BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13664
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 57 TMDI---ISSQGFPVERHFIQTEDGYILALHRIP---------SQGVPVLLMHGFAGASD 104
TM+I I+ G+P E + + TEDGYIL ++RIP Q V L HG ++
Sbjct: 5 TMNISQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASAT 64
Query: 105 MWV 107
W+
Sbjct: 65 NWI 67
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 57 TMDI---ISSQGFPVERHFIQTEDGYILALHRIP-----SQGV---PV-LLMHGFAGASD 104
TM+I I+ G+P E + + TEDGYIL + RIP S+ + PV L HG ++
Sbjct: 13 TMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT 72
Query: 105 MWVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135
W+ N L + + Y LG ++ N
Sbjct: 73 NWI-SNLPNNSLAFILADAGYDVWLGNSRGN 102
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 4 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 4 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 7 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 48
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRNDTTTDLLP--VPDV 122
GF E +I T G I A R+ G P+LL+HGF MW + V D+
Sbjct: 12 GFGSE--WINTSSGRIFA--RVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADL 67
Query: 123 SSYKW 127
Y W
Sbjct: 68 PGYGW 72
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GF E +I T G I A R+ G P+LL+HGF MW
Sbjct: 12 GFGSE--WINTSSGRIFA--RVGGDGPPLLLLHGFPQTHVMW 49
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GF E +I T G I A R+ G P+LL+HGF MW
Sbjct: 12 GFGSE--WINTSSGRIFA--RVGGDGPPLLLLHGFPQTHVMW 49
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GF E +I T G I A R+ G P+LL+HGF MW
Sbjct: 12 GFGSE--WINTSSGRIFA--RVGGDGPPLLLLHGFPQTHVMW 49
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 79 YILALHRIPSQGVPVLLMHG--FAGASDMW 106
Y+L R P+ G V+L+HG FA SD W
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSW 378
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 79 YILALHRIPSQGVPVLLMHG--FAGASDMW 106
Y+L R P+ G V+L+HG FA SD W
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSW 378
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 79 YILALHRIPSQGVPVLLMHG--FAGASDMW 106
Y+L R P+ G V+L+HG FA SD W
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSW 378
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 79 YILALHRIPSQGVPVLLMHG--FAGASDMW 106
Y+L R P+ G V+L+HG FA SD W
Sbjct: 329 YVLESGRAPTPGPTVVLVHGGPFAEDSDSW 358
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 79 YILALHRIPSQGVPVLLMHG--FAGASDMW 106
Y+L R P+ G V+L+HG FA SD W
Sbjct: 349 YVLESGRAPTPGPTVVLVHGGPFAEDSDSW 378
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPV-------LLMHGFAGASDMW 106
++ T D++ F + R Q +D Y++ HR VP L F+ ASD W
Sbjct: 147 LLATRDLVKIGDFGLMRALPQNDDHYVMQEHR----KVPFAWCAPESLKTRTFSHASDTW 202
Query: 107 VF 108
+F
Sbjct: 203 MF 204
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPV-------LLMHGFAGASDMW 106
++ T D++ F + R Q +D Y++ HR VP L F+ ASD W
Sbjct: 147 LLATRDLVKIGDFGLMRALPQNDDHYVMQEHR----KVPFAWCAPESLKTRTFSHASDTW 202
Query: 107 VF 108
+F
Sbjct: 203 MF 204
>pdb|4AXO|A Chain A, Structure Of The Clostridium Difficile Eutq Protein
pdb|4AXO|B Chain B, Structure Of The Clostridium Difficile Eutq Protein
Length = 151
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 8 DISVVVIITLYLISCSSTDYVFISKDSNLQWTLPD------VSYP 46
D ++ +II +S SS + +FI K S +Q+++PD V+YP
Sbjct: 92 DGTLDIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYVTYP 136
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPV-------LLMHGFAGASDMW 106
++ T D++ F + R Q +D Y++ HR VP L F+ ASD W
Sbjct: 143 LLATRDLVKIGDFGLMRALPQNDDHYVMQEHR----KVPFAWCAPESLKTRTFSHASDTW 198
Query: 107 VF 108
+F
Sbjct: 199 MF 200
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPV-------LLMHGFAGASDMW 106
++ T D++ F + R Q +D Y++ HR VP L F+ ASD W
Sbjct: 143 LLATRDLVKIGDFGLMRALPQNDDHYVMQEHR----KVPFAWCAPESLKTRTFSHASDTW 198
Query: 107 VF 108
+F
Sbjct: 199 MF 200
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPV-------LLMHGFAGASDMW 106
++ T D++ F + R Q +D Y++ HR VP L F+ ASD W
Sbjct: 153 LLATRDLVKIGDFGLMRALPQNDDHYVMQEHR----KVPFAWCAPESLKTRTFSHASDTW 208
Query: 107 VF 108
+F
Sbjct: 209 MF 210
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
Trmh Family From Porphyromonas Gingivalis
Length = 257
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 47 DPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAG 101
P+ +KN V T+ QG PV F+ DG L +P+ P +L+ G G
Sbjct: 158 QPTPLKNTVDTLAYFRRQGIPVYGAFL---DGQSLYEAPLPNFTEPAILVLGSEG 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,724,760
Number of Sequences: 62578
Number of extensions: 188157
Number of successful extensions: 420
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 36
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)