RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13664
(139 letters)
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part of
an alpha/beta hydrolase domain.
Length = 62
Score = 74.9 bits (185), Expect = 5e-19
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQGV--------PVLLMHGFAGASDMWV 107
T ++I G+PVE H + TEDGYIL LHRIP VLL HG +S WV
Sbjct: 1 TSELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWV 59
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 54.5 bits (131), Expect = 1e-09
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 23/114 (20%)
Query: 11 VVVIITLYLISCSSTDYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVER 70
V V+I+L++ + + SNL P S +I G+
Sbjct: 1 VAVLISLFISTSAGGVLTG---QSNLLRRSPVESL-----------CAQLIHPAGYSCTE 46
Query: 71 HFIQTEDGYILALHRIPSQGV--------PVLLMHGFAGASDMWVFRNDTTTDL 116
H IQT+DGY+LAL R+ S+ PVLL HG A D W F N L
Sbjct: 47 HTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAW-FLNSPEQSL 99
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 34.1 bits (79), Expect = 0.013
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 71 HFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVF 108
+ + L G PV+L+HGF G + W+F
Sbjct: 112 RKARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLF 149
>gnl|CDD|179147 PRK00870, PRK00870, haloalkane dehalogenase; Provisional.
Length = 302
Score = 31.1 bits (71), Expect = 0.13
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 65 GFPVERHFIQTEDGY--ILALHRI---PSQGVPVLLMHG 98
+P H++ +DG L +H + P+ G PVLL+HG
Sbjct: 16 DYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHG 54
>gnl|CDD|178419 PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.
Length = 294
Score = 30.5 bits (69), Expect = 0.26
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 78 GYILALHRIPSQGVPVLLMHGFAGASDMW 106
GY + R + G ++L+HGF G +D W
Sbjct: 17 GYNIRYQRAGTSGPALVLVHGFGGNADHW 45
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 29.6 bits (65), Expect = 0.56
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 70 RHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+ DG LA G P++L+HGF G+S +W
Sbjct: 1 ASLLLAADGVRLAYREAGGGGPPLVLLHGFPGSSSVW 37
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 48 PSFIKNIVPTMDIISSQGFPVERHFIQTEDGYILA 82
P K++ PT I ++ G P+ + ED ++
Sbjct: 82 PQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVE 116
>gnl|CDD|225460 COG2908, COG2908, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 237
Score = 28.8 bits (65), Expect = 0.74
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 28 VFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVE-----RHFIQTEDGYILA 82
+FIS D +L P ++ F++ D + G + Q
Sbjct: 1 LFIS-DLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQK 59
Query: 83 LHRIPSQGVPVLLMHGF 99
L R+ +G V +HG
Sbjct: 60 LLRLARKGTRVYYIHGN 76
>gnl|CDD|235420 PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase;
Provisional.
Length = 241
Score = 27.5 bits (62), Expect = 2.2
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 82 ALHRIPSQGVPVLLMHG---------FAGASDM 105
AL + GVP MHG FA A+ M
Sbjct: 62 ALKALSDSGVPCYFMHGNRDFLLGKRFAKAAGM 94
>gnl|CDD|232972 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase,
archaeosine-15-forming. This tRNA-guanine
transglycosylase (tgt) differs from the tgt of E. coli
and other Bacteria in the site of action and the
modification that results. It exchanges
7-cyano-7-deazaguanine (preQ0) with guanine at position
15 of archaeal tRNA; this nucleotide is subsequently
converted to archaeosine, found exclusively in the
Archaea. This enzyme from Haloferax volcanii has been
purified, characterized, and partially sequenced and is
the basis for identifying this family. In contrast,
bacterial tgt catalyzes the exchange of preQ0 or preQ1
for the guanine base at position 34; this nucleotide is
subsequently modified to queuosine. Archeoglobus
fulgidus has both enzymes, while some other Archaea have
just this one [Protein synthesis, tRNA and rRNA base
modification].
Length = 540
Score = 27.6 bits (61), Expect = 2.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 17 LYLISCSSTDYVFISKDSNLQWTLPDVSYPDPSFIKNIVPT-MDIISSQGFPVERHFIQT 75
L+S SS+D+ S+L+ +V Y DP F +P MD + +P+ + I
Sbjct: 290 EVLVSYSSSDFGIYGGFSSLRPQSANVIYLDPVF--GPIPAEMD----EVYPLGQAEIPE 343
Query: 76 EDGY 79
ED
Sbjct: 344 EDDV 347
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 27.1 bits (60), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 5/24 (20%)
Query: 84 HRI----PSQGVPVLLMHGFAGAS 103
H+I +G+P++L+HGF GAS
Sbjct: 76 HKIHYVVQGEGLPIVLIHGF-GAS 98
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 27.1 bits (60), Expect = 3.8
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 62 SSQGFPVERHFIQTE-DG--YILALHRI--PSQGVPVLLMHGFAGASDMWV 107
+ + V + ++ + DG ++ +H + ++G VL +HGF G + W+
Sbjct: 1338 TFKEEQVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWI 1388
>gnl|CDD|233452 TIGR01533, lipo_e_P4, 5'-nucleotidase, lipoprotein e(P4) family.
This model represents a set of bacterial lipoproteins
belonging to a larger acid phosphatase family
(pfam03767), which in turn belongs to the haloacid
dehalogenase (HAD) superfamily of aspartate-dependent
hydrolases. Members are found on the outer membrane of
Gram-negative bacteria and the cytoplasmic membrane of
Gram-positive bacteria. Most members have classic
lipoprotein signal sequences. A critical role of this
5'-nucleotidase in Haemophilus influenzae is the
degradation of external riboside in order to allow
transport into the cell. An earlier suggested role in
hemin transport is no longer current. This enzyme may
also have other physiologically significant roles
[Transport and binding proteins, Other, Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 266
Score = 26.7 bits (59), Expect = 4.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 52 KNIVPTMDIISSQGFPV--ERHFIQTEDG 78
K T+ + GFP E H + +D
Sbjct: 146 KEKAATLKNLKRFGFPQADEEHLLLKKDK 174
>gnl|CDD|236960 PRK11715, PRK11715, inner membrane protein; Provisional.
Length = 436
Score = 26.4 bits (59), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 46 PDPSFIKNIVPTMDIISSQGF 66
P PSF+ + +P IS GF
Sbjct: 236 PHPSFVGDFLPAEREISESGF 256
>gnl|CDD|187794 cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily
protein Csm4. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein.
Length = 301
Score = 26.3 bits (58), Expect = 6.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 26 DYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQG 65
+ +F ++ L W L D Y D SF K + + ++ G
Sbjct: 155 EDIFFKENFGL-WFLAD--YSDESFEKLLEAALKLLEDFG 191
>gnl|CDD|233629 TIGR01903, cas_TM1808_csm4, CRISPR type III-A/MTUBE-associated RAMP
protein Csm4. CRISPR is a term for Clustered Regularly
Interspaced Short Palidromic Repeats. A number of
protein families appear only in association with these
repeats and are designated Cas (CRISPR associated)
proteins. Members of this cas gene family are found in
the mtube subtype of CRISPR/cas locus and designated
Csm4, for CRISPR/cas Subtype Mtube, protein 4 [Mobile
and extrachromosomal element functions, Other].
Length = 297
Score = 26.2 bits (58), Expect = 6.9
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 26 DYVFISKDSNLQWTLPDVSYPDPSFIKNIVPTMDIISSQG 65
+ +F ++ L W L D Y D SF K + + ++ G
Sbjct: 151 EDIFFKENFGL-WFLAD--YSDESFEKLLEAALKLLEDFG 187
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 26.0 bits (58), Expect = 7.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 58 MDIISSQGFPVE-------RHFIQTEDGYILALHRIP 87
D +S G P +HF Q E Y L +
Sbjct: 41 YDAYASVGMPTRYPHWSFGKHFEQLEKLYRRGLSGLA 77
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.
Length = 812
Score = 26.0 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 17/39 (43%)
Query: 36 LQWTLPDVSYPDPSFIKNIVPTMDIISSQG--FPVERHF 72
LQ LPD I S+G FPVER +
Sbjct: 164 LQQLLPDAPV---------------IVSEGRSFPVERRY 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.435
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,316,015
Number of extensions: 646980
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 27
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)