RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1366
(345 letters)
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 93.6 bits (232), Expect = 5e-23
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 5 PQLHRTQFPNNEDIGSLLQISGTVVRITVAKMLEFRREYVCTKCKQCFYVKADFEQFYSI 64
+ + ++ IG + + G V + + + + C C + V + I
Sbjct: 89 SNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAV---TQSTNMI 145
Query: 65 ANPLSCGSPSSCDGTNFSPVTSVDQDNYKDYQEIKIQERAAGV--GSVPKSIWVTLEDDL 122
P C S C G +F + D+ + D Q +K+QE + G P+ I V LEDDL
Sbjct: 146 TEPSLC---SECGGRSFRLLQ--DESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDL 200
Query: 123 VDLARPGDDVIVCGAVLRRWRPVVKGVRSDIELCLSANYLTV 164
VD PGD V V G + R V + + NY
Sbjct: 201 VDTLTPGDIVRVTGTL----RTVRDERTKRFKNFIYGNYTEF 238
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 38.0 bits (87), Expect = 0.001
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 49/162 (30%)
Query: 206 PAIYGLYLVKLCLAVVLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKS------------ 253
AI G +KL L + G G +L+ GD GTGKS
Sbjct: 7 SAIVGQEDMKLALLLTAVDP-GIG-----------GVLVFGDRGTGKSTAVRALAALLPE 54
Query: 254 ----EILKFAK-------------------RMSPRSVLTTGV--GTTTAGLTVSALRENG 288
E + + +P L GV L + G
Sbjct: 55 IEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKG 114
Query: 289 EWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330
E E G L ++ G IDE + +++H + + +
Sbjct: 115 EKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGEN 156
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 34.1 bits (78), Expect = 0.018
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRE---------N 287
AE +L+ G+ G GK + + ++S RS + E
Sbjct: 21 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT 80
Query: 288 GEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKVK 344
G + G L+DGG +DE + + + +E ++ +V V+
Sbjct: 81 GAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVR 137
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 31.9 bits (71), Expect = 0.066
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 239 ESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT 276
E LLL+G +GKS I+ K+M TG+ T
Sbjct: 2 EVKLLLLGAGESGKSTIV---KQMKIIHEAGTGIVETH 36
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 32.3 bits (73), Expect = 0.074
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 237 RAESHLLLVGDPGTGKSEILK-FAKRMSPRSVLTTGVGTTTAGLTVSAL----RENGEWH 291
R +++ LLVG+ G GK+ I + A R+ V T L + +L + G++
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 292 LEA----GALVLSDGGVCCIDEFSSI 313
L + IDE +I
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTI 122
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.4 bits (70), Expect = 0.098
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 239 ESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT 276
E LLL+G +GKS +K + + V TTG+
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYP 39
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 31.5 bits (70), Expect = 0.11
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 240 SHLLLVGDPGTGKSEILK-FAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALV 298
HLLL G PG GK+ + A + +T+G G + L + E
Sbjct: 36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE--------- 86
Query: 299 LSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330
+G + IDE + ++ AME +
Sbjct: 87 --EGDILFIDEIHRLSRQAEEHLYPAMEDFVM 116
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 30.8 bits (68), Expect = 0.16
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 241 HLLLVGDPGTGKSEIL-KFAKRMSPRSVLTTGVGTTT 276
H+ L G PG GK+ ++ K ++ + V G T
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 30.4 bits (68), Expect = 0.33
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 243 LLVGDPGTGKSEILK-FAKRMS----PRSVLTTGVGTTTAGLTVSALRENGEW-----HL 292
+L+G+PG GK+ I++ A+R+ P + + + G ++ + GE+ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 106
Query: 293 EAGALVLSDGGVCCIDEFSSI 313
+ + IDE ++
Sbjct: 107 IQEVVQSQGEVILFIDELHTV 127
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.37
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 239 ESHLLLVGDPGTGKSEIL-KFAKRMSPRSVLTTGVGTTT 276
E +L++G GK+ IL K S ++ T G T
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET 50
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.2 bits (64), Expect = 0.46
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 239 ESHLLLVGDPGTGKSEIL-KFAKRMSPRSVLTTGVGTTT 276
E +LL+G GK+ +L + A T G +
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS 54
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 29.5 bits (65), Expect = 0.57
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLE 293
+ +VG GKS +L+ R L G G T V L + + E
Sbjct: 28 QIAVVGGQSAGKSSVLEN---FVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAE 77
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.59
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGT 274
+LL+G PG GKS + + + T
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHT 36
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.8 bits (63), Expect = 0.61
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 238 AESHLLLVGDPGTGKSEILK 257
AE L + G G GKS ++
Sbjct: 1 AEVKLAIFGRAGVGKSALVV 20
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.1 bits (64), Expect = 0.63
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 242 LLLVGDPGTGKSEIL---KFAKRMSPRSVLTTGVGTTT 276
+LL+G +GKS L + P T G+
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQDP----TKGIHEYD 38
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.0 bits (64), Expect = 0.76
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 237 RAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTT 276
RA LLL+G +GKS I+K + VLT+G+ T
Sbjct: 4 RATHRLLLLGAGESGKSTIVK--QMRILHVVLTSGIFETK 41
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.8 bits (63), Expect = 0.77
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 239 ESHLLLVGDPGTGKSEIL-KFAKRMSPRSVLTTGVGTTT 276
E +L++G G GK+ IL + + T G T
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVET 55
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.5 bits (62), Expect = 0.78
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 239 ESHLLLVGDPGTGKSEILK 257
E LL++G GK+ ILK
Sbjct: 2 ELRLLMLGLDNAGKTTILK 20
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.1 bits (61), Expect = 1.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 239 ESHLLLVGDPGTGKSEILK 257
E +L++G G GK+ IL
Sbjct: 5 EMRILILGLDGAGKTTILY 23
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.6 bits (63), Expect = 1.1
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSD 301
+++VG +GKS +L + + R L G G T + L + G+
Sbjct: 27 IVVVGSQSSGKSSVL---ENIVGRDFLPRGSGIVTRRPLILQLTHLPIA--DDGSQTQEW 81
Query: 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKKVKV 343
G + +D + I E + + T + + +
Sbjct: 82 G---EFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQP 120
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.0 bits (61), Expect = 1.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 239 ESHLLLVGDPGTGKSEIL-KFAKRMSPRSVLTTGVGTTT 276
E +++VG GK+ IL +F+ + T G
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE 53
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.1 bits (61), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 241 HLLLVGDPGTGKSEILK 257
+L+VG GK+ IL
Sbjct: 2 RILMVGLDAAGKTTILY 18
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 1.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 241 HLLLVGDPGTGKSEILKF 258
HLL+ G GTGKS +L+
Sbjct: 52 HLLVNGATGTGKSVLLRE 69
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.8 bits (61), Expect = 1.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 242 LLLVGDPGTGKSEIL-KFAK-RMSPRSVLTTGVGTTTAGLTV 281
+LL+GD G GKS +L +F + + +P + T G+ + +
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI 46
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 1.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 239 ESHLLLVGDPGTGKSEILK 257
E L LVG +GK+ +
Sbjct: 2 EMELTLVGLQYSGKTTFVN 20
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.0 bits (61), Expect = 1.3
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 242 LLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSD 301
+LL G P +GK+ + S + G + +A + + + S
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDA--YKSQ 100
Query: 302 GGVCCIDEFSSIKEHDRTSIHEAMEQQ 328
+D+ + ++ +
Sbjct: 101 LSCVVVDDIERLLDYVPIGPRFSNLVL 127
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 1.4
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 241 HLLLVGDPGTGKSEILK 257
+++ G+PG GK+ ++K
Sbjct: 2 KIIITGEPGVGKTTLVK 18
>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 27.6 bits (61), Expect = 1.4
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 291 HLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKE 337
+ G +V++DG + + I ++ + I KE
Sbjct: 30 FHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVFEPGKE 76
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.7 bits (60), Expect = 1.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 239 ESHLLLVGDPGTGKSEILK 257
L+ +G GK+ +L
Sbjct: 13 TGKLVFLGLDNAGKTTLLH 31
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.7 bits (60), Expect = 1.6
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
+++VG+ GKS +++
Sbjct: 5 MVVVGNGAVGKSSMIQ 20
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 1.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
L++VG G GKS +
Sbjct: 9 LVVVGGGGVGKSALTI 24
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.7 bits (60), Expect = 1.8
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
++++GD G GK+ ++
Sbjct: 5 VIILGDSGVGKTSLMN 20
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.2 bits (59), Expect = 1.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
+++VG G GKS +
Sbjct: 7 VIMVGSGGVGKSALTL 22
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
+ L+GD G GKS I+
Sbjct: 7 VCLLGDTGVGKSSIMW 22
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.8 bits (61), Expect = 1.9
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 235 KVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEA 294
+ + G G GKS +SP L T + G R H
Sbjct: 93 PHFQDKTTVFAGQSGVGKSS---LLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG 149
Query: 295 GALV 298
G +
Sbjct: 150 GLVA 153
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 242 LLLVGDPGTGKSEILK 257
L+LVGD GTGK+ +K
Sbjct: 6 LVLVGDGGTGKTTFVK 21
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 2.0
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
++++GD G GK+ ++
Sbjct: 5 VIILGDSGVGKTSLMH 20
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.2 bits (59), Expect = 2.0
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
L+ +G+ GK+ ++
Sbjct: 3 LVFLGEQSVGKTSLIT 18
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (60), Expect = 2.0
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 240 SHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVL 299
H+LL G PG GK+ + ++ T S + + A L
Sbjct: 36 DHVLLAGPPGLGKTTLAHIIASELQTNIHVT-----------SGPVLVKQGDMAAILTSL 84
Query: 300 SDGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330
G V IDE + + ++ A+E I
Sbjct: 85 ERGDVLFIDEIHRLNKAVEELLYSAIEDFQI 115
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
L++VGD G GKS +
Sbjct: 7 LVVVGDGGVGKSALTI 22
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.4 bits (59), Expect = 2.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
++L+G+ G GKS +
Sbjct: 6 VVLIGEQGVGKSTLAN 21
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 2.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 242 LLLVGDPGTGKSEILK 257
+ + G G GKS ++
Sbjct: 5 VAVFGAGGVGKSSLVL 20
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 27.8 bits (61), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 240 SHLLLVGDPGTGKSEILK-FAK 260
++L++G G GK+EI + AK
Sbjct: 50 KNILMIGPTGVGKTEIARRLAK 71
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 2.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
L++VG G GKS +
Sbjct: 8 LVVVGGGGVGKSALTI 23
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 2.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 242 LLLVGDPGTGKSEIL-KFAKRMSPRSVLTT 270
++VGD GK+ +L +A P + T
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPT 41
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 2.4
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 10/36 (27%)
Query: 221 VLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEIL 256
+ GG + S +L G GTGK+ ++
Sbjct: 18 MCGGGFFKD----------SIILATGATGTGKTLLV 43
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.1 bits (59), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 242 LLLVGDPGTGKSEIL-KFAK-RMSPRSVLTTGVGTTTAGLTV 281
LLL+G+ G GKS +L +F+ + + T GV + +
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL 50
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 2.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 242 LLLVGDPGTGKSEILK 257
LL +G GK+ +L
Sbjct: 3 LLFLGLDNAGKTTLLH 18
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.8 bits (58), Expect = 2.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
++++G G GKS +
Sbjct: 6 VVVLGSGGVGKSALTV 21
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 2.5
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 242 LLLVGDPGTGKSEIL-KFAKRMSPRSVLTTG 271
L++VGD GK+ +L +K P + T
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 35
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.9 bits (59), Expect = 2.5
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 240 SHLLLVGDPGTGKSEI 255
+L+ G+ + E+
Sbjct: 16 ISILINGEDLSYPREV 31
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 2.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
+++VGD GK+ +L
Sbjct: 5 IVVVGDSQCGKTALLH 20
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.5 bits (60), Expect = 2.6
Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 208 IYGLYLVKLCLAVVLAGGVGRGG--EDGSKVRAESHLLLVGDPGTGKSEILK---FAKRM 262
I G K +A+ L R E ++L++G G GK+EI +
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 75
Query: 263 SPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLSD-GGVCCIDEFSSI-KEHDRTS 320
V T GA+ + G+ IDE I K+ + +
Sbjct: 76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG 135
Query: 321 IHEAMEQ 327
+ E
Sbjct: 136 ADVSREG 142
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.1 bits (59), Expect = 2.7
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
+L++G+ G GKS +L
Sbjct: 10 ILIIGESGVGKSSLLL 25
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.8 bits (58), Expect = 2.7
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
+L++G+ GK+ L
Sbjct: 8 ILIIGNSSVGKTSFLF 23
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.9 bits (58), Expect = 2.7
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
++++GD GK+ +
Sbjct: 5 IIVIGDSNVGKTCLTY 20
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 26.8 bits (58), Expect = 2.8
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 241 HLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHLEAGALVLS 300
+L+L+G PG GK + ++TG A + L + +++ G LV
Sbjct: 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 301 DGGVCCIDEFSSIKEH 316
+ + + E S +
Sbjct: 62 EVTIGIVRERLSKDDC 77
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 2.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
+++GD G GKS +L
Sbjct: 7 YIIIGDMGVGKSCLLH 22
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.2 bits (59), Expect = 2.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 242 LLLVGDPGTGKSEILKFAKR 261
LL G PG+GK+ +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFE 54
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
+++GD G GKS +L
Sbjct: 6 YIIIGDTGVGKSCLLL 21
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.9 bits (58), Expect = 2.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
L++VG G GKS +
Sbjct: 6 LVVVGAGGVGKSALTI 21
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.8 bits (58), Expect = 2.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
L++G+ GTGKS +L
Sbjct: 8 FLVIGNAGTGKSCLLH 23
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.8 bits (58), Expect = 3.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 242 LLLVGDPGTGKSEIL-KFAKRMSPRSVLTT 270
LL +GD G GK+ L ++ +TT
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITT 37
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 3.0
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 233 GSKVRAESHLLLVGDPGTGKSEILK 257
G+K+ + L+L+G+ GKS ++
Sbjct: 1 GNKI-CQFKLVLLGESAVGKSSLVL 24
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.8 bits (58), Expect = 3.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
++L+GD G GKS +L
Sbjct: 7 VVLIGDSGVGKSNLLS 22
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.9 bits (58), Expect = 3.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
L+L+G+ GKS I+
Sbjct: 6 LVLLGEAAVGKSSIVL 21
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 3.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
++VGD GK+ +L
Sbjct: 8 CVVVGDGAVGKTCLLI 23
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 3.1
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 242 LLLVGDPGTGKSEILK 257
++L+G+ GK+ ++
Sbjct: 6 VVLLGEGCVGKTSLVL 21
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 27.1 bits (58), Expect = 3.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 240 SHLLLVGDPGTGKSEILK 257
L+G PGTGK+ L+
Sbjct: 44 PRATLLGRPGTGKTVTLR 61
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.7 bits (58), Expect = 3.1
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 242 LLLVGDPGTGKSEILK 257
++L+G+ G GK+ +++
Sbjct: 8 IVLIGNAGVGKTCLVR 23
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 27.3 bits (59), Expect = 3.2
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 239 ESHLLLVGDPGTGKSEIL--KFA-----KRMSPRSVLTT 270
E LL++ G+GK+ +L + A K ++P ++L
Sbjct: 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.9 bits (58), Expect = 3.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 221 VLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEIL 256
+ GG+ G L+ G GTGK+
Sbjct: 18 ISHGGLPIG----------RSTLVSGTSGTGKTLFS 43
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.8 bits (58), Expect = 3.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
++L+GD G GKS ++
Sbjct: 9 VILLGDGGVGKSSLMN 24
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
LLL+GD G GK+ +L
Sbjct: 9 LLLIGDSGVGKTCVLF 24
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 3.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 242 LLLVGDPGTGKSEILK 257
++LVGD G GK+ +L
Sbjct: 9 VMLVGDSGVGKTCLLV 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.5 bits (57), Expect = 3.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
L+++G G GKS +
Sbjct: 6 LVVLGSGGVGKSALTV 21
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 3.5
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 242 LLLVGDPGTGKSEILK 257
+ ++G GKS +
Sbjct: 7 IAILGYRSVGKSSLTI 22
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 3.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 242 LLLVGDPGTGKSEILK 257
++VGD GK+ +L
Sbjct: 6 CVVVGDGAVGKTCLLI 21
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 237 RAESHLLLVGDPGTGKSEILK 257
A +++ G +GK+ ++
Sbjct: 121 YASGMVIVTGKGNSGKTPLVH 141
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.6 bits (57), Expect = 4.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 239 ESHLLLVGDPGTGKSEILK-FAKRM 262
L++G TGKS I+K +
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINEL 53
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.1 bits (56), Expect = 5.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 239 ESHLLLVGDPGTGKSEILK 257
E L ++GD +GKS ++
Sbjct: 5 ELRLGVLGDARSGKSSLIH 23
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.6 bits (57), Expect = 5.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 241 HLLLVGDPGTGKSEILKF 258
+G G GK+ + KF
Sbjct: 48 IYGSIGRVGIGKTTLAKF 65
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.1 bits (56), Expect = 5.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 241 HLLLVGDPGTGKSEILKF-AKRMSPRSVLTTGVGTTTAGLTVSALRENGEWH 291
++L+ G PGTGK+ + + A + L G E
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHI 58
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 26.2 bits (56), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 240 SHLLLVGDPGTGKSEI 255
H+L G PGTGK+
Sbjct: 34 PHMLFYGPPGTGKTST 49
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.3 bits (56), Expect = 6.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 241 HLLLVGDPGTGKSEILK 257
HLLL G GTGK
Sbjct: 35 HLLLYGPNGTGKKTRCM 51
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 25.7 bits (55), Expect = 6.8
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 243 LLVGDPGTGKSEIL-KFAKRMSPRSVLTTGV 272
L VG +GK+ + + + +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITD 34
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 26.3 bits (57), Expect = 6.8
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 237 RAESHLLLVGDPGTGKSEILK--FAKRMSPRSVLTTGVGTTTAGLTVSALRENGEWHL 292
+ ++ + G+ G+GKS + TGV T
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 111
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 25.5 bits (55), Expect = 7.6
Identities = 15/75 (20%), Positives = 24/75 (32%)
Query: 271 GVGTTTAGLTVSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTI 330
G T ++A +G A A L D G+ T ++ E + I
Sbjct: 8 GYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAI 67
Query: 331 SVAKDKESKKVKVKS 345
A + + V S
Sbjct: 68 KQALGNHAYNIAVSS 82
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 25.7 bits (56), Expect = 7.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 226 VGRGGEDGSKVRAESHLLLVGDPGTGKSEILK 257
+GRG L+V P GK+ +L+
Sbjct: 40 IGRGQ----------RGLIVAPPKAGKTMLLQ 61
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 25.5 bits (54), Expect = 9.3
Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 12/123 (9%)
Query: 221 VLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLT 280
+L GG+ + G+ TGK+++ + G
Sbjct: 29 LLGGGIESM----------AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKII--F 76
Query: 281 VSALRENGEWHLEAGALVLSDGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESKK 340
+ L A + +D + + E ++ ++ K
Sbjct: 77 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 136
Query: 341 VKV 343
+ +
Sbjct: 137 LLI 139
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.4 bits (54), Expect = 9.6
Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 13/124 (10%)
Query: 221 VLAGGVGRGGEDGSKVRAESHLLLVGDPGTGKSEILKFAKRMSPRSVLTTGVGTTTAGLT 280
+L GG+ + + G+ G+GK+++ M G+ + +
Sbjct: 28 LLGGGIETQ----------AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV--IW 75
Query: 281 VSALRENGEWHLEAGALVLS-DGGVCCIDEFSSIKEHDRTSIHEAMEQQTISVAKDKESK 339
+ + A D + + + + + + +
Sbjct: 76 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDR 135
Query: 340 KVKV 343
VK+
Sbjct: 136 PVKL 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,287,478
Number of extensions: 60943
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 99
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)