
T ss_dssp GCSSSSCCSSSCCCC---SC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET
T ss_pred hhcchhhHhhhcCCC---CC-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC
Confidence 111 1111000 00 10 013445567789999999999999999999999999988753
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.06 E-value=7.8e-11 Score=110.63 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=74.4
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSAL 284 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~ 284 (345)
..+++|++.++..+...+....... ....|+||+||||||||++++++++.+...++........
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--------
Confidence 4578999988888777665421000 1124899999999999999999999887654332111100
Q ss_pred eecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 285 RENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 285 ~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
..+. +....-..+++|++||||++.++.+.+..|+.+|+++.+.+
T Consensus 93 -~~~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 93 -KSGD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp -SHHH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC--
T ss_pred -chhH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchh
Confidence 0000 00111124689999999999999999999999999987654
No 16
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.05 E-value=3.1e-11 Score=111.77 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=80.4
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe---EEEcCCccC
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS---VLTTGVGTT 275 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~---~~~~~~~~~ 275 (345)
.+.+.+...++|++.+++.+..++..+.... .+ ..+...++||+||||||||++++++++.+.+. +........
T Consensus 10 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~-~~--~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 10 RLEEELHKRVVGQDEAIRAVADAIRRARAGL-KD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp THHHHHHTTCCSCHHHHHHHHHHHHHHHHTC-SC--TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CC--CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4555667788999988888877776541100 00 01223489999999999999999999987432 222211111
Q ss_pred cCC-----ceEEEEeecC--eeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 276 TAG-----LTVSALRENG--EWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 276 ~~g-----lt~~~~~~~~--~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
... +........+ ....-.+++..+.+|+++|||+++++++.++.|+++||++.+.
T Consensus 87 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 87 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLT 149 (311)
T ss_dssp CSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEE
T ss_pred cccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEE
Confidence 000 0000000000 0001123344456799999999999999999999999999876
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.05 E-value=3.7e-10 Score=105.03 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=61.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCCccCc----CCceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGVGTTT----AGLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~~~~~----~glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.+|||+|+||||||.+++++++.+++. +++....... ..|... .+. .+......|.+..|++|++||||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~-~~g~~tg~~~~~~g~~~~a~~g~L~LDE 104 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLDE 104 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC-CSSCCC---CCCCCHHHHHTTSEEEEES
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc-cccccCchhhhhcCHHHhcCCCEEEEec
Confidence 599999999999999999999987642 2222111000 000000 000 01112346778889999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i 330 (345)
++.|+.+.|..|+.+|+++.+
T Consensus 105 i~~l~~~~q~~Ll~~l~~~~~ 125 (304)
T 1ojl_A 105 IGDISPLMQVRLLRAIQEREV 125 (304)
T ss_dssp CTTCCHHHHHHHHHHHHSSBC
T ss_pred cccCCHHHHHHHHHHHhcCEe
Confidence 999999999999999999863
No 18
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.04 E-value=1.6e-10 Score=104.80 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=60.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCc-------CCceEEEEeecCeeEeeeceeeecCCcEEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTT-------AGLTVSALRENGEWHLEAGALVLSDGGVCCID 308 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~-------~glt~~~~~~~~~~~~~~G~l~la~~gi~~ID 308 (345)
.++||+|+||||||.+++++++.+++ .+++....... .|...... .+......|.+..+++|++|||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~--~g~~~~~~~~l~~a~~~~l~lD 107 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF--TGAQKRHPGRFERADGGTLFLD 107 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-----------CCCCHHHHTTTSEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCccccc--ccccccccchhhhcCCcEEEEe
Confidence 49999999999999999999998864 23332211100 01000000 0111123567777889999999
Q ss_pred CCCCCCHHhHHHHHHHHhCCEE
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~~i 330 (345)
|++.++.+.|..|+.+|+++++
T Consensus 108 Ei~~l~~~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 108 ELATAPMMVQEKLLRVIEYGEL 129 (265)
T ss_dssp SGGGSCHHHHHHHHHHHHHCEE
T ss_pred chHhcCHHHHHHHHHHHHhCCe
Confidence 9999999999999999998864
No 19
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.00 E-value=6.4e-11 Score=109.65 Aligned_cols=124 Identities=22% Similarity=0.198 Sum_probs=74.2
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCC-cc-cCCCCC-ceeeeeceeeeCCCCChHHHHHHHHHhhCCC-------e-
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGV-GR-GGEDGS-KVRAESHLLLVGDPGTGKSEILKFAKRMSPR-------S- 266 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~-~~-~~~~~~-~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-------~- 266 (345)
..+.+.+..+|+|++.+|..+.-.+.... .. ....|. ..+...|+||+||||||||++++++++.+.. .
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 45666777789999999988764432100 00 000000 0122358999999999999999999887632 1
Q ss_pred EEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCC---------CHHhHHHHHHHHhCC
Q psy1366 267 VLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSI---------KEHDRTSIHEAMEQQ 328 (345)
Q Consensus 267 ~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~---------~~~~~~~l~eame~~ 328 (345)
++++.. .....+. +.......+.+..+.+++++|||+|.+ +...+..|+..|+++
T Consensus 103 ~~~~~~-~l~~~~~------g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 103 VSVTRD-DLVGQYI------GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp EEECGG-GTCCSST------TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred EEEcHH-Hhhhhcc------cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 222210 0000000 000000123445567899999999966 888899999999976
No 20
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.93 E-value=1.3e-10 Score=113.74 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred ccCcccccchHHH---HHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCc
Q psy1366 203 SICPAIYGLYLVK---LCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGL 279 (345)
Q Consensus 203 s~~p~i~G~~~vk---~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~gl 279 (345)
.-..+++|++.+. ..+..++..+.. .++||+||||||||++++.+++.+...+....... .|.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~------------~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--~~~ 88 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHL------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVT--SGV 88 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCC------------CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT--CCH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCC------------cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc--CCH
Confidence 3445799999888 677777776621 38999999999999999999999887654332111 110
Q ss_pred eEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEe
Q psy1366 280 TVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVA 333 (345)
Q Consensus 280 t~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i~ 333 (345)
...++. +.........+.++++||||++.++...|+.|+..||++++.+-
T Consensus 89 --~~ir~~--~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI 138 (447)
T 3pvs_A 89 --KEIREA--IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFI 138 (447)
T ss_dssp --HHHHHH--HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEE
T ss_pred --HHHHHH--HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEE
Confidence 000100 00000001134679999999999999999999999999887763
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.91 E-value=4.1e-10 Score=117.27 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=75.8
Q ss_pred hccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcCC
Q psy1366 202 ASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTAG 278 (345)
Q Consensus 202 ~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~g 278 (345)
+.+...++|++.++..+..++....... .+ ..+..-++||+||||||||.+++++++.+.+ ++...........
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~~-~~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAGL-KD--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTTC-SC--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHccc-CC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 3456679999888877766665321100 00 0122237999999999999999999998632 2221111111100
Q ss_pred ceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 279 LTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 279 lt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
...+ .+.+ .+++..+.++|+||||+++++++.++.|+++||+++++.
T Consensus 564 ~~~~----~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~ 610 (758)
T 3pxi_A 564 HSTS----GGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD 610 (758)
T ss_dssp CCCC-------C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-
T ss_pred cccc----cchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEc
Confidence 0000 1111 233445568999999999999999999999999988654
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=3.4e-09 Score=98.55 Aligned_cols=108 Identities=25% Similarity=0.367 Sum_probs=72.2
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE-cCCccCcCCceEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT-TGVGTTTAGLTVSA 283 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~-~~~~~~~~glt~~~ 283 (345)
+.+++|++.++..+..++....... +...++||+||||||||++++++++.++..+.. .+......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------ 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------ 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHC-------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccC-------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh------
Confidence 3568898877776655543210000 112489999999999999999999877655432 22111000
Q ss_pred EeecCeeEeeeceee--ecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 284 LRENGEWHLEAGALV--LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 284 ~~~~~~~~~~~G~l~--la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
+++ .+.+. +++++++||||++.++...+..|+.+|+++.+.+
T Consensus 78 ----~~l---~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 78 ----GDL---AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp ----HHH---HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEE
T ss_pred ----HHH---HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHH
Confidence 000 11121 4678999999999999999999999999987654
No 23
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.84 E-value=3.2e-09 Score=103.30 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHHHhccCcccccchHHHHHHHHHHhCCCccc-CCCCCce-eeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 198 NHILASICPAIYGLYLVKLCLAVVLAGGVGRG-GEDGSKV-RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 198 ~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~-~~~~~~~-r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
..+.+.+...|.|++.+|+++..++.....+. ...+... ....|+||+||||||||++++++++.++..++.
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 35667778889999999999998886531110 0011100 122489999999999999999999998875543
No 24
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.79 E-value=1.8e-09 Score=108.31 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=66.7
Q ss_pred HHHhccCcccccchHHHHHHHHHHhC-CCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc--C
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAG-GVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT--T 275 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~-g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~--~ 275 (345)
...+.+..+++|++.+|+.+.-.+.- ..... .+ ..++||+||||||||+|+++++..+++......... .
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~------~~-g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~ 146 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQKLTKS------LK-GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD 146 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS------CC-SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhccc------CC-CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch
Confidence 34455677899999998877433221 00000 01 148999999999999999999999877554332211 1
Q ss_pred cCCceEEEEeecCee-Eeeecee----ee--cCCcEEEEcCCCCCCHHh----HHHHHHHHhCC
Q psy1366 276 TAGLTVSALRENGEW-HLEAGAL----VL--SDGGVCCIDEFSSIKEHD----RTSIHEAMEQQ 328 (345)
Q Consensus 276 ~~glt~~~~~~~~~~-~~~~G~l----~l--a~~gi~~IDEidk~~~~~----~~~l~eame~~ 328 (345)
...+.... + .| ...+|.+ .. ..++|+||||+|++..+. +++|+++|+..
T Consensus 147 ~~~~~g~~-~---~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~ 206 (543)
T 3m6a_A 147 ESEIRGHR-R---TYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPE 206 (543)
T ss_dssp ---------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTT
T ss_pred hhhhhhHH-H---HHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhh
Confidence 11111100 0 01 0112222 12 267899999999999884 48899999753
No 25
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.78 E-value=1.4e-09 Score=103.75 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=65.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCe--EEEcCCccCcCC-----ceEEEEee--cCeeEeeeceeeecCCcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRS--VLTTGVGTTTAG-----LTVSALRE--NGEWHLEAGALVLSDGGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~--~~~~~~~~~~~g-----lt~~~~~~--~~~~~~~~G~l~la~~gi~~IDEi 310 (345)
.++|+.|++||||+.++++++..+++. +......+.... |+... +. +|.....+|.+..|++|++||||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~-~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHE-KGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEEC-SCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcc-ccccCCcccccCChHhhcCCCeEEecCh
Confidence 589999999999999999999988764 221111111111 11110 10 121223578889999999999999
Q ss_pred CCCCHHhHHHHHHHHhCCEEE
Q psy1366 311 SSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 311 dk~~~~~~~~l~eame~~~i~ 331 (345)
+.|+...|..|+.+||++++.
T Consensus 232 ~~l~~~~Q~~Ll~~l~~~~~~ 252 (368)
T 3dzd_A 232 GELDQRVQAKLLRVLETGSFT 252 (368)
T ss_dssp GGSCHHHHHHHHHHHHHSEEC
T ss_pred hhCCHHHHHHHHHHHHhCCcc
Confidence 999999999999999999865
No 26
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.75 E-value=1.4e-09 Score=104.60 Aligned_cols=91 Identities=20% Similarity=0.371 Sum_probs=64.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC---eEEEcCCccCcC-----CceEEEEee--cCeeEeeeceeeecCCcEEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR---SVLTTGVGTTTA-----GLTVSALRE--NGEWHLEAGALVLSDGGVCCIDE 309 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~~~~~~~-----glt~~~~~~--~~~~~~~~G~l~la~~gi~~IDE 309 (345)
.++|+.|++||||+.++++++..+++ ++......+... .|+.. .+. +|.....+|.+..|++|++||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 58999999999999999999999875 222211111100 01100 000 11122357888999999999999
Q ss_pred CCCCCHHhHHHHHHHHhCCEEE
Q psy1366 310 FSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 310 idk~~~~~~~~l~eame~~~i~ 331 (345)
++.|+.+.|..|+++|+++++.
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~ 261 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFY 261 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEEC
T ss_pred hhhCCHHHHHHHHHHHhcCcEE
Confidence 9999999999999999998865
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.68 E-value=5e-09 Score=100.54 Aligned_cols=115 Identities=21% Similarity=0.201 Sum_probs=66.3
Q ss_pred CcccccchHHHHHHHHHHhCCCc-ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVG-RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~-~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
..+|+|++.+++.+...+..... .....+. .....++||+||||||||.+++++++.+...++...... +....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~----l~~~~ 188 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS----LTSKY 188 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC----C----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhccc-CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH----hhccc
Confidence 34789999998888776632100 0000000 012359999999999999999999999887765443221 11111
Q ss_pred EeecCeeEeeeceee---ecCCcEEEEcCCCCC-----------CHHhHHHHHHHHh
Q psy1366 284 LRENGEWHLEAGALV---LSDGGVCCIDEFSSI-----------KEHDRTSIHEAME 326 (345)
Q Consensus 284 ~~~~~~~~~~~G~l~---la~~gi~~IDEidk~-----------~~~~~~~l~eame 326 (345)
..+... .....+. ....+|+||||+|.+ ....+..|+..|+
T Consensus 189 ~g~~~~--~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 189 VGEGEK--LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp ---CHH--HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred cchHHH--HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 000000 0011111 123589999999987 3455667777776
No 28
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.68 E-value=5.1e-09 Score=110.37 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=73.0
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC---e-EEEcCCccC----c
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR---S-VLTTGVGTT----T 276 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~---~-~~~~~~~~~----~ 276 (345)
...|+|++.+...+..++...... ..+ ..+...++||+||||||||.+++++++.+.+ . +++....-. .
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g-~~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG-LKD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG-CSC--SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc-cCC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 346899987777666555432100 000 0122248999999999999999999998733 2 233221100 0
Q ss_pred CCceEE---EE--eecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEE
Q psy1366 277 AGLTVS---AL--RENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTIS 331 (345)
Q Consensus 277 ~glt~~---~~--~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~ 331 (345)
..+..+ .. ...+.+ .+++..+.++|+||||+++++++.++.|+++|+++.++
T Consensus 634 s~l~g~~~~~~G~~~~g~l---~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQL---TEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT 690 (854)
T ss_dssp GGC--------------CH---HHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEEC
T ss_pred HHHcCCCCCCcCccccchH---HHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceE
Confidence 111110 00 000111 22333456799999999999999999999999999865
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.65 E-value=7.6e-09 Score=93.10 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=39.8
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
+.+|+|++.+|+.+.-.+........-.....+...++||+||||||||++++++++.+...++
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3468899888877754332110000000001123358999999999999999999998766544
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.61 E-value=2.3e-09 Score=100.34 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHhCCCc--ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc---cCcCCce
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVG--RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG---TTTAGLT 280 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~--~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~---~~~~glt 280 (345)
.+|.|++.+|+.+..++..... ..... ..+...++||+||||||||++++++++.++..++..... +...|-+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchH
Confidence 4689999998888776631100 00001 113345899999999999999999999887665433211 0001100
Q ss_pred EEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCH-----------HhHHHHHHHHh
Q psy1366 281 VSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKE-----------HDRTSIHEAME 326 (345)
Q Consensus 281 ~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~-----------~~~~~l~eame 326 (345)
....+ .. -........+|+||||+|.+.. ..+..|+..|+
T Consensus 96 ~~~~~---~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 96 EKLVK---QL---FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HHHHH---HH---HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred HHHHH---HH---HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 00000 00 0000112458999999998854 23567777775
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.60 E-value=1.1e-08 Score=95.84 Aligned_cols=60 Identities=25% Similarity=0.213 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHHhCCC--cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC-CCeE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGV--GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS-PRSV 267 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~--~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~-~~~~ 267 (345)
.+|.|++.+|+.+.-++.-.. +.... +. .+...++||+||||||||+|++++++.+ ...+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~-~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFT-GK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSC-TT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHh-CC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 468899888887765543110 00001 11 1223489999999999999999999988 4433
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.60 E-value=8.9e-09 Score=94.71 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred CcccccchHHHHHHHHHHhCCCc-ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVG-RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~-~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
..+|.|++.+|+.+..++..... .....+. .....++||+||||||||++++++++.+...++.............
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~-- 96 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG-- 96 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccc--
Confidence 35789999999888766533110 0000000 0123589999999999999999999998765543221111100000
Q ss_pred EeecCe-eEeeeceeeecCCcEEEEcCCCCCC-----------HHhHHHHHHHHhC
Q psy1366 284 LRENGE-WHLEAGALVLSDGGVCCIDEFSSIK-----------EHDRTSIHEAMEQ 327 (345)
Q Consensus 284 ~~~~~~-~~~~~G~l~la~~gi~~IDEidk~~-----------~~~~~~l~eame~ 327 (345)
+... ....-........++++|||+|.+. ...+..|+..|+.
T Consensus 97 --~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 97 --DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp --CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 0000 0000001112356899999998873 3445567777764
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=6.6e-09 Score=97.57 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC-------eEEEcCCccCc
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR-------SVLTTGVGTTT 276 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~-------~~~~~~~~~~~ 276 (345)
-..+++|++.++..+..++..|.. .|+||+||||+|||++++.+++.+.. .+.... +..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~--~~~ 100 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL------------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA--SDE 100 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC------------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS--SSC
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC------------CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc--ccc
Confidence 345789999999988888876621 27999999999999999999987531 122211 111
Q ss_pred CCceEEEEeec-CeeEee---------eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 277 AGLTVSALREN-GEWHLE---------AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 277 ~glt~~~~~~~-~~~~~~---------~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
.+.. ..++. ..+... .+....++.++++|||++.++...+++|+++||+.
T Consensus 101 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 101 RGIS--IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY 160 (353)
T ss_dssp CCHH--HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT
T ss_pred cchH--HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc
Confidence 1100 00000 000000 00111245679999999999999999999999864
No 34
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.59 E-value=2.1e-08 Score=98.03 Aligned_cols=118 Identities=21% Similarity=0.142 Sum_probs=63.2
Q ss_pred CcccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC-CCeEEEcCCccCcCCceEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS-PRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~-~~~~~~~~~~~~~~glt~~ 282 (345)
..+|.|++.+|..+..++...... ....+ ..+...++||+||||||||+|+++++..+ ...++..... .+...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~----~l~~~ 207 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS----DLVSK 207 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH----HHHhh
Confidence 357899999998887665311000 00000 11223589999999999999999999988 4444322111 11111
Q ss_pred EEeecCe-eEeeeceeeecCCcEEEEcCCCCCCH-----------HhHHHHHHHHhC
Q psy1366 283 ALRENGE-WHLEAGALVLSDGGVCCIDEFSSIKE-----------HDRTSIHEAMEQ 327 (345)
Q Consensus 283 ~~~~~~~-~~~~~G~l~la~~gi~~IDEidk~~~-----------~~~~~l~eame~ 327 (345)
...+... ....-........+|+||||+|.+.. ..++.|+..|+.
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 0000000 00000001123468999999999832 345566666653
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.59 E-value=5.6e-09 Score=99.11 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=65.9
Q ss_pred CcccccchHHHHHHHHHHhCCC--cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGV--GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~--~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~ 282 (345)
..+|.|++.+|+.+..++.... +..... ..+...++||+||||||||++++++++.+...++..........+..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g- 126 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG- 126 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCS--SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhc--CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcc-
Confidence 4579999999888876653210 000011 11333589999999999999999999988766543321110000000
Q ss_pred EEeecCeeEeeeceeee---cCCcEEEEcCCCCCCHH-----------hHHHHHHHHh
Q psy1366 283 ALRENGEWHLEAGALVL---SDGGVCCIDEFSSIKEH-----------DRTSIHEAME 326 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~l---a~~gi~~IDEidk~~~~-----------~~~~l~eame 326 (345)
+... .....+.. ...+|+||||+|.+... .++.|+..|+
T Consensus 127 ---~~~~--~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 127 ---ESEK--LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp ----CHH--HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred ---hHHH--HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 0000 00011111 25789999999998743 3567777775
No 36
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=7.4e-09 Score=95.98 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=73.7
Q ss_pred ChhhHHHHHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC------
Q psy1366 192 DGLAARNHILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR------ 265 (345)
Q Consensus 192 ~~~~~~~~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~------ 265 (345)
.||. +.....-+.+++|++.++..+.-.+..|.. .|+||+||||+|||++++.+++.+..
T Consensus 13 ~~~~--~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 13 KPWV--EKYRPQRLDDIVGQEHIVKRLKHYVKTGSM------------PHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp SCHH--HHTCCCSTTTCCSCHHHHHHHHHHHHHTCC------------CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred Cchh--hccCCCCHHHhhCCHHHHHHHHHHHHcCCC------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4553 333333456799999999888877766511 37999999999999999999987421
Q ss_pred eEEEcCCccCcCCceEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 266 SVLTTGVGTTTAGLTVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 266 ~~~~~~~~~~~~glt~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+...+. ...+.. ..++. .++ ...+.+..++.++++|||++.++.+.+++|+.+||+
T Consensus 79 ~~~~~~~--~~~~~~--~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~ 136 (327)
T 1iqp_A 79 FLELNAS--DERGIN--VIREKVKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM 136 (327)
T ss_dssp EEEEETT--CHHHHH--TTHHHHHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred eEEeecc--ccCchH--HHHHHHHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh
Confidence 1111111 000000 00000 000 011222225678999999999999999999999986
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=1.5e-08 Score=96.01 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=37.5
Q ss_pred CcccccchHHHHHHH---HHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 205 CPAIYGLYLVKLCLA---VVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~---l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
+.+++|++.++.++. -.+..|.. ...++||+||||||||++++++++.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~----------~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI----------AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----------TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC----------CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899998887743 23333311 1138999999999999999999988764
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.58 E-value=1.9e-08 Score=93.78 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
-..++.|++.++..+.-++..|.. ...+|+.||||||||++++++++.+...++..... ..+. ..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~-----------~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~--~~~~--~~ 88 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKI-----------PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS--DCKI--DF 88 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCC-----------CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT--TCCH--HH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCC-----------CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc--ccCH--HH
Confidence 345789999999888888876521 12467777899999999999999886544322111 1110 00
Q ss_pred Eeec-CeeEeeecee-eecCCcEEEEcCCCCCC-HHhHHHHHHHHhC
Q psy1366 284 LREN-GEWHLEAGAL-VLSDGGVCCIDEFSSIK-EHDRTSIHEAMEQ 327 (345)
Q Consensus 284 ~~~~-~~~~~~~G~l-~la~~gi~~IDEidk~~-~~~~~~l~eame~ 327 (345)
.++. .++ +... ...+.++++|||+|.+. .+.+++|+..||+
T Consensus 89 i~~~~~~~---~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 89 VRGPLTNF---ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp HHTHHHHH---HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 0100 000 0000 11257899999999999 9999999999986
No 39
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=8.5e-09 Score=97.01 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=69.8
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCe----EEEcCCccCcCCc
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRS----VLTTGVGTTTAGL 279 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~----~~~~~~~~~~~gl 279 (345)
-..+++|++.++..+..++..|.. .|+||+||||+|||++++.+++.+... .+.....+...|.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~------------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKL------------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI 90 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCC------------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH
Confidence 345688999999998888876621 379999999999999999999875321 0111111111111
Q ss_pred eEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 280 TVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 280 t~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
. ..++. +.+. ..+....++..+++|||+|.|+.+.+++|+..||+
T Consensus 91 ~--~ir~~i~~~~-~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 136 (340)
T 1sxj_C 91 D--VVRNQIKDFA-STRQIFSKGFKLIILDEADAMTNAAQNALRRVIER 136 (340)
T ss_dssp H--HHHTHHHHHH-HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHH-hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 0 00100 0110 00111223468999999999999999999999986
No 40
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=8.9e-09 Score=94.07 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|.|++.+++.+...+...... ..-.....+...++||+||||||||++++++++.+...++.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45778877777765554221000 00000000122489999999999999999999998776543
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.55 E-value=2e-08 Score=87.06 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=66.8
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC------eEEEcCCccCcC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR------SVLTTGVGTTTA 277 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~------~~~~~~~~~~~~ 277 (345)
...+++|++.++..+...+..+.. .|+||+|+||+|||++++.+++.+.. .+..... ...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~~~ 80 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNI------------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS--DER 80 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCC------------CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--CTT
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCC------------CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc--ccc
Confidence 345688999888888877765411 27999999999999999999876421 1111111 000
Q ss_pred CceEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 GLTVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 glt~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+... .++. ..+ ........+..++++|||++.++...+..|+..|++
T Consensus 81 ~~~~--~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 81 GIDV--VRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (226)
T ss_dssp CHHH--HHHHHHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred ChHH--HHHHHHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence 0000 0000 000 000011124578999999999999999999999986
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.48 E-value=1e-08 Score=97.32 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=65.1
Q ss_pred CcccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSA 283 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~ 283 (345)
..+|+|++.+|+.+..++...... ....+ ..+...++||+||||||||++++++++.+...++..........+
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~---- 157 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW---- 157 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhh-ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc----
Confidence 346899999988887665421000 00000 012235899999999999999999999987655432211100000
Q ss_pred EeecCeeE-eeecee---eecCCcEEEEcCCCCCCH-----------HhHHHHHHHHhC
Q psy1366 284 LRENGEWH-LEAGAL---VLSDGGVCCIDEFSSIKE-----------HDRTSIHEAMEQ 327 (345)
Q Consensus 284 ~~~~~~~~-~~~G~l---~la~~gi~~IDEidk~~~-----------~~~~~l~eame~ 327 (345)
.++.. .....+ .....+|+||||+|.+.. ..++.|+..|+.
T Consensus 158 ---~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 158 ---VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp ---TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred ---cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 00000 000011 123468999999987732 345677777764
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=2.3e-07 Score=78.37 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 199 HILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 199 ~l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+...-..+++|++.....+.-.+..+. ..++||+|+||+|||++++.+++.+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTSSS------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhhccccccccchHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3444455678999887777777766531 1389999999999999999999875
No 44
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.46 E-value=1.2e-08 Score=92.53 Aligned_cols=105 Identities=16% Similarity=0.090 Sum_probs=53.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
.+|+|++.+++.+...+..-.....-.....+...++||+||||||||++++++++.+...++..........+. .
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~----~ 86 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV----G 86 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS----S
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc----c
Confidence 457787766666654432100000000000011237999999999999999999998765543322111110000 0
Q ss_pred ecCeeEeeeceeeec---CCcEEEEcCCCCCCHH
Q psy1366 286 ENGEWHLEAGALVLS---DGGVCCIDEFSSIKEH 316 (345)
Q Consensus 286 ~~~~~~~~~G~l~la---~~gi~~IDEidk~~~~ 316 (345)
.+ .. ...+.+..+ ..++++|||+|.+...
T Consensus 87 ~~-~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~ 118 (268)
T 2r62_A 87 LG-AS-RVRDLFETAKKQAPSIIFIDEIDAIGKS 118 (268)
T ss_dssp SC-SS-SSSTTHHHHHHSCSCEEEESCGGGTTC-
T ss_pred hH-HH-HHHHHHHHHHhcCCeEEEEeChhhhccc
Confidence 00 00 001112222 2489999999998654
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.46 E-value=8.9e-09 Score=87.09 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHhccCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 200 ILASICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 200 l~~s~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+...-..+++|++.....+.-.+..+. ..++||+|+||+|||++++.+++.+
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~------------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSRRT------------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSS------------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HhccccchhhcchHHHHHHHHHHhCCC------------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 334445678999877777777665431 1389999999999999999999875
No 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.45 E-value=1.8e-07 Score=87.90 Aligned_cols=103 Identities=27% Similarity=0.366 Sum_probs=67.9
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE-EcCCccCcCCceEEEEe
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL-TTGVGTTTAGLTVSALR 285 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~-~~~~~~~~~glt~~~~~ 285 (345)
.++|++.++..+.+++..|.... ...-|++|+||||+|||+|++.++..+...+. ++|.....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~-------~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHT-------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---------
T ss_pred HccCcHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---------
Confidence 57889888888888775431100 01138999999999999999999998754432 22211000
Q ss_pred ecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCCE
Q psy1366 286 ENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQT 329 (345)
Q Consensus 286 ~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~~ 329 (345)
+++. ...+ .+....|++|||++.+.+..++.|+.+|+...
T Consensus 90 -~~~l---~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 90 -QGDM---AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130 (334)
T ss_dssp -HHHH---HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred -HHHH---HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcc
Confidence 0000 0000 12356899999999999888899999998754
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-08 Score=95.86 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.+||+||||||||.|++++|..+...++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 3799999999999999999999988876544
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.43 E-value=2.7e-08 Score=91.89 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=48.6
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeec-------CCcEEEEcCC
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLS-------DGGVCCIDEF 310 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la-------~~gi~~IDEi 310 (345)
....+||+||||||||+|++++++.+...++....+.....+. .+.... + ...+..| ..+|++|||+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~----g~~~~~-i-~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNA----GEPAKL-I-RQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC-------HHHHH-H-HHHHHHHHHHHTTSSCCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccC----chhHHH-H-HHHHHHHHHHHhcCCCeEEEEech
Confidence 3358999999999999999999998876554332111100000 000000 0 0112222 5789999999
Q ss_pred CCCCH-------------HhHHHHHHHHhC
Q psy1366 311 SSIKE-------------HDRTSIHEAMEQ 327 (345)
Q Consensus 311 dk~~~-------------~~~~~l~eame~ 327 (345)
|++.. ..+..|++.|+.
T Consensus 109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~ 138 (293)
T 3t15_A 109 DAGAGRMGGTTQYTVNNQMVNATLMNIADN 138 (293)
T ss_dssp C--------------CHHHHHHHHHHHHHC
T ss_pred hhhcCCCCCCccccchHHHHHHHHHHHhcc
Confidence 98765 234889999874
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.41 E-value=2.9e-08 Score=91.91 Aligned_cols=115 Identities=19% Similarity=0.092 Sum_probs=61.4
Q ss_pred ccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEe
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALR 285 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~ 285 (345)
+|.|++.+|+.+.-.+...... .......++...++||+||||||||+++++++..+...++..........+. .
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~----g 91 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF----G 91 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH----T
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc----C
Confidence 5778877777665544310000 0000000112248999999999999999999999876554322110000000 0
Q ss_pred ecCeeEeeeceeeec---CCcEEEEcCCCCCCHH--------------hHHHHHHHHhC
Q psy1366 286 ENGEWHLEAGALVLS---DGGVCCIDEFSSIKEH--------------DRTSIHEAMEQ 327 (345)
Q Consensus 286 ~~~~~~~~~G~l~la---~~gi~~IDEidk~~~~--------------~~~~l~eame~ 327 (345)
+... ...+.+..| ..+++||||+|.+... .+..|+..|+.
T Consensus 92 ~~~~--~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 92 ESEA--NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp TCTT--HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred chHH--HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 0000 001112222 3589999999976543 35778888863
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=4.3e-08 Score=95.18 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.+||+||||||||.|++++|..+...++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4799999999999999999999988776544
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.39 E-value=2.9e-07 Score=90.13 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=38.3
Q ss_pred ccCcccccchHHHHHHHHHH---hCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 203 SICPAIYGLYLVKLCLAVVL---AGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 203 s~~p~i~G~~~vk~~i~l~l---~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
....++.|++.+|..+...+ ..|. ....++||+||||||||.+++++++.++
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~----------~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKK----------MAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTC----------CTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCC----------CCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 35578999999888654332 2221 1113899999999999999999999876
No 52
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=3.8e-08 Score=90.82 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=67.3
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC--C----eEEEcCCccCcC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP--R----SVLTTGVGTTTA 277 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~--~----~~~~~~~~~~~~ 277 (345)
-..+++|++.++..+.-.+..+. ..|+||+||||+|||++++.+++.+. . .+...... ..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~--~~ 80 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN------------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ER 80 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC------------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS--TT
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC------------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc--cc
Confidence 34568899998887776665441 13799999999999999999998641 1 12222111 11
Q ss_pred CceEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 GLTVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 glt~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
|.. ..++. ..+. ....+..++.++++|||+|.++.+.+++|+..||+
T Consensus 81 ~~~--~~~~~~~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~ 128 (319)
T 2chq_A 81 GID--VVRHKIKEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (319)
T ss_dssp CTT--TSSHHHHHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS
T ss_pred ChH--HHHHHHHHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh
Confidence 100 00000 0000 00111124578999999999999999999999987
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.36 E-value=2.1e-07 Score=81.50 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=67.0
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc----------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG---------- 273 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~---------- 273 (345)
...+++|++.++..+..++..+. ....++|+|+||+|||++++.+++.+..........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-----------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-----------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-----------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 44578999988888887776551 113699999999999999999987653211100000
Q ss_pred --cCcCCceEEEEeecCeeE--ee--ecee----eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 --TTTAGLTVSALRENGEWH--LE--AGAL----VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 --~~~~glt~~~~~~~~~~~--~~--~G~l----~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.....+.. ......... +. ...+ ......+++|||++.+++..++.|+..|++
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~ 152 (250)
T 1njg_A 90 EQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 152 (250)
T ss_dssp HTTCCSSEEE-EETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS
T ss_pred hccCCcceEE-ecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc
Confidence 00001100 000000000 00 0000 112357999999999999999999999986
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=6.4e-08 Score=93.27 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=27.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.|||+||||||||.|++++|..+...++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4799999999999999999999988776544
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.31 E-value=1e-07 Score=85.85 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHh--CCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 205 CPAIYGLYLVKLCLAVVLA--GGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~--~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..+|.|++.+|+.+...+. .........+ .+...++||+||||||||+++++++..++.+++
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC--CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 3468888888876654321 1101000001 122347999999999999999999998775443
No 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=7.8e-08 Score=88.84 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=67.6
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC------eEEEcCCccCcC
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR------SVLTTGVGTTTA 277 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~------~~~~~~~~~~~~ 277 (345)
...+++|++.++..+.-.+..+.. .|+||+||||+|||++++.+++.+.. .++.... ...
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~ 84 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNM------------PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDR 84 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCC------------CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCC
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCC------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--ccc
Confidence 345688999998888888776511 36999999999999999999887421 1222211 111
Q ss_pred CceEEEEeec-CeeEeeeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 GLTVSALREN-GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 glt~~~~~~~-~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+. ...++- ..+......+......+++|||++.++...+++|+..||+
T Consensus 85 ~~--~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 133 (323)
T 1sxj_B 85 GI--DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL 133 (323)
T ss_dssp SH--HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH
T ss_pred Ch--HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc
Confidence 10 000000 0000000001012367999999999999999999999986
No 57
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=6.7e-08 Score=93.74 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.+||+||||||||.+++++|..+...++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4799999999999999999999988876554
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=9.2e-08 Score=93.01 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=27.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-.|||+||||||||.|++++|..+...++..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 3799999999999999999999988876544
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=9.3e-08 Score=92.65 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=40.4
Q ss_pred cccccchHHHHHHHHHHhCCCc---ccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVG---RGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~---~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
-+|.|.+.+|..|.-.+.-... ....-| ++..-.+||+||||||||.+++++|..+...++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g--~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIG--IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC--CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCC--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4678887777666444331100 000001 11223699999999999999999999998877654
No 60
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.28 E-value=5.6e-07 Score=84.92 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=67.1
Q ss_pred cCcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCc----------
Q psy1366 204 ICPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVG---------- 273 (345)
Q Consensus 204 ~~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~---------- 273 (345)
-..+++|++.+...+..++..|. ....+||+||||+|||++++.+++.+..........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-----------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-----------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-----------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 34568999988888888776551 112579999999999999999998664211000000
Q ss_pred --cCcCCceEEEEeec----CeeE--ee-ecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 274 --TTTAGLTVSALREN----GEWH--LE-AGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 274 --~~~~glt~~~~~~~----~~~~--~~-~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.....+.. ....+ ..+. ++ .... ..+...+++|||++.++...+++|+..||+
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~ 145 (373)
T 1jr3_A 83 EQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (373)
T ss_dssp HTSCCSSCEE-EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS
T ss_pred hccCCCceEE-ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc
Confidence 00001100 00000 0000 00 0000 123457999999999999999999999986
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.26 E-value=1.6e-07 Score=92.87 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSAL 284 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~ 284 (345)
.+|.|++.++..+.-.+...... ........+...++||+||||||||.+++++++.+...++..........+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~---- 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA---- 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc----
Confidence 45888877776665443210000 0000000122248999999999999999999999876654322110000000
Q ss_pred eecCeeEeeeceeeecC---CcEEEEcCCCCCCH-----------HhHHHHHHHHhC
Q psy1366 285 RENGEWHLEAGALVLSD---GGVCCIDEFSSIKE-----------HDRTSIHEAMEQ 327 (345)
Q Consensus 285 ~~~~~~~~~~G~l~la~---~gi~~IDEidk~~~-----------~~~~~l~eame~ 327 (345)
+.......+.+..|. .+++||||+|.+.. ..+..|+..|+.
T Consensus 280 --g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 280 --GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp --THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc
Confidence 000000122233333 35999999976543 567889999983
No 62
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=9.6e-07 Score=87.83 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHhCCC-------cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGV-------GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAG 278 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~-------~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~g 278 (345)
.++.|++.++..+.-.+.... .+...++. ....++||+||||||||++++++++.++..++..........
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~--~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGS--GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTST--TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCC--CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchH
Confidence 468899888877776665411 11000110 112489999999999999999999998765543221111000
Q ss_pred -ceEEEEee------cCeeEeee--ceeeecCCcEEEEcCCCCCCHHhH---HHHHHHHhCC
Q psy1366 279 -LTVSALRE------NGEWHLEA--GALVLSDGGVCCIDEFSSIKEHDR---TSIHEAMEQQ 328 (345)
Q Consensus 279 -lt~~~~~~------~~~~~~~~--G~l~la~~gi~~IDEidk~~~~~~---~~l~eame~~ 328 (345)
+.....++ -..+.-.+ .......++|++|||+|.+...++ ..|...|+..
T Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 117 TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 00000000 00000000 001124568999999999987666 7888888764
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.20 E-value=1.5e-06 Score=76.41 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEFSSIK 314 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~ 314 (345)
.++||+||||+|||++++.+++.+.. ..+....... ..+ ...+ .+...++++|||++.+.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA------------SIS---TALLEGLEQFDLICIDDVDAVA 117 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG------------GSC---GGGGTTGGGSSEEEEETGGGGT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH------------HHH---HHHHHhccCCCEEEEecccccc
Confidence 38999999999999999999876542 1222211000 000 0000 12457899999999998
Q ss_pred HHh--HHHHHHHHh
Q psy1366 315 EHD--RTSIHEAME 326 (345)
Q Consensus 315 ~~~--~~~l~eame 326 (345)
... +..|+++|+
T Consensus 118 ~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 118 GHPLWEEAIFDLYN 131 (242)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 765 777887754
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.19 E-value=6.1e-07 Score=88.19 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=56.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCC----------eEEEcCCccC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPR----------SVLTTGVGTT 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~----------~~~~~~~~~~ 275 (345)
..|+|++.....+.-.+.... ..|+||+||||||||.+++.+++.+.+ .++....+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCcHHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 358999888877777776431 138999999999999999999987522 22211111
Q ss_pred cCCceEEEEeecCeeEeee-ce---eeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 276 TAGLTVSALRENGEWHLEA-GA---LVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 276 ~~glt~~~~~~~~~~~~~~-G~---l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
+ +..|+|.... +. +..+.++|+||| ...+.++.|+.+|+.+.+.+
T Consensus 246 ------~--~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g~v~v 294 (468)
T 3pxg_A 246 ------T--KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGELQC 294 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSCEE
T ss_pred ------c--cccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCCCEEE
Confidence 0 0011111000 01 112347899999 55567788999999886654
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.16 E-value=2.5e-07 Score=91.01 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=59.9
Q ss_pred cccccchHHHHHHHHHHh--CCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccC---cCCce
Q psy1366 206 PAIYGLYLVKLCLAVVLA--GGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTT---TAGLT 280 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~--~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~---~~glt 280 (345)
.+|.|++.+|..+.-... ........-|. +-..++||+||||||||+|+++++..++.+++....... ..|..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~--~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~ 93 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA--RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC--CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC--CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhccc
Confidence 467788777665543321 11111001111 122369999999999999999999887765543211110 01100
Q ss_pred EEEEeecCeeEeeeceeeec---CCcEEEEcCCCCCCH--------------HhHHHHHHHHh
Q psy1366 281 VSALRENGEWHLEAGALVLS---DGGVCCIDEFSSIKE--------------HDRTSIHEAME 326 (345)
Q Consensus 281 ~~~~~~~~~~~~~~G~l~la---~~gi~~IDEidk~~~--------------~~~~~l~eame 326 (345)
.. ...+.+..| ...|+||||+|.+.. ..++.|+..|+
T Consensus 94 ~~---------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 94 AA---------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp HH---------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh
Confidence 00 001112222 356999999998754 24567777775
No 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=3e-06 Score=79.53 Aligned_cols=48 Identities=23% Similarity=0.112 Sum_probs=36.8
Q ss_pred CcccccchHHHHHHHHHH-hCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh-hCC
Q psy1366 205 CPAIYGLYLVKLCLAVVL-AGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR-MSP 264 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l-~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~-~~~ 264 (345)
+.+++|++.+...+.-++ ..+ +. .|+||+||||+|||++++.+++ +.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred HHHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 346789998888777666 333 11 3699999999999999999998 543
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.14 E-value=2.8e-06 Score=70.35 Aligned_cols=67 Identities=12% Similarity=0.242 Sum_probs=47.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEH 316 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~ 316 (345)
.++|+|++|+|||+|++.++..... .+|..+.. +... + .+.+..+++|||++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~----------------~~~~--~-~~~~~~lLilDE~~~~~~~ 98 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS----------------MPLT--D-AAFEAEYLAVDQVEKLGNE 98 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT----------------SCCC--G-GGGGCSEEEEESTTCCCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH----------------hhHH--H-HHhCCCEEEEeCccccChH
Confidence 7999999999999999999987632 22222211 0000 1 1345689999999999887
Q ss_pred hHHHHHHHHh
Q psy1366 317 DRTSIHEAME 326 (345)
Q Consensus 317 ~~~~l~eame 326 (345)
.+..|.+.|+
T Consensus 99 ~~~~l~~li~ 108 (149)
T 2kjq_A 99 EQALLFSIFN 108 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888888764
No 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.14 E-value=1.4e-07 Score=85.67 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=47.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeecee---eecCCcEEEEcCCCCC---
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGAL---VLSDGGVCCIDEFSSI--- 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l---~la~~gi~~IDEidk~--- 313 (345)
.++||+||||||||++++++++.....++.........|..... . .+. + ...+ ..+..++++|||+|.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~-~-~~~--~-~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA-K-CQA--M-KKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH-H-HHH--H-HHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH-H-HHH--H-HHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 59999999999999999999998765543221111111110000 0 000 0 0001 1234789999999986
Q ss_pred -------CHHhHHHHHHHHh
Q psy1366 314 -------KEHDRTSIHEAME 326 (345)
Q Consensus 314 -------~~~~~~~l~eame 326 (345)
....+..|.+.|+
T Consensus 140 ~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 140 VPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp BTTTTBCCHHHHHHHHHHTT
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 4445566666665
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.12 E-value=3e-06 Score=88.07 Aligned_cols=47 Identities=23% Similarity=0.180 Sum_probs=36.4
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
...++|++.....+.-.+... ...|+||+||||||||++++.+++.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 345889987777766666543 11489999999999999999999865
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.10 E-value=1e-06 Score=92.91 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=56.4
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC----------CCeEEEcCCcc
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS----------PRSVLTTGVGT 274 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~----------~~~~~~~~~~~ 274 (345)
...++|++.....+.-.+..+. ..|+||+||||||||++++.+++.+ ...++....+
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~------------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 235 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG- 235 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS------------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred CcccCCcHHHHHHHHHHHhcCC------------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH-
Confidence 3458899877777777665441 1389999999999999999999875 2222221111
Q ss_pred CcCCceEEEEeecCeeEee-eceeee---c-CCcEEEEcCCCCCC--------HHhHHHHHHHHhCCEEEE
Q psy1366 275 TTAGLTVSALRENGEWHLE-AGALVL---S-DGGVCCIDEFSSIK--------EHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 275 ~~~glt~~~~~~~~~~~~~-~G~l~l---a-~~gi~~IDEidk~~--------~~~~~~l~eame~~~i~i 332 (345)
.+.+.. +..+++.-. ...+.. . ...|+||||++.+. .+..+.|..+|+.+.+.+
T Consensus 236 ---~l~~g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~ 302 (854)
T 1qvr_A 236 ---SLLAGA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRL 302 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCE
T ss_pred ---HhhccC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEE
Confidence 111000 000111000 000111 1 24599999999987 445667888998876543
No 71
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=2.6e-06 Score=79.01 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC-------CCeEEEcCCccCcCCceEE
Q psy1366 210 GLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS-------PRSVLTTGVGTTTAGLTVS 282 (345)
Q Consensus 210 G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~-------~~~~~~~~~~~~~~glt~~ 282 (345)
||+++...+.-++-.| + ..++||+||||+|||++++.+++.. |.-......+ ...+. .
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-~~~~i--d 65 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-ENIGI--D 65 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-SCBCH--H
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-CCCCH--H
Confidence 5666666676676655 2 2599999999999999999998741 1111111110 00000 0
Q ss_pred EEeecCeeEeeecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 283 ALRENGEWHLEAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+|+--++ +... ..++..|++|||+|.|+...+++|+..||+
T Consensus 66 ~ir~li~~---~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe 108 (305)
T 2gno_A 66 DIRTIKDF---LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE 108 (305)
T ss_dssp HHHHHHHH---HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS
T ss_pred HHHHHHHH---HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC
Confidence 00110000 0000 124567999999999999999999999998
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.05 E-value=7.4e-07 Score=92.69 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=58.1
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC----------CeEEEcCCccC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP----------RSVLTTGVGTT 275 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~----------~~~~~~~~~~~ 275 (345)
..++|++...+.+...+..... .|+||+||||||||++++.+++.+. ..++....
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~------------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK------------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCchHHHHHHHHHHhCCCC------------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---
Confidence 4589998888888877765311 3899999999999999999998852 22221111
Q ss_pred cCCceEEEEeecCeeEee----eceeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 276 TAGLTVSALRENGEWHLE----AGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 276 ~~glt~~~~~~~~~~~~~----~G~l~la~~gi~~IDEidk~~~~~~~~l~eame~~~i~i 332 (345)
| + +-.|++... -+.+..+.++|+||| ...+.++.|+.+|+.+.+.+
T Consensus 245 --g---~--~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~~v~~ 294 (758)
T 3pxi_A 245 --G---T--KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGELQC 294 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSCEE
T ss_pred --c---c--cccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcCCEEE
Confidence 0 0 001111100 011122457899999 55567888999999887765
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.04 E-value=1.5e-06 Score=85.85 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
++||+||||||||+|+++++..++.++
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 599999999999999999999887544
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=1.9e-06 Score=80.78 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc------------CcCC
Q psy1366 211 LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT------------TTAG 278 (345)
Q Consensus 211 ~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~------------~~~g 278 (345)
++.+...+.-++..| |....+||+||||+|||++++.+++.+.......+... +...
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 456666666666655 11124999999999999999999986532110000000 0001
Q ss_pred ceEEEEee--cCeeEe--------eecee-eecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 279 LTVSALRE--NGEWHL--------EAGAL-VLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 279 lt~~~~~~--~~~~~~--------~~G~l-~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
+.. +..+ +..... ..... ..+...|++|||+|+|+.+.+++|+..||+-
T Consensus 76 ~~~-~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep 135 (334)
T 1a5t_A 76 YYT-LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP 135 (334)
T ss_dssp EEE-ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC
T ss_pred EEE-EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC
Confidence 100 0000 000000 00000 1234689999999999999999999999973
No 75
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.97 E-value=1.3e-05 Score=74.48 Aligned_cols=79 Identities=13% Similarity=0.277 Sum_probs=45.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC---CC-eEEEcCCccCcCCceEEEEeecCeeEeeecee--eecCCcEEEEcCCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS---PR-SVLTTGVGTTTAGLTVSALRENGEWHLEAGAL--VLSDGGVCCIDEFSSI 313 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~---~~-~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l--~la~~gi~~IDEidk~ 313 (345)
.+++|+||||||||+|++++++.+ .. .++.+.... ...+... ... +. ...+ ...+.++++|||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-~~~~~~~-~~~-~~----~~~~~~~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-AQAMVEH-LKK-GT----INEFRNMYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHHHHH-HHH-TC----HHHHHHHHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-HHHHHHH-HHc-Cc----HHHHHHHhcCCCEEEEcCcccc
Confidence 389999999999999999999876 22 223321100 0000000 000 00 0000 1234789999999998
Q ss_pred CH--HhHHHHHHHH
Q psy1366 314 KE--HDRTSIHEAM 325 (345)
Q Consensus 314 ~~--~~~~~l~eam 325 (345)
.. ..|..++..+
T Consensus 111 ~~~~~~~~~l~~~l 124 (324)
T 1l8q_A 111 SGKERTQIEFFHIF 124 (324)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 85 5566666665
No 76
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.94 E-value=6.6e-07 Score=92.94 Aligned_cols=111 Identities=21% Similarity=0.144 Sum_probs=66.1
Q ss_pred ccccchHHHHHHHHHHhCCCcc-cCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCcc---CcCCceEE
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGR-GGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT---TTAGLTVS 282 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~-~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~---~~~glt~~ 282 (345)
+|.|.+.+|+.+.-++.-.... ........+....+||+||||||||.++++++..+...++...... ...|-+..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~ 557 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 557 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHH
Confidence 4678899999887665432211 0001112344458999999999999999999999988776543211 11121111
Q ss_pred EEeecCeeEeeeceeee---cCCcEEEEcCCCCCCHH--------------hHHHHHHHHh
Q psy1366 283 ALRENGEWHLEAGALVL---SDGGVCCIDEFSSIKEH--------------DRTSIHEAME 326 (345)
Q Consensus 283 ~~~~~~~~~~~~G~l~l---a~~gi~~IDEidk~~~~--------------~~~~l~eame 326 (345)
.++ -.+.. +...|+||||||.+-.. ..+.|+..|+
T Consensus 558 ~vr---------~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~md 609 (806)
T 3cf2_A 558 NVR---------EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp HHH---------HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHh
Confidence 111 01111 23689999999986321 2456777776
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.90 E-value=3.9e-06 Score=79.40 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeee--ceeeeCCCCChHHHHHHHHHhhCCC-----eEEEcCCccCc-C
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAES--HLLLVGDPGTGKSEILKFAKRMSPR-----SVLTTGVGTTT-A 277 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~--~iLl~G~pGtGKs~l~~~i~~~~~~-----~~~~~~~~~~~-~ 277 (345)
+.++|++.....+...+...... +... +++|+|+||+|||++++.+++.+.. .++........ .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56889877666665555431000 0012 7999999999999999999987643 23333211110 0
Q ss_pred CceEEEEeecCeeEeeec----e-------eeecC--CcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 278 GLTVSALRENGEWHLEAG----A-------LVLSD--GGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 278 glt~~~~~~~~~~~~~~G----~-------l~la~--~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
.+.......-+...-..| . ...+. .-+++|||++.++.+.+..|..++++
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE 151 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh
Confidence 000000000000000000 0 00112 33999999999999999999999964
No 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.88 E-value=5.3e-06 Score=77.29 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=22.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+++|+|+||||||.+++++++.+
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999876
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.86 E-value=6.7e-07 Score=92.87 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=40.0
Q ss_pred cccccchHHH----HHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 206 PAIYGLYLVK----LCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 206 p~i~G~~~vk----~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|-|.+.+| ..+.+.|... ... ....++..-+|||+||||||||+|++++++.+...++..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p-~~f--~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHP-ALF--KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCC-GGG--TSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred hhhcCHHHHHHHHHHHHHHHccCH-HHH--hhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 4677876554 4444434321 111 111223345899999999999999999999988766543
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=6.3e-07 Score=93.75 Aligned_cols=62 Identities=23% Similarity=0.148 Sum_probs=42.7
Q ss_pred cccccchHHHHHHHHHHhCCCccc-CCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRG-GEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~-~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.++.|++.+|..+.-.+.-..... ......++..-++||+||||||||+|+++++..+...+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 367888999988876654322111 11111223445899999999999999999999886554
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=3e-06 Score=88.65 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=60.1
Q ss_pred cccccchHHHHHHHHHHhCCC-cccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEE
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGV-GRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSAL 284 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~-~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~ 284 (345)
.+|.|++.+++.+.-.+.... .........++..-++||+||||||||+|+++++..++..++..........+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~----- 278 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL----- 278 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh-----
Confidence 457887655554443332100 00000111123334899999999999999999999987754332110000000
Q ss_pred eecCeeEee-ecee---eecCCcEEEEcCCCCCCH-----------HhHHHHHHHHhC
Q psy1366 285 RENGEWHLE-AGAL---VLSDGGVCCIDEFSSIKE-----------HDRTSIHEAMEQ 327 (345)
Q Consensus 285 ~~~~~~~~~-~G~l---~la~~gi~~IDEidk~~~-----------~~~~~l~eame~ 327 (345)
.++..-. ...+ .....+++||||++.+.+ ..+..|++.|+.
T Consensus 279 --~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 279 --AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp --TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS
T ss_pred --hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh
Confidence 0000000 0001 112357999999987643 345678888874
No 82
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.73 E-value=1.9e-05 Score=74.43 Aligned_cols=50 Identities=28% Similarity=0.224 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..++|++.....+...+...... ....+++|+||||||||++++.+++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--------EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--------CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56889988877777665321100 111489999999999999999999876
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=8.1e-07 Score=75.42 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=46.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC-----CeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCC--C
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP-----RSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFS--S 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~-----~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEid--k 312 (345)
-+++|+||||+|||+|++.++..+. ..++.+.... ...+... ...+.. ..-.-.+.+..+++|||++ .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL-IFRLKHL--MDEGKD--TKFLKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH-HHHHHHH--HHHTCC--SHHHHHHHTCSEEEEETCSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH-HHHHHHH--hcCchH--HHHHHHhcCCCEEEEeCCCCCc
Confidence 3899999999999999999998763 1112111000 0000000 000000 0000112356899999998 5
Q ss_pred CCHHhHHHHHHHHh
Q psy1366 313 IKEHDRTSIHEAME 326 (345)
Q Consensus 313 ~~~~~~~~l~eame 326 (345)
+++..+..|++.++
T Consensus 114 ~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 114 LSDWQRELISYIIT 127 (180)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777788877774
No 84
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.68 E-value=2.6e-05 Score=67.89 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=46.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHh-HH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHD-RT 319 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~-~~ 319 (345)
++|++||||||||+++.++++.+...+.... .+ ....| +. .+.+.-+++|||+|...-.. ..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~fa-ns-----------~s~f~-l~----~l~~~kIiiLDEad~~~~~~~d~ 122 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISFV-NS-----------TSHFW-LE----PLTDTKVAMLDDATTTCWTYFDT 122 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECCCC-CS-----------SSCGG-GG----GGTTCSSEEEEEECHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeEE-ec-----------cchhh-hc----ccCCCCEEEEECCCchhHHHHHH
Confidence 7999999999999999999987643221100 00 00111 11 23345699999998432111 23
Q ss_pred HHHHHHhCCEEEE
Q psy1366 320 SIHEAMEQQTISV 332 (345)
Q Consensus 320 ~l~eame~~~i~i 332 (345)
.+..+|+...+++
T Consensus 123 ~lrn~ldG~~~~i 135 (212)
T 1tue_A 123 YMRNALDGNPISI 135 (212)
T ss_dssp HCHHHHHTCCEEE
T ss_pred HHHHHhCCCcccH
Confidence 5667777777666
No 85
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=3.1e-05 Score=75.41 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=46.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC-----Ce-EEEcCCccCcCCceEEEEeecCeeEeeeceee--ec-CCcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP-----RS-VLTTGVGTTTAGLTVSALRENGEWHLEAGALV--LS-DGGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~-----~~-~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~--la-~~gi~~IDEi 310 (345)
.+++|+||||+|||+|++++++.+. .. ++++..... ..+... .+ .+. ...+. .. +..+++|||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~-~~-~~~----~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDS-MK-EGK----LNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHH-HH-TTC----HHHHHHHHTTTCSEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHH-HH-ccc----HHHHHHHhcCCCCEEEEeCc
Confidence 3899999999999999999998662 11 232211000 000000 00 000 00111 12 5789999999
Q ss_pred CCCCH--HhHHHHHHHHh
Q psy1366 311 SSIKE--HDRTSIHEAME 326 (345)
Q Consensus 311 dk~~~--~~~~~l~eame 326 (345)
+.+.. ..|..|+..|+
T Consensus 204 ~~l~~~~~~q~~l~~~l~ 221 (440)
T 2z4s_A 204 QFLIGKTGVQTELFHTFN 221 (440)
T ss_dssp GGGSSCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHH
Confidence 99876 56778877764
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.54 E-value=0.00012 Score=84.54 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEee
Q psy1366 214 VKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLE 293 (345)
Q Consensus 214 vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~ 293 (345)
.-..+..|+..+ ...++.||||||||.+++.+|+.+++.+++..... ++..... +. +-
T Consensus 634 ~~~tl~~Al~~~--------------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e---~ld~~~l---g~--~~ 691 (2695)
T 4akg_A 634 GFATLTDSLHQK--------------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD---SFDYQVL---SR--LL 691 (2695)
T ss_dssp HHHHHHHHHHTT--------------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS---SCCHHHH---HH--HH
T ss_pred HHHHHHHHHHhC--------------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC---CCChhHh---hH--HH
Confidence 345566666655 57899999999999999999999998765542211 1111000 00 00
Q ss_pred eceeeecCCcEEEEcCCCCCCHHhHHHH-------HHHHhCCEEEEeeCCe
Q psy1366 294 AGALVLSDGGVCCIDEFSSIKEHDRTSI-------HEAMEQQTISVAKDKE 337 (345)
Q Consensus 294 ~G~l~la~~gi~~IDEidk~~~~~~~~l-------~eame~~~i~i~k~gi 337 (345)
.|+ ...|.++|+|||++++++...++ +++|.++..++.-.|-
T Consensus 692 ~g~--~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~ 740 (2695)
T 4akg_A 692 VGI--TQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEE 740 (2695)
T ss_dssp HHH--HHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSS
T ss_pred HHH--HhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCc
Confidence 121 13478999999999999999888 7888777655555553
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.46 E-value=0.0002 Score=82.86 Aligned_cols=96 Identities=25% Similarity=0.212 Sum_probs=50.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC-eEE-EcCCccCcCCceEEEEeec-CeeEeeeceee----ecCCcEEEEcCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR-SVL-TTGVGTTTAGLTVSALREN-GEWHLEAGALV----LSDGGVCCIDEFSS 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~-~~~-~~~~~~~~~glt~~~~~~~-~~~~~~~G~l~----la~~gi~~IDEidk 312 (345)
.|+||+||||||||.+++.+....+. .+. +.....+.+.......... ..-....|.+. .....|+||||+|.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccc
Confidence 59999999999999999555544433 221 1111111111000000000 00000112211 12346999999887
Q ss_pred CCHH------hHHHHHHHHhCCEEEEeeC
Q psy1366 313 IKEH------DRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 313 ~~~~------~~~~l~eame~~~i~i~k~ 335 (345)
...+ ....|.+.||++.+...+.
T Consensus 1348 p~~d~yg~q~~lelLRq~le~gg~yd~~~ 1376 (2695)
T 4akg_A 1348 PKLDKYGSQNVVLFLRQLMEKQGFWKTPE 1376 (2695)
T ss_dssp SCCCSSSCCHHHHHHHHHHHTSSEECTTT
T ss_pred ccccccCchhHHHHHHHHHhcCCEEEcCC
Confidence 5443 5688899999876655443
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=66.80 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.+||+||||+|||+|+++++...+...
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 499999999999999999999887543
No 89
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.31 E-value=0.00054 Score=61.94 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=45.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEeeeceeeecCCcEEEEcCCCCCCHHhHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTS 320 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l~la~~gi~~IDEidk~~~~~~~~ 320 (345)
+++|+||||||||.+++++++.++..-.++ .+. ..+.+. .+.+.-+++.||.... .+.+..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn--~~~------------~~f~l~----~~~~k~i~l~Ee~~~~-~d~~~~ 166 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVN--WTN------------ENFPFN----DCVDKMVIWWEEGKMT-AKVVES 166 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECC--TTC------------SSCTTG----GGSSCSEEEECSCCEE-TTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceee--ccc------------cccccc----cccccEEEEeccccch-hHHHHH
Confidence 799999999999999999999765321111 110 111111 1123445566665544 455678
Q ss_pred HHHHHhCCEEEEe
Q psy1366 321 IHEAMEQQTISVA 333 (345)
Q Consensus 321 l~eame~~~i~i~ 333 (345)
+-.+|+-..+.|.
T Consensus 167 lr~i~~G~~~~id 179 (267)
T 1u0j_A 167 AKAILGGSKVRVD 179 (267)
T ss_dssp HHHHHTTCCEEC-
T ss_pred HHHHhCCCcEEEe
Confidence 8888886666653
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.28 E-value=0.00023 Score=83.14 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=53.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE--cCCc-cCcCCceEEEEeecCeeEeee--ceeeecC----CcEEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT--TGVG-TTTAGLTVSALRENGEWHLEA--GALVLSD----GGVCCIDEF 310 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~--~~~~-~~~~glt~~~~~~~~~~~~~~--G~l~la~----~gi~~IDEi 310 (345)
.|+||+||||||||.+++......+..... .-.. +++..+.... ....++.... |.+..+- ..|+||||+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~-e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTF-DHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHH-HHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHH-hhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 499999999999998876655544432211 1111 1111110000 0000111111 5554442 259999999
Q ss_pred CCCCHH------hHHHHHHHHhCCEEEEeeC
Q psy1366 311 SSIKEH------DRTSIHEAMEQQTISVAKD 335 (345)
Q Consensus 311 dk~~~~------~~~~l~eame~~~i~i~k~ 335 (345)
+....+ ....|++.||++.+...+.
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~ 1414 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEEEETTT
T ss_pred CCCCccccccccHHHHHHHHHHcCCeEECCC
Confidence 987654 5688999999887766443
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.16 E-value=2.7e-05 Score=72.16 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+++|+||||||||.|+++++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999997654
No 92
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.15 E-value=0.00016 Score=64.53 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
+++|+||||+|||+|+++++..+...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 49999999999999999999987643
No 93
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.02 E-value=0.00025 Score=64.24 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
+++|+||||+|||+|+++++..++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCC
Confidence 49999999999999999999988643
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.93 E-value=0.00052 Score=58.55 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhCCE
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQT 329 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~~~ 329 (345)
..+++|||+..++++....|...++++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~ 104 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI 104 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC
Confidence 4699999999998777777777877743
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.84 E-value=0.0014 Score=76.73 Aligned_cols=90 Identities=24% Similarity=0.315 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEEeecCeeEe
Q psy1366 213 LVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHL 292 (345)
Q Consensus 213 ~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~~~~~~~~~ 292 (345)
..-..+..||..+ ....+.||+|||||.+++.+++.+++.+++-... .+++...+ +. +
T Consensus 592 rcy~tl~~Al~~~--------------~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~---~~~d~~~~---g~--i 649 (3245)
T 3vkg_A 592 RCYLTLTQALESR--------------MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCD---EGFDLQAM---SR--I 649 (3245)
T ss_dssp HHHHHHHHHHHTT--------------CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECS---SCCCHHHH---HH--H
T ss_pred HHHHHHHHHHHhc--------------CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCC---CCCCHHHH---HH--H
Confidence 3455566666544 3567999999999999999999999987654221 12211100 10 1
Q ss_pred eeceeeecCCcEEEEcCCCCCCHHhHHHHHHHHh
Q psy1366 293 EAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAME 326 (345)
Q Consensus 293 ~~G~l~la~~gi~~IDEidk~~~~~~~~l~eame 326 (345)
-.|+. ..|..+|+|||++++.+...++.+.|.
T Consensus 650 ~~G~~--~~GaW~cfDEfNrl~~~vLSvv~~qi~ 681 (3245)
T 3vkg_A 650 FVGLC--QCGAWGCFDEFNRLEERILSAVSQQIQ 681 (3245)
T ss_dssp HHHHH--HHTCEEEEETTTSSCHHHHHHHHHHHH
T ss_pred HhhHh--hcCcEEEehhhhcCCHHHHHHHHHHHH
Confidence 13322 347889999999999999999888665
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0037 Score=60.84 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC---C-eEEEcCCccCc-------CCceEEE--------Eee-c--CeeEeeeceee
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP---R-SVLTTGVGTTT-------AGLTVSA--------LRE-N--GEWHLEAGALV 298 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~---~-~~~~~~~~~~~-------~glt~~~--------~~~-~--~~~~~~~G~l~ 298 (345)
++++.|+||||||+++..+.+.+. . .+........+ .+..+.- ... . ..|.. ...-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~-~~~~~ 125 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQ-KEVPD 125 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEE-CSCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcc-ccccc
Confidence 899999999999999998876552 1 23222111110 0111110 000 0 11110 11112
Q ss_pred ecCCcEEEEcCCCCCCHHhHHHHHHHHhC
Q psy1366 299 LSDGGVCCIDEFSSIKEHDRTSIHEAMEQ 327 (345)
Q Consensus 299 la~~gi~~IDEidk~~~~~~~~l~eame~ 327 (345)
+....+++|||+..++...+..|...++.
T Consensus 126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp CSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred ccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 33568999999999999999999988863
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0015 Score=61.32 Aligned_cols=50 Identities=20% Similarity=0.044 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+++|++.....+...+...... ....+++|+||||||||++++.+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56889877666555443321000 011389999999999999999999864
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.45 E-value=0.0039 Score=63.00 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 211 LYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 211 ~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.-+.|+..++-++ .+++.|+||||||+++.++...
T Consensus 151 ~~~Q~~Ai~~~l~~~---------------~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 151 INWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp CCHHHHHHHHHHTBS---------------EEEEECCTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---------------CEEEEeCCCCCHHHHHHHHHHH
Confidence 455677777777544 8999999999999988776543
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.44 E-value=0.0011 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=22.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+++|+|+||||||+|+++++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999876
No 100
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0022 Score=59.90 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=36.7
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
...++|.+.....+.-.+...... ....+++|+|+||+|||+|++.+++.+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~--------~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE--------EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT--------CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356889988777776655431100 111389999999999999999999866
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.36 E-value=0.0039 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC--------C-CeEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS--------P-RSVLTTGV 272 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~--------~-~~~~~~~~ 272 (345)
...|+.|+||+|||.++....... + +.+|.++.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~ 47 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI 47 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecC
Confidence 368899999999999987754332 2 66765543
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.26 E-value=0.0032 Score=63.21 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=49.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC---CCeEEEcCCccCc-------CCceEEEEeecCee---EeeeceeeecCCcEEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS---PRSVLTTGVGTTT-------AGLTVSALRENGEW---HLEAGALVLSDGGVCCI 307 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~---~~~~~~~~~~~~~-------~glt~~~~~~~~~~---~~~~G~l~la~~gi~~I 307 (345)
.+++.|+||||||+++..+...+ +..+.....+..+ .|..+.-...--.+ .+....-...+..+++|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 89999999999999999887654 2223222111100 01111100000000 00000001123579999
Q ss_pred cCCCCCCHHhHHHHHHHHhCC
Q psy1366 308 DEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 308 DEidk~~~~~~~~l~eame~~ 328 (345)
||+..++......|++++..+
T Consensus 286 DEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 286 DEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp CCGGGCCHHHHHHHHTTSCTT
T ss_pred cCccCCCHHHHHHHHHhCcCC
Confidence 999999999888888887654
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.19 E-value=0.0035 Score=51.96 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|.|+|+||+|||++++.++..++..++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999998775443
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.18 E-value=0.0033 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+|.|+||+|||++++.+++.++..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 6899999999999999999999876544
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.92 E-value=0.004 Score=52.22 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|+|+|+||+|||++++.+++.++..++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 379999999999999999999887655543
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.89 E-value=0.0044 Score=51.24 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=25.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.+|+|.|.||+|||++++.+++.++..++-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 489999999999999999999976665543
No 107
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.88 E-value=0.0046 Score=51.54 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
+|+|+|+||+|||++++.+++.++..++-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 69999999999999999999887655443
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.79 E-value=0.0058 Score=50.32 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=24.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+|.|+||+|||++++.+++.++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5899999999999999999988665443
No 109
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.76 E-value=0.0054 Score=52.89 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+|+|.|+||+|||++++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 589999999999999999988876555433
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.75 E-value=0.0051 Score=52.54 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
-.|+|+|+||+|||++++.+++.++..++
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 38999999999999999999988765544
No 111
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.73 E-value=0.013 Score=53.81 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=38.2
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
+.++|.+.....+.-++..| ..++++|++|+|||+|++.+++..+ .+|...
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------------~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~ 62 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------------PLTLLLGIRRVGKSSLLRAFLNERP-GILIDC 62 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------------SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEH
T ss_pred HhcCChHHHHHHHHHHHhcC--------------CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEe
Confidence 35788877666666555433 2899999999999999999998775 555543
No 112
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.65 E-value=0.007 Score=50.99 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
-+.|+|+||+|||++++.++......++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEcc
Confidence 5789999999999999999986655565554
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.64 E-value=0.0055 Score=51.23 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=26.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|+|+|+||+|||++++.+++.++..++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4799999999999999999998876655443
No 114
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.62 E-value=0.006 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=22.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
++.|+|++|+|||+|++.++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.54 E-value=0.0076 Score=49.42 Aligned_cols=28 Identities=36% Similarity=0.606 Sum_probs=23.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|+|.|+||+|||++++.+ +..+..++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 6899999999999999999 766665544
No 116
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.51 E-value=0.0097 Score=50.57 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=24.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
-+.|+|++|+|||+|++.++.+.| .++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~ 38 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA-EIKISI 38 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS-SEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC-CeEEec
Confidence 578999999999999999999986 444443
No 117
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.46 E-value=0.013 Score=55.29 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred CcccccchHHHHHHHHHH-h---CCCcccCCCCCceeeeeceee--eCCCCChHHHHHHHHHhhC
Q psy1366 205 CPAIYGLYLVKLCLAVVL-A---GGVGRGGEDGSKVRAESHLLL--VGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l-~---~g~~~~~~~~~~~r~~~~iLl--~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.++|.+.....+.-.+ . .|.. ....++++ +|+||+|||+|++.+++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 356889876555554444 2 1200 01137888 9999999999999998765
No 118
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.46 E-value=0.0066 Score=52.30 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|+|.|+||+|||++++.+++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 58999999999999999998876655443
No 119
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.45 E-value=0.009 Score=50.33 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=24.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh-CCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM-SPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~-~~~~~~ 268 (345)
.+|+|+|+||+|||++++.+++. .+..++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 47999999999999999999998 554443
No 120
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.43 E-value=0.0079 Score=50.39 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=24.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|+|+|+||+|||++++.+++.++..++-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 59999999999999999999876655443
No 121
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.40 E-value=0.009 Score=49.30 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=24.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
.|+|.|+||+|||++++.+++.++..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 68999999999999999999977655543
No 122
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.40 E-value=0.0077 Score=49.95 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=20.0
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|+|.|+||+|||++++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999998
No 123
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.34 E-value=0.0079 Score=52.11 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.|+|+||||+||++.++.+++.++-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 589999999999999999999876544433
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.32 E-value=0.018 Score=54.13 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=48.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC----eEEEcCCccCc--CCceEEEE-eecC--eeEeeecee---eecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR----SVLTTGVGTTT--AGLTVSAL-RENG--EWHLEAGAL---VLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~----~~~~~~~~~~~--~glt~~~~-~~~~--~~~~~~G~l---~la~~gi~~ID 308 (345)
.++++||+|+|||++++.+....+. .+.+....... ......+. +..+ ...+ ..++ ...+.-++++|
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~-~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF-SEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH-HHHHHHHTTSCCSEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH-HHHHHHHhhhCcCEEecC
Confidence 7999999999999999999887642 23222211100 00000000 1100 0000 0111 23467899999
Q ss_pred CCCCCCHHhHHHHHHHHhCCEE
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQTI 330 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~~i 330 (345)
|.. +.+....++++.+.+..
T Consensus 204 Ep~--d~e~~~~~~~~~~~G~~ 223 (356)
T 3jvv_A 204 EMR--DLETIRLALTAAETGHL 223 (356)
T ss_dssp CCC--SHHHHHHHHHHHHTTCE
T ss_pred CCC--CHHHHHHHHHHHhcCCE
Confidence 997 46666677788777653
No 125
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.29 E-value=0.0089 Score=49.83 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=21.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|.|.||+|||++++.+++.++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 36999999999999999999988876665
No 126
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.0076 Score=50.47 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|+|+||+|||++++.+++.++..++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 47999999999999999999986655444
No 127
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.23 E-value=0.01 Score=49.22 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.++|+|+||+|||++++.++..++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 689999999999999999998765433
No 128
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.22 E-value=0.0093 Score=51.63 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
..|+|+|+||+|||++++.+++.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 479999999999999999999887655443
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.22 E-value=0.012 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||.|.|||+|++.++.+.|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 688999999999999999999884
No 130
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.011 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|++.+....+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999876
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.19 E-value=0.011 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|+||+|||++++.++...+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 37899999999999999999987754
No 132
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.17 E-value=0.011 Score=48.56 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+|.|.||+|||++++.+++.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999997665554
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.16 E-value=0.012 Score=50.26 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|.|+||+|||++++.+++.++..++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 37999999999999999999988764443
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.15 E-value=0.0082 Score=50.49 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|+||+|||++++.++....
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC
Confidence 3689999999999999999998743
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.15 E-value=0.011 Score=50.33 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
..|+|+|+||+|||++++.+++.++..++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 369999999999999999999876655543
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.11 E-value=0.034 Score=50.55 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=25.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC-eEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR-SVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~-~~~~~~ 271 (345)
.-++|.|+||+|||++++.+++.++. .+++++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47999999999999999999987753 344443
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.10 E-value=0.011 Score=49.70 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|.|.||+|||++++.+++.++..++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46999999999999999999987665443
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.09 E-value=0.01 Score=49.87 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
..|+|.|+||+|||++++.+++.++..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 33 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPL 33 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 4799999999999999999998765433
No 139
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.06 E-value=0.014 Score=52.14 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++|+|+||+|||++++.+++..+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 4789999999999999999987765443
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.06 E-value=0.073 Score=46.48 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.4
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.|+|+|++|+|||+|+..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34799999999999999999988643
No 141
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.04 E-value=0.011 Score=51.20 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=24.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
..|.|+|+||+|||++++.+++.++-....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 369999999999999999999876544433
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.00 E-value=0.013 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..++|+|+||+|||++++.+++.++.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 36899999999999999999998863
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.99 E-value=0.01 Score=49.96 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|.|.|+||+|||++++.+++.++..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 37999999999999999999987765544
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.97 E-value=0.029 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..++|+|+||+|||++++.+++.++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47999999999999999999998864
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.95 E-value=0.0073 Score=53.05 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCe
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKE 337 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi 337 (345)
..+++|||+.-++.+....+..+... .+.+--.|.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~-gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAEN-GFVVIISGL 124 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEECC
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhC-CCeEEEEec
Confidence 46999999999987754444443333 454444444
No 146
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.92 E-value=0.014 Score=50.89 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|.|+||+|||++++.+++.++...+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 47999999999999999999988765544
No 147
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.91 E-value=0.015 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.7
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+..+.|+++|++|+|||+|+.++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44579999999999999999998764
No 148
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.90 E-value=0.012 Score=51.46 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.+|+|+|+||+|||++++.+++.+...++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4799999999999999999998876555443
No 149
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.90 E-value=0.011 Score=51.06 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+|+|.|+||+|||++++.+++.++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999998766544443
No 150
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.86 E-value=0.022 Score=48.53 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=23.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.|.|.||+|+|||+|++.+.+..|..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 689999999999999999998877543
No 151
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.86 E-value=0.014 Score=51.70 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=25.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..|+|.|+||+|||++++.+++.++...+.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5899999999999999999998766555443
No 152
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.86 E-value=0.015 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+..++|+++|++|+|||+|+..+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3447999999999999999999865
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.85 E-value=0.014 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|+|.|+||+|||++++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998665
No 154
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.82 E-value=0.023 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.++++|++|+|||++++.++...+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 799999999999999999998764
No 155
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.80 E-value=0.012 Score=51.40 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
-|+|+||||+||++.++.+++.++-...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 5788999999999999999988765443
No 156
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.79 E-value=0.014 Score=49.16 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|.|.|+||+|||++++.+++.++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6999999999999999999997765444
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.78 E-value=0.014 Score=48.73 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=24.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|+|.|+||+|||++++.+++.++..++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 36999999999999999999987665444
No 158
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.77 E-value=0.013 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.|+|.|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.77 E-value=0.018 Score=48.98 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
..|+|.|+||+|||++++.+++.++..++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 369999999999999999999887654443
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.76 E-value=0.017 Score=48.85 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.|.|.|.||+|||++++.+++.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 588999999999999999999776543
No 161
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.74 E-value=0.013 Score=50.72 Aligned_cols=31 Identities=35% Similarity=0.606 Sum_probs=25.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..|+|+|+||+|||++++.+++.++..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4799999999999999999998776555433
No 162
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.72 E-value=0.015 Score=50.66 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=24.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.|+|.|+||+|||++++.+++.++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999998766554444
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.71 E-value=0.016 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.|+|++|+|||++++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999987
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.63 E-value=0.014 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+.|+|+||+|||++++.+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999995543
No 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.61 E-value=0.017 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 6889999999999999999998864
No 166
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.60 E-value=0.02 Score=51.17 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.|.|+|++|+|||++++.+++.++..++-+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 899999999999999999999777655443
No 167
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.59 E-value=0.015 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|+|.|+||+|||++++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 36999999999999999999987653
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.53 E-value=0.018 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.|+|++|+|||++++.++..++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998763
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.52 E-value=0.026 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.|+||+|+|||+|++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998744
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.50 E-value=0.019 Score=48.36 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|++.++.+.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999886
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.44 E-value=0.029 Score=51.56 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=35.4
Q ss_pred cccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHhhCC-CeEEEcC
Q psy1366 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSP-RSVLTTG 271 (345)
Q Consensus 206 p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~~~-~~~~~~~ 271 (345)
+.++|.+.....+.- +.. ..++++|++|+|||+|++.+++... ..+|...
T Consensus 13 ~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred HHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 457888766655554 322 1899999999999999999987653 3455543
No 172
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.43 E-value=0.025 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.0
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
...++|+++|++|+|||+|++++....+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3457999999999999999999987654
No 173
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.37 E-value=0.13 Score=45.36 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.0
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+|+|.||+|||+|+..+...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 34579999999999999999998754
No 174
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.31 E-value=0.017 Score=50.06 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|+|+|+||+|||++++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999987764
No 175
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.30 E-value=0.025 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|+||+|||+|+..+..-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999988753
No 176
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.29 E-value=0.024 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.|+++|+||+|||+|++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999864
No 177
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.28 E-value=0.027 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.|.|+|++|+|||++++.+++ .+..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~ 28 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYV 28 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEE
Confidence 589999999999999999999 55433
No 178
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.26 E-value=0.025 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999998763
No 179
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.23 E-value=0.073 Score=46.78 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=48.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC-eEEEcCCccCc---------CCce-EEEEeec----Cee-Eeeeceee------
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR-SVLTTGVGTTT---------AGLT-VSALREN----GEW-HLEAGALV------ 298 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~-~~~~~~~~~~~---------~glt-~~~~~~~----~~~-~~~~G~l~------ 298 (345)
++++.||+|+|||.++..++..... .+++.-..+.. -++. ......+ ... ...++.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~~~ 189 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKL 189 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHHHh
Confidence 5999999999999998877766543 33333221100 1222 2221110 000 00011110
Q ss_pred ecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 299 LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 299 la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
..+-++++|||++.+.......+.+.+...
T Consensus 190 ~~~~~llIiDEaH~l~~~~~~~i~~~~~~~ 219 (237)
T 2fz4_A 190 GNRFMLLIFDEVHHLPAESYVQIAQMSIAP 219 (237)
T ss_dssp TTTCSEEEEECSSCCCTTTHHHHHHTCCCS
T ss_pred cccCCEEEEECCccCCChHHHHHHHhccCC
Confidence 023589999999999887766666665543
No 180
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.22 E-value=0.027 Score=47.34 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC---CCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS---PRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~---~~~~~ 268 (345)
-|.|.|+||+|||++++.+++.+ +..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37899999999999999999886 44444
No 181
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.026 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999875
No 182
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.16 E-value=0.029 Score=45.54 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3479999999999999999998754
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.15 E-value=0.027 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 688999999999999999999986
No 184
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.12 E-value=0.025 Score=49.98 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=25.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..+.|.|+||+|||++++.+++.++..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 5899999999999999999998876544433
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.12 E-value=0.03 Score=49.71 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
..|.|+|++|+|||++++.+++.++...+.+|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 37999999999999999999987765544433
No 186
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.11 E-value=0.03 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988754
No 187
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.10 E-value=0.031 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.6
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|+.++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999999875
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.10 E-value=0.038 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-+.|.|++|+|||++++.+..++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998864
No 189
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.09 E-value=0.023 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+||+|+|||+|++.+....+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 789999999999999999998765
No 190
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.09 E-value=0.032 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+..-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4479999999999999999998754
No 191
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.08 E-value=0.029 Score=45.42 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=22.0
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.++|+++|++|+|||+|++.+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999999987643
No 192
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.07 E-value=0.029 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=21.8
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+..++|+++|++|+|||+|++.+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34579999999999999999888753
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.03 E-value=0.033 Score=47.44 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
.+.|+|++|+|||++++.++. ++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 588999999999999999998 44433
No 194
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.00 E-value=0.029 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=20.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|+||+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 68999999999999999988743
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.99 E-value=0.038 Score=47.45 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.+.+..+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 5889999999999999999998773
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.97 E-value=0.045 Score=46.74 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=23.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC-CeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP-RSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~-~~~~~~~ 271 (345)
-++|+|+||+|||+|++.++.... +.+|.+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 689999999999999999987222 2345544
No 197
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.97 E-value=0.031 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998753
No 198
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.97 E-value=0.031 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+++|++|+|||+|++++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999875
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.96 E-value=0.033 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.|.|.|.||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999865
No 200
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.95 E-value=0.027 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+..-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998764
No 201
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.91 E-value=0.027 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
+++.|+|++|+|||+|++.++.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999997653
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.89 E-value=0.033 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=22.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|++.+....+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 578999999999999999999887
No 203
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.88 E-value=0.033 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.3
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++.+..-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 479999999999999999998753
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.87 E-value=0.035 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.++|+||+|||++++.+++.++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999874
No 205
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.87 E-value=0.031 Score=47.22 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
+.+.|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 689999999999999999998764
No 206
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.86 E-value=0.029 Score=47.47 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCceeeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 233 GSKVRAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 233 ~~~~r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++.....+.|+++|++|+|||+|++.+..-
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 334455689999999999999999998864
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.85 E-value=0.033 Score=48.33 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLT 269 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~ 269 (345)
-+.|+||+|+|||+|++.++.+.|..++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 68899999999999999999988623443
No 208
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.84 E-value=0.041 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=20.0
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
-++|+|+||+|||+|++.++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999988
No 209
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.84 E-value=0.03 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998754
No 210
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.82 E-value=0.14 Score=45.11 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..+|+|+|+||+|||+|+..+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999874
No 211
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.77 E-value=0.03 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|++|+|||+|++.+...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998763
No 212
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.77 E-value=0.033 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|+++|++|+|||+|+..+..-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998653
No 213
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.77 E-value=0.047 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.|+|.|+||+|||++++.+++....
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~ 28 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPG 28 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999999999986433
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.75 E-value=0.029 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.|+|++|+|||+|++.++.+++
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998875
No 215
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.75 E-value=0.043 Score=48.90 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|+|.|.||+|||++++.+++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999986
No 216
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.74 E-value=0.033 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=22.1
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+|+++|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999988654
No 217
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.74 E-value=0.038 Score=46.15 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.4
Q ss_pred ceeeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 235 KVRAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 235 ~~r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+..++|+++|++|+|||+|++.+..-
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 3455689999999999999999998753
No 218
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.74 E-value=0.033 Score=47.12 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|.|.|+||+|||++++.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 4799999999999999999999873
No 219
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.73 E-value=0.037 Score=45.83 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|+.++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999875
No 220
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.70 E-value=0.037 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998864
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.69 E-value=0.036 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|+|+|.||+|||++++.++..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998764
No 222
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.68 E-value=0.036 Score=46.96 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
.|.|.|++|+|||++++.+++.++..++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999776555443
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.67 E-value=0.032 Score=48.74 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.8
Q ss_pred ceeeeCCCCChHHHHHHHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~ 260 (345)
-+.|+||+|+|||+|++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68899999999999999888
No 224
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.66 E-value=0.032 Score=45.21 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|++|+|||+|+..+..-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998753
No 225
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.63 E-value=0.028 Score=45.49 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.7
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.|+++|+||+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999998853
No 226
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.63 E-value=0.04 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.3
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
...+.|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4458999999999999999976654
No 227
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.61 E-value=0.038 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 228
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.61 E-value=0.042 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+|++|+|||+|++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999763
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.61 E-value=0.028 Score=46.72 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=16.6
Q ss_pred ceeeeCCCCChHHHHHHH
Q psy1366 241 HLLLVGDPGTGKSEILKF 258 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~ 258 (345)
-+.|+|++|+|||+|++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999993
No 230
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.041 Score=45.14 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.4
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+++|++|+|||+|+..+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34579999999999999999998754
No 231
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.60 E-value=0.039 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3479999999999999999998764
No 232
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.59 E-value=0.041 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.++++|++|+|||+|++.+..+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 38999999999999999999998864
No 233
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.59 E-value=0.036 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=19.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+|+||+|||+|++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.55 E-value=0.051 Score=46.97 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+|++|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999987
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.53 E-value=0.032 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|.|.|.||+|||++++.+++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999864
No 236
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.51 E-value=0.045 Score=46.17 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|.|+|++|+|||++++.+++. +..++
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 47999999999999999999987 44443
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.51 E-value=0.042 Score=50.89 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=19.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+||+||||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5799999999999999999865
No 238
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.50 E-value=0.044 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|+..+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 378999999999999999999754
No 239
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.47 E-value=0.043 Score=45.07 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+..-
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3479999999999999999998753
No 240
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.44 E-value=0.043 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+++|++|+|||+|++++...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999988763
No 241
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.44 E-value=0.035 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+..-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999998763
No 242
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.42 E-value=0.044 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+..+..-
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999998753
No 243
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.40 E-value=0.042 Score=44.99 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...|+++|++|+|||+|+..+..-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 244
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.056 Score=44.91 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+++|++|+|||+|+..+...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 44579999999999999999998754
No 245
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.39 E-value=0.035 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|.|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 246
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.38 E-value=0.045 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+..+..-
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4479999999999999999998753
No 247
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.37 E-value=0.043 Score=44.89 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=20.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|++.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 447999999999999999998753
No 248
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.043 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|+++|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998654
No 249
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.37 E-value=0.047 Score=45.69 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+..++|+++|++|+|||+|++.+..-
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 44579999999999999999998764
No 250
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.33 E-value=0.042 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.++|+++|++|+|||+|+..+..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 37999999999999999999874
No 251
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.32 E-value=0.069 Score=49.44 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.++|+|++|+|||+|++.+++.++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~ii 34 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELI 34 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 6899999999999999999999875443
No 252
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.31 E-value=0.046 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.++|+++|++|+|||+|++.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999998875
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.31 E-value=0.029 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.|+|++|+|||+|++.++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999865
No 254
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.28 E-value=0.044 Score=46.40 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.0
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+..+.|+++|++|+|||+|+.++..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4457999999999999999998874
No 255
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.28 E-value=0.042 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998764
No 256
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.27 E-value=0.046 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.|+|.+|+|||++++.++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999875
No 257
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.25 E-value=0.04 Score=46.33 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.+.|+|++|+|||+|++.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999987653
No 258
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.24 E-value=0.049 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.5
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...+.|+++|++|+|||+|++.+..-
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34479999999999999999887653
No 259
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.22 E-value=0.07 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+++++|++|+|||++++++..+.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 37999999999999999999998875
No 260
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.042 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+.++..-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3479999999999999999998763
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.21 E-value=0.038 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|.|.|.||+|||++++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999764
No 262
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.17 E-value=0.046 Score=51.78 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-.++|+|+||+|||+|++.++......+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 3799999999999999999998754433
No 263
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.17 E-value=0.051 Score=45.80 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3479999999999999999998754
No 264
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.16 E-value=0.044 Score=45.40 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.++|+++|++|+|||+|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999998864
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.16 E-value=0.059 Score=50.41 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=27.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC--C--------CeEEEcCCc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS--P--------RSVLTTGVG 273 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~--~--------~~~~~~~~~ 273 (345)
--+.|+|+||+|||+|++.++... + +.+|+.+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 478999999999999999999887 2 237777644
No 266
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.15 E-value=0.051 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++.+..-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 479999999999999999998753
No 267
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.14 E-value=0.053 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|+..+..-
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 479999999999999999999754
No 268
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.05 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|++.+..-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 379999999999999999998764
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.09 E-value=0.047 Score=48.32 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+||+|+|||+|++.++.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36889999999999999999998764
No 270
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.07 E-value=0.05 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|+..+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 347999999999999999999874
No 271
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.04 E-value=0.057 Score=47.78 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|.|.|+||+|||++++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999997664
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.04 E-value=0.054 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.730 Sum_probs=21.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+.|+|++|+|||+|++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999875
No 273
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.02 E-value=0.055 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|+..+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 347999999999999999999875
No 274
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.97 E-value=0.046 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.8
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
||.++|++.|+||+|||+++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 67789999999999999996666543
No 275
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.96 E-value=0.053 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.3
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+..-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988754
No 276
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.96 E-value=0.053 Score=46.53 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=21.6
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...+.|+++|++|+|||+|++.+..-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 44589999999999999999988753
No 277
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.95 E-value=0.049 Score=44.95 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.7
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+..-
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3479999999999999999988753
No 278
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.93 E-value=0.042 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999999999988764
No 279
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.92 E-value=0.037 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999988764
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.92 E-value=0.072 Score=45.76 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|.|.|++|+|||++++.+++ ++..++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 4799999999999999999998 554443
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.91 E-value=0.032 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.4
Q ss_pred ceeeeCCCCChHHHHHHHHH-hhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAK-RMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~-~~~~~ 265 (345)
-+.|+||+|+|||++++.++ .+.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 68899999999999999999 87753
No 282
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.91 E-value=0.06 Score=45.91 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
..|.|+|.+|+|||++++.+++.++..++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 35889999999999999999998554443
No 283
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.91 E-value=0.069 Score=45.82 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=26.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
..|.|.|++|+|||++++.+++.++..++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 47999999999999999999998776665543
No 284
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.91 E-value=0.06 Score=44.86 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++++..-
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4479999999999999999998753
No 285
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.90 E-value=0.055 Score=45.05 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.5
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999998754
No 286
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.88 E-value=0.042 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|+++|++|+|||+|+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999988753
No 287
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.052 Score=45.46 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999998754
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.83 E-value=0.37 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
--++++|++|+|||+++..++..+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 368999999999999999988765
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.80 E-value=0.046 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..|+|.|+||+|||++++.+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999998765
No 290
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.80 E-value=0.061 Score=44.90 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.4
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+++|++|+|||+|+..+..-
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34579999999999999999998764
No 291
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.79 E-value=0.054 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.3
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999988753
No 292
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.047 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+++|++|+|||+|++.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 7999999999999999999874
No 293
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.78 E-value=0.059 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+++|++|+|||+|+.++..-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3479999999999999999998754
No 294
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.76 E-value=0.057 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.0
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
...++|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4457999999999999999998874
No 295
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.71 E-value=0.062 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.2
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.|+|+|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998875
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.70 E-value=0.051 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|+||+|||+|++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 297
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.67 E-value=0.049 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999988754
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.66 E-value=0.19 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
--++|+|++|+|||++++.++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998753
No 299
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.66 E-value=0.1 Score=48.53 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=24.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.|+|+||+|+|||+|+..+++.++..+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiI 69 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVI 69 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEE
Confidence 6899999999999999999999875443
No 300
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.62 E-value=0.055 Score=45.18 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.2
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
...+.|+++|++|+|||+|++.+..--
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 445799999999999999999988654
No 301
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.61 E-value=0.035 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.3
Q ss_pred eceeeeCCCCChHHHHHHHHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~ 260 (345)
+.|+++|++|+|||+|+..+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 799999999999999998765
No 302
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.60 E-value=0.076 Score=53.81 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHH-HHHHHh
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEI-LKFAKR 261 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l-~~~i~~ 261 (345)
+.-+.|+..+|... --.|+.||||||||+. +..+..
T Consensus 192 ~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHH
Confidence 45577888887643 1578999999999874 333433
No 303
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.59 E-value=0.061 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.9
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...|+++|++|+|||+|+..+..-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999988754
No 304
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.58 E-value=0.056 Score=45.70 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999998753
No 305
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.57 E-value=0.049 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...|+++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 306
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.57 E-value=0.059 Score=47.12 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..|.|+|++|+|||++++.+++.++..++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3699999999999999999998666555443
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.55 E-value=0.064 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.+|+|+.|+|||+|++++.-++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999988764
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.54 E-value=0.061 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.+.|+||+|+|||+|++.++.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 78999999999999999999887
No 309
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.50 E-value=0.051 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999988764
No 310
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.50 E-value=0.052 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999988764
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.49 E-value=0.063 Score=50.35 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+++|+|+||+|||++++.+++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3799999999999999999998664
No 312
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.49 E-value=0.019 Score=55.54 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=48.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeEEEcCCccCcCCceEEEE-----e-ec------CeeEeeeceeeecCCcEEEEc
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSAL-----R-EN------GEWHLEAGALVLSDGGVCCID 308 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~~~~~~glt~~~~-----~-~~------~~~~~~~G~l~la~~gi~~ID 308 (345)
-.++.|+||+|||+++...+... +..+.+-.......+...+. . .. ..|.+.++.....+..+++||
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~~-~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiD 241 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNFE-EDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFID 241 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCTT-TCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhccC-CeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEe
Confidence 56899999999999998776532 22232222111111000000 0 00 001111111111125699999
Q ss_pred CCCCCCHHhHHHHHHHHhCCEEEE
Q psy1366 309 EFSSIKEHDRTSIHEAMEQQTISV 332 (345)
Q Consensus 309 Eidk~~~~~~~~l~eame~~~i~i 332 (345)
|...++.....+++.+.....+-+
T Consensus 242 E~sm~~~~~l~~l~~~~~~~~vil 265 (446)
T 3vkw_A 242 EGLMLHTGCVNFLVEMSLCDIAYV 265 (446)
T ss_dssp TGGGSCHHHHHHHHHHTTCSEEEE
T ss_pred CcccCCHHHHHHHHHhCCCCEEEE
Confidence 999999988878877765544443
No 313
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.49 E-value=0.063 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=21.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..++|+++|++|+|||+|++.+..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999998864
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.45 E-value=0.054 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|+++|++|+|||+|++.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988654
No 315
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.42 E-value=0.053 Score=48.13 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999998764
No 316
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.42 E-value=0.053 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred eeceeeeCCCCChHHHHHHHHH
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
.+.|+++|++|+|||+|+..+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999885
No 317
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.42 E-value=0.053 Score=45.63 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=21.7
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhC
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.|+++|++|+|||+|++++....
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34799999999999999999887643
No 318
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.40 E-value=0.071 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+..-
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999988753
No 319
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.38 E-value=0.056 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred eeeceeeeCCCCChHHHHHHHHH
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
..+.|+++|++|+|||+|++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44799999999999999999874
No 320
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.33 E-value=0.068 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.++++||+|+|||++++.++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 799999999999999999998763
No 321
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.32 E-value=0.089 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=23.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.++++|++|+|||+|++.++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 8999999999999999999998864
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.32 E-value=0.23 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.|+|+.|.|||+|++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999765
No 323
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.31 E-value=0.058 Score=47.72 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
.+.|+|++|+|||+|++.++.+.+. .++..|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 6899999999999999999988753 344444
No 324
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.30 E-value=0.081 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.7
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+++|++|+|||+|++.+..-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999988753
No 325
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.30 E-value=0.052 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.6
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999998754
No 326
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.30 E-value=0.058 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|+.|+|||+|++.++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6889999999999999999988764
No 327
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.29 E-value=0.058 Score=48.01 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6889999999999999999988763
No 328
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.28 E-value=0.069 Score=46.00 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-++|+|++|+|||+|+..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3699999999999999999998776
No 329
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.28 E-value=0.042 Score=45.31 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=11.0
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+.|+++|++|+|||+|+..+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999988764
No 330
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.27 E-value=0.058 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999988754
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.25 E-value=0.059 Score=48.40 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-+.|+|++|+|||+|++.++.+.+. .++..|
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 6889999999999999999998764 344444
No 332
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.24 E-value=0.059 Score=48.75 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-+.|+||+|+|||+|++.++.+.+. .++..|
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 6889999999999999999988764 344444
No 333
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.22 E-value=0.069 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999999864
No 334
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.20 E-value=0.047 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999988753
No 335
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.20 E-value=0.036 Score=47.50 Aligned_cols=92 Identities=21% Similarity=0.123 Sum_probs=47.9
Q ss_pred ceeeeCCCCChHH-HHHHHHHhhC--CC-eEEEcCC----c----cCcCCceEEEEee--cCeeEeeeceeeecCCcEEE
Q psy1366 241 HLLLVGDPGTGKS-EILKFAKRMS--PR-SVLTTGV----G----TTTAGLTVSALRE--NGEWHLEAGALVLSDGGVCC 306 (345)
Q Consensus 241 ~iLl~G~pGtGKs-~l~~~i~~~~--~~-~~~~~~~----~----~~~~glt~~~~~~--~~~~~~~~G~l~la~~gi~~ 306 (345)
=.+++|+.|+||| .|++++.+.. .+ .++.... . .+..|+...+..- ..++... ..+--+++
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~-----~~~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQE-----ALGVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHH-----HHTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHh-----ccCCCEEE
Confidence 4678999999999 8888887643 22 2232211 0 1111221111111 1111000 11235999
Q ss_pred EcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEE
Q psy1366 307 IDEFSSIKEHDRTSIHEAMEQQTISVAKDKESK 339 (345)
Q Consensus 307 IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~ 339 (345)
|||+.-+ ++ +..+++.|-+.-+.|--+|+..
T Consensus 97 IDEaQFf-k~-~ve~~~~L~~~gk~VI~~GL~~ 127 (195)
T 1w4r_A 97 IDEGQFF-PD-IVEFCEAMANAGKTVIVAALDG 127 (195)
T ss_dssp ESSGGGC-TT-HHHHHHHHHHTTCEEEEEEESB
T ss_pred EEchhhh-HH-HHHHHHHHHHCCCeEEEEeccc
Confidence 9999999 54 5566666644444554445443
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.18 E-value=0.064 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...|+++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998754
No 337
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.13 E-value=0.093 Score=44.26 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+..+..-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999998764
No 338
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.11 E-value=0.066 Score=46.53 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHh-hC---CCeEEEcCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR-MS---PRSVLTTGV 272 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~-~~---~~~~~~~~~ 272 (345)
-++++|+||+|||+|+..++. .+ .+.+|.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 689999999999999766543 22 244565543
No 339
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.072 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+..-
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 479999999999999999988753
No 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.10 E-value=0.063 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999988754
No 341
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.10 E-value=0.64 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.+.++|+||+|||+|+.++...
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 342
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.06 E-value=0.075 Score=44.87 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
...++|+++|++|+|||+|++.+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3447999999999999999998864
No 343
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.03 E-value=0.063 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999998764
No 344
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.085 Score=43.98 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.5
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+++|++|+|||+|++.+..-
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34579999999999999999998764
No 345
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.077 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|+..+..-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.99 E-value=0.066 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999988753
No 347
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.99 E-value=0.081 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
....+|+++|++|+|||+|+..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3446899999999999999998764
No 348
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.98 E-value=0.066 Score=48.51 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
.+.|+|++|+|||+|++.++.+.+. .++..|
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 6889999999999999999988764 344444
No 349
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.96 E-value=0.057 Score=44.99 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|++.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999887643
No 350
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.95 E-value=0.088 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-+-|.|++|+|||++++.++..++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998654
No 351
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.94 E-value=0.071 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-++|+|+||+|||+|++.++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988754
No 352
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.91 E-value=0.076 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+.|+++|++|+|||+|+..+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 37999999999999999999874
No 353
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.91 E-value=0.094 Score=49.16 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=23.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-.+.|+|++|+|||+|++.++.+.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37899999999999999999998864
No 354
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.90 E-value=0.13 Score=47.46 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=25.2
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHh-hC-----CCeEEEcCCcc
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKR-MS-----PRSVLTTGVGT 274 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~-~~-----~~~~~~~~~~~ 274 (345)
+| + +++.||||+|||+|+-.++. .. .+.+|+++..+
T Consensus 28 ~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 56 5 89999999999998655443 22 34677776543
No 355
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.90 E-value=0.064 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6889999999999999999988754
No 356
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.89 E-value=0.073 Score=46.60 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=22.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-|.|.|+||+|||++++.+++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 357
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.85 E-value=0.068 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|+|||+|++.++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6889999999999999999988754
No 358
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.84 E-value=0.22 Score=42.42 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
--+++|||++.++++....+.++.+.+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~ 108 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESG 108 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 469999999999877655555544443
No 359
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.80 E-value=0.084 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=21.3
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+++|++|+|||+|++.+..-
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 478999999999999999998753
No 360
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.79 E-value=0.15 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.|+|++|+|||+|++.+..+.+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999998654
No 361
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.77 E-value=0.15 Score=46.83 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-+++.||+|+|||+|+..+++.++..+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~i 38 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVEL 38 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcE
Confidence 478899999999999999999987544
No 362
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.72 E-value=0.082 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+..+..-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 379999999999999999888753
No 363
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.095 Score=45.04 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++|+++|++|+|||+|+..+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3479999999999999999998764
No 364
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.68 E-value=0.13 Score=51.93 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.-+.|+..++..+ ..++.||||||||+++..+..
T Consensus 183 ~~Q~~av~~~l~~~---------------~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 183 HSQVYAVKTVLQRP---------------LSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp HHHHHHHHHHHTCS---------------EEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---------------CeEEECCCCCCHHHHHHHHHH
Confidence 45566666666433 689999999999997665543
No 365
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.65 E-value=0.071 Score=47.69 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=22.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999998875
No 366
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.63 E-value=0.16 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=18.1
Q ss_pred ceeeeCCCCChHHHHHHHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~ 260 (345)
-++|+|+||+|||+|++.++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 69999999999999999654
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.62 E-value=0.037 Score=47.23 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-|.+.|++|+|||++++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 368
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.61 E-value=0.067 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+|+|++|+|||+|++.+...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999998753
No 369
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.1 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.9
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..+.|+|+|+||+|||+|+..+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998863
No 370
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.54 E-value=0.054 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.4
Q ss_pred eceeeeCCCCChHHHHHHHHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~ 260 (345)
++|+++|++|+|||+|+.++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999998874
No 371
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.54 E-value=0.1 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.6
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+|+|++|+|||+|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 6899999999999999987764
No 372
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.54 E-value=0.077 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=19.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-++|+|+||+|||+|++.++..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988853
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.52 E-value=0.089 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.-+.|.|++|+|||++++.++..+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999865
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.52 E-value=0.09 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6889999999999999999998764
No 375
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.52 E-value=0.1 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+.|+|+|+||+|||+|+.++..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999875
No 376
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.49 E-value=0.092 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.9
Q ss_pred eceeeeCCCCChHHHHHHHHH
Q psy1366 240 SHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~ 260 (345)
.-+++.|+||+|||+|+..++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 378999999999999987654
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.47 E-value=0.18 Score=46.39 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-++++|+||+|||+|+..++..+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 79999999999999999988653
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.33 E-value=0.097 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 5789999999999999999998754
No 379
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.31 E-value=0.099 Score=49.20 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5789999999999999999998764
No 380
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.29 E-value=0.19 Score=49.87 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=33.7
Q ss_pred CcccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHH
Q psy1366 205 CPAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 205 ~p~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
.+.++|.+.....+.-.+.... ++ ..-++++|++|+|||+|++.++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~-----~~-----~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK-----GE-----PGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST-----TS-----CEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc-----CC-----CceEEEEcCCCCCHHHHHHHHH
Confidence 3458888887777777776421 01 1268999999999999998875
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.29 E-value=0.088 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 6889999999999999999998754
No 382
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.27 E-value=0.54 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.+.|+|+||+|||+|++.+...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999865
No 383
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.27 E-value=0.15 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=20.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-++++|+||+|||+|+..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998875
No 384
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.27 E-value=0.1 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 6789999999999999999998764
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.26 E-value=0.088 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5789999999999999999998754
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.24 E-value=0.16 Score=46.84 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-+++.||+|+|||+|+..+++.++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~i 31 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccce
Confidence 578999999999999999999887533
No 387
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.23 E-value=0.076 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|++|+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998853
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.21 E-value=0.1 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 5789999999999999999998764
No 389
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.21 E-value=0.11 Score=47.89 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-+.|+|++|+|||+|++.++.+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 4788999999999999999998764
No 390
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.18 E-value=0.056 Score=45.43 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=7.1
Q ss_pred eeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
...++|+++|++|+|||+|+..+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34579999999999999999987654
No 391
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.18 E-value=0.12 Score=45.06 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=50.9
Q ss_pred eeeceeeeCCCCChHHH-HHHHHHhhCC--CeE--EEcCC--------ccCcCCceEEEE--eecCeeEeeeceeeecCC
Q psy1366 238 AESHLLLVGDPGTGKSE-ILKFAKRMSP--RSV--LTTGV--------GTTTAGLTVSAL--RENGEWHLEAGALVLSDG 302 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~-l~~~i~~~~~--~~~--~~~~~--------~~~~~glt~~~~--~~~~~~~~~~G~l~la~~ 302 (345)
|.++ +++|+-|+|||+ |++.+.+... ..+ +.... -++..|+...+. .+..+. -..+..+-
T Consensus 28 G~I~-vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di----~~~i~~~~ 102 (219)
T 3e2i_A 28 GWIE-CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEI----MTHDLTNV 102 (219)
T ss_dssp CEEE-EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGG----GGSCCTTC
T ss_pred ceEE-EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHH----HHHHhcCC
Confidence 4444 669999999998 7777655432 222 11111 111223322211 111000 00012244
Q ss_pred cEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEEE
Q psy1366 303 GVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKK 340 (345)
Q Consensus 303 gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~~ 340 (345)
-+++|||..-++++.-..+.++.+. -+.|--+|+...
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la~~-gi~Vi~~GLd~D 139 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLSAD-GHRVIVAGLDMD 139 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CEEEEechhcCCHHHHHHHHHHHHC-CCEEEEeecccc
Confidence 6999999999998776777766654 455545555443
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.17 E-value=0.15 Score=47.50 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCe
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRS 266 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~ 266 (345)
-|.+.|++|+|||+|++.+++.++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 58999999999999999999998743
No 393
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.12 E-value=0.14 Score=53.35 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 212 YLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 212 ~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.-+.|+..++.++ ..++.|+||||||+++..+..
T Consensus 359 ~~Q~~Av~~~l~~~---------------~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 359 HSQVYAVKTVLQRP---------------LSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp HHHHHHHHHHHTSS---------------EEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC---------------eEEEEcCCCCCHHHHHHHHHH
Confidence 45566776666433 689999999999987666544
No 394
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.11 E-value=0.1 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 6889999999999999999998764
No 395
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.05 E-value=0.12 Score=47.31 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+|+|+||+|||+|+..+..-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999987653
No 396
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.03 E-value=0.11 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+|++|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 397
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.01 E-value=0.099 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|.|+|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 398
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.96 E-value=0.21 Score=49.45 Aligned_cols=46 Identities=24% Similarity=0.097 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHHhCCCcccCCCCCceeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 207 AIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 207 ~i~G~~~vk~~i~l~l~~g~~~~~~~~~~~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..||.+..+..|.-.|..+... ....|.++|.+|+|||+||+.+++
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~---------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDL---------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTS---------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCC---------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3369987777777666533110 113689999999999999999995
No 399
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.91 E-value=0.1 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.|+|+||+|||+|++.+..+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998654
No 400
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.87 E-value=0.1 Score=48.93 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=26.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCCc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGVG 273 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~~ 273 (345)
--++|+||||+|||+|+..++..+ .+.+|+++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 378999999999999999988654 2345766543
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.85 E-value=0.11 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.|+|++|+|||+|++.++.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 402
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.85 E-value=0.13 Score=48.05 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=24.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGV 272 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~ 272 (345)
-++++|+||+|||+|+..++... .+.+|.+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 68999999999999988877432 245566543
No 403
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.81 E-value=0.11 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.++++||+|+|||++++.+....+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 699999999999999999988765
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.77 E-value=0.092 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++.|+|++|+|||+|++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5999999999999999999876
No 405
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.71 E-value=0.1 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-|+|+|+||+|||++++.+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999987654
No 406
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.67 E-value=0.11 Score=46.54 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred eeceeeeCCCCChHHHHHHHHH
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
.++|+++|+||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999998764
No 407
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.66 E-value=0.064 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+|++|+|||+|++.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.61 E-value=0.12 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=20.0
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..|+++|++|+|||+|+.++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998864
No 409
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.60 E-value=0.1 Score=47.81 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-+.|+|++|+|||+|++.++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999998754
No 410
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.56 E-value=0.092 Score=49.25 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=22.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5789999999999999999988754
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.54 E-value=0.12 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|.|.|+||+|||++++.++++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999964
No 412
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.51 E-value=0.11 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
++|.|+|++|+|||+|++.+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999998754
No 413
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.39 E-value=0.14 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|++++|++|+|||++++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998754
No 414
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.37 E-value=0.14 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||++++.++.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999997764
No 415
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.34 E-value=0.11 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=22.1
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.|
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999998874
No 416
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.29 E-value=0.14 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|.|+|+||+|||+|+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999753
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.22 E-value=0.26 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
--++++|+||+|||+|+..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988764
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.10 E-value=0.14 Score=43.87 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++++|++|+|||+|+..+...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999888765
No 419
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.08 E-value=0.11 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|+.|+|||+|++.++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6889999999999999999988763
No 420
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.80 E-value=0.17 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
--+.|+|++|+|||++++.++.+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999997753
No 421
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.79 E-value=0.092 Score=48.55 Aligned_cols=82 Identities=6% Similarity=0.020 Sum_probs=51.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC-C---e--EEEcCCccCcCCceEEEEeecCeeEeeecee-eecCCcEEEEcCCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP-R---S--VLTTGVGTTTAGLTVSALRENGEWHLEAGAL-VLSDGGVCCIDEFSS 312 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~-~---~--~~~~~~~~~~~glt~~~~~~~~~~~~~~G~l-~la~~gi~~IDEidk 312 (345)
...||+||+|+||++.++.+++.+. . . ++... + ...+ + +..-..... ..++.-|++|||.+.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~-----~---~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-P--NTDW-----N---AIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-T--TCCH-----H---HHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-C--CCCH-----H---HHHHHhcCcCCccCCeEEEEECCCC
Confidence 3789999999999999988877431 1 1 11110 0 0000 0 000000001 135577999999999
Q ss_pred -CCHHhHHHHHHHHhC---CEEEE
Q psy1366 313 -IKEHDRTSIHEAMEQ---QTISV 332 (345)
Q Consensus 313 -~~~~~~~~l~eame~---~~i~i 332 (345)
++.+.+++|+..||+ .++-|
T Consensus 88 kl~~~~~~aLl~~le~p~~~~~~i 111 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLLHDDLLLI 111 (343)
T ss_dssp CCCTTHHHHHHHHHTTCBTTEEEE
T ss_pred CCChHHHHHHHHHHhcCCCCeEEE
Confidence 999999999999997 66655
No 422
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.28 E-value=0.062 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.++|+++|++|+|||+|+..+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 37999999999999999977753
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.73 E-value=0.17 Score=41.07 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-.+++||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999997543
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.68 E-value=0.12 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.++|++|+|||+|++.+..+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998864
No 425
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.66 E-value=0.76 Score=44.29 Aligned_cols=89 Identities=27% Similarity=0.322 Sum_probs=47.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhhCCCeEEEcCC-ccCcCCceEEEEeecCeeEe--eec-------------------
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGV-GTTTAGLTVSALRENGEWHL--EAG------------------- 295 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~~-~~~~~glt~~~~~~~~~~~~--~~G------------------- 295 (345)
....+.++|+||+|||+|+..+...- + ..+... +++..-.......++..+.+ .||
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~-~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEE-R-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST-T-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCC-c-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 34689999999999999999987431 1 122211 11111111112111112221 255
Q ss_pred --eeeecCCcEEEEcCCCCCCHHhHHHHHHHHhCC
Q psy1366 296 --ALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQ 328 (345)
Q Consensus 296 --~l~la~~gi~~IDEidk~~~~~~~~l~eame~~ 328 (345)
.+..|+.-++++|--+...+.+...+..+.+.+
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~ 306 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG 306 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcC
Confidence 123356778888877777777665555555543
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.61 E-value=0.14 Score=45.09 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=24.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
..+-|+|+||+|||++++.+++.+.-..+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3467899999999999999998776544433
No 427
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.55 E-value=0.16 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
++|.|+|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999998754
No 428
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.55 E-value=0.17 Score=47.55 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=25.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC---eEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR---SVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~---~~~~~~ 271 (345)
-+.|+||+|+|||+|++.++.+.+. .++..|
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 6889999999999999999998764 344444
No 429
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.52 E-value=0.13 Score=47.25 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=22.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
.+.|+|++|.|||+|++.++.+.+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 7899999999999999999998764
No 430
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.50 E-value=0.15 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-|.+.|++|+|||+|++.++..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999988775
No 431
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.48 E-value=0.9 Score=41.29 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.5
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|.|+|+||+|||+|+.++..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999999875
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.42 E-value=0.12 Score=49.02 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 689999999999999999998765
No 433
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.33 E-value=0.16 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 6789999999999999999877643
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.31 E-value=0.19 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|+|+|.||+|||++++.+++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998764
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.30 E-value=0.18 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.-+||.|++|+|||+++..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999988774
No 436
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.27 E-value=0.18 Score=43.02 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++++|.+|+|||+|+..+...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999988765
No 437
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.22 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.4
Q ss_pred ceeeeCCCCChHHHHHHHHH
Q psy1366 241 HLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~ 260 (345)
..|+.|+||||||+++..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68999999999998765543
No 438
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.25 E-value=0.25 Score=46.28 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=23.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----CCeEEEcC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----PRSVLTTG 271 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~ 271 (345)
-+++.|+||+|||+|+..++..+ .+.+|++.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999998877542 24556665
No 439
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.08 E-value=0.24 Score=41.75 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.8
Q ss_pred eeeeCCCCChHHHHHHHHHhhCCCeEEEc
Q psy1366 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTT 270 (345)
Q Consensus 242 iLl~G~pGtGKs~l~~~i~~~~~~~~~~~ 270 (345)
+|++|.+|+|||+++..++....+.+|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEe
Confidence 79999999999999999986622345554
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.07 E-value=0.18 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+.|+++|++|+|||+|+.++..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 37999999999999999999875
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.06 E-value=0.23 Score=41.61 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.+.|++|+|||+|++.+...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 57899999999999999988764
No 442
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=89.06 E-value=0.14 Score=38.92 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=23.6
Q ss_pred EEEEEEEeCCCCcEEEEeecccccccccCCcCCCCCCCCCCCC
Q psy1366 38 EFRREYVCTKCKQCFYVKADFEQFYSIANPLSCGSPSSCDGTN 80 (345)
Q Consensus 38 ~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~C~~~~~C~~~~ 80 (345)
+...-|+|.+||+.|. ..+..|.+|| .|++.+
T Consensus 63 L~v~p~~C~~CG~~F~--------~~~~kPsrCP---~CkSe~ 94 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFK--------AEINIPSRCP---KCKSEW 94 (105)
T ss_dssp EEECCCBBTTTCCBCC--------CCSSCCSSCS---SSCCCC
T ss_pred EEEECcChhhCcCeec--------ccCCCCCCCc---CCCCCc
Confidence 3344699999999861 1356899998 699964
No 443
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.03 E-value=0.12 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.|+++|++|+|||+|+..+...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 68999999999999999988653
No 444
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.94 E-value=0.12 Score=44.18 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=20.9
Q ss_pred eeeceeeeCCCCChHHHHHHH-HHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKF-AKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~-i~~~ 262 (345)
..++|+++|++|+|||+|++. +...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 347999999999999999998 4443
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.93 E-value=0.29 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+|++|+|||+|++.+....+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 688999999999999999997654
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.89 E-value=0.23 Score=55.55 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=24.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC----CeEEEcCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP----RSVLTTGV 272 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~----~~~~~~~~ 272 (345)
.+|++||||||||+|+++++.... ..+|++..
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~ 1119 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1119 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcc
Confidence 599999999999999999886442 34555543
No 447
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.87 E-value=0.51 Score=43.42 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
--++++|++|+|||+++..++..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999998888665
No 448
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.86 E-value=0.19 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
++|+++|++|+|||+|++.+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 6899999999999999999754
No 449
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.85 E-value=0.22 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+|++|+|||+|++.+. ..+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 67899999999999999999 654
No 450
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.85 E-value=0.2 Score=41.86 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.+.|++|+|||+++..+...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999988764
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.80 E-value=0.27 Score=45.84 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=23.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 7899999999999999999999764
No 452
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.75 E-value=0.19 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-++|+|++|+|||+|+|.++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 799999999999999999998874
No 453
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=88.72 E-value=0.19 Score=42.74 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.8
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..+.|+++|++|+|||+|+..+..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999987763
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.71 E-value=0.18 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999998754
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.65 E-value=0.23 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
--++|+|++|+|||++++.++.+++
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4789999999999999999998753
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.64 E-value=0.28 Score=55.67 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=25.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGV 272 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~ 272 (345)
-+++|+||||||||+|+.+++..+ .+..|.+-.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 589999999999999998886654 234555543
No 457
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.61 E-value=0.26 Score=42.81 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEEEcC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTG 271 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~~~~ 271 (345)
.-+.|.|+.|+|||++++.++.. ...+...+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~ 51 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICLLT 51 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence 36899999999999999999988 33344444
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.60 E-value=0.18 Score=49.64 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.8
Q ss_pred ceeeeCCCCChHHHHHHH--HHhhCC---CeEEEcCCc
Q psy1366 241 HLLLVGDPGTGKSEILKF--AKRMSP---RSVLTTGVG 273 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~--i~~~~~---~~~~~~~~~ 273 (345)
.++|+|++|+|||+|++. ++.+.+ ..+++.+..
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 799999999999999998 455443 467777653
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.52 E-value=0.31 Score=42.46 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.3
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|.+.|.+|+|||++++.+++.++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998854
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.46 E-value=0.3 Score=46.54 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCCeE
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPRSV 267 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~~~ 267 (345)
-|.+.||+|+|||+|+..+++.++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 578999999999999999999887544
No 461
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.45 E-value=0.31 Score=41.62 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=26.1
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCCeEE
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVL 268 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~~~~ 268 (345)
.-|.|.|++|+|||++++.+++.++..++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 36899999999999999999999887766
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.42 E-value=0.11 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-+.|+||+|+|||+|+++++.+.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 356889999999999999998765
No 463
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.23 E-value=0.25 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
--++|+|++|+|||++++.++.++
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 468899999999999999999875
No 464
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.18 E-value=0.25 Score=47.69 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 7899999999999999999999865
No 465
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.17 E-value=0.27 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..+.|+|+||+|||+|+..+...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 466
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.08 E-value=0.21 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998765
No 467
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.03 E-value=0.23 Score=46.69 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=20.6
Q ss_pred eeeec-eeeeCCCCChHHHHHHHHHhh
Q psy1366 237 RAESH-LLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 237 r~~~~-iLl~G~pGtGKs~l~~~i~~~ 262 (345)
|..+. +.|+|+||+|||+|++.+...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 44455 889999999999999999864
No 468
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.00 E-value=1.6 Score=39.58 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
--|.++|+||+|||+|+.++..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999998875
No 469
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.99 E-value=1.5 Score=41.90 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=19.0
Q ss_pred ecCCcEEEEcCCCCCCH---HhHHHHHHHH
Q psy1366 299 LSDGGVCCIDEFSSIKE---HDRTSIHEAM 325 (345)
Q Consensus 299 la~~gi~~IDEidk~~~---~~~~~l~eam 325 (345)
+.+-++++|||.+.+.. ..+..+.+..
T Consensus 91 ~~~l~~vViDEaH~~~~~~~~~~~~l~~~~ 120 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFLDPASVAARGYIETRV 120 (431)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCccCCccHHHHHHHHHHHh
Confidence 45569999999999973 3445555554
No 470
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.87 E-value=0.25 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.7
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
=+++.|+||+|||+|+..++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999888764
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.78 E-value=0.23 Score=44.02 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.4
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|.|.|.+|+|||++++.+++.+..
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999998754
No 472
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.77 E-value=0.71 Score=40.51 Aligned_cols=36 Identities=22% Similarity=0.081 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCCCHHhHHHHHHHHhCCEEEEeeCCeEE
Q psy1366 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESK 339 (345)
Q Consensus 302 ~gi~~IDEidk~~~~~~~~l~eame~~~i~i~k~gi~~ 339 (345)
-.+++|||+.-+.+ ...+.+.|.+..+.+--+|...
T Consensus 91 ~dvViIDEaQF~~~--v~el~~~l~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 91 VAVIGIDEGQFFPD--IVEFCEAMANAGKTVIVAALDG 126 (234)
T ss_dssp CSEEEESSGGGCTT--HHHHHHHHHHTTCEEEEECCSB
T ss_pred CCEEEEEchhhhhh--HHHHHHHHHhCCCEEEEEeccc
Confidence 46999999999975 5677777776656665555543
No 473
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.71 E-value=0.26 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred eeceeeeCCCCChHHHHHHHHHhh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.++|+++|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 379999999999999999998753
No 474
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.69 E-value=0.26 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
.+.|+|+||+|||+|++++...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999754
No 475
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.58 E-value=0.23 Score=49.42 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
..+.|+|++|+|||+|++.++..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4799999999999999999998874
No 476
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=87.32 E-value=0.53 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.8
Q ss_pred eeeeeceeeeCCCCChHHHHHHHHHh
Q psy1366 236 VRAESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 236 ~r~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|..++|.|+|+||+|||+|+.++..
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC-
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45557899999999999999988764
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=87.18 E-value=0.51 Score=45.78 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.7
Q ss_pred ceeeeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 235 KVRAESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 235 ~~r~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|..++|.++|+||+|||+|+.++...
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455678999999999999999998764
No 478
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.16 E-value=0.23 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
.++++|++|+|||+++..++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988655
No 479
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.03 E-value=0.55 Score=46.16 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=23.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
..|.|+|.+|+|||++++.+++.+..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999998763
No 480
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=86.69 E-value=0.26 Score=44.17 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..|.++|+||+|||+|+.++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 58999999999999999999753
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.58 E-value=0.41 Score=45.02 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=23.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC----CCeEEEcCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS----PRSVLTTGV 272 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~----~~~~~~~~~ 272 (345)
-+++.|+||+|||+|+..++..+ .+.+|++..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57789999999999998776542 245565543
No 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.52 E-value=0.33 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.+.|+|++|+|||+|++.++.+.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.50 E-value=0.3 Score=41.66 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-.+|+|+.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 46889999999999999997554
No 484
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.30 E-value=0.4 Score=48.38 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.2
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..|+|+|.||+|||++++.+++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999886
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.27 E-value=0.38 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
-.++|+|+||+|||+|++.++...+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999987653
No 486
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.24 E-value=0.34 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.3
Q ss_pred ceeeeCCCCChHHHHHHHHHhhCCC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMSPR 265 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~~~ 265 (345)
-+.|+|++|+|||+|++.++.+.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 6789999999999999999987653
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.20 E-value=0.33 Score=41.93 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.8
Q ss_pred eceeeeCCCCChHHHHHHHHHhhCC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMSP 264 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~~ 264 (345)
.-|.|.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999987653
No 488
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=86.20 E-value=0.26 Score=45.48 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeeceeeeCCCCChHHHHHHHHHh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
..+.|+++|++|+|||+|+..+..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS
T ss_pred CcceEEEECCCCccHHHHHHHHhC
Confidence 346899999999999999988753
No 489
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.04 E-value=0.33 Score=43.34 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.5
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
..++++|.||+|||+|+..+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 48999999999999999998753
No 490
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.03 E-value=1.4 Score=42.14 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.6
Q ss_pred eceeeeCCCCChHHHH
Q psy1366 240 SHLLLVGDPGTGKSEI 255 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l 255 (345)
-++|+.||+|+|||..
T Consensus 9 ~~vlv~a~TGSGKT~~ 24 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRR 24 (440)
T ss_dssp CEEEECCCTTSSTTTT
T ss_pred CCEEEEcCCCCCHHHH
Confidence 4899999999999985
No 491
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=86.01 E-value=0.38 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.4
Q ss_pred eeeceeeeCCCCChHHHHHHHHHhh
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
....+.|+|+||+|||+|++++...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3368999999999999999999864
No 492
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.00 E-value=0.36 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.1
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
...+.|+|+||+|||+|++.+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35899999999999999999987
No 493
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=85.93 E-value=0.33 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred eceeeeCCCCChHHHHHHHHHh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
+.|+++|++|+|||+|+..+..
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHHh
Confidence 6899999999999999988764
No 494
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=85.91 E-value=0.083 Score=44.46 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.0
Q ss_pred eeeceeeeCCCCChHHHHHHHHH
Q psy1366 238 AESHLLLVGDPGTGKSEILKFAK 260 (345)
Q Consensus 238 ~~~~iLl~G~pGtGKs~l~~~i~ 260 (345)
..++|+++|++|+|||+|++.+.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999987765
No 495
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.82 E-value=0.38 Score=46.44 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.4
Q ss_pred ceeeeCCCCChHHHHHHHHHhh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
-+++.|+||+|||+|+..++..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999887753
No 496
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.74 E-value=0.33 Score=45.02 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.9
Q ss_pred eceeeeCCCCChHHHHHHHHHhhC
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
..+.++|+||+|||+++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999999997653
No 497
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=85.72 E-value=0.18 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.7
Q ss_pred ceeeeCCCCChHHHHHHHHHhhC
Q psy1366 241 HLLLVGDPGTGKSEILKFAKRMS 263 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~~~ 263 (345)
-+.|+|+||+|||+|++.+....
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999997654
No 498
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=85.69 E-value=0.37 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeceeeeCCCCChHHHHHHHHHh
Q psy1366 239 ESHLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 239 ~~~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.+.++++|.||+|||+|+.++..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CceEEEEecCCCchHHHHHHHhc
Confidence 47899999999999999999874
No 499
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=85.66 E-value=0.42 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred eceeeeCCCCChHHHHHHHHHhh
Q psy1366 240 SHLLLVGDPGTGKSEILKFAKRM 262 (345)
Q Consensus 240 ~~iLl~G~pGtGKs~l~~~i~~~ 262 (345)
+.+.|+|+||+|||+|++.+...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 500
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=85.40 E-value=0.39 Score=44.70 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred ceeeeCCCCChHHHHHHHHHh
Q psy1366 241 HLLLVGDPGTGKSEILKFAKR 261 (345)
Q Consensus 241 ~iLl~G~pGtGKs~l~~~i~~ 261 (345)
.|.++|++|+|||+|+.++..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999987
Done!