Query psy13664
Match_columns 139
No_of_seqs 132 out of 878
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:17:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2624|consensus 100.0 1.2E-31 2.6E-36 232.3 7.1 85 51-136 31-118 (403)
2 PF04083 Abhydro_lipase: Parti 99.9 1.5E-24 3.2E-29 145.1 6.0 54 57-110 1-63 (63)
3 PLN02872 triacylglycerol lipas 99.9 2.5E-24 5.4E-29 185.3 7.0 79 57-136 33-119 (395)
4 PLN02298 hydrolase, alpha/beta 98.0 1.5E-05 3.3E-10 65.1 6.3 76 56-137 20-100 (330)
5 PRK10985 putative hydrolase; P 97.8 2.3E-05 4.9E-10 64.8 4.1 65 66-136 29-99 (324)
6 PLN02385 hydrolase; alpha/beta 97.7 4.9E-05 1.1E-09 63.0 5.2 69 63-137 56-128 (349)
7 TIGR01836 PHA_synth_III_C poly 97.7 3.7E-05 8E-10 64.0 4.3 63 70-136 39-106 (350)
8 PRK10749 lysophospholipase L2; 97.7 5E-05 1.1E-09 62.8 4.5 63 68-137 30-94 (330)
9 PLN02511 hydrolase 97.6 7.7E-05 1.7E-09 63.8 5.2 66 65-136 68-141 (388)
10 PF12146 Hydrolase_4: Putative 97.5 5.7E-05 1.2E-09 51.9 2.0 53 78-137 1-56 (79)
11 COG2267 PldB Lysophospholipase 97.5 8.6E-05 1.9E-09 61.9 3.4 64 68-138 9-75 (298)
12 PRK00870 haloalkane dehalogena 97.3 0.00036 7.8E-09 56.2 5.0 66 65-137 16-86 (302)
13 TIGR01250 pro_imino_pep_2 prol 97.3 0.00031 6.6E-09 53.4 4.1 58 74-137 7-66 (288)
14 TIGR03101 hydr2_PEP hydrolase, 97.3 0.00023 5.1E-09 58.8 3.2 65 70-137 2-69 (266)
15 PHA02857 monoglyceride lipase; 97.1 0.00065 1.4E-08 53.5 4.3 58 73-137 5-65 (276)
16 TIGR03343 biphenyl_bphD 2-hydr 97.0 0.00073 1.6E-08 52.9 3.6 64 70-137 8-73 (282)
17 TIGR01607 PST-A Plasmodium sub 96.9 0.00067 1.5E-08 56.7 3.2 64 73-137 2-87 (332)
18 PRK05855 short chain dehydroge 96.9 0.0014 3.1E-08 56.4 4.6 59 71-137 5-64 (582)
19 PLN02824 hydrolase, alpha/beta 96.9 0.00081 1.7E-08 53.7 2.8 55 75-137 14-68 (294)
20 TIGR01249 pro_imino_pep_1 prol 96.8 0.0035 7.5E-08 51.0 6.4 61 69-137 5-66 (306)
21 TIGR01838 PHA_synth_I poly(R)- 96.8 0.0011 2.4E-08 60.1 3.7 57 79-137 172-233 (532)
22 PLN02578 hydrolase 96.8 0.0012 2.5E-08 55.3 3.3 64 65-137 62-125 (354)
23 PRK05077 frsA fermentation/res 96.8 0.0037 8.1E-08 54.3 6.6 73 58-137 158-235 (414)
24 PRK03592 haloalkane dehalogena 96.8 0.0017 3.8E-08 51.8 4.2 59 69-137 8-66 (295)
25 PLN02652 hydrolase; alpha/beta 96.7 0.0018 4E-08 56.0 4.3 63 68-137 110-176 (395)
26 TIGR02240 PHA_depoly_arom poly 96.6 0.0034 7.4E-08 49.8 5.0 57 73-137 6-64 (276)
27 PRK06489 hypothetical protein; 96.6 0.0045 9.8E-08 51.7 5.6 47 90-137 69-118 (360)
28 TIGR03056 bchO_mg_che_rel puta 96.6 0.0024 5.2E-08 49.2 3.6 60 70-137 7-67 (278)
29 PRK07868 acyl-CoA synthetase; 96.5 0.0031 6.6E-08 60.1 4.5 53 80-134 48-109 (994)
30 PRK10673 acyl-CoA esterase; Pr 96.4 0.0026 5.5E-08 49.0 2.8 40 90-137 16-55 (255)
31 COG1647 Esterase/lipase [Gener 96.3 0.0014 3E-08 54.3 0.5 42 90-138 15-56 (243)
32 PRK10566 esterase; Provisional 96.2 0.0042 9E-08 48.2 3.2 40 90-136 27-66 (249)
33 PRK03204 haloalkane dehalogena 96.2 0.0068 1.5E-07 49.0 4.3 65 63-137 9-73 (286)
34 PRK13604 luxD acyl transferase 96.2 0.0058 1.2E-07 52.1 3.8 63 66-135 7-75 (307)
35 COG0429 Predicted hydrolase of 96.1 0.0087 1.9E-07 51.9 4.7 67 65-136 46-116 (345)
36 PRK10115 protease 2; Provision 96.0 0.013 2.7E-07 54.3 5.4 71 63-138 411-488 (686)
37 PLN02211 methyl indole-3-aceta 95.9 0.0059 1.3E-07 49.4 2.5 40 90-136 18-57 (273)
38 PLN03084 alpha/beta hydrolase 95.8 0.011 2.3E-07 51.2 4.0 64 65-136 101-165 (383)
39 PRK10349 carboxylesterase BioH 95.5 0.0062 1.3E-07 47.4 1.4 39 91-137 14-52 (256)
40 TIGR03502 lipase_Pla1_cef extr 95.4 0.0084 1.8E-07 56.9 2.1 60 72-138 421-490 (792)
41 KOG1838|consensus 95.4 0.02 4.4E-07 50.7 4.3 66 63-134 88-164 (409)
42 PLN03087 BODYGUARD 1 domain co 95.2 0.028 6.1E-07 50.4 4.6 45 90-137 201-245 (481)
43 TIGR03100 hydr1_PEP hydrolase, 95.2 0.035 7.6E-07 44.9 4.7 63 72-138 6-71 (274)
44 KOG4178|consensus 95.0 0.036 7.8E-07 47.8 4.5 60 69-137 22-84 (322)
45 TIGR03611 RutD pyrimidine util 94.9 0.011 2.4E-07 44.3 1.0 39 90-136 13-51 (257)
46 TIGR00976 /NonD putative hydro 94.5 0.063 1.4E-06 47.9 4.9 61 73-137 1-66 (550)
47 KOG1455|consensus 94.1 0.079 1.7E-06 45.6 4.6 75 57-137 16-95 (313)
48 TIGR02427 protocat_pcaD 3-oxoa 94.1 0.034 7.4E-07 41.0 2.0 40 90-137 13-52 (251)
49 PLN02894 hydrolase, alpha/beta 94.0 0.12 2.6E-06 44.5 5.6 40 90-137 105-144 (402)
50 TIGR01839 PHA_synth_II poly(R) 93.8 0.053 1.2E-06 49.8 3.1 54 80-135 200-258 (560)
51 COG0596 MhpC Predicted hydrola 93.7 0.054 1.2E-06 38.8 2.4 44 90-138 21-64 (282)
52 TIGR01392 homoserO_Ac_trn homo 93.6 0.15 3.2E-06 42.4 5.3 43 90-135 31-83 (351)
53 cd00707 Pancreat_lipase_like P 93.2 0.042 9.2E-07 45.1 1.4 54 76-135 22-77 (275)
54 PF12715 Abhydrolase_7: Abhydr 93.1 0.052 1.1E-06 47.9 1.9 75 62-137 82-173 (390)
55 PRK14875 acetoin dehydrogenase 93.1 0.11 2.3E-06 42.5 3.5 54 77-138 117-171 (371)
56 PLN02679 hydrolase, alpha/beta 92.9 0.043 9.4E-07 46.1 1.0 40 90-137 88-127 (360)
57 PRK07581 hypothetical protein; 92.8 0.36 7.9E-06 39.6 6.3 44 90-137 41-84 (339)
58 KOG1454|consensus 92.8 0.3 6.5E-06 41.4 6.0 40 90-135 58-97 (326)
59 TIGR02821 fghA_ester_D S-formy 92.7 0.16 3.5E-06 41.0 4.0 43 90-136 42-86 (275)
60 PLN02980 2-oxoglutarate decarb 91.9 0.37 8E-06 49.0 6.2 76 54-137 1329-1410(1655)
61 COG1506 DAP2 Dipeptidyl aminop 91.6 0.56 1.2E-05 42.8 6.6 75 59-138 356-437 (620)
62 PRK00175 metX homoserine O-ace 91.5 0.38 8.3E-06 40.8 5.2 44 90-135 48-102 (379)
63 PRK08775 homoserine O-acetyltr 91.5 0.59 1.3E-05 38.7 6.1 57 77-136 44-111 (343)
64 PRK10162 acetyl esterase; Prov 91.1 0.46 1E-05 39.4 5.1 64 67-137 56-125 (318)
65 KOG2382|consensus 90.4 0.14 3E-06 44.1 1.4 42 90-137 52-95 (315)
66 PLN00021 chlorophyllase 89.8 0.76 1.7E-05 38.7 5.4 64 66-136 22-91 (313)
67 TIGR01840 esterase_phb esteras 89.0 0.26 5.6E-06 38.1 1.9 43 90-136 13-55 (212)
68 PRK11071 esterase YqiA; Provis 88.9 0.15 3.2E-06 39.5 0.4 43 91-136 2-44 (190)
69 KOG4409|consensus 85.9 1.4 3.1E-05 38.7 4.8 67 60-136 57-128 (365)
70 PRK11126 2-succinyl-6-hydroxy- 84.8 0.46 1E-05 36.2 1.2 19 90-108 2-20 (242)
71 COG3243 PhaC Poly(3-hydroxyalk 84.5 0.57 1.2E-05 42.1 1.8 43 90-134 107-149 (445)
72 PF02273 Acyl_transf_2: Acyl t 83.6 1.6 3.4E-05 37.2 3.9 56 69-131 3-64 (294)
73 KOG4667|consensus 82.3 0.63 1.4E-05 39.0 1.1 47 87-138 30-76 (269)
74 PLN02442 S-formylglutathione h 80.7 1.1 2.3E-05 36.6 1.9 40 90-133 47-86 (283)
75 COG4757 Predicted alpha/beta h 80.3 1.1 2.4E-05 37.9 1.8 61 71-137 8-70 (281)
76 PRK11460 putative hydrolase; P 80.0 0.62 1.3E-05 37.0 0.3 38 90-134 16-53 (232)
77 KOG4391|consensus 79.8 2.6 5.6E-05 35.6 3.9 68 63-136 49-118 (300)
78 TIGR03230 lipo_lipase lipoprot 79.2 1.1 2.3E-05 40.2 1.5 43 90-136 41-85 (442)
79 TIGR01738 bioH putative pimelo 78.9 1.1 2.4E-05 32.8 1.3 19 90-108 4-22 (245)
80 TIGR03695 menH_SHCHC 2-succiny 78.2 1.2 2.7E-05 32.4 1.4 19 90-108 1-19 (251)
81 COG0412 Dienelactone hydrolase 77.9 2.6 5.6E-05 34.0 3.3 58 69-134 3-64 (236)
82 PF09680 Tiny_TM_bacill: Prote 74.4 2.2 4.8E-05 23.7 1.4 14 10-23 9-22 (24)
83 PRK11251 DNA-binding transcrip 74.1 10 0.00022 27.9 5.3 56 9-75 5-60 (109)
84 PF01738 DLH: Dienelactone hyd 70.6 1 2.3E-05 34.6 -0.7 40 90-136 14-53 (218)
85 COG5633 Predicted periplasmic 68.4 9.2 0.0002 28.9 4.0 27 63-89 39-65 (123)
86 PRK15348 type III secretion sy 67.7 6.3 0.00014 32.9 3.3 52 9-81 6-57 (249)
87 PF12048 DUF3530: Protein of u 66.5 16 0.00034 30.8 5.6 66 61-130 55-123 (310)
88 KOG2237|consensus 64.1 11 0.00025 35.7 4.6 71 61-138 434-513 (712)
89 PF06441 EHN: Epoxide hydrolas 62.4 10 0.00022 27.7 3.3 34 70-103 69-105 (112)
90 PRK11443 lipoprotein; Provisio 62.1 4.3 9.3E-05 30.4 1.2 32 10-41 4-35 (124)
91 PF08139 LPAM_1: Prokaryotic m 61.1 6.5 0.00014 21.9 1.5 13 12-24 13-25 (25)
92 PF05448 AXE1: Acetyl xylan es 60.7 5.3 0.00012 33.8 1.7 66 64-137 52-122 (320)
93 COG3042 Hlx Putative hemolysin 57.8 59 0.0013 23.1 6.3 67 9-90 4-70 (85)
94 COG0657 Aes Esterase/lipase [L 56.5 9.9 0.00021 30.9 2.5 44 90-138 79-124 (312)
95 PF04202 Mfp-3: Foot protein 3 55.9 7.7 0.00017 26.6 1.5 17 8-24 3-19 (71)
96 PF03403 PAF-AH_p_II: Platelet 54.7 4.2 9E-05 35.3 0.1 38 91-135 101-139 (379)
97 COG2936 Predicted acyl esteras 54.0 43 0.00093 31.2 6.4 72 63-136 14-92 (563)
98 cd00312 Esterase_lipase Estera 51.6 28 0.0006 30.2 4.7 55 74-133 74-134 (493)
99 PF12697 Abhydrolase_6: Alpha/ 49.9 11 0.00024 26.9 1.6 15 93-107 1-15 (228)
100 TIGR01732 tiny_TM_bacill conse 49.4 12 0.00026 21.1 1.3 13 11-23 12-24 (26)
101 PF02129 Peptidase_S15: X-Pro 48.4 8.2 0.00018 31.0 0.8 59 77-137 1-70 (272)
102 PF13117 Cag12: Cag pathogenic 48.1 7.1 0.00015 29.0 0.4 23 14-41 2-24 (113)
103 PF01674 Lipase_2: Lipase (cla 47.3 12 0.00025 30.4 1.6 20 90-109 1-21 (219)
104 PF06500 DUF1100: Alpha/beta h 45.9 40 0.00088 30.1 4.8 73 57-135 154-229 (411)
105 PF11353 DUF3153: Protein of u 43.8 35 0.00076 27.0 3.8 65 9-80 1-68 (209)
106 COG5645 Predicted periplasmic 42.9 17 0.00037 25.6 1.6 17 9-25 4-20 (80)
107 PF10503 Esterase_phd: Esteras 42.3 19 0.00042 29.1 2.1 38 90-131 16-53 (220)
108 COG3417 FlgN Collagen-binding 42.0 16 0.00034 29.8 1.5 16 9-24 7-22 (200)
109 PF07819 PGAP1: PGAP1-like pro 41.9 14 0.00031 29.5 1.3 44 90-134 4-49 (225)
110 KOG3551|consensus 40.6 20 0.00044 32.4 2.1 41 63-103 446-498 (506)
111 cd04928 ACT_TyrKc Uncharacteri 40.2 52 0.0011 22.0 3.6 33 55-87 16-49 (68)
112 PRK10781 rcsF outer membrane l 39.1 18 0.0004 27.6 1.4 14 11-24 5-18 (133)
113 TIGR03042 PS_II_psbQ_bact phot 39.0 21 0.00045 27.6 1.7 14 11-24 8-21 (142)
114 PLN02965 Probable pheophorbida 38.0 20 0.00043 27.9 1.5 17 92-108 5-21 (255)
115 PF05057 DUF676: Putative seri 37.8 14 0.00031 29.1 0.7 17 91-107 5-21 (217)
116 PF01015 Ribosomal_S3Ae: Ribos 37.8 32 0.00069 27.6 2.7 27 60-86 94-121 (194)
117 PF11839 DUF3359: Protein of u 37.5 24 0.00051 25.6 1.7 16 9-24 6-21 (96)
118 TIGR02722 lp_ uncharacterized 36.3 21 0.00046 28.0 1.4 16 9-24 5-20 (189)
119 PF12695 Abhydrolase_5: Alpha/ 35.9 19 0.00041 24.8 1.0 16 92-107 1-16 (145)
120 PF02230 Abhydrolase_2: Phosph 35.8 14 0.00031 28.5 0.4 19 90-108 14-32 (216)
121 PF10794 DUF2606: Protein of u 35.5 25 0.00053 26.8 1.6 15 10-24 17-31 (131)
122 PRK04057 30S ribosomal protein 34.7 44 0.00096 27.1 3.1 28 59-86 87-115 (203)
123 COG3458 Acetyl esterase (deace 34.2 1.8E+02 0.0038 25.4 6.7 55 76-138 64-123 (321)
124 cd04927 ACT_ACR-like_2 Second 34.1 1.1E+02 0.0024 20.1 4.6 34 55-88 15-49 (76)
125 cd04926 ACT_ACR_4 C-terminal 32.3 78 0.0017 20.5 3.5 33 55-87 16-48 (72)
126 TIGR02898 spore_YhcN_YlaJ spor 32.2 29 0.00064 27.0 1.6 16 9-24 2-17 (158)
127 KOG2100|consensus 31.7 1.7E+02 0.0036 28.0 6.8 83 54-138 483-572 (755)
128 COG2143 Thioredoxin-related pr 31.6 29 0.00063 27.8 1.5 17 9-25 6-22 (182)
129 PRK15396 murein lipoprotein; P 31.4 35 0.00076 23.7 1.7 15 11-25 10-24 (78)
130 PF11153 DUF2931: Protein of u 31.2 24 0.00053 27.9 1.1 14 11-24 5-18 (216)
131 COG1505 Serine proteases of th 31.1 1.2E+02 0.0025 28.9 5.5 71 63-138 389-464 (648)
132 COG0400 Predicted esterase [Ge 30.9 31 0.00068 27.6 1.6 19 90-108 18-36 (207)
133 PRK00377 cbiT cobalt-precorrin 30.3 63 0.0014 24.7 3.2 43 56-98 153-195 (198)
134 PF06692 MNSV_P7B: Melon necro 30.1 34 0.00073 22.8 1.4 14 5-18 9-22 (61)
135 KOG3847|consensus 29.9 31 0.00067 30.6 1.5 39 91-136 119-157 (399)
136 PF11873 DUF3393: Domain of un 29.6 34 0.00073 27.8 1.6 15 10-24 4-18 (204)
137 PF14120 YhzD: YhzD-like prote 29.4 41 0.0009 22.6 1.7 33 53-85 29-61 (61)
138 cd04900 ACT_UUR-like_1 ACT dom 29.4 1.5E+02 0.0033 19.0 4.5 33 55-87 16-49 (73)
139 TIGR00752 slp outer membrane l 28.4 34 0.00074 27.3 1.4 13 12-24 8-20 (182)
140 PRK13792 lysozyme inhibitor; P 27.8 2.7E+02 0.0058 21.0 8.1 38 90-134 77-115 (127)
141 COG3181 Uncharacterized protei 27.0 22 0.00049 30.7 0.2 16 118-134 235-250 (319)
142 PRK10866 outer membrane biogen 26.9 41 0.00088 27.2 1.7 14 11-24 9-22 (243)
143 TIGR01742 SA_tandem_lipo Staph 26.6 13 0.00028 31.3 -1.3 21 52-72 48-68 (255)
144 PF02402 Lysis_col: Lysis prot 26.4 43 0.00094 21.2 1.3 15 11-25 8-22 (46)
145 PF00151 Lipase: Lipase; Inte 25.8 19 0.00041 30.7 -0.5 40 90-133 71-113 (331)
146 TIGR03302 OM_YfiO outer membra 25.4 45 0.00097 25.5 1.6 16 9-24 4-19 (235)
147 PF13627 LPAM_2: Prokaryotic l 25.4 60 0.0013 17.8 1.6 15 10-24 3-17 (24)
148 KOG2281|consensus 24.8 39 0.00084 32.6 1.3 61 69-136 614-688 (867)
149 PRK11548 outer membrane biogen 24.7 45 0.00097 24.0 1.4 20 51-70 46-65 (113)
150 COG1890 RPS1A Ribosomal protei 24.7 69 0.0015 26.4 2.6 27 60-86 96-123 (214)
151 PF12912 N_NLPC_P60: NLPC_P60 24.5 25 0.00054 25.5 0.0 14 11-24 3-16 (124)
152 PF14991 MLANA: Protein melan- 23.9 26 0.00057 26.3 0.0 15 9-23 31-45 (118)
153 TIGR01849 PHB_depoly_PhaZ poly 23.7 69 0.0015 28.4 2.6 62 64-134 71-139 (406)
154 TIGR03511 GldH_lipo gliding mo 23.4 94 0.002 24.0 3.0 32 12-43 10-43 (156)
155 PF02468 PsbN: Photosystem II 23.3 57 0.0012 20.4 1.5 22 9-30 5-26 (43)
156 PF03959 FSH1: Serine hydrolas 23.2 31 0.00068 26.8 0.3 19 90-108 4-22 (212)
157 PRK09973 putative outer membra 22.9 62 0.0013 23.0 1.8 15 11-25 9-23 (85)
158 PF04270 Strep_his_triad: Stre 22.9 17 0.00038 23.6 -1.0 25 74-98 2-27 (53)
159 PF04390 LptE: Lipopolysacchar 22.3 29 0.00063 24.8 0.0 12 12-23 1-12 (155)
160 cd04925 ACT_ACR_2 ACT domain-c 22.3 2.2E+02 0.0048 18.4 4.3 33 55-87 15-47 (74)
161 COG3009 Uncharacterized protei 21.9 58 0.0013 26.4 1.6 18 1-24 1-18 (190)
162 PRK02463 OxaA-like protein pre 21.5 58 0.0013 27.8 1.7 16 10-25 12-27 (307)
163 PRK10175 lipoprotein; Provisio 21.0 52 0.0011 22.9 1.0 15 10-24 4-18 (75)
164 COG4594 FecB ABC-type Fe3+-cit 20.9 1.8E+02 0.0038 25.2 4.4 16 9-24 9-24 (310)
165 PRK10598 lipoprotein; Provisio 20.8 52 0.0011 26.4 1.2 27 11-37 8-35 (186)
166 PF14090 HTH_39: Helix-turn-he 20.7 1.9E+02 0.0041 18.9 3.7 19 61-79 37-57 (70)
167 PF07137 VDE: Violaxanthin de- 20.6 1.5E+02 0.0032 24.2 3.7 46 64-110 54-122 (198)
168 PRK11372 lysozyme inhibitor; P 20.3 71 0.0015 23.2 1.7 14 11-24 7-20 (109)
No 1
>KOG2624|consensus
Probab=99.97 E-value=1.2e-31 Score=232.34 Aligned_cols=85 Identities=39% Similarity=0.636 Sum_probs=81.0
Q ss_pred cccCCCHHHHHHHcCCcceEEEEecCCCcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeE
Q psy13664 51 IKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKW 127 (139)
Q Consensus 51 ~~~~~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDV 127 (139)
.+..+++.++|+++||++|+|.|+|+|||+|++||||++ ||||||||||++||+.|+.|+|++||||.|||+ ||||
T Consensus 31 ~~~~~~~~~~i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~Lada-GYDV 109 (403)
T KOG2624|consen 31 PELVMDTPEIIEKYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADA-GYDV 109 (403)
T ss_pred chhcccHHHHHHHcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHc-CCce
Confidence 356789999999999999999999999999999999865 899999999999999999999999999999999 9999
Q ss_pred EEcCCCCCC
Q psy13664 128 ELGGAQSNH 136 (139)
Q Consensus 128 WL~n~RG~~ 136 (139)
||||.|||+
T Consensus 110 WLgN~RGn~ 118 (403)
T KOG2624|consen 110 WLGNNRGNT 118 (403)
T ss_pred eeecCcCcc
Confidence 999999975
No 2
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=99.91 E-value=1.5e-24 Score=145.11 Aligned_cols=54 Identities=50% Similarity=0.922 Sum_probs=39.5
Q ss_pred HHHHHHHcCCcceEEEEecCCCcEEEEEEeCCC---------CCeEEEecCcccccccceecC
Q psy13664 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQ---------GVPVLLMHGFAGASDMWVFRN 110 (139)
Q Consensus 57 ~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~~---------k~PVlL~HGll~ss~~wv~~g 110 (139)
++|+|+++||++|+|.|+|+|||+|+|||||++ ||||||||||++||+.|++||
T Consensus 1 ~~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~wv~ng 63 (63)
T PF04083_consen 1 VPELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDWVLNG 63 (63)
T ss_dssp HHHHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGGCSS-
T ss_pred CHHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHHHcCC
Confidence 479999999999999999999999999999743 799999999999999999985
No 3
>PLN02872 triacylglycerol lipase
Probab=99.90 E-value=2.5e-24 Score=185.32 Aligned_cols=79 Identities=33% Similarity=0.599 Sum_probs=74.2
Q ss_pred HHHHHHHcCCcceEEEEecCCCcEEEEEEeCCC--------CCeEEEecCcccccccceecCCCCCccccccCCCCCeEE
Q psy13664 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQ--------GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWE 128 (139)
Q Consensus 57 ~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~~--------k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVW 128 (139)
++|+|+++|||+|+|.|+|+|||+|+|+|||.+ ++||+|+||++++++.|..+++.+++|+.||++ |||||
T Consensus 33 ~~~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~-GydV~ 111 (395)
T PLN02872 33 CAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADH-GFDVW 111 (395)
T ss_pred HHHHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhC-CCCcc
Confidence 589999999999999999999999999999732 689999999999999999998889999999998 99999
Q ss_pred EcCCCCCC
Q psy13664 129 LGGAQSNH 136 (139)
Q Consensus 129 L~n~RG~~ 136 (139)
++|+||++
T Consensus 112 l~n~RG~~ 119 (395)
T PLN02872 112 VGNVRGTR 119 (395)
T ss_pred cccccccc
Confidence 99999974
No 4
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.99 E-value=1.5e-05 Score=65.11 Aligned_cols=76 Identities=14% Similarity=0.340 Sum_probs=56.3
Q ss_pred CHHHHHHHcCCcceEEEEecCCCcEEEEEEe-CCC----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEc
Q psy13664 56 PTMDIISSQGFPVERHFIQTEDGYILALHRI-PSQ----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELG 130 (139)
Q Consensus 56 ~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RI-p~~----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~ 130 (139)
..++..+-.|.+.|...+++.||..|..++. +.+ ++.|+|+||+.+++ .|.. ..++..|+++ ||.|+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~-~~~~----~~~~~~L~~~-Gy~V~~~ 93 (330)
T PLN02298 20 PEEEYYALKGIKGSKSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDI-SWTF----QSTAIFLAQM-GFACFAL 93 (330)
T ss_pred CHHHHhhccCCccccceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCc-ceeh----hHHHHHHHhC-CCEEEEe
Confidence 3456677778888888899999999876554 322 45599999997654 4432 2355668888 9999999
Q ss_pred CCCCCCC
Q psy13664 131 GAQSNHP 137 (139)
Q Consensus 131 n~RG~~~ 137 (139)
|+||++.
T Consensus 94 D~rGhG~ 100 (330)
T PLN02298 94 DLEGHGR 100 (330)
T ss_pred cCCCCCC
Confidence 9999874
No 5
>PRK10985 putative hydrolase; Provisional
Probab=97.80 E-value=2.3e-05 Score=64.78 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=50.2
Q ss_pred CcceEEEEecCCCcEEEEEEeCCC-----CCeEEEecCccccccc-ceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 66 FPVERHFIQTEDGYILALHRIPSQ-----GVPVLLMHGFAGASDM-WVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 66 Y~~E~h~V~T~DGyiL~L~RIp~~-----k~PVlL~HGll~ss~~-wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
.+.+...++|+||..+.+.+...+ +|+|+++||+.+++.. |+ ..++-.|+++ ||.|...|+||..
T Consensus 29 ~~~~~~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~-----~~~~~~l~~~-G~~v~~~d~rG~g 99 (324)
T PRK10985 29 FTPYWQRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYA-----HGLLEAAQKR-GWLGVVMHFRGCS 99 (324)
T ss_pred CCcceeEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHH-----HHHHHHHHHC-CCEEEEEeCCCCC
Confidence 445677799999999888776321 6889999999887654 32 3355678888 9999999999974
No 6
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.73 E-value=4.9e-05 Score=63.04 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=52.2
Q ss_pred HcCCcceEEEEecCCCcEEEEEEe-CCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRI-PSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RI-p~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
..|+..++....|.||..|..... |.+ +++|+|+||+.+++..|.. .++-.|+++ ||.|...|+||++.
T Consensus 56 ~~~~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~-----~~~~~l~~~-g~~v~~~D~~G~G~ 128 (349)
T PLN02385 56 PSGIKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFE-----GIARKIASS-GYGVFAMDYPGFGL 128 (349)
T ss_pred ccCcceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHH-----HHHHHHHhC-CCEEEEecCCCCCC
Confidence 346777888888999998866554 322 7889999999887765432 234567887 99999999999874
No 7
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.73 E-value=3.7e-05 Score=64.04 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=45.7
Q ss_pred EEEEecCCCcEEEEEEeCCC-----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 70 RHFIQTEDGYILALHRIPSQ-----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 70 ~h~V~T~DGyiL~L~RIp~~-----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
...|-..++.. |+|+... ++|||++||+..++-.|... +.++++.+|+++ ||+||+.|+||++
T Consensus 39 ~~~v~~~~~~~--l~~~~~~~~~~~~~pvl~v~~~~~~~~~~d~~-~~~~~~~~L~~~-G~~V~~~D~~g~g 106 (350)
T TIGR01836 39 KEVVYREDKVV--LYRYTPVKDNTHKTPLLIVYALVNRPYMLDLQ-EDRSLVRGLLER-GQDVYLIDWGYPD 106 (350)
T ss_pred CceEEEcCcEE--EEEecCCCCcCCCCcEEEeccccccceeccCC-CCchHHHHHHHC-CCeEEEEeCCCCC
Confidence 33444455544 5555321 67999999997766555443 568999999998 9999999999865
No 8
>PRK10749 lysophospholipase L2; Provisional
Probab=97.68 E-value=5e-05 Score=62.75 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=47.8
Q ss_pred ceEEEEecCCCcEEEEEEeCC--CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 68 VERHFIQTEDGYILALHRIPS--QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 68 ~E~h~V~T~DGyiL~L~RIp~--~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
-|+..+...||+.|..+.... .+++|+|+||+.+++..|-. ++..|+++ ||.|+..|+||++.
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~------~~~~l~~~-g~~v~~~D~~G~G~ 94 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAE------LAYDLFHL-GYDVLIIDHRGQGR 94 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHH------HHHHHHHC-CCeEEEEcCCCCCC
Confidence 356667778999887666543 37899999999877765543 45557777 99999999999874
No 9
>PLN02511 hydrolase
Probab=97.65 E-value=7.7e-05 Score=63.77 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=49.3
Q ss_pred CCcceEEEEecCCCcEEEEEEeC-------CCCCeEEEecCccccccc-ceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 65 GFPVERHFIQTEDGYILALHRIP-------SQGVPVLLMHGFAGASDM-WVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 65 GY~~E~h~V~T~DGyiL~L~RIp-------~~k~PVlL~HGll~ss~~-wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
....++..+.|+||..+.+-+.. ..+|+|+|+||+.+++.. |+.. ++..+.++ ||.|...|+||++
T Consensus 68 ~~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~-----~~~~~~~~-g~~vv~~d~rG~G 141 (388)
T PLN02511 68 AVRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRH-----MLLRARSK-GWRVVVFNSRGCA 141 (388)
T ss_pred CCceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHH-----HHHHHHHC-CCEEEEEecCCCC
Confidence 34457778999999999986653 127789999999887764 6532 23344566 9999999999975
No 10
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.50 E-value=5.7e-05 Score=51.85 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=41.3
Q ss_pred CcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 78 GYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 78 GyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
|..|..++...+ |..|++.||+...+..+ ..+|-.|+++ ||.|+..|.||++.
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry------~~~a~~L~~~-G~~V~~~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRY------AHLAEFLAEQ-GYAVFAYDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHH------HHHHHHHHhC-CCEEEEECCCcCCC
Confidence 455665555322 77899999999988853 3478889998 99999999999874
No 11
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.49 E-value=8.6e-05 Score=61.88 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=53.3
Q ss_pred ceEEEEecCCCcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 68 VERHFIQTEDGYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 68 ~E~h~V~T~DGyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
.++..+.+.||-.+..++.... +..|+|.||+...+..|-. +++.|+.+ ||+|+..|+||++-.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~------la~~l~~~-G~~V~~~D~RGhG~S 75 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEE------LADDLAAR-GFDVYALDLRGHGRS 75 (298)
T ss_pred cccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHH------HHHHHHhC-CCEEEEecCCCCCCC
Confidence 3567788899999988887644 4779999999999998654 78889988 999999999998753
No 12
>PRK00870 haloalkane dehalogenase; Provisional
Probab=97.32 E-value=0.00036 Score=56.19 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCcceEEEEec--CCCcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 65 GFPVERHFIQT--EDGYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 65 GY~~E~h~V~T--~DGyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.||.+...|.- .||....++-...+ ++||+|+||+.+++..|-. ++-.|+++ ||.|+..|+||++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~------~~~~L~~~-gy~vi~~Dl~G~G~ 86 (302)
T PRK00870 16 DYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRK------MIPILAAA-GHRVIAPDLIGFGR 86 (302)
T ss_pred CCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHH------HHHHHHhC-CCEEEEECCCCCCC
Confidence 35554444443 35665566555322 7899999999988888843 34457777 99999999999874
No 13
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=97.30 E-value=0.00031 Score=53.43 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=40.4
Q ss_pred ecCCCcEEEEEEeCCC--CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 74 QTEDGYILALHRIPSQ--GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 74 ~T~DGyiL~L~RIp~~--k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.|-||..+...+...+ ++||+++||..+++..|... +..+|.+. ||.|+..|.||++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~~-----~~~~l~~~-g~~vi~~d~~G~G~ 66 (288)
T TIGR01250 7 ITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLEN-----LRELLKEE-GREVIMYDQLGCGY 66 (288)
T ss_pred ecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHHH-----HHHHHHhc-CCEEEEEcCCCCCC
Confidence 4555666655555432 68999999988777665543 34456665 99999999999753
No 14
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=97.25 E-value=0.00023 Score=58.82 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=48.0
Q ss_pred EEEEecCCCcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 70 RHFIQTEDGYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 70 ~h~V~T~DGyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
...+++.+|.....++-|.+ +++|+++||+......|-.. -..++-.|+++ ||.|+..|+||++.
T Consensus 2 ~~~l~~~~g~~~~~~~~p~~~~~~~~VlllHG~g~~~~~~~~~--~~~la~~La~~-Gy~Vl~~Dl~G~G~ 69 (266)
T TIGR03101 2 PFFLDAPHGFRFCLYHPPVAVGPRGVVIYLPPFAEEMNKSRRM--VALQARAFAAG-GFGVLQIDLYGCGD 69 (266)
T ss_pred CEEecCCCCcEEEEEecCCCCCCceEEEEECCCcccccchhHH--HHHHHHHHHHC-CCEEEEECCCCCCC
Confidence 35678889999998998754 56789999987655433211 12356678888 99999999999863
No 15
>PHA02857 monoglyceride lipase; Provisional
Probab=97.11 E-value=0.00065 Score=53.54 Aligned_cols=58 Identities=10% Similarity=-0.032 Sum_probs=44.0
Q ss_pred EecCCCcEEEEEEe-CCC--CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 73 IQTEDGYILALHRI-PSQ--GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 73 V~T~DGyiL~L~RI-p~~--k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+...||..|..+.. |.. ++.|||.||+.+++..|-. ++-.|++. ||-|...|.||++.
T Consensus 5 ~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~------~~~~l~~~-g~~via~D~~G~G~ 65 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEE------LAENISSL-GILVFSHDHIGHGR 65 (276)
T ss_pred eecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHH------HHHHHHhC-CCEEEEccCCCCCC
Confidence 45679998877654 422 5666777999999888753 45568887 99999999999874
No 16
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=97.00 E-value=0.00073 Score=52.88 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=41.7
Q ss_pred EEEEecCCCcE-EEEEEe-CCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 70 RHFIQTEDGYI-LALHRI-PSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 70 ~h~V~T~DGyi-L~L~RI-p~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+..+.|.+|-. .++|.. .++++||+|+||+.+++..|-... ..+. .|+++ ||.|+..|.||++.
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~g~~~~ivllHG~~~~~~~~~~~~--~~~~-~l~~~-~~~vi~~D~~G~G~ 73 (282)
T TIGR03343 8 KFVKINEKGLSNFRIHYNEAGNGEAVIMLHGGGPGAGGWSNYY--RNIG-PFVDA-GYRVILKDSPGFNK 73 (282)
T ss_pred eEEEcccccccceeEEEEecCCCCeEEEECCCCCchhhHHHHH--HHHH-HHHhC-CCEEEEECCCCCCC
Confidence 44555656442 333332 334789999999998888774311 1222 35566 99999999999864
No 17
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.95 E-value=0.00067 Score=56.68 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=47.2
Q ss_pred EecCCCcEEEEEEeCC--CCCeEEEecCcccccc-cceecC---------------C----CCCccccccCCCCCeEEEc
Q psy13664 73 IQTEDGYILALHRIPS--QGVPVLLMHGFAGASD-MWVFRN---------------D----TTTDLLPVPDVSSYKWELG 130 (139)
Q Consensus 73 V~T~DGyiL~L~RIp~--~k~PVlL~HGll~ss~-~wv~~g---------------~----~~sla~~Lad~~GyDVWL~ 130 (139)
+.+.||..|..+.-.. .|..|++.||+...+. .++... . ..+++-.|+++ ||+|+..
T Consensus 2 ~~~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~-G~~V~~~ 80 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKN-GYSVYGL 80 (332)
T ss_pred ccCCCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHC-CCcEEEe
Confidence 5678999887776532 3788999999999997 333210 0 02467788888 9999999
Q ss_pred CCCCCCC
Q psy13664 131 GAQSNHP 137 (139)
Q Consensus 131 n~RG~~~ 137 (139)
|.||++.
T Consensus 81 D~rGHG~ 87 (332)
T TIGR01607 81 DLQGHGE 87 (332)
T ss_pred cccccCC
Confidence 9999873
No 18
>PRK05855 short chain dehydrogenase; Validated
Probab=96.86 E-value=0.0014 Score=56.43 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=44.8
Q ss_pred EEEecCCCcEEEEEEeCCC-CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 71 HFIQTEDGYILALHRIPSQ-GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 71 h~V~T~DGyiL~L~RIp~~-k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+.+++.||..|..+..... ++||+|+||+.+++..|-. +.-.| .+ ||.|+..|+||++.
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~------~~~~L-~~-~~~Vi~~D~~G~G~ 64 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDG------VAPLL-AD-RFRVVAYDVRGAGR 64 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHH------HHHHh-hc-ceEEEEecCCCCCC
Confidence 4556678988876665533 7899999999999988864 22335 44 99999999999863
No 19
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=96.85 E-value=0.00081 Score=53.72 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=41.6
Q ss_pred cCCCcEEEEEEeCCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 75 TEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 75 T~DGyiL~L~RIp~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+-||..+.......+++||+|+||+.+++..|-... -.|+++ |.|+..|+||++.
T Consensus 14 ~~~~~~i~y~~~G~~~~~vlllHG~~~~~~~w~~~~------~~L~~~--~~vi~~DlpG~G~ 68 (294)
T PLN02824 14 RWKGYNIRYQRAGTSGPALVLVHGFGGNADHWRKNT------PVLAKS--HRVYAIDLLGYGY 68 (294)
T ss_pred EEcCeEEEEEEcCCCCCeEEEECCCCCChhHHHHHH------HHHHhC--CeEEEEcCCCCCC
Confidence 347777765554434789999999999999987532 346654 6999999999875
No 20
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=96.84 E-value=0.0035 Score=51.00 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=41.8
Q ss_pred eEEEEecCCCcEEEEEEeCCC-CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 69 ERHFIQTEDGYILALHRIPSQ-GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RIp~~-k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
++-.+...||..|.......+ ++||+|+||..+++..+- ....+..+ +|+|...|.||++.
T Consensus 5 ~~~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~~-------~~~~~~~~-~~~vi~~D~~G~G~ 66 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDPG-------CRRFFDPE-TYRIVLFDQRGCGK 66 (306)
T ss_pred cCCeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCCHH-------HHhccCcc-CCEEEEECCCCCCC
Confidence 345677788888866554432 788999999877765431 11123345 99999999999863
No 21
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.82 E-value=0.0011 Score=60.05 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=43.8
Q ss_pred cEEEEEEeCCC-----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 79 YILALHRIPSQ-----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 79 yiL~L~RIp~~-----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
-.+.|.++... ++|||++||+....-.|-.. +++|+.-+|+++ ||+|++.|+||.+.
T Consensus 172 ~~~eLi~Y~P~t~~~~~~PlLiVp~~i~k~yilDL~-p~~Slv~~L~~q-Gf~V~~iDwrgpg~ 233 (532)
T TIGR01838 172 ELFQLIQYEPTTETVHKTPLLIVPPWINKYYILDLR-PQNSLVRWLVEQ-GHTVFVISWRNPDA 233 (532)
T ss_pred CcEEEEEeCCCCCcCCCCcEEEECcccccceeeecc-cchHHHHHHHHC-CcEEEEEECCCCCc
Confidence 34556666422 79999999997666666443 578999999998 99999999998753
No 22
>PLN02578 hydrolase
Probab=96.79 E-value=0.0012 Score=55.27 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCcceEEEEecCCCcEEEEEEeCCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 65 GY~~E~h~V~T~DGyiL~L~RIp~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+++.+.+...+.+|..+.... .++++||+|+||+.+++..|-..-+ .|+ + +|.|...|+||++.
T Consensus 62 ~~~~~~~~~~~~~~~~i~Y~~-~g~g~~vvliHG~~~~~~~w~~~~~------~l~-~-~~~v~~~D~~G~G~ 125 (354)
T PLN02578 62 PFKKEGYNFWTWRGHKIHYVV-QGEGLPIVLIHGFGASAFHWRYNIP------ELA-K-KYKVYALDLLGFGW 125 (354)
T ss_pred cccCCCceEEEECCEEEEEEE-cCCCCeEEEECCCCCCHHHHHHHHH------HHh-c-CCEEEEECCCCCCC
Confidence 444444455555676665333 3457899999999999988864322 254 3 79999999999875
No 23
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=96.78 E-value=0.0037 Score=54.26 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=51.5
Q ss_pred HHHHHHcCCcceEEEEecCCCcEEEEE-EeCCC---CCeEEEecCccccc-ccceecCCCCCccccccCCCCCeEEEcCC
Q psy13664 58 MDIISSQGFPVERHFIQTEDGYILALH-RIPSQ---GVPVLLMHGFAGAS-DMWVFRNDTTTDLLPVPDVSSYKWELGGA 132 (139)
Q Consensus 58 ~~~i~~~GY~~E~h~V~T~DGyiL~L~-RIp~~---k~PVlL~HGll~ss-~~wv~~g~~~sla~~Lad~~GyDVWL~n~ 132 (139)
.+-++..++++|+..+.++||..|.-+ ..|.. +|.|++.||+.+.. +.|.. .+-.|++. ||.|...|.
T Consensus 158 ~~a~~~~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~------~~~~La~~-Gy~vl~~D~ 230 (414)
T PRK05077 158 EEAAKRLPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRL------FRDYLAPR-GIAMLTIDM 230 (414)
T ss_pred HHHHhhcCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHH------HHHHHHhC-CCEEEEECC
Confidence 455667899999999999999766644 45632 45566666655543 34422 34467888 999999999
Q ss_pred CCCCC
Q psy13664 133 QSNHP 137 (139)
Q Consensus 133 RG~~~ 137 (139)
||.+.
T Consensus 231 pG~G~ 235 (414)
T PRK05077 231 PSVGF 235 (414)
T ss_pred CCCCC
Confidence 99764
No 24
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.77 E-value=0.0017 Score=51.81 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=43.0
Q ss_pred eEEEEecCCCcEEEEEEeCCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 69 ERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RIp~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
|.+.+ |-||..+...... +++||||+||+.+++..|-. ++-.|+++ + .|+..|.||.+.
T Consensus 8 ~~~~~-~~~g~~i~y~~~G-~g~~vvllHG~~~~~~~w~~------~~~~L~~~-~-~via~D~~G~G~ 66 (295)
T PRK03592 8 EMRRV-EVLGSRMAYIETG-EGDPIVFLHGNPTSSYLWRN------IIPHLAGL-G-RCLAPDLIGMGA 66 (295)
T ss_pred cceEE-EECCEEEEEEEeC-CCCEEEEECCCCCCHHHHHH------HHHHHhhC-C-EEEEEcCCCCCC
Confidence 33333 4488777644433 57899999999999999853 34457776 5 999999999874
No 25
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.73 E-value=0.0018 Score=55.99 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=46.8
Q ss_pred ceEEEEecCCCcEEEEEEe-CC-C--CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 68 VERHFIQTEDGYILALHRI-PS-Q--GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 68 ~E~h~V~T~DGyiL~L~RI-p~-~--k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.++-.+...||..|..... |. + +++|+++||+.+++..|. .++-.|+++ ||.|+..|+||++.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~------~~a~~L~~~-Gy~V~~~D~rGhG~ 176 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYL------HFAKQLTSC-GFGVYAMDWIGHGG 176 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHH------HHHHHHHHC-CCEEEEeCCCCCCC
Confidence 4555666778887764444 31 1 678999999998877653 256678888 99999999999864
No 26
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.65 E-value=0.0034 Score=49.76 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=40.9
Q ss_pred EecCCCcEEEEEEeCC--CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 73 IQTEDGYILALHRIPS--QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 73 V~T~DGyiL~L~RIp~--~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
..+-||..+....... +++||+|.||+.+++..|-. +.-.|+ + +|.|+..|.||++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~------~~~~L~-~-~~~vi~~Dl~G~G~ 64 (276)
T TIGR02240 6 TIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFP------FIEALD-P-DLEVIAFDVPGVGG 64 (276)
T ss_pred EeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHH------HHHHhc-c-CceEEEECCCCCCC
Confidence 3444777776655432 25899999999999998842 223454 3 79999999999874
No 27
>PRK06489 hypothetical protein; Provisional
Probab=96.59 E-value=0.0045 Score=51.74 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCeEEEecCcccccccceecCCCCCc---cccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTD---LLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sl---a~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+|||+|+||+.+++..|..+.-...+ .-.+..+ +|.|...|+||++.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~Via~Dl~GhG~ 118 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDAS-KYFIILPDGIGHGK 118 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCccccc-CCEEEEeCCCCCCC
Confidence 68999999999999888632111111 0012234 89999999999874
No 28
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.59 E-value=0.0024 Score=49.20 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEecCCCcEEEEEEeCCC-CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 70 RHFIQTEDGYILALHRIPSQ-GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 70 ~h~V~T~DGyiL~L~RIp~~-k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.++.++-+|..+.....+.+ +++|+++||+.+++..|-. +.-.|+ + +|.|...|.||++.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~------~~~~l~-~-~~~vi~~D~~G~G~ 67 (278)
T TIGR03056 7 CSRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRD------LMPPLA-R-SFRVVAPDLPGHGF 67 (278)
T ss_pred ccceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHH------HHHHHh-h-CcEEEeecCCCCCC
Confidence 45556668888876665433 7899999999999888853 223354 3 79999999999874
No 29
>PRK07868 acyl-CoA synthetase; Validated
Probab=96.50 E-value=0.0031 Score=60.08 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=42.9
Q ss_pred EEEEEEeCC---------CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 80 ILALHRIPS---------QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 80 iL~L~RIp~---------~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
.+.|+|+.. .++||||+||+..++..|-.. +.+|+.-+|+++ ||+||+.|++.
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~~d~~-~~~s~v~~L~~~-g~~v~~~d~G~ 109 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADMWDVT-RDDGAVGILHRA-GLDPWVIDFGS 109 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCCCccceecC-CcccHHHHHHHC-CCEEEEEcCCC
Confidence 346677732 258999999999999999875 468888889898 99999999853
No 30
>PRK10673 acyl-CoA esterase; Provisional
Probab=96.40 E-value=0.0026 Score=48.96 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+|||+++||+.+++..|-. ++-.|+ + +|.|...|.||++.
T Consensus 16 ~~~iv~lhG~~~~~~~~~~------~~~~l~-~-~~~vi~~D~~G~G~ 55 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGV------LARDLV-N-DHDIIQVDMRNHGL 55 (255)
T ss_pred CCCEEEECCCCCchhHHHH------HHHHHh-h-CCeEEEECCCCCCC
Confidence 7999999999999988743 333454 3 89999999999864
No 31
>COG1647 Esterase/lipase [General function prediction only]
Probab=96.25 E-value=0.0014 Score=54.33 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
+..|||+||+.++.... +-|+-+|.++ ||+|...+++||+-+
T Consensus 15 ~~AVLllHGFTGt~~Dv------r~Lgr~L~e~-GyTv~aP~ypGHG~~ 56 (243)
T COG1647 15 NRAVLLLHGFTGTPRDV------RMLGRYLNEN-GYTVYAPRYPGHGTL 56 (243)
T ss_pred CEEEEEEeccCCCcHHH------HHHHHHHHHC-CceEecCCCCCCCCC
Confidence 68899999999998862 4577889998 999999999999743
No 32
>PRK10566 esterase; Provisional
Probab=96.24 E-value=0.0042 Score=48.21 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|.|++.||..++...|. .++-.|+++ ||.|...|.||++
T Consensus 27 ~p~vv~~HG~~~~~~~~~------~~~~~l~~~-G~~v~~~d~~g~G 66 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYS------YFAVALAQA-GFRVIMPDAPMHG 66 (249)
T ss_pred CCEEEEeCCCCcccchHH------HHHHHHHhC-CCEEEEecCCccc
Confidence 478999999988776543 256678888 9999999999874
No 33
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.20 E-value=0.0068 Score=49.03 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.+.|+.+...+++ +|..+.... .++++||+|+||+.+++..|-. +.-.|+ + +|.|...|+||.+.
T Consensus 9 ~~~~~~~~~~~~~-~~~~i~y~~-~G~~~~iv~lHG~~~~~~~~~~------~~~~l~-~-~~~vi~~D~~G~G~ 73 (286)
T PRK03204 9 PQLYPFESRWFDS-SRGRIHYID-EGTGPPILLCHGNPTWSFLYRD------IIVALR-D-RFRCVAPDYLGFGL 73 (286)
T ss_pred CccccccceEEEc-CCcEEEEEE-CCCCCEEEEECCCCccHHHHHH------HHHHHh-C-CcEEEEECCCCCCC
Confidence 3577778888877 555554333 3347899999999877767642 223354 3 79999999999863
No 34
>PRK13604 luxD acyl transferase; Provisional
Probab=96.15 E-value=0.0058 Score=52.09 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=51.4
Q ss_pred CcceEEEEecCCCcEEEEEEeCCC------CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCC
Q psy13664 66 FPVERHFIQTEDGYILALHRIPSQ------GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 66 Y~~E~h~V~T~DGyiL~L~RIp~~------k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~ 135 (139)
+..+.|.+.+.||..|.-+.++++ ++.|++.||+..+... -..+|-+|+++ ||-|...|.||+
T Consensus 7 ~~~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~------~~~~A~~La~~-G~~vLrfD~rg~ 75 (307)
T PRK13604 7 FKTIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDH------FAGLAEYLSSN-GFHVIRYDSLHH 75 (307)
T ss_pred ccchhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHH------HHHHHHHHHHC-CCEEEEecCCCC
Confidence 455789999999999997777542 4778999999997643 24578899998 999999999875
No 35
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.10 E-value=0.0087 Score=51.94 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCcceEEEEecCCCcEEEEEEeCCC----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 65 GFPVERHFIQTEDGYILALHRIPSQ----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 65 GY~~E~h~V~T~DGyiL~L~RIp~~----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
-.......+.|.||..+++...-.+ +|-|++.|||-+++.+=+. .+|+-.+.++ ||.|-++|+||..
T Consensus 46 ~~~~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y~----r~L~~~~~~r-g~~~Vv~~~Rgcs 116 (345)
T COG0429 46 KVAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYA----RGLMRALSRR-GWLVVVFHFRGCS 116 (345)
T ss_pred ccccceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcCHHH----HHHHHHHHhc-CCeEEEEeccccc
Confidence 3333566899999999999888533 6789999999999986333 4567778888 9999999999753
No 36
>PRK10115 protease 2; Provisional
Probab=95.97 E-value=0.013 Score=54.34 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=51.8
Q ss_pred HcCCcceEEEEecCCCcEEEEEEe--CC----C-CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRI--PS----Q-GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RI--p~----~-k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~ 135 (139)
...|.+|+..+++.||..+.+.-+ +. + +|.+|+.||-...+...-... ....|+++ ||-|-+.|.||+
T Consensus 411 ~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~----~~~~l~~r-G~~v~~~n~RGs 485 (686)
T PRK10115 411 AANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSF----SRLSLLDR-GFVYAIVHVRGG 485 (686)
T ss_pred ccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccH----HHHHHHHC-CcEEEEEEcCCC
Confidence 347899999999999999886444 21 1 577789999777665433221 12346788 999999999999
Q ss_pred CCC
Q psy13664 136 HPN 138 (139)
Q Consensus 136 ~~~ 138 (139)
..+
T Consensus 486 ~g~ 488 (686)
T PRK10115 486 GEL 488 (686)
T ss_pred Ccc
Confidence 865
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=95.87 E-value=0.0059 Score=49.45 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=33.5
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|+|+|+||+..++..|-. ++..|+++ ||.|...|+||++
T Consensus 18 ~p~vvliHG~~~~~~~w~~------~~~~L~~~-g~~vi~~dl~g~G 57 (273)
T PLN02211 18 PPHFVLIHGISGGSWCWYK------IRCLMENS-GYKVTCIDLKSAG 57 (273)
T ss_pred CCeEEEECCCCCCcCcHHH------HHHHHHhC-CCEEEEecccCCC
Confidence 7889999999999988743 34457777 9999999999986
No 38
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=95.82 E-value=0.011 Score=51.22 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=45.1
Q ss_pred CCcceEEEEecCCCcEEEEEEeCC-CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 65 GFPVERHFIQTEDGYILALHRIPS-QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 65 GY~~E~h~V~T~DGyiL~L~RIp~-~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
|.+--.+.-.+.||+.+....-+. +++||+|+||+.+++..|-.. +-.|+ + +|.|+..|+||++
T Consensus 101 ~~~~~~~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~~------~~~L~-~-~~~Via~DlpG~G 165 (383)
T PLN03084 101 GLKMGAQSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRKV------LPVLS-K-NYHAIAFDWLGFG 165 (383)
T ss_pred cccccceeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHHH------HHHHh-c-CCEEEEECCCCCC
Confidence 444444445567888775443332 278999999999999988632 33465 3 8999999999986
No 39
>PRK10349 carboxylesterase BioH; Provisional
Probab=95.55 E-value=0.0062 Score=47.45 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=30.9
Q ss_pred CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 91 VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 91 ~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+||+|+||+.+++..|-. ..-.|+ + .|.|...|.||++.
T Consensus 14 ~~ivllHG~~~~~~~w~~------~~~~L~-~-~~~vi~~Dl~G~G~ 52 (256)
T PRK10349 14 VHLVLLHGWGLNAEVWRC------IDEELS-S-HFTLHLVDLPGFGR 52 (256)
T ss_pred CeEEEECCCCCChhHHHH------HHHHHh-c-CCEEEEecCCCCCC
Confidence 469999999999999942 333464 3 79999999999863
No 40
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=95.42 E-value=0.0084 Score=56.87 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=46.7
Q ss_pred EEecCCCcEEEEEEeCCC----------CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 72 FIQTEDGYILALHRIPSQ----------GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 72 ~V~T~DGyiL~L~RIp~~----------k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
.+.+.||+.+...|...+ .|+|+++||+.++...|.. ++-.|+++ ||.|+..|+||++..
T Consensus 421 ~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~------lA~~La~~-Gy~VIaiDlpGHG~S 490 (792)
T TIGR03502 421 LLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALA------FAGTLAAA-GVATIAIDHPLHGAR 490 (792)
T ss_pred EEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHH------HHHHHHhC-CcEEEEeCCCCCCcc
Confidence 677788988776663211 4589999999999998853 45568887 999999999998753
No 41
>KOG1838|consensus
Probab=95.41 E-value=0.02 Score=50.70 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=52.5
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCC----------CCeEEEecCccccccc-ceecCCCCCccccccCCCCCeEEEcC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQ----------GVPVLLMHGFAGASDM-WVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~----------k~PVlL~HGll~ss~~-wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
.-....+.--++|+||..+++=+.-.. +|-|+++||+.++|.. ++ .+++..+.+. ||-|-..|
T Consensus 88 ~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YV-----r~lv~~a~~~-G~r~VVfN 161 (409)
T KOG1838|consen 88 KPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYV-----RHLVHEAQRK-GYRVVVFN 161 (409)
T ss_pred CCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHH-----HHHHHHHHhC-CcEEEEEC
Confidence 334445777799999999999888322 5889999999988874 43 4677888887 99999999
Q ss_pred CCC
Q psy13664 132 AQS 134 (139)
Q Consensus 132 ~RG 134 (139)
.||
T Consensus 162 ~RG 164 (409)
T KOG1838|consen 162 HRG 164 (409)
T ss_pred CCC
Confidence 999
No 42
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=95.18 E-value=0.028 Score=50.37 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
++||+|+||+.+++..|-..-- ..++- ++.+ ||.|+..|+||++.
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~-~~L~~-~~~~-~yrVia~Dl~G~G~ 245 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLF-PNFSD-AAKS-TYRLFAVDLLGFGR 245 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHH-HHHHH-HhhC-CCEEEEECCCCCCC
Confidence 6899999999999998863100 00111 2245 99999999999763
No 43
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=95.17 E-value=0.035 Score=44.87 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=37.6
Q ss_pred EEecCCCcEEEEEEeCCC--CCeEEEecCccccc-ccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 72 FIQTEDGYILALHRIPSQ--GVPVLLMHGFAGAS-DMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 72 ~V~T~DGyiL~L~RIp~~--k~PVlL~HGll~ss-~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
.+.+.+.-+......|.+ +++|+++||-.... ..|-. ...++-.|+++ ||.|+..|+||++..
T Consensus 6 ~~~~~~~~l~g~~~~p~~~~~~~vv~i~gg~~~~~g~~~~---~~~la~~l~~~-G~~v~~~Dl~G~G~S 71 (274)
T TIGR03100 6 TFSCEGETLVGVLHIPGASHTTGVLIVVGGPQYRVGSHRQ---FVLLARRLAEA-GFPVLRFDYRGMGDS 71 (274)
T ss_pred EEEcCCcEEEEEEEcCCCCCCCeEEEEeCCccccCCchhH---HHHHHHHHHHC-CCEEEEeCCCCCCCC
Confidence 334444444445555654 56777667643222 22211 13467778888 999999999998753
No 44
>KOG4178|consensus
Probab=95.00 E-value=0.036 Score=47.78 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=47.1
Q ss_pred eEEEEecCCCcEEEEEEeCC---CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 69 ERHFIQTEDGYILALHRIPS---QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RIp~---~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
-+|+..|-+| +.+|-.-+ .+|.|||.||+=.+..+|-.-.+ .||+. ||-|-..|+||.+.
T Consensus 22 ~~hk~~~~~g--I~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~------~la~~-~~rviA~DlrGyG~ 84 (322)
T KOG4178|consen 22 ISHKFVTYKG--IRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIP------GLASR-GYRVIAPDLRGYGF 84 (322)
T ss_pred cceeeEEEcc--EEEEEEeecCCCCCEEEEEccCCccchhhhhhhh------hhhhc-ceEEEecCCCCCCC
Confidence 4788888888 55555432 28999999999999999987554 37888 99999999999764
No 45
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=94.88 E-value=0.011 Score=44.30 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|+|++.||+.+++..|... ...|+ + ||.|+..|.||++
T Consensus 13 ~~~iv~lhG~~~~~~~~~~~------~~~l~-~-~~~vi~~D~~G~G 51 (257)
T TIGR03611 13 APVVVLSSGLGGSGSYWAPQ------LDVLT-Q-RFHVVTYDHRGTG 51 (257)
T ss_pred CCEEEEEcCCCcchhHHHHH------HHHHH-h-ccEEEEEcCCCCC
Confidence 78899999999999888642 22343 4 8999999999975
No 46
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=94.48 E-value=0.063 Score=47.93 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=41.7
Q ss_pred EecCCCcEEEEEEe-CCC---CCeEEEecCccccccc-ceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 73 IQTEDGYILALHRI-PSQ---GVPVLLMHGFAGASDM-WVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 73 V~T~DGyiL~L~RI-p~~---k~PVlL~HGll~ss~~-wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
|++.||..|...-. |.+ .|+|++.||...++.. +. .....+-.|+++ ||-|...|.||+..
T Consensus 1 i~~~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~---~~~~~~~~l~~~-Gy~vv~~D~RG~g~ 66 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWG---LDKTEPAWFVAQ-GYAVVIQDTRGRGA 66 (550)
T ss_pred CcCCCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccc---cccccHHHHHhC-CcEEEEEecccccc
Confidence 46789998874333 432 5778899999876541 11 122334567788 99999999999864
No 47
>KOG1455|consensus
Probab=94.13 E-value=0.079 Score=45.57 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHHcCCcceEEEEecCCCcEE-EEEEeCCC----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcC
Q psy13664 57 TMDIISSQGFPVERHFIQTEDGYIL-ALHRIPSQ----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 57 ~~~~i~~~GY~~E~h~V~T~DGyiL-~L~RIp~~----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
..++-...+-..+.-.+++.+|-.| +-.+.|.. +.-|++.||+...+...+ ++.|-.||.. ||-|+-.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~-----~~~a~~l~~~-g~~v~a~D 89 (313)
T KOG1455|consen 16 EEEYYGDGGVTYSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRY-----QSTAKRLAKS-GFAVYAID 89 (313)
T ss_pred hhhhcCCCccceeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhH-----HHHHHHHHhC-CCeEEEee
Confidence 3444445555567778899999555 45555522 566999999887764432 4578889998 99999999
Q ss_pred CCCCCC
Q psy13664 132 AQSNHP 137 (139)
Q Consensus 132 ~RG~~~ 137 (139)
++|++-
T Consensus 90 ~~GhG~ 95 (313)
T KOG1455|consen 90 YEGHGR 95 (313)
T ss_pred ccCCCc
Confidence 999874
No 48
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=94.06 E-value=0.034 Score=40.99 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=30.8
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+|++++.||+.+++..|-. ++-.| .+ ||.|+..|.||++.
T Consensus 13 ~~~li~~hg~~~~~~~~~~------~~~~l-~~-~~~v~~~d~~G~G~ 52 (251)
T TIGR02427 13 APVLVFINSLGTDLRMWDP------VLPAL-TP-DFRVLRYDKRGHGL 52 (251)
T ss_pred CCeEEEEcCcccchhhHHH------HHHHh-hc-ccEEEEecCCCCCC
Confidence 6778999999999888742 22235 34 99999999999763
No 49
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=94.02 E-value=0.12 Score=44.47 Aligned_cols=40 Identities=5% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
+|||+|+||+..+...|... .-.|+ + +|.|+..|+||++.
T Consensus 105 ~p~vvllHG~~~~~~~~~~~------~~~L~-~-~~~vi~~D~rG~G~ 144 (402)
T PLN02894 105 APTLVMVHGYGASQGFFFRN------FDALA-S-RFRVIAIDQLGWGG 144 (402)
T ss_pred CCEEEEECCCCcchhHHHHH------HHHHH-h-CCEEEEECCCCCCC
Confidence 78999999999988888643 22354 3 79999999999864
No 50
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=93.81 E-value=0.053 Score=49.77 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=41.5
Q ss_pred EEEEEEeCCC-----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCC
Q psy13664 80 ILALHRIPSQ-----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 80 iL~L~RIp~~-----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~ 135 (139)
.++|.++... +.|+|+++.+....-.|-.. |++|+.-+|.++ ||||+|.+||.-
T Consensus 200 l~eLiqY~P~te~v~~~PLLIVPp~INK~YIlDL~-P~~SlVr~lv~q-G~~VflIsW~nP 258 (560)
T TIGR01839 200 VLELIQYKPITEQQHARPLLVVPPQINKFYIFDLS-PEKSFVQYCLKN-QLQVFIISWRNP 258 (560)
T ss_pred ceEEEEeCCCCCCcCCCcEEEechhhhhhheeecC-CcchHHHHHHHc-CCeEEEEeCCCC
Confidence 4556666432 78999999998555555554 679999999998 999999999963
No 51
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.69 E-value=0.054 Score=38.80 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
++++++.||+..+...|.... . ..... .. -|+|++.|.||++..
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~--~-~~~~~-~~-~~~~~~~d~~g~g~s 64 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVF--K-VLPAL-AA-RYRVIAPDLRGHGRS 64 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHH--H-Hhhcc-cc-ceEEEEecccCCCCC
Confidence 568999999999999988711 1 11111 11 199999999988753
No 52
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=93.62 E-value=0.15 Score=42.42 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCeEEEecCccccccc----------ceecCCCCCccccccCCCCCeEEEcCCCCC
Q psy13664 90 GVPVLLMHGFAGASDM----------WVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 90 k~PVlL~HGll~ss~~----------wv~~g~~~sla~~Lad~~GyDVWL~n~RG~ 135 (139)
+++|+|.||+.+++.. |... --..+-.|..+ +|-|...|.||+
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~--~~~~~~~l~~~-~~~vi~~D~~G~ 83 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDD--LIGPGRAIDTD-RYFVVCSNVLGG 83 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhh--ccCCCCCcCCC-ceEEEEecCCCC
Confidence 6789999999998742 2111 01112234344 999999999993
No 53
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=93.22 E-value=0.042 Score=45.10 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=35.7
Q ss_pred CCCcEEEEEEeCCCCCeEEEecCccccc-ccceecCCCCCcc-ccccCCCCCeEEEcCCCCC
Q psy13664 76 EDGYILALHRIPSQGVPVLLMHGFAGAS-DMWVFRNDTTTDL-LPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 76 ~DGyiL~L~RIp~~k~PVlL~HGll~ss-~~wv~~g~~~sla-~~Lad~~GyDVWL~n~RG~ 135 (139)
.|+..+.-..+..++|+|+++||+.++. ..|... ++ .+|... +|.|...|+|+.
T Consensus 22 ~~~~~~~~~~f~~~~p~vilIHG~~~~~~~~~~~~-----l~~~ll~~~-~~nVi~vD~~~~ 77 (275)
T cd00707 22 DDPSSLKNSNFNPSRPTRFIIHGWTSSGEESWISD-----LRKAYLSRG-DYNVIVVDWGRG 77 (275)
T ss_pred CChhhhhhcCCCCCCCcEEEEcCCCCCCCCcHHHH-----HHHHHHhcC-CCEEEEEECccc
Confidence 3444443333334489999999999988 566532 22 244444 899999999975
No 54
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=93.15 E-value=0.052 Score=47.93 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=47.0
Q ss_pred HHcCCcceEEEEecCCCcEEEEEEe-CCC----CCeEEEecCcccccccceec------------CCCCCccccccCCCC
Q psy13664 62 SSQGFPVERHFIQTEDGYILALHRI-PSQ----GVPVLLMHGFAGASDMWVFR------------NDTTTDLLPVPDVSS 124 (139)
Q Consensus 62 ~~~GY~~E~h~V~T~DGyiL~L~RI-p~~----k~PVlL~HGll~ss~~wv~~------------g~~~sla~~Lad~~G 124 (139)
++.||..|...+.|.++.....+=+ |.+ -|.||++||=....+.-+.. .++...|..||.+ |
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~-G 160 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGAKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR-G 160 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT--S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT-T
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCCCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC-C
Confidence 5789999999999999998887744 644 47799999965543222211 1135568899999 9
Q ss_pred CeEEEcCCCCCCC
Q psy13664 125 YKWELGGAQSNHP 137 (139)
Q Consensus 125 yDVWL~n~RG~~~ 137 (139)
|-|-..|.+|-++
T Consensus 161 YVvla~D~~g~GE 173 (390)
T PF12715_consen 161 YVVLAPDALGFGE 173 (390)
T ss_dssp SEEEEE--TTSGG
T ss_pred CEEEEEccccccc
Confidence 9999999987653
No 55
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=93.07 E-value=0.11 Score=42.49 Aligned_cols=54 Identities=22% Similarity=0.457 Sum_probs=37.5
Q ss_pred CCcEEEEEEeCC-CCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 77 DGYILALHRIPS-QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 77 DGyiL~L~RIp~-~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
+|..+...+... +++||+|+||+.++...|.... -.|+ + +|.|...|.||++..
T Consensus 117 ~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~------~~l~-~-~~~v~~~d~~g~G~s 171 (371)
T PRK14875 117 GGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLFNH------AALA-A-GRPVIALDLPGHGAS 171 (371)
T ss_pred cCcEEEEecccCCCCCeEEEECCCCCccchHHHHH------HHHh-c-CCEEEEEcCCCCCCC
Confidence 344443333332 2789999999999999887542 2354 3 699999999998753
No 56
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=92.90 E-value=0.043 Score=46.10 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
++||+|+||+.+++..|-..- -.|+ + +|.|...|+||++.
T Consensus 88 gp~lvllHG~~~~~~~w~~~~------~~L~-~-~~~via~Dl~G~G~ 127 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRNI------GVLA-K-NYTVYAIDLLGFGA 127 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHH------HHHh-c-CCEEEEECCCCCCC
Confidence 489999999999999986432 2354 3 89999999999873
No 57
>PRK07581 hypothetical protein; Validated
Probab=92.82 E-value=0.36 Score=39.57 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=28.2
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.++|||.||+..++..|-.. -...-.|+.+ +|-|...|.||++.
T Consensus 41 ~~~vll~~~~~~~~~~~~~~---~~~~~~l~~~-~~~vi~~D~~G~G~ 84 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWL---IGPGRALDPE-KYFIIIPNMFGNGL 84 (339)
T ss_pred CCEEEEeCCCCCCcccchhh---ccCCCccCcC-ceEEEEecCCCCCC
Confidence 35677888887776654210 0001135455 89999999999874
No 58
>KOG1454|consensus
Probab=92.81 E-value=0.3 Score=41.38 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~ 135 (139)
++||+++||+++|+..|-.+-+. |+.+.|+=||-.|.=|.
T Consensus 58 ~~pvlllHGF~~~~~~w~~~~~~------L~~~~~~~v~aiDl~G~ 97 (326)
T KOG1454|consen 58 KPPVLLLHGFGASSFSWRRVVPL------LSKAKGLRVLAIDLPGH 97 (326)
T ss_pred CCcEEEeccccCCcccHhhhccc------cccccceEEEEEecCCC
Confidence 89999999999999999876543 55554788888888773
No 59
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=92.66 E-value=0.16 Score=41.04 Aligned_cols=43 Identities=2% Similarity=0.017 Sum_probs=31.2
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCC--CCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGA--QSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~--RG~~ 136 (139)
.|+|+|.||..++.+.|.... .+..++++. ||-|.+.|. ||++
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~---~~~~la~~~-g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKA---GAQRFAAEH-GLALVAPDTSPRGTG 86 (275)
T ss_pred CCEEEEccCCCCCccHHHhhh---HHHHHHhhc-CcEEEEeCCCCCcCC
Confidence 577899999999999996532 122334444 999999997 6654
No 60
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=91.89 E-value=0.37 Score=49.02 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=48.7
Q ss_pred CCCHHHHHH-HcCCcceEEEEecC-CCcEEEE--EEeCC--CCCeEEEecCcccccccceecCCCCCccccccCCCCCeE
Q psy13664 54 IVPTMDIIS-SQGFPVERHFIQTE-DGYILAL--HRIPS--QGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKW 127 (139)
Q Consensus 54 ~~~~~~~i~-~~GY~~E~h~V~T~-DGyiL~L--~RIp~--~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDV 127 (139)
.++..++++ ..|-....+.+..+ ||....+ +.... .++||+|+||+++++..|... .-.|++ +|.|
T Consensus 1329 ~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~------~~~L~~--~~rV 1400 (1655)
T PLN02980 1329 QINNDVIVRTFKEEQVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWIPI------MKAISG--SARC 1400 (1655)
T ss_pred ccCHHHHHHHhccCCCceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHHHHHH------HHHHhC--CCEE
Confidence 344444443 34666677766554 5533222 22222 268999999999999998532 234543 7999
Q ss_pred EEcCCCCCCC
Q psy13664 128 ELGGAQSNHP 137 (139)
Q Consensus 128 WL~n~RG~~~ 137 (139)
...|.||++.
T Consensus 1401 i~~Dl~G~G~ 1410 (1655)
T PLN02980 1401 ISIDLPGHGG 1410 (1655)
T ss_pred EEEcCCCCCC
Confidence 9999999864
No 61
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.59 E-value=0.56 Score=42.83 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=53.5
Q ss_pred HHHHHcCCcceEEEEecCCCcEEEEEEe-CCC----C--CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcC
Q psy13664 59 DIISSQGFPVERHFIQTEDGYILALHRI-PSQ----G--VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 59 ~~i~~~GY~~E~h~V~T~DGyiL~L~RI-p~~----k--~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
.+.+...++.|...+.+.||-.+.-+-+ |.+ | |.|++.||==.....|.. .-..-.||.+ ||-|-..|
T Consensus 356 ~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~----~~~~q~~~~~-G~~V~~~n 430 (620)
T COG1506 356 GLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSF----NPEIQVLASA-GYAVLAPN 430 (620)
T ss_pred cccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCcccccccc----chhhHHHhcC-CeEEEEeC
Confidence 3445778889999999999987775544 433 2 568899996444444322 2234467888 99999999
Q ss_pred CCCCCCC
Q psy13664 132 AQSNHPN 138 (139)
Q Consensus 132 ~RG~~~~ 138 (139)
.||+.-|
T Consensus 431 ~RGS~Gy 437 (620)
T COG1506 431 YRGSTGY 437 (620)
T ss_pred CCCCCcc
Confidence 9998764
No 62
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=91.54 E-value=0.38 Score=40.76 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=29.2
Q ss_pred CCeEEEecCcccccccceec-------C-CCCCc---cccccCCCCCeEEEcCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFR-------N-DTTTD---LLPVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~-------g-~~~sl---a~~Lad~~GyDVWL~n~RG~ 135 (139)
+|+|+|+||+.+++..|-.. | ...-+ ..+++ + +|-|...|.||+
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~-~~~vi~~Dl~G~ 102 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-D-RYFVICSNVLGG 102 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-c-ceEEEeccCCCC
Confidence 68899999999999865321 0 00011 12233 3 899999999983
No 63
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=91.51 E-value=0.59 Score=38.71 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=31.3
Q ss_pred CCcEEEEEEeCCCCCeEEEecCccccccc-----------ceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 77 DGYILALHRIPSQGVPVLLMHGFAGASDM-----------WVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 77 DGyiL~L~RIp~~k~PVlL~HGll~ss~~-----------wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|..|.......+++|++|+||.++++.. |-.+--.. .-.|..+ +|-|...|.||++
T Consensus 44 ~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~--~~~L~~~-~~~Vi~~Dl~G~g 111 (343)
T PRK08775 44 EDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGS--GRALDPA-RFRLLAFDFIGAD 111 (343)
T ss_pred CCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCC--CCccCcc-ccEEEEEeCCCCC
Confidence 77777644333235566655555555553 22211100 0124334 8999999999985
No 64
>PRK10162 acetyl esterase; Provisional
Probab=91.08 E-value=0.46 Score=39.43 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=41.2
Q ss_pred cceEEEEecCCCcEEEEEEe-CCC--CCeEEEecCc---ccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 67 PVERHFIQTEDGYILALHRI-PSQ--GVPVLLMHGF---AGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 67 ~~E~h~V~T~DGyiL~L~RI-p~~--k~PVlL~HGl---l~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.+|+..|.+.+|- +.+..+ |.+ +|+|++.||= .++.+.|. .+.-.||...|+-|...|+|..+.
T Consensus 56 ~~~~~~i~~~~g~-i~~~~y~P~~~~~p~vv~~HGGg~~~g~~~~~~------~~~~~la~~~g~~Vv~vdYrlape 125 (318)
T PRK10162 56 ATRAYMVPTPYGQ-VETRLYYPQPDSQATLFYLHGGGFILGNLDTHD------RIMRLLASYSGCTVIGIDYTLSPE 125 (318)
T ss_pred eEEEEEEecCCCc-eEEEEECCCCCCCCEEEEEeCCcccCCCchhhh------HHHHHHHHHcCCEEEEecCCCCCC
Confidence 3678888888884 554443 322 5778899992 23333321 234456653499999999998764
No 65
>KOG2382|consensus
Probab=90.43 E-value=0.14 Score=44.10 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=32.6
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCC--CCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQ--SNHP 137 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~R--G~~~ 137 (139)
.||++++|||++|..+|-.-+. . |+..-|=||++.|.| |..|
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~sv~k--~----Ls~~l~~~v~~vd~RnHG~Sp 95 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRSVAK--N----LSRKLGRDVYAVDVRNHGSSP 95 (315)
T ss_pred CCceEEecccccCCCCHHHHHH--H----hcccccCceEEEecccCCCCc
Confidence 7999999999999999987543 3 444336699999999 5444
No 66
>PLN00021 chlorophyllase
Probab=89.79 E-value=0.76 Score=38.72 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=41.4
Q ss_pred CcceEEEEecC----CCcEEEEEEeCCC--CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 66 FPVERHFIQTE----DGYILALHRIPSQ--GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 66 Y~~E~h~V~T~----DGyiL~L~RIp~~--k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
|+++.-.+... -+..+.+++=..+ .|+|++.||++.+...|- .++-.||+. ||.|+..|.+|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~p~~v~~P~~~g~~PvVv~lHG~~~~~~~y~------~l~~~Las~-G~~VvapD~~g~~ 91 (313)
T PLN00021 22 FPVELITVDESSRPSPPKPLLVATPSEAGTYPVLLFLHGYLLYNSFYS------QLLQHIASH-GFIVVAPQLYTLA 91 (313)
T ss_pred ceeEEEEecCCCcCCCCceEEEEeCCCCCCCCEEEEECCCCCCcccHH------HHHHHHHhC-CCEEEEecCCCcC
Confidence 55555554442 3444444442222 588899999988766543 345568888 9999999988754
No 67
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=89.00 E-value=0.26 Score=38.06 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|.|+++||...++..+... ..++.++.+. ||-|...|.||+.
T Consensus 13 ~P~vv~lHG~~~~~~~~~~~---~~~~~~a~~~-g~~Vv~Pd~~g~~ 55 (212)
T TIGR01840 13 RALVLALHGCGQTASAYVID---WGWKAAADRY-GFVLVAPEQTSYN 55 (212)
T ss_pred CCEEEEeCCCCCCHHHHhhh---cChHHHHHhC-CeEEEecCCcCcc
Confidence 68899999999888877532 2244444344 9999999999863
No 68
>PRK11071 esterase YqiA; Provisional
Probab=88.90 E-value=0.15 Score=39.48 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 91 VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 91 ~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
|+|+++||+.+|+.+|-...-. ++.-....+|.|+..|+||++
T Consensus 2 p~illlHGf~ss~~~~~~~~~~---~~l~~~~~~~~v~~~dl~g~~ 44 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLK---NWLAQHHPDIEMIVPQLPPYP 44 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHH---HHHHHhCCCCeEEeCCCCCCH
Confidence 6899999999999998742100 111011127999999999874
No 69
>KOG4409|consensus
Probab=85.92 E-value=1.4 Score=38.69 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHcCCcceEEEEecCCCcEEEEEEeC-----CCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 60 IISSQGFPVERHFIQTEDGYILALHRIP-----SQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 60 ~i~~~GY~~E~h~V~T~DGyiL~L~RIp-----~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
+++..+-+.+.-.|.+.++-. ++.+. ..+.|++|+||+.+....|+.|-+. ||+ .++|+-.|+=|
T Consensus 57 il~~~~v~~~~~~v~i~~~~~--iw~~~~~~~~~~~~plVliHGyGAg~g~f~~Nf~~------La~--~~~vyaiDllG 126 (365)
T KOG4409|consen 57 ILSSVPVPYSKKYVRIPNGIE--IWTITVSNESANKTPLVLIHGYGAGLGLFFRNFDD------LAK--IRNVYAIDLLG 126 (365)
T ss_pred hhhhcCCCcceeeeecCCCce--eEEEeecccccCCCcEEEEeccchhHHHHHHhhhh------hhh--cCceEEecccC
Confidence 445566666777777765543 44442 1289999999999999999998754 443 67888777766
Q ss_pred CC
Q psy13664 135 NH 136 (139)
Q Consensus 135 ~~ 136 (139)
.+
T Consensus 127 ~G 128 (365)
T KOG4409|consen 127 FG 128 (365)
T ss_pred CC
Confidence 54
No 70
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=84.78 E-value=0.46 Score=36.15 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
+|||+|+||+.+++..|-.
T Consensus 2 ~p~vvllHG~~~~~~~w~~ 20 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQP 20 (242)
T ss_pred CCEEEEECCCCCChHHHHH
Confidence 5789999999999998864
No 71
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=84.53 E-value=0.57 Score=42.10 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=37.7
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
++|+|++|=....--.|-.. +++|+..+|.++ |.|||+.+||+
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~-~~~s~V~~l~~~-g~~vfvIsw~n 149 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLS-PEKSLVRWLLEQ-GLDVFVISWRN 149 (445)
T ss_pred CCceEeeccccCceeEEeCC-CCccHHHHHHHc-CCceEEEeccC
Confidence 79999999888777777776 579999999999 99999999986
No 72
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=83.64 E-value=1.6 Score=37.24 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred eEEEEecCCCcEEEEEEeCCC------CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcC
Q psy13664 69 ERHFIQTEDGYILALHRIPSQ------GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RIp~~------k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
-.|.+.-+||..+.+++=+++ ++.|++..|+...++.|. .+|++|+.. ||.|.=.|
T Consensus 3 idhvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~a------gLA~YL~~N-GFhViRyD 64 (294)
T PF02273_consen 3 IDHVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFA------GLAEYLSAN-GFHVIRYD 64 (294)
T ss_dssp EEEEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGH------HHHHHHHTT-T--EEEE-
T ss_pred ccceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHH------HHHHHHhhC-CeEEEecc
Confidence 368889999999999887543 588999999999998865 589999997 99997554
No 73
>KOG4667|consensus
Probab=82.26 E-value=0.63 Score=39.03 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCCCCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 87 PSQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 87 p~~k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
.+....|+|.||+-++...=++ +.+|-.|++. ||-++=.|+||++.-
T Consensus 30 tgs~e~vvlcHGfrS~Kn~~~~----~~vA~~~e~~-gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 30 TGSTEIVVLCHGFRSHKNAIIM----KNVAKALEKE-GISAFRFDFSGNGES 76 (269)
T ss_pred cCCceEEEEeeccccccchHHH----HHHHHHHHhc-CceEEEEEecCCCCc
Confidence 3347889999999888776554 4578899988 999999999999863
No 74
>PLN02442 S-formylglutathione hydrolase
Probab=80.72 E-value=1.1 Score=36.64 Aligned_cols=40 Identities=3% Similarity=0.013 Sum_probs=30.8
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQ 133 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~R 133 (139)
.|+|++.||..++.+.|.... .+...++.. ||-|.+.|..
T Consensus 47 ~Pvv~~lHG~~~~~~~~~~~~---~~~~~~~~~-g~~Vv~pd~~ 86 (283)
T PLN02442 47 VPVLYWLSGLTCTDENFIQKS---GAQRAAAAR-GIALVAPDTS 86 (283)
T ss_pred CCEEEEecCCCcChHHHHHhh---hHHHHHhhc-CeEEEecCCC
Confidence 577889999999888887642 245566666 9999999964
No 75
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=80.25 E-value=1.1 Score=37.91 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred EEEecCCCcEEEEEEeCCC-CCe-EEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 71 HFIQTEDGYILALHRIPSQ-GVP-VLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 71 h~V~T~DGyiL~L~RIp~~-k~P-VlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
-.+...|||.|.-+|.|.. +.+ -++.-|-..-...|+ +.+|-.++.+ ||+|-++|+||..+
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fY-----RrfA~~a~~~-Gf~Vlt~dyRG~g~ 70 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFY-----RRFAAAAAKA-GFEVLTFDYRGIGQ 70 (281)
T ss_pred cccccCCCccCccccccCCCCCCCcEEecccCCcchhHh-----HHHHHHhhcc-CceEEEEecccccC
Confidence 3466679999999999866 221 333333333333333 3467778887 99999999999765
No 76
>PRK11460 putative hydrolase; Provisional
Probab=80.05 E-value=0.62 Score=36.95 Aligned_cols=38 Identities=11% Similarity=-0.178 Sum_probs=24.5
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
++.|++.||+.+|...|.. ++-.|+.+ ++++-+...||
T Consensus 16 ~~~vIlLHG~G~~~~~~~~------l~~~l~~~-~~~~~~i~~~g 53 (232)
T PRK11460 16 QQLLLLFHGVGDNPVAMGE------IGSWFAPA-FPDALVVSVGG 53 (232)
T ss_pred CcEEEEEeCCCCChHHHHH------HHHHHHHH-CCCCEEECCCC
Confidence 6789999999999988754 23334443 44444444444
No 77
>KOG4391|consensus
Probab=79.85 E-value=2.6 Score=35.64 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=54.3
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCC--CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQ--GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~--k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
.+|-|-|+..+.|.|.-.|.-|.+..+ +|.+|..||=.+|...++..-. .|+- .- +-.|.+.++||-+
T Consensus 49 ~~n~pye~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~~----~fy~-~l-~mnv~ivsYRGYG 118 (300)
T KOG4391|consen 49 EFNMPYERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIAR----VFYV-NL-KMNVLIVSYRGYG 118 (300)
T ss_pred ccCCCceEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHHH----HHHH-Hc-CceEEEEEeeccc
Confidence 678899999999999999999999754 8999999999888887665422 2222 23 7889999999864
No 78
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=79.20 E-value=1.1 Score=40.16 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred CCeEEEecCccccc--ccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGAS--DMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss--~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|+++++||+..+. +.|+..-. -+++..+. .|.|...||||..
T Consensus 41 ~ptvIlIHG~~~s~~~~~w~~~l~---~al~~~~~-d~nVI~VDw~g~g 85 (442)
T TIGR03230 41 TKTFIVIHGWTVTGMFESWVPKLV---AALYEREP-SANVIVVDWLSRA 85 (442)
T ss_pred CCeEEEECCCCcCCcchhhHHHHH---HHHHhccC-CCEEEEEECCCcC
Confidence 89999999999764 35664211 12222333 6999999999765
No 79
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=78.92 E-value=1.1 Score=32.83 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=16.4
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
++||+++||+.+++..|-.
T Consensus 4 ~~~iv~~HG~~~~~~~~~~ 22 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRC 22 (245)
T ss_pred CceEEEEcCCCCchhhHHH
Confidence 4889999999999998843
No 80
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=78.20 E-value=1.2 Score=32.40 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=16.7
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
+|+|+++||+.+++..|-.
T Consensus 1 ~~~vv~~hG~~~~~~~~~~ 19 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQA 19 (251)
T ss_pred CCEEEEEcCCCCchhhHHH
Confidence 5889999999999998865
No 81
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.92 E-value=2.6 Score=34.02 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=41.2
Q ss_pred eEEEEecCCCcEEEEEEe-CCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 69 ERHFIQTEDGYILALHRI-PSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RI-p~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
+.+.+.++| ..+.-|.. |.+ .|.|++.|++++-.. .-+..+-.||.+ ||.|...|.=+
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~~~~P~VIv~hei~Gl~~------~i~~~a~rlA~~-Gy~v~~Pdl~~ 64 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGAGGFPGVIVLHEIFGLNP------HIRDVARRLAKA-GYVVLAPDLYG 64 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcCCCCCEEEEEecccCCch------HHHHHHHHHHhC-CcEEEechhhc
Confidence 456777777 44444443 433 377899999887666 246788999998 99999988643
No 82
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=74.37 E-value=2.2 Score=23.66 Aligned_cols=14 Identities=36% Similarity=0.543 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHhcc
Q psy13664 10 SVVVIITLYLISCS 23 (139)
Q Consensus 10 ~~~~~~~~~l~~c~ 23 (139)
-|+++|.++++||+
T Consensus 9 ivVLFILLiIvG~s 22 (24)
T PF09680_consen 9 IVVLFILLIIVGAS 22 (24)
T ss_pred HHHHHHHHHHhcce
Confidence 45667777888987
No 83
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=74.11 E-value=10 Score=27.90 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.0
Q ss_pred chhhhHHHHHHHhccccceEEeecccccccccCCCCCCCccccccCCCHHHHHHHcCCcceEEEEec
Q psy13664 9 ISVVVIITLYLISCSSTDYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVERHFIQT 75 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~~~~~~~~~~~~~w~~p~~~~~~p~~~~~~~~~~~~i~~~GY~~E~h~V~T 75 (139)
|..++++++.|.|||... +... . .+ -++.+.++..|+-.|.....|=|..+-.+..
T Consensus 5 ~~~~~~~~l~lagCS~~~-----~~~g-y--~~---~~~v~qv~~GmTr~qV~~~lGtP~~~~~~~~ 60 (109)
T PRK11251 5 ILSAAAVLTMLAGCTAYD-----RNPV-Q--FV---EPVVKDVKKGMTRQQVAQIAGKPSSEVSMIH 60 (109)
T ss_pred HHHHHHHHHHHhhCccee-----cCCC-c--cc---HHHHHHcCCCCCHHHHHHHcCCCCccceeec
Confidence 445566677799999732 1111 1 11 1233444667888889999998886655533
No 84
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=70.56 E-value=1 Score=34.57 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=27.1
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
+|.|+++|++++-. .+ .+.+|-.||++ ||.|.+.|+-+..
T Consensus 14 ~~~Vvv~~d~~G~~-~~-----~~~~ad~lA~~-Gy~v~~pD~f~~~ 53 (218)
T PF01738_consen 14 RPAVVVIHDIFGLN-PN-----IRDLADRLAEE-GYVVLAPDLFGGR 53 (218)
T ss_dssp EEEEEEE-BTTBS--HH-----HHHHHHHHHHT-T-EEEEE-CCCCT
T ss_pred CCEEEEEcCCCCCc-hH-----HHHHHHHHHhc-CCCEEecccccCC
Confidence 68899999988755 11 24578889998 9999999975433
No 85
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=68.36 E-value=9.2 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=18.4
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQ 89 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~ 89 (139)
..|-..|.+..++.||-.-+.-|+..+
T Consensus 39 ~~~Isae~~~l~~sd~~~~~~s~l~N~ 65 (123)
T COG5633 39 IAGISAEKPVLSESDGQPSASSVLKNK 65 (123)
T ss_pred eccccccCCeeeeeccccceeEEEecc
Confidence 346666777777778777666666544
No 86
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=67.65 E-value=6.3 Score=32.87 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=31.7
Q ss_pred chhhhHHHHHHHhccccceEEeecccccccccCCCCCCCccccccCCCHHHHHHHcCCcceEEEEecCCCcEE
Q psy13664 9 ISVVVIITLYLISCSSTDYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYIL 81 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~~~~~~~~~~~~~w~~p~~~~~~p~~~~~~~~~~~~i~~~GY~~E~h~V~T~DGyiL 81 (139)
+..++..+++|.||....|.-++..+-. .+.+.++..|.+.|... .+||..+
T Consensus 6 ~l~~~~~~~~l~gC~~~LysgL~~~dA~-------------------~I~a~L~~~gI~y~~~~--~~~G~tI 57 (249)
T PRK15348 6 IVFLTVLTFFLTACDVDLYRSLPEDEAN-------------------QMLALLMQHHIDAEKKQ--EEDGVTL 57 (249)
T ss_pred HHHHHHHHHHHhcCChHHHcCCCHHHHH-------------------HHHHHHHHcCCCceEee--CCCCeEE
Confidence 3455667778999986444433332221 25667788888876542 6677644
No 87
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=66.46 E-value=16 Score=30.80 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHHcCCcceEEEEecCCCcEEEEEEeCCC---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEc
Q psy13664 61 ISSQGFPVERHFIQTEDGYILALHRIPSQ---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELG 130 (139)
Q Consensus 61 i~~~GY~~E~h~V~T~DGyiL~L~RIp~~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~ 130 (139)
++++--.-|...+...|.-.|.|+|=... +..|+++||...+.+. ++--..|.-.|.+. |+..+-.
T Consensus 55 l~~~lp~~e~~~L~~~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d~---p~~i~~LR~~L~~~-GW~Tlsi 123 (310)
T PF12048_consen 55 LERYLPADEVQWLQAGEERFLALWRPANSAKPQGAVIILPDWGEHPDW---PGLIAPLRRELPDH-GWATLSI 123 (310)
T ss_pred HHhhCCHhhcEEeecCCEEEEEEEecccCCCCceEEEEecCCCCCCCc---HhHHHHHHHHhhhc-CceEEEe
Confidence 55555557888899999999999996533 6789999999888773 11124566778888 8877653
No 88
>KOG2237|consensus
Probab=64.11 E-value=11 Score=35.73 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred HHHcCCcceEEEEecCCCcEEEEEEeCCC-------CCeEEEecCcccccc--cceecCCCCCccccccCCCCCeEEEcC
Q psy13664 61 ISSQGFPVERHFIQTEDGYILALHRIPSQ-------GVPVLLMHGFAGASD--MWVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 61 i~~~GY~~E~h~V~T~DGyiL~L~RIp~~-------k~PVlL~HGll~ss~--~wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
...-.|.+|++.+...||-.+-|+=+.++ +|-.|..||-.+-+- +|-.. ...|.|. |+-.=..|
T Consensus 434 ~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~s------rl~lld~-G~Vla~a~ 506 (712)
T KOG2237|consen 434 FDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRAS------RLSLLDR-GWVLAYAN 506 (712)
T ss_pred ccccceEEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccc------eeEEEec-ceEEEEEe
Confidence 34558999999999999999988877644 566777888766554 33332 1235576 99888999
Q ss_pred CCCCCCC
Q psy13664 132 AQSNHPN 138 (139)
Q Consensus 132 ~RG~~~~ 138 (139)
.||-+++
T Consensus 507 VRGGGe~ 513 (712)
T KOG2237|consen 507 VRGGGEY 513 (712)
T ss_pred eccCccc
Confidence 9998765
No 89
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=62.43 E-value=10 Score=27.66 Aligned_cols=34 Identities=32% Similarity=0.669 Sum_probs=18.8
Q ss_pred EEEEecCCCcEEEEEEeCCC---CCeEEEecCccccc
Q psy13664 70 RHFIQTEDGYILALHRIPSQ---GVPVLLMHGFAGAS 103 (139)
Q Consensus 70 ~h~V~T~DGyiL~L~RIp~~---k~PVlL~HGll~ss 103 (139)
.|..++-||-.+..-|...+ ..|+||.||-=+|-
T Consensus 69 phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf 105 (112)
T PF06441_consen 69 PHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSF 105 (112)
T ss_dssp -EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--G
T ss_pred CCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccH
Confidence 45566668888776666543 57999999965543
No 90
>PRK11443 lipoprotein; Provisional
Probab=62.14 E-value=4.3 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHhccccceEEeecccccccccC
Q psy13664 10 SVVVIITLYLISCSSTDYVFISKDSNLQWTLP 41 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~~~~~~~~~~~~~~w~~p 41 (139)
.++++++++|.||++......+......|+.-
T Consensus 4 ~~~~~~~~lLsgCa~~~~~~~~~~~~~dW~~~ 35 (124)
T PRK11443 4 FIAPLLALLLSGCQIDPYTHAPTLTSTDWYDA 35 (124)
T ss_pred HHHHHHHHHHHhccCCCCCChhhhcccCHHHH
Confidence 35566677899999865444445566678744
No 91
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=61.10 E-value=6.5 Score=21.92 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=8.1
Q ss_pred hhHHHHHHHhccc
Q psy13664 12 VVIITLYLISCSS 24 (139)
Q Consensus 12 ~~~~~~~l~~c~~ 24 (139)
+++.++.|.||++
T Consensus 13 ~l~a~~~LagCss 25 (25)
T PF08139_consen 13 PLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHhhccC
Confidence 3344444999984
No 92
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=60.74 E-value=5.3 Score=33.84 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=38.7
Q ss_pred cCCcceEEEEecCCCcEEEEE-EeCC-C---CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 64 QGFPVERHFIQTEDGYILALH-RIPS-Q---GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 64 ~GY~~E~h~V~T~DGyiL~L~-RIp~-~---k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
.+..+....+++.||..+.=+ -+|. . .|.|+..||-..++..|... ..+|.+ ||-|...|.||...
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~~~~-------~~~a~~-G~~vl~~d~rGqg~ 122 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDPFDL-------LPWAAA-GYAVLAMDVRGQGG 122 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGGHHHH-------HHHHHT-T-EEEEE--TTTSS
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCcccc-------cccccC-CeEEEEecCCCCCC
Confidence 355556666777788777633 3365 2 36678889988886665421 135676 99999999999763
No 93
>COG3042 Hlx Putative hemolysin [General function prediction only]
Probab=57.83 E-value=59 Score=23.13 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=42.8
Q ss_pred chhhhHHHHHHHhccccceEEeecccccccccCCCCCCCccccccCCCHHHHHHHcCCcceEEEEecCCCcEEEEEEeCC
Q psy13664 9 ISVVVIITLYLISCSSTDYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPS 88 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~~~~~~~~~~~~~w~~p~~~~~~p~~~~~~~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~ 88 (139)
++.++-.++.|.+|++.-. ...+..| .+++...+| .+-+..+.|+ +--.++++||....+.++|.
T Consensus 4 ~~~~~~~~~~l~~cs~~~~----~~p~~~~-~~~~gmaNp--------As~yC~~~GG--~l~~~~~~~G~~~~~C~LPd 68 (85)
T COG3042 4 LSLTLAGGLLLAACSSPYG----SQPNAAW-PFYVGMANP--------ASVYCAQQGG--TLEAVKREDGGVVGMCVLPD 68 (85)
T ss_pred HHHHhhhhhhhhccccccc----cCcCCCC-CccccccCH--------HHHHHHHhCC--eeeeEEccCCCEEEEEECCC
Confidence 3555666778999997211 0111121 223444444 3567889999 55578899999999999996
Q ss_pred CC
Q psy13664 89 QG 90 (139)
Q Consensus 89 ~k 90 (139)
++
T Consensus 69 Gr 70 (85)
T COG3042 69 GR 70 (85)
T ss_pred Cc
Confidence 63
No 94
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=56.52 E-value=9.9 Score=30.91 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCeEEEecCcccccccceecCCCCC--ccccccCCCCCeEEEcCCCCCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTT--DLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~s--la~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
.|+||.+|| ..|+....+.. +...++.+.|+.|...|+|=.+++
T Consensus 79 ~p~vly~HG-----Gg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~ 124 (312)
T COG0657 79 APVVLYLHG-----GGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH 124 (312)
T ss_pred CcEEEEEeC-----CeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC
Confidence 688899997 67777554432 333444444999999999966653
No 95
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=55.94 E-value=7.7 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.3
Q ss_pred CchhhhHHHHHHHhccc
Q psy13664 8 DISVVVIITLYLISCSS 24 (139)
Q Consensus 8 ~~~~~~~~~~~l~~c~~ 24 (139)
.+|+++|++|.|||-.+
T Consensus 3 n~Si~VLlaLvLIg~fA 19 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFA 19 (71)
T ss_pred chhHHHHHHHHHHhhhe
Confidence 58999999999999887
No 96
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=54.71 E-value=4.2 Score=35.29 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=22.7
Q ss_pred CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCC-CC
Q psy13664 91 VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQ-SN 135 (139)
Q Consensus 91 ~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~R-G~ 135 (139)
|+|++-||+.++... ...++--||.+ ||-|--.+-| |+
T Consensus 101 PvvIFSHGlgg~R~~------yS~~~~eLAS~-GyVV~aieHrDgS 139 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTS------YSAICGELASH-GYVVAAIEHRDGS 139 (379)
T ss_dssp EEEEEE--TT--TTT------THHHHHHHHHT-T-EEEEE---SS-
T ss_pred CEEEEeCCCCcchhh------HHHHHHHHHhC-CeEEEEeccCCCc
Confidence 667899999999886 34456669998 9999999998 54
No 97
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=53.96 E-value=43 Score=31.21 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=42.2
Q ss_pred HcCCcceEEEEecCCCcEEEEEEe-CCC--CCeEEE-ecCcccccccceecCCCCCccc---cccCCCCCeEEEcCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRI-PSQ--GVPVLL-MHGFAGASDMWVFRNDTTTDLL---PVPDVSSYKWELGGAQSN 135 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RI-p~~--k~PVlL-~HGll~ss~~wv~~g~~~sla~---~Lad~~GyDVWL~n~RG~ 135 (139)
..||....-.|++.||-.|..--+ |++ +.||+| .+-+==...++-. ++..+.+- ++|.+ ||-|-.-|.||+
T Consensus 14 ~~~~~~~~v~V~MRDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~-~~~~~~~p~~~~~aa~-GYavV~qDvRG~ 91 (563)
T COG2936 14 YAGYIERDVMVPMRDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTF-GPQLSALPQPAWFAAQ-GYAVVNQDVRGR 91 (563)
T ss_pred ccceeeeeeeEEecCCeEEEEEEEccCCCCCCceeEEeeccccccccccC-cchhhcccccceeecC-ceEEEEeccccc
Confidence 456777888899999999973322 553 555554 4400001111111 11122222 46676 999999999997
Q ss_pred C
Q psy13664 136 H 136 (139)
Q Consensus 136 ~ 136 (139)
.
T Consensus 92 ~ 92 (563)
T COG2936 92 G 92 (563)
T ss_pred c
Confidence 5
No 98
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=51.63 E-value=28 Score=30.17 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=33.3
Q ss_pred ecCCCcEEEEEEeCC----C-CCeEEEecCcccccccceecCCCCCccccccCCCC-CeEEEcCCC
Q psy13664 74 QTEDGYILALHRIPS----Q-GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSS-YKWELGGAQ 133 (139)
Q Consensus 74 ~T~DGyiL~L~RIp~----~-k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~G-yDVWL~n~R 133 (139)
.+||--.|.+++=.. + .|+++++||= .|............|+.+++ +-|...|+|
T Consensus 74 ~sEdcl~l~i~~p~~~~~~~~~pv~v~ihGG-----~~~~g~~~~~~~~~~~~~~~~~~vv~~~yR 134 (493)
T cd00312 74 GSEDCLYLNVYTPKNTKPGNSLPVMVWIHGG-----GFMFGSGSLYPGDGLAREGDNVIVVSINYR 134 (493)
T ss_pred CCCcCCeEEEEeCCCCCCCCCCCEEEEEcCC-----ccccCCCCCCChHHHHhcCCCEEEEEeccc
Confidence 478988888888421 2 5778899991 12221111112334554434 899999999
No 99
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=49.86 E-value=11 Score=26.87 Aligned_cols=15 Identities=47% Similarity=1.168 Sum_probs=12.1
Q ss_pred EEEecCcccccccce
Q psy13664 93 VLLMHGFAGASDMWV 107 (139)
Q Consensus 93 VlL~HGll~ss~~wv 107 (139)
|+|+||+.+++..|-
T Consensus 1 vv~~hG~~~~~~~~~ 15 (228)
T PF12697_consen 1 VVFLHGFGGSSESWD 15 (228)
T ss_dssp EEEE-STTTTGGGGH
T ss_pred eEEECCCCCCHHHHH
Confidence 689999999998874
No 100
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=49.38 E-value=12 Score=21.12 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=8.7
Q ss_pred hhhHHHHHHHhcc
Q psy13664 11 VVVIITLYLISCS 23 (139)
Q Consensus 11 ~~~~~~~~l~~c~ 23 (139)
++++|.++++||+
T Consensus 12 vVLFILLIIiga~ 24 (26)
T TIGR01732 12 VVLFILLVIVGAA 24 (26)
T ss_pred HHHHHHHHHhhee
Confidence 4556666777876
No 101
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=48.43 E-value=8.2 Score=30.96 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCcEEE--EEEeC--CC--C-CeEEEecCccccc-ccce---ecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 77 DGYILA--LHRIP--SQ--G-VPVLLMHGFAGAS-DMWV---FRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 77 DGyiL~--L~RIp--~~--k-~PVlL~HGll~ss-~~wv---~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
||-.|. +|| | .. + |+||..|+-..+. .... ..+...+....++++ ||-|-..|.||+..
T Consensus 1 DGv~L~adv~~-P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~-GY~vV~~D~RG~g~ 70 (272)
T PF02129_consen 1 DGVRLAADVYR-PGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAER-GYAVVVQDVRGTGG 70 (272)
T ss_dssp TS-EEEEEEEE-E--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHT-T-EEEEEE-TTSTT
T ss_pred CCCEEEEEEEe-cCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhC-CCEEEEECCccccc
Confidence 566665 444 4 22 3 5566777666432 1111 111112233348888 99999999999863
No 102
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=48.12 E-value=7.1 Score=28.97 Aligned_cols=23 Identities=35% Similarity=0.769 Sum_probs=14.3
Q ss_pred HHHHHHHhccccceEEeecccccccccC
Q psy13664 14 IITLYLISCSSTDYVFISKDSNLQWTLP 41 (139)
Q Consensus 14 ~~~~~l~~c~~~~~~~~~~~~~~~w~~p 41 (139)
+.+++|.|||+. ..-....|..+
T Consensus 2 ~~~~~L~gCSSp-----P~P~~v~~~k~ 24 (113)
T PF13117_consen 2 ILALMLSGCSSP-----PEPPPVDWNKP 24 (113)
T ss_pred chheeehhcCCC-----CCCCCcCCCCC
Confidence 567889999873 33344455544
No 103
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=47.32 E-value=12 Score=30.39 Aligned_cols=20 Identities=40% Similarity=0.699 Sum_probs=11.7
Q ss_pred CCeEEEecCccc-ccccceec
Q psy13664 90 GVPVLLMHGFAG-ASDMWVFR 109 (139)
Q Consensus 90 k~PVlL~HGll~-ss~~wv~~ 109 (139)
+.||+|+||..+ ...+|-..
T Consensus 1 ~~PVVlVHG~~~~~~~~w~~~ 21 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWSTL 21 (219)
T ss_dssp S--EEEE--TTTTTCGGCCHH
T ss_pred CCCEEEECCCCcchhhCHHHH
Confidence 469999999999 44577653
No 104
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=45.89 E-value=40 Score=30.13 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=44.5
Q ss_pred HHHHHHHcCCcceEEEEecCCCcEEEEEEeCCC--C-CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCC
Q psy13664 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQ--G-VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQ 133 (139)
Q Consensus 57 ~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~~--k-~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~R 133 (139)
..+-++..+|++|+..|.-+++.+-...|+|.. + |.|++.-|+=+-...+... ..-+|+.. |+-+-..|.=
T Consensus 154 y~~Aa~l~~~~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l-----~~~~l~~r-GiA~LtvDmP 227 (411)
T PF06500_consen 154 YEKAAKLSDYPIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRL-----FRDYLAPR-GIAMLTVDMP 227 (411)
T ss_dssp HHHHHHHSSSEEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHH-----HHCCCHHC-T-EEEEE--T
T ss_pred HHHHHHhCCCCcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHH-----HHHHHHhC-CCEEEEEccC
Confidence 345667899999999999999888888899866 3 4555666655544443221 01245666 7777766665
Q ss_pred CC
Q psy13664 134 SN 135 (139)
Q Consensus 134 G~ 135 (139)
|.
T Consensus 228 G~ 229 (411)
T PF06500_consen 228 GQ 229 (411)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 105
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=43.82 E-value=35 Score=27.02 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=33.9
Q ss_pred chhhhHHHHHHHhccccceEE-eec--ccccccccCCCCCCCccccccCCCHHHHHHHcCCcceEEEEecCCCcE
Q psy13664 9 ISVVVIITLYLISCSSTDYVF-ISK--DSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYI 80 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~~~~~-~~~--~~~~~w~~p~~~~~~p~~~~~~~~~~~~i~~~GY~~E~h~V~T~DGyi 80 (139)
|.+++++++.|.||.-++.-. ++. .....|...... .... +-..++.+-++..+...+ ...+|+.
T Consensus 1 l~lllll~lLLsGCVr~~~~i~~~~~d~i~l~~~l~s~~--~~~~-~w~~~~~~~~~~~~~~~~----~~~~~~~ 68 (209)
T PF11353_consen 1 LALLLLLTLLLSGCVRVDAGITFSGDDRIKLAWRLTSFS--GDEA-PWQESLEQRLKELGGKVQ----RDSDGEQ 68 (209)
T ss_pred CcHHHHHHHHhcceEEEEEEEEECCCCeEEEEEEecccC--cccc-chhhHHHHHHHHhcCcce----ecCCCeE
Confidence 457888899999999664332 211 233334332211 1111 222345666777777665 4445554
No 106
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=42.93 E-value=17 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=12.4
Q ss_pred chhhhHHHHHHHhcccc
Q psy13664 9 ISVVVIITLYLISCSST 25 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~ 25 (139)
|.+.+.|.+.|+||+++
T Consensus 4 i~l~l~v~lllSGC~SV 20 (80)
T COG5645 4 ILLSLMVLLLLSGCGSV 20 (80)
T ss_pred ehHHHHHHHHhCcccee
Confidence 44556666689999984
No 107
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=42.25 E-value=19 Score=29.11 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=25.7
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGG 131 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n 131 (139)
.|.|+++||-.++++.+... +---.|||+.||-|-..+
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~----s~~~~lAd~~GfivvyP~ 53 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAG----SGWNALADREGFIVVYPE 53 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhh----cCHHHHhhcCCeEEEccc
Confidence 46788999999999877542 112346776677665554
No 108
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=41.98 E-value=16 Score=29.80 Aligned_cols=16 Identities=31% Similarity=0.793 Sum_probs=13.4
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
++.+++.|+||.||+.
T Consensus 7 ~~~il~~al~l~GCs~ 22 (200)
T COG3417 7 YASILLLALFLSGCSS 22 (200)
T ss_pred HHHHHHHHHHHhhccc
Confidence 4567889999999995
No 109
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=41.91 E-value=14 Score=29.50 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCeEEEecCcccccccceecCCCC--CccccccCCCCCeEEEcCCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTT--TDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~--sla~~Lad~~GyDVWL~n~RG 134 (139)
|.||+++||..++...|-.-+... .....-... .+|++-.|+..
T Consensus 4 g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~-~~d~ft~df~~ 49 (225)
T PF07819_consen 4 GIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSS-HFDFFTVDFNE 49 (225)
T ss_pred CCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCcc-ceeEEEeccCc
Confidence 689999999988877654432111 001111222 67888777654
No 110
>KOG3551|consensus
Probab=40.63 E-value=20 Score=32.45 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=29.5
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCC------------CCeEEEecCccccc
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQ------------GVPVLLMHGFAGAS 103 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~------------k~PVlL~HGll~ss 103 (139)
-+-||.|.-+...+||-.+-.--+.++ ||.||++|-+++..
T Consensus 446 L~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqLDLhscpKpiVFIlHsfLSAK 498 (506)
T KOG3551|consen 446 LWQHPFEKLKMSSDDGARMLYLDFGGPDGEIQLDLHSCPKPIVFILHSFLSAK 498 (506)
T ss_pred hhhChHHHhccccCCCceEEEEecCCCCccEEeeeccCCCcEEEEehhhhhhh
Confidence 355777999999999976533333322 89999999888754
No 111
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.22 E-value=52 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=26.7
Q ss_pred CCHHHHHHHcCCcceE-EEEecCCCcEEEEEEeC
Q psy13664 55 VPTMDIISSQGFPVER-HFIQTEDGYILALHRIP 87 (139)
Q Consensus 55 ~~~~~~i~~~GY~~E~-h~V~T~DGyiL~L~RIp 87 (139)
..+...+..+|+.+-. .-.+|.||+.|..+.+.
T Consensus 16 a~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 16 SQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred HHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 3567788999999866 55567899999999885
No 112
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=39.06 E-value=18 Score=27.59 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=12.0
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
.+.+++++|.|||.
T Consensus 5 ~~~LL~L~LsGCS~ 18 (133)
T PRK10781 5 PICLLALMLTGCSM 18 (133)
T ss_pred HHHHHHHHHhhccc
Confidence 46788899999997
No 113
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=38.98 E-value=21 Score=27.56 Aligned_cols=14 Identities=36% Similarity=0.916 Sum_probs=10.6
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
++++|+.||.+|++
T Consensus 8 ~Lv~~~~~Lvsc~~ 21 (142)
T TIGR03042 8 LLVLLLTFLVSCSG 21 (142)
T ss_pred HHHHHHHHHHHcCC
Confidence 34557778999996
No 114
>PLN02965 Probable pheophorbidase
Probab=37.96 E-value=20 Score=27.88 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=14.4
Q ss_pred eEEEecCccccccccee
Q psy13664 92 PVLLMHGFAGASDMWVF 108 (139)
Q Consensus 92 PVlL~HGll~ss~~wv~ 108 (139)
.|+|+||+..++..|-.
T Consensus 5 ~vvllHG~~~~~~~w~~ 21 (255)
T PLN02965 5 HFVFVHGASHGAWCWYK 21 (255)
T ss_pred EEEEECCCCCCcCcHHH
Confidence 48899999999988854
No 115
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=37.81 E-value=14 Score=29.08 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.6
Q ss_pred CeEEEecCcccccccce
Q psy13664 91 VPVLLMHGFAGASDMWV 107 (139)
Q Consensus 91 ~PVlL~HGll~ss~~wv 107 (139)
..|+++|||.++..+|-
T Consensus 5 hLvV~vHGL~G~~~d~~ 21 (217)
T PF05057_consen 5 HLVVFVHGLWGNPADMR 21 (217)
T ss_pred EEEEEeCCCCCCHHHHH
Confidence 45899999999998874
No 116
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=37.78 E-value=32 Score=27.56 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=17.0
Q ss_pred HHHHcCCcceE-EEEecCCCcEEEEEEe
Q psy13664 60 IISSQGFPVER-HFIQTEDGYILALHRI 86 (139)
Q Consensus 60 ~i~~~GY~~E~-h~V~T~DGyiL~L~RI 86 (139)
+++++-=..|. +.|.|.|||.|.++=+
T Consensus 94 lvrk~~s~Ie~~~dvkT~DGy~lRvf~i 121 (194)
T PF01015_consen 94 LVRKWQSRIEAIVDVKTKDGYLLRVFCI 121 (194)
T ss_dssp C--TTC-EEEEEEEEEETTTEEEEEEEE
T ss_pred ceeecceEEEEEEEEEcCCCcEEEEEEE
Confidence 44454444444 4589999999987765
No 117
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=37.52 E-value=24 Score=25.63 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.4
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
++++++.+++|.||.+
T Consensus 6 ~sal~~~~~L~~GCAs 21 (96)
T PF11839_consen 6 LSALALAALLLAGCAS 21 (96)
T ss_pred HHHHHHHHHHHhHccC
Confidence 5777788888999998
No 118
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=36.31 E-value=21 Score=27.99 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=12.7
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
+..+++.+++|.||+.
T Consensus 5 ~~~~~~~al~l~gC~~ 20 (189)
T TIGR02722 5 IIFVALLALLLSGCVS 20 (189)
T ss_pred HHHHHHHHHHHccCCC
Confidence 3556778889999987
No 119
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=35.90 E-value=19 Score=24.81 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=12.9
Q ss_pred eEEEecCcccccccce
Q psy13664 92 PVLLMHGFAGASDMWV 107 (139)
Q Consensus 92 PVlL~HGll~ss~~wv 107 (139)
||++.||...+...|.
T Consensus 1 ~vv~~HG~~~~~~~~~ 16 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQ 16 (145)
T ss_dssp EEEEECTTTTTTHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 6899999998877654
No 120
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=35.82 E-value=14 Score=28.47 Aligned_cols=19 Identities=26% Similarity=0.712 Sum_probs=12.7
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
++.|+++||+.++.+.|..
T Consensus 14 ~~lvi~LHG~G~~~~~~~~ 32 (216)
T PF02230_consen 14 KPLVILLHGYGDSEDLFAL 32 (216)
T ss_dssp SEEEEEE--TTS-HHHHHH
T ss_pred ceEEEEECCCCCCcchhHH
Confidence 6788999999999876554
No 121
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=35.55 E-value=25 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHhccc
Q psy13664 10 SVVVIITLYLISCSS 24 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~ 24 (139)
++.|+++++|+||+.
T Consensus 17 ~i~~l~i~~l~~c~~ 31 (131)
T PF10794_consen 17 LIWFLVIIVLCGCIA 31 (131)
T ss_pred HHHHHHHHHHhcccc
Confidence 456788889999997
No 122
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=34.69 E-value=44 Score=27.06 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=19.6
Q ss_pred HHHHHcCCcceEE-EEecCCCcEEEEEEe
Q psy13664 59 DIISSQGFPVERH-FIQTEDGYILALHRI 86 (139)
Q Consensus 59 ~~i~~~GY~~E~h-~V~T~DGyiL~L~RI 86 (139)
.+++++-=..|.+ .|.|.|||.|.++=|
T Consensus 87 SlVrk~~S~Ie~~vdvkTkDGy~lRv~~i 115 (203)
T PRK04057 87 SLVRRRTSKIDAIVDVTTKDGYKVRVKPV 115 (203)
T ss_pred hHhccCceeEEEEEEEEcCCCCEEEEEEE
Confidence 3555555455544 478999999988876
No 123
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.23 E-value=1.8e+02 Score=25.41 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCCcEEEEEEe-CCC----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCCC
Q psy13664 76 EDGYILALHRI-PSQ----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHPN 138 (139)
Q Consensus 76 ~DGyiL~L~RI-p~~----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~~ 138 (139)
-+|..+.=+-+ |+. .|.|+--||-.++...|--. +.+|.+ ||-|..+|.||-...
T Consensus 64 ~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~~-------l~wa~~-Gyavf~MdvRGQg~~ 123 (321)
T COG3458 64 YGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHDM-------LHWAVA-GYAVFVMDVRGQGSS 123 (321)
T ss_pred cCCceEEEEEEeecccCCccceEEEEeeccCCCCCcccc-------cccccc-ceeEEEEecccCCCc
Confidence 46666654433 432 57788999999888765321 235555 999999999997654
No 124
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.07 E-value=1.1e+02 Score=20.12 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=28.8
Q ss_pred CCHHHHHHHcCCcceEEEEec-CCCcEEEEEEeCC
Q psy13664 55 VPTMDIISSQGFPVERHFIQT-EDGYILALHRIPS 88 (139)
Q Consensus 55 ~~~~~~i~~~GY~~E~h~V~T-~DGyiL~L~RIp~ 88 (139)
..+...+..+|..+..-++.| .||+.+..|.+..
T Consensus 15 a~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d 49 (76)
T cd04927 15 HDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49 (76)
T ss_pred HHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC
Confidence 357788899999998888885 9999999999853
No 125
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.33 E-value=78 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCHHHHHHHcCCcceEEEEecCCCcEEEEEEeC
Q psy13664 55 VPTMDIISSQGFPVERHFIQTEDGYILALHRIP 87 (139)
Q Consensus 55 ~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp 87 (139)
..+...++++|..+..-.+.|.+++.+..+|+.
T Consensus 16 ~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~ 48 (72)
T cd04926 16 SDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48 (72)
T ss_pred HHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence 457888999999997777888888998888884
No 126
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=32.23 E-value=29 Score=26.97 Aligned_cols=16 Identities=19% Similarity=0.685 Sum_probs=12.7
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
++.+++++|+|.||+.
T Consensus 2 ~~~~~~~~~~l~gC~~ 17 (158)
T TIGR02898 2 LFIILLLLLVLTGCTN 17 (158)
T ss_pred chHHHHHHHHHhhccc
Confidence 3567788889999985
No 127
>KOG2100|consensus
Probab=31.68 E-value=1.7e+02 Score=28.01 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=49.3
Q ss_pred CCCHHHHHHHcCCcceEEEEecCCCcEEEEEEe-CCC-----CCeEE-EecCcccccccceecCCCCCccccccCCCCCe
Q psy13664 54 IVPTMDIISSQGFPVERHFIQTEDGYILALHRI-PSQ-----GVPVL-LMHGFAGASDMWVFRNDTTTDLLPVPDVSSYK 126 (139)
Q Consensus 54 ~~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RI-p~~-----k~PVl-L~HGll~ss~~wv~~g~~~sla~~Lad~~GyD 126 (139)
.....+.+....+|..+..-..-||+.+...-+ |+. |.|++ ..||=-+ |-.+..-. ..+..-+++.+.||-
T Consensus 483 n~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~-sq~v~~~~-~~~~~~~~~s~~g~~ 560 (755)
T KOG2100|consen 483 NEELKKTIENVALPIVEFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPG-SQSVTSKF-SVDWNEVVVSSRGFA 560 (755)
T ss_pred ChhhHHHhhcccCCcceeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCC-cceeeeeE-EecHHHHhhccCCeE
Confidence 344566777677777666655569998864444 543 66665 5666333 22222211 122333344445999
Q ss_pred EEEcCCCCCCCC
Q psy13664 127 WELGGAQSNHPN 138 (139)
Q Consensus 127 VWL~n~RG~~~~ 138 (139)
|-..|.||++.+
T Consensus 561 v~~vd~RGs~~~ 572 (755)
T KOG2100|consen 561 VLQVDGRGSGGY 572 (755)
T ss_pred EEEEcCCCcCCc
Confidence 999999998764
No 128
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.57 E-value=29 Score=27.79 Aligned_cols=17 Identities=41% Similarity=0.866 Sum_probs=14.4
Q ss_pred chhhhHHHHHHHhcccc
Q psy13664 9 ISVVVIITLYLISCSST 25 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~ 25 (139)
++++++|.+||++|++.
T Consensus 6 ~i~Lliis~fl~a~~s~ 22 (182)
T COG2143 6 LIVLLIISLFLSACKSN 22 (182)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 46788889999999975
No 129
>PRK15396 murein lipoprotein; Provisional
Probab=31.42 E-value=35 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=9.9
Q ss_pred hhhHHHHHHHhcccc
Q psy13664 11 VVVIITLYLISCSST 25 (139)
Q Consensus 11 ~~~~~~~~l~~c~~~ 25 (139)
.+++.+++|.||++.
T Consensus 10 av~ls~~LLaGCAs~ 24 (78)
T PRK15396 10 AVILGSTLLAGCSSN 24 (78)
T ss_pred HHHHHHHHHHHcCCc
Confidence 344445569999984
No 130
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=31.24 E-value=24 Score=27.86 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=11.1
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
+++++++.|.||++
T Consensus 5 ~~l~l~lll~~C~~ 18 (216)
T PF11153_consen 5 LLLLLLLLLTGCST 18 (216)
T ss_pred HHHHHHHHHHhhcC
Confidence 45557788999998
No 131
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=31.11 E-value=1.2e+02 Score=28.94 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=44.0
Q ss_pred HcCCcceEEEEecCCCcEEEEEEeCCC-----CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCCC
Q psy13664 63 SQGFPVERHFIQTEDGYILALHRIPSQ-----GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNHP 137 (139)
Q Consensus 63 ~~GY~~E~h~V~T~DGyiL~L~RIp~~-----k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~~ 137 (139)
..+|.+|++..+.+||-.+-.|-+.++ +|..|.-=|=+.-+.. +.-.-+.-..| +. |.---+.|.||-++
T Consensus 389 a~~~~veQ~~atSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vslt---P~fs~~~~~WL-er-Gg~~v~ANIRGGGE 463 (648)
T COG1505 389 ADNYEVEQFFATSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLT---PRFSGSRKLWL-ER-GGVFVLANIRGGGE 463 (648)
T ss_pred ccCceEEEEEEEcCCCccccEEEEecCCcCCCCceEEEeccccccccC---CccchhhHHHH-hc-CCeEEEEecccCCc
Confidence 348999999999999999988888522 2333333333332221 22222333444 44 55555999999887
Q ss_pred C
Q psy13664 138 N 138 (139)
Q Consensus 138 ~ 138 (139)
+
T Consensus 464 f 464 (648)
T COG1505 464 F 464 (648)
T ss_pred c
Confidence 5
No 132
>COG0400 Predicted esterase [General function prediction only]
Probab=30.88 E-value=31 Score=27.65 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.3
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
.|.|+|.||+.++...++.
T Consensus 18 ~~~iilLHG~Ggde~~~~~ 36 (207)
T COG0400 18 APLLILLHGLGGDELDLVP 36 (207)
T ss_pred CcEEEEEecCCCChhhhhh
Confidence 4569999999988777765
No 133
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=30.33 E-value=63 Score=24.73 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=28.4
Q ss_pred CHHHHHHHcCCcceEEEEecCCCcEEEEEEeCCCCCeEEEecC
Q psy13664 56 PTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHG 98 (139)
Q Consensus 56 ~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp~~k~PVlL~HG 98 (139)
.+.+.+++.||..|...+....|..+.-.+.-....||++.+|
T Consensus 153 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~~~~ 195 (198)
T PRK00377 153 NALSALENIGFNLEITEVIIAKGMKTKVGTAMMTRNPIFIISG 195 (198)
T ss_pred HHHHHHHHcCCCeEEEEEehhhcccccCCcEeecCCCEEEEEE
Confidence 3455667889988888888877776653222223577887765
No 134
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=30.07 E-value=34 Score=22.78 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.2
Q ss_pred CCCCchhhhHHHHH
Q psy13664 5 NPGDISVVVIITLY 18 (139)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (139)
.|||-++++++.|+
T Consensus 9 ~p~d~~~~lLilii 22 (61)
T PF06692_consen 9 APGDYSGPLLILII 22 (61)
T ss_pred CCccchhHHHHHHH
Confidence 59999998887664
No 135
>KOG3847|consensus
Probab=29.94 E-value=31 Score=30.61 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=28.9
Q ss_pred CeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCCCC
Q psy13664 91 VPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQSNH 136 (139)
Q Consensus 91 ~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG~~ 136 (139)
|.|++-|||.++..-+-.- .--||.. ||.|-....|-+.
T Consensus 119 PvvvFSHGLggsRt~YSa~------c~~LASh-G~VVaavEHRD~S 157 (399)
T KOG3847|consen 119 PVVVFSHGLGGSRTLYSAY------CTSLASH-GFVVAAVEHRDRS 157 (399)
T ss_pred cEEEEecccccchhhHHHH------hhhHhhC-ceEEEEeecccCc
Confidence 5567999999988765443 2337887 9999888888653
No 136
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=29.62 E-value=34 Score=27.76 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHhccc
Q psy13664 10 SVVVIITLYLISCSS 24 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~ 24 (139)
.++++++++|.|||.
T Consensus 4 l~~~~~~~lL~~Cs~ 18 (204)
T PF11873_consen 4 LLLLLIALLLSGCSS 18 (204)
T ss_pred HHHHHHHHHHHHhCC
Confidence 456677888999994
No 137
>PF14120 YhzD: YhzD-like protein
Probab=29.43 E-value=41 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=25.7
Q ss_pred cCCCHHHHHHHcCCcceEEEEecCCCcEEEEEE
Q psy13664 53 NIVPTMDIISSQGFPVERHFIQTEDGYILALHR 85 (139)
Q Consensus 53 ~~~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~R 85 (139)
+...=.++++..||.-.+|+++...|-.|-.||
T Consensus 29 AK~~G~~~L~Ek~~~~~THR~v~~~GKLiLFhr 61 (61)
T PF14120_consen 29 AKEIGEQKLKEKGYEEKTHRCVSSSGKLILFHR 61 (61)
T ss_pred HHHHHHHHHHHCChhhcceeeeCCCCcEEEeeC
Confidence 333446689999999999999999998774443
No 138
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.36 E-value=1.5e+02 Score=18.98 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCHHHHHHHcCCcceEEEEec-CCCcEEEEEEeC
Q psy13664 55 VPTMDIISSQGFPVERHFIQT-EDGYILALHRIP 87 (139)
Q Consensus 55 ~~~~~~i~~~GY~~E~h~V~T-~DGyiL~L~RIp 87 (139)
..+...+..+|..+..-++.| .||+.+..+.+.
T Consensus 16 ~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~ 49 (73)
T cd04900 16 ARIAGALDQLGLNILDARIFTTRDGYALDTFVVL 49 (73)
T ss_pred HHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEE
Confidence 357888999999998877765 599999999984
No 139
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=28.36 E-value=34 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.1
Q ss_pred hhHHHHHHHhccc
Q psy13664 12 VVIITLYLISCSS 24 (139)
Q Consensus 12 ~~~~~~~l~~c~~ 24 (139)
+++++++|.||++
T Consensus 8 l~~~~l~LsgCas 20 (182)
T TIGR00752 8 FTALCFGLTGCIA 20 (182)
T ss_pred HHHHHHHHhcccC
Confidence 4455788999998
No 140
>PRK13792 lysozyme inhibitor; Provisional
Probab=27.84 E-value=2.7e+02 Score=21.00 Aligned_cols=38 Identities=3% Similarity=-0.116 Sum_probs=21.0
Q ss_pred CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEc-CCCC
Q psy13664 90 GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELG-GAQS 134 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~-n~RG 134 (139)
+..+.|....-+|+..|.. + .|.+..+ |-+.-|. +++|
T Consensus 77 g~~~~l~~v~SaSGaRY~~-~-----~y~wWtK-G~eA~L~~~~~~ 115 (127)
T PRK13792 77 NSTLVFSNVISASGAKYAA-G-----QYIWWTK-GEEATLYGDWKG 115 (127)
T ss_pred CCEEEEEEeeecCcccCcC-C-----cEEEEEc-CCcEEEEeccCC
Confidence 3455666656666666652 1 2556665 6666554 4443
No 141
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.03 E-value=22 Score=30.69 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=14.1
Q ss_pred cccCCCCCeEEEcCCCC
Q psy13664 118 PVPDVSSYKWELGGAQS 134 (139)
Q Consensus 118 ~Lad~~GyDVWL~n~RG 134 (139)
-+.|+ |||+++.++||
T Consensus 235 T~~E~-G~~~~~~~wrg 250 (319)
T COG3181 235 TLKEQ-GYDVVMSIWRG 250 (319)
T ss_pred ChHhc-CCceeeeeeeE
Confidence 47788 99999999997
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=26.93 E-value=41 Score=27.19 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=10.4
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
++++++++|+||++
T Consensus 9 ~~~~~~~~lsgCs~ 22 (243)
T PRK10866 9 AAATLSLFLAGCSG 22 (243)
T ss_pred HHHHHHHHHhhcCC
Confidence 45556788999985
No 143
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins. Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.
Probab=26.58 E-value=13 Score=31.32 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=15.7
Q ss_pred ccCCCHHHHHHHcCCcceEEE
Q psy13664 52 KNIVPTMDIISSQGFPVERHF 72 (139)
Q Consensus 52 ~~~~~~~~~i~~~GY~~E~h~ 72 (139)
=+..+..++-.+-||..++..
T Consensus 48 YPtKNLEDLYdKegyrd~eF~ 68 (255)
T TIGR01742 48 YPIKNLEDLYDKEGYRDGEFK 68 (255)
T ss_pred CCccCHHHHhhhhccccccCC
Confidence 345678888999999777654
No 144
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=26.36 E-value=43 Score=21.23 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=10.9
Q ss_pred hhhHHHHHHHhcccc
Q psy13664 11 VVVIITLYLISCSST 25 (139)
Q Consensus 11 ~~~~~~~~l~~c~~~ 25 (139)
..++++++|.||-.+
T Consensus 8 ~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 8 GIFLLTMLLAACQAN 22 (46)
T ss_pred HHHHHHHHHHHhhhc
Confidence 455666789999874
No 145
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=25.84 E-value=19 Score=30.72 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=23.9
Q ss_pred CCeEEEecCccccc--ccceecCCCCCccccccC-CCCCeEEEcCCC
Q psy13664 90 GVPVLLMHGFAGAS--DMWVFRNDTTTDLLPVPD-VSSYKWELGGAQ 133 (139)
Q Consensus 90 k~PVlL~HGll~ss--~~wv~~g~~~sla~~Lad-~~GyDVWL~n~R 133 (139)
+|.++++||..++. ..|+..-. ..+|.. .+.+.|.+.||.
T Consensus 71 ~pt~iiiHGw~~~~~~~~~~~~~~----~all~~~~~d~NVI~VDWs 113 (331)
T PF00151_consen 71 KPTVIIIHGWTGSGSSESWIQDMI----KALLQKDTGDYNVIVVDWS 113 (331)
T ss_dssp SEEEEEE--TT-TT-TTTHHHHHH----HHHHCC--S-EEEEEEE-H
T ss_pred CCeEEEEcCcCCcccchhHHHHHH----HHHHhhccCCceEEEEcch
Confidence 78899999999999 47876432 223333 138899999986
No 146
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.44 E-value=45 Score=25.49 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=12.8
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
.+|++++++++.|||.
T Consensus 4 ~~~~~~~~~~~~~~~~ 19 (235)
T TIGR03302 4 LILLLALLLLLAGCSS 19 (235)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3667777778999998
No 147
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=25.37 E-value=60 Score=17.82 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHhccc
Q psy13664 10 SVVVIITLYLISCSS 24 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~ 24 (139)
.+++..++.|.||.-
T Consensus 3 ~~~~~~~~~LsgCG~ 17 (24)
T PF13627_consen 3 LLLLALALALSGCGQ 17 (24)
T ss_pred HHHHHHHHHHHhccc
Confidence 345667778999973
No 148
>KOG2281|consensus
Probab=24.84 E-value=39 Score=32.65 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=35.4
Q ss_pred eEEEEecCCCcEEEEEEe---CCC-----CCe-EEEecC-----cccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 69 ERHFIQTEDGYILALHRI---PSQ-----GVP-VLLMHG-----FAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 69 E~h~V~T~DGyiL~L~RI---p~~-----k~P-VlL~HG-----ll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
|...+++.-|.+| |-. |+. |.| |+.+-| +..|+..|+..-. --.||.. ||-||..|+||
T Consensus 614 eif~fqs~tg~~l--YgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR----~~~Lasl-Gy~Vv~IDnRG 686 (867)
T KOG2281|consen 614 EIFSFQSKTGLTL--YGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLR----FCRLASL-GYVVVFIDNRG 686 (867)
T ss_pred hheeeecCCCcEE--EEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhh----hhhhhhc-ceEEEEEcCCC
Confidence 5566677555543 333 332 333 333333 3345555554321 2357888 99999999999
Q ss_pred CC
Q psy13664 135 NH 136 (139)
Q Consensus 135 ~~ 136 (139)
+.
T Consensus 687 S~ 688 (867)
T KOG2281|consen 687 SA 688 (867)
T ss_pred cc
Confidence 85
No 149
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=24.69 E-value=45 Score=24.03 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=14.3
Q ss_pred cccCCCHHHHHHHcCCcceE
Q psy13664 51 IKNIVPTMDIISSQGFPVER 70 (139)
Q Consensus 51 ~~~~~~~~~~i~~~GY~~E~ 70 (139)
++..|+-.|+....|=|.-+
T Consensus 46 l~~GmTk~qV~~lLGtP~~~ 65 (113)
T PRK11548 46 IHVGMTQQQVAYTLGTPMMQ 65 (113)
T ss_pred hcCCCCHHHHHHHcCCCccc
Confidence 35567888888888877543
No 150
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=24.65 E-value=69 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=18.1
Q ss_pred HHHHcCCcce-EEEEecCCCcEEEEEEe
Q psy13664 60 IISSQGFPVE-RHFIQTEDGYILALHRI 86 (139)
Q Consensus 60 ~i~~~GY~~E-~h~V~T~DGyiL~L~RI 86 (139)
+++++-=.++ ...|.|.|||.+.++=+
T Consensus 96 lVRR~~SrIdai~dVkTkDGy~~RV~~~ 123 (214)
T COG1890 96 LVRRRTSRIDAIVDVKTKDGYVLRVKAM 123 (214)
T ss_pred HHhcccceeeeEEEEEecCCcEEEEEEE
Confidence 4454443333 45799999999877655
No 151
>PF12912 N_NLPC_P60: NLPC_P60 stabilising domain, N term; PDB: 3M1U_B.
Probab=24.53 E-value=25 Score=25.52 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
++++++++|.||+.
T Consensus 3 ~~~l~~lll~gCs~ 16 (124)
T PF12912_consen 3 ILLLALLLLAGCSS 16 (124)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhCC
Confidence 45677778899997
No 152
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.86 E-value=26 Score=26.35 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHhcc
Q psy13664 9 ISVVVIITLYLISCS 23 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~ 23 (139)
|.+|||..++|+||=
T Consensus 31 iL~VILgiLLliGCW 45 (118)
T PF14991_consen 31 ILIVILGILLLIGCW 45 (118)
T ss_dssp ---------------
T ss_pred eHHHHHHHHHHHhhe
Confidence 556777777899995
No 153
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=23.73 E-value=69 Score=28.44 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=38.0
Q ss_pred cCCcceEEEEecCCCcEEEEEEeCCC-------CCeEEEecCcccccccceecCCCCCccccccCCCCCeEEEcCCCC
Q psy13664 64 QGFPVERHFIQTEDGYILALHRIPSQ-------GVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKWELGGAQS 134 (139)
Q Consensus 64 ~GY~~E~h~V~T~DGyiL~L~RIp~~-------k~PVlL~HGll~ss~~wv~~g~~~sla~~Lad~~GyDVWL~n~RG 134 (139)
.-.++++..|-..+-. +|.|+.+. ++|||++--+...-.. . .+|+--.|.+ |+||||.||+-
T Consensus 71 ~~~~v~e~vV~~~~~~--~L~~y~~~~~~~~~~~~pvLiV~Pl~g~~~~--L---~RS~V~~Ll~--g~dVYl~DW~~ 139 (406)
T TIGR01849 71 KDVPIRERVVWDKPFC--RLIHFKRQGFRAELPGPAVLIVAPMSGHYAT--L---LRSTVEALLP--DHDVYITDWVN 139 (406)
T ss_pred EEeeeEEEEEEECCCe--EEEEECCCCcccccCCCcEEEEcCCchHHHH--H---HHHHHHHHhC--CCcEEEEeCCC
Confidence 3456666666665543 45666432 2799999877633333 2 2455444433 89999999973
No 154
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=23.38 E-value=94 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=20.1
Q ss_pred hhHHHHHHHhccccce-EE-eecccccccccCCC
Q psy13664 12 VVIITLYLISCSSTDY-VF-ISKDSNLQWTLPDV 43 (139)
Q Consensus 12 ~~~~~~~l~~c~~~~~-~~-~~~~~~~~w~~p~~ 43 (139)
+++.++.|.||....+ +. ...-.+..|.+.+.
T Consensus 10 ~ll~~~ll~sC~~~~~vy~~y~~~p~~~W~k~d~ 43 (156)
T TIGR03511 10 FFLGACVLVSCTENTDVYHSYQSTPHGGWQKSDT 43 (156)
T ss_pred HHHHHHHhcccCCCCeEEEEeeECCccCcCCCCc
Confidence 4455578999998773 32 33335568987744
No 155
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=23.35 E-value=57 Score=20.40 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=16.3
Q ss_pred chhhhHHHHHHHhccccceEEe
Q psy13664 9 ISVVVIITLYLISCSSTDYVFI 30 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~~~~~~~ 30 (139)
++++++|..+|+|...+.++..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYta 26 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTA 26 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhhe
Confidence 5677888888999988655543
No 156
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=23.23 E-value=31 Score=26.84 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=10.5
Q ss_pred CCeEEEecCccccccccee
Q psy13664 90 GVPVLLMHGFAGASDMWVF 108 (139)
Q Consensus 90 k~PVlL~HGll~ss~~wv~ 108 (139)
|+=||.+||..+|++.|-.
T Consensus 4 k~riLcLHG~~~na~if~~ 22 (212)
T PF03959_consen 4 KPRILCLHGYGQNAEIFRQ 22 (212)
T ss_dssp --EEEEE--TT--HHHHHH
T ss_pred CceEEEeCCCCcCHHHHHH
Confidence 5669999999999987654
No 157
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=22.91 E-value=62 Score=22.97 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=10.3
Q ss_pred hhhHHHHHHHhcccc
Q psy13664 11 VVVIITLYLISCSST 25 (139)
Q Consensus 11 ~~~~~~~~l~~c~~~ 25 (139)
.+++.+.+|.||++.
T Consensus 9 aviLs~~LLaGCAs~ 23 (85)
T PRK09973 9 AVVLATCLLSGCVNE 23 (85)
T ss_pred HHHHHHHHHHHcCCc
Confidence 344445679999984
No 158
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=22.90 E-value=17 Score=23.58 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=10.9
Q ss_pred ecCCCcEEEEEEeCCC-CCeEEEecC
Q psy13664 74 QTEDGYILALHRIPSQ-GVPVLLMHG 98 (139)
Q Consensus 74 ~T~DGyiL~L~RIp~~-k~PVlL~HG 98 (139)
+|+|||+..-..|-.. ..-.+.-||
T Consensus 2 ~t~DGyvFdp~dI~~~~~~gy~vpHg 27 (53)
T PF04270_consen 2 TTSDGYVFDPADIISETGDGYVVPHG 27 (53)
T ss_dssp B-TTS-B--GGG--EE-SSEEEEEET
T ss_pred cCCCCceeCHHHccccCCCeEEeeCC
Confidence 5778886653333222 455666776
No 159
>PF04390 LptE: Lipopolysaccharide-assembly; InterPro: IPR007485 The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. LptE forms a complex with LptD, which is involved in the assembly of LPS in the outer leaflet of the outer membrane. Essential for envelope biogenesis [, , ].; GO: 0016044 cellular membrane organization, 0043165 Gram-negative-bacterium-type cell outer membrane assembly; PDB: 3BF2_A 2JXP_A 2R76_A.
Probab=22.33 E-value=29 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.874 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcc
Q psy13664 12 VVIITLYLISCS 23 (139)
Q Consensus 12 ~~~~~~~l~~c~ 23 (139)
+++++++|.||.
T Consensus 1 ll~~~l~lsgCG 12 (155)
T PF04390_consen 1 LLLLLLFLSGCG 12 (155)
T ss_dssp ------------
T ss_pred ChHHHHhhCcCe
Confidence 467888999995
No 160
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.26 E-value=2.2e+02 Score=18.41 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=29.1
Q ss_pred CCHHHHHHHcCCcceEEEEecCCCcEEEEEEeC
Q psy13664 55 VPTMDIISSQGFPVERHFIQTEDGYILALHRIP 87 (139)
Q Consensus 55 ~~~~~~i~~~GY~~E~h~V~T~DGyiL~L~RIp 87 (139)
..+...+..+|..+..-++.|.||+.+..+.+.
T Consensus 15 ~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~ 47 (74)
T cd04925 15 SEVFAVLADLHCNVVEARAWTHNGRLACVIYVR 47 (74)
T ss_pred HHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEE
Confidence 357889999999999988999999999999884
No 161
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=58 Score=26.40 Aligned_cols=18 Identities=39% Similarity=0.899 Sum_probs=14.7
Q ss_pred CCCCCCCCchhhhHHHHHHHhccc
Q psy13664 1 MRPWNPGDISVVVIITLYLISCSS 24 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~c~~ 24 (139)
|.+| ..++.|+.|.||++
T Consensus 1 Mm~w------l~~~aal~L~~Cas 18 (190)
T COG3009 1 MMRW------LMIIAALLLAGCAS 18 (190)
T ss_pred CchH------HHHHHHHHHHhcCC
Confidence 6677 66777888999998
No 162
>PRK02463 OxaA-like protein precursor; Provisional
Probab=21.49 E-value=58 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHhcccc
Q psy13664 10 SVVVIITLYLISCSST 25 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~~ 25 (139)
++++.++++|+||+..
T Consensus 12 ~~~~~~~~~lsgc~~~ 27 (307)
T PRK02463 12 GLALSMLLTLTGCVGR 27 (307)
T ss_pred HHHHHHHHHHhccCCC
Confidence 4667778899999853
No 163
>PRK10175 lipoprotein; Provisional
Probab=21.01 E-value=52 Score=22.93 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHhccc
Q psy13664 10 SVVVIITLYLISCSS 24 (139)
Q Consensus 10 ~~~~~~~~~l~~c~~ 24 (139)
.++.+.++.|.||++
T Consensus 4 ~~~~~~~~~lsGCgS 18 (75)
T PRK10175 4 IVVSIMVTLLSGCGS 18 (75)
T ss_pred HHHHHHHHHhccchh
Confidence 344555667999998
No 164
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.87 E-value=1.8e+02 Score=25.20 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=10.9
Q ss_pred chhhhHHHHHHHhccc
Q psy13664 9 ISVVVIITLYLISCSS 24 (139)
Q Consensus 9 ~~~~~~~~~~l~~c~~ 24 (139)
|+++++.++..+||++
T Consensus 9 i~~lll~lllva~C~~ 24 (310)
T COG4594 9 ILTLLLLLLLVAACSS 24 (310)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455555666789998
No 165
>PRK10598 lipoprotein; Provisional
Probab=20.84 E-value=52 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=19.4
Q ss_pred hhhHHHHHHHhccc-cceEEeecccccc
Q psy13664 11 VVVIITLYLISCSS-TDYVFISKDSNLQ 37 (139)
Q Consensus 11 ~~~~~~~~l~~c~~-~~~~~~~~~~~~~ 37 (139)
++++++++|.||.+ ..|.+.+++++..
T Consensus 8 ~~~~~~~llsGC~sl~~ysISE~Ein~y 35 (186)
T PRK10598 8 AALLVSGLLVGCNQLTQYTISEQEINQY 35 (186)
T ss_pred HHHHHHHHHhcccccCceeecHHHHHHH
Confidence 45667778999985 4677777777654
No 166
>PF14090 HTH_39: Helix-turn-helix domain
Probab=20.70 E-value=1.9e+02 Score=18.86 Aligned_cols=19 Identities=32% Similarity=0.824 Sum_probs=13.8
Q ss_pred HHHcCCcceEEEE--ecCCCc
Q psy13664 61 ISSQGFPVERHFI--QTEDGY 79 (139)
Q Consensus 61 i~~~GY~~E~h~V--~T~DGy 79 (139)
+++.||+++++.+ .|.+|.
T Consensus 37 LR~~G~~I~t~~~~~~~~~g~ 57 (70)
T PF14090_consen 37 LRKKGYPIVTEWVTVPTEDGR 57 (70)
T ss_pred HHHcCCeeeEEEEEeeccCCC
Confidence 4689999988874 445665
No 167
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=20.59 E-value=1.5e+02 Score=24.25 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=27.6
Q ss_pred cCCcceEEEEecCCCcEEE---EEEeCCC------------------CCeEEEecCc--ccccccceecC
Q psy13664 64 QGFPVERHFIQTEDGYILA---LHRIPSQ------------------GVPVLLMHGF--AGASDMWVFRN 110 (139)
Q Consensus 64 ~GY~~E~h~V~T~DGyiL~---L~RIp~~------------------k~PVlL~HGl--l~ss~~wv~~g 110 (139)
.-|+|+.|.+.+++|- |. .+||+.. .|.+|.-|+= +..-++|...+
T Consensus 54 D~FdCQ~h~F~~~~~k-l~~~~~wRi~~pdggf~~r~~~q~fvqD~~~Pg~lyn~dneyL~yqddWyIl~ 122 (198)
T PF07137_consen 54 DTFDCQLHEFHTEKDK-LVGKINWRIPTPDGGFFTRSAVQRFVQDPSQPGILYNHDNEYLHYQDDWYILG 122 (198)
T ss_dssp TTTSEEEEEEEEETTE-EEEEEEEEEE-TTS-EEEEEEEEEEEE-SS-TTEEEE---GGG-EEEEEEEEE
T ss_pred cccccccceeecCCCe-EEEEEEEEeecCCCCceeccceeEeeeCCCCCceEEecCCeeEEeeeeEEEEe
Confidence 3589999999998774 43 4677533 4678887752 34445676654
No 168
>PRK11372 lysozyme inhibitor; Provisional
Probab=20.26 E-value=71 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=10.2
Q ss_pred hhhHHHHHHHhccc
Q psy13664 11 VVVIITLYLISCSS 24 (139)
Q Consensus 11 ~~~~~~~~l~~c~~ 24 (139)
+++++++.|.|||.
T Consensus 7 l~~~~~~lL~gCs~ 20 (109)
T PRK11372 7 LIICLPVLLTGCSA 20 (109)
T ss_pred HHHHHHHHHHHhcC
Confidence 45555666999998
Done!