RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13664
(139 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 68.1 bits (166), Expect = 1e-14
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRIP---------SQGVPVLLMHGFAGASDMWV 107
+I+ G+P E + + TEDGYIL + RIP + L HG ++ W+
Sbjct: 16 ISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWI 75
Query: 108 FRND 111
Sbjct: 76 SNLP 79
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 40.4 bits (95), Expect = 6e-05
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 67 PVERHFIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMW 106
+ +I T + P P++L+HG +S MW
Sbjct: 44 RCKSFYIST-RFGQTHVIASGPEDAPPLVLLHGALFSSTMW 83
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 36.2 bits (84), Expect = 0.001
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 67 PVERHFIQTEDGYILALHRI--PSQGVPVLLMHGFAGASDMW 106
+R++ + DG L PVL + G + +
Sbjct: 5 YEDRYW-TSSDGLRLHFRAYEGDISRPPVLCLPGLTRNARDF 45
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 35.3 bits (82), Expect = 0.003
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 14/54 (25%)
Query: 63 SQGFPVERHFIQTEDGYILALHRI------PSQGVPVLLMHGFAGASDMWVFRN 110
GFP + H+++ R+ P G PVL +HG +S +W RN
Sbjct: 5 GTGFPFDPHYVEVLG------ERMHYVDVGPRDGTPVLFLHGNPTSSYLW--RN 50
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 35.4 bits (82), Expect = 0.003
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 71 HFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+ + DG +A G PV+L+ G
Sbjct: 5 QTVPSSDGTPIA-FERSGSGPPVVLVGGALSTRAGG 39
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 35.4 bits (82), Expect = 0.003
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 72 FIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T DG + ++ QG PV+ +HG+ D W
Sbjct: 2 ICTTRDGVEIF-YKDWGQGRPVVFIHGWPLNGDAW 35
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 34.7 bits (80), Expect = 0.006
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 62 SSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
G ++ ++ R V+ +HG + W
Sbjct: 53 EQAGVNGPLPEVERVQAGAISALRWGGSAPRVIFLHGGGQNAHTW 97
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 34.6 bits (80), Expect = 0.006
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 72 FIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMW 106
++ T+DG + P + HG+ ++D W
Sbjct: 3 YVTTKDGVQIFYKDWGPRDAPVIHFHHGWPLSADDW 38
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 33.8 bits (78), Expect = 0.010
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 72 FIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMW 106
+ T DG + P G+PV+ HG+ ++D W
Sbjct: 2 TVTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 33.3 bits (76), Expect = 0.013
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 65 GFPVERHFIQTEDGYILALHRIP-SQGVPVLLMHGFAGASDMW 106
G ++ FI + + S + L HG++ S W
Sbjct: 1 GMALQEEFIDVNGTRVFQRKMVTDSNRRSIALFHGYSFTSMDW 43
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 33.5 bits (77), Expect = 0.014
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 69 ERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
+ I+T G + +G P+ + H ++ +D
Sbjct: 4 TTNIIKTPRG---KFEYFLKGEGPPLCVTHLYSEYNDNG 39
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 33.2 bits (76), Expect = 0.016
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 79 YILALHRIPSQGVPVLLMHGFAGASDMW 106
+ P++L+HG G+ D
Sbjct: 5 IRAQTAQNQHNNSPIVLVHGLFGSLDNL 32
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 33.2 bits (76), Expect = 0.016
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 84 HRIPSQGVPVLLMHGFAGASDMW 106
++ + G +LL+ G+ ++
Sbjct: 21 NQRDTDGPAILLLPGWCHDHRVY 43
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 33.1 bits (76), Expect = 0.016
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G +L HG S ++
Sbjct: 67 SGPLMLFFHGITSNSAVF 84
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 33.1 bits (76), Expect = 0.019
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 78 GYILALHRIPSQGVPVLLMHGFAGASDMW 106
L + ++ V+L+HG G+ W
Sbjct: 4 SNQLHFAKPTARTPLVVLVHGLLGSGADW 32
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 33.1 bits (76), Expect = 0.019
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 63 SQGFPVERHFIQTEDGYILALHRI-PSQGVPVLLMHGF---AGASDMW 106
++ + + Q V+L+HG A A+ W
Sbjct: 2 AKTVEIIEKRFPS-GTLASHALVAGDPQSPAVVLLHGAGPGAHAASNW 48
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 32.8 bits (75), Expect = 0.024
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G P++ +HG +
Sbjct: 20 SGTPIIFLHGLSLDKQST 37
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 32.5 bits (74), Expect = 0.027
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 66 FPVERHFIQTEDGYILALH-----RIPSQGVPVLLMHGFAGASDMW 106
+PV + T G L++ + G +LLMHG + W
Sbjct: 18 YPV-HYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHGKNFCAGTW 62
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 32.7 bits (75), Expect = 0.027
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 72 FIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T DG + ++ G P++ HG+ +D W
Sbjct: 2 TFTTRDGTQIY-YKDWGSGQPIVFSHGWPLNADSW 35
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 32.4 bits (73), Expect = 0.035
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 73 IQTEDGY---ILALHRIPSQGVP-VLLMHGFAGASDMWVF 108
++TE + L RIP +L +HG G+ + +
Sbjct: 3 VRTERLTLAGLSVLARIPEAPKALLLALHGLQGSKEHILA 42
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 32.1 bits (73), Expect = 0.040
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 89 QGVPVLLMHGFAGASDMW 106
GVPV+L+HGF + W
Sbjct: 23 TGVPVVLIHGFPLSGHSW 40
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 31.9 bits (73), Expect = 0.041
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G PVL HG+ +DMW
Sbjct: 18 SGKPVLFSHGWLLDADMW 35
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 32.1 bits (73), Expect = 0.043
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
+ L+ G+ ++
Sbjct: 18 DPHAPTLFLLSGWCQDHRLF 37
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 31.9 bits (73), Expect = 0.044
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
++ +HGF S +
Sbjct: 13 VETNQVLVFLHGFLSDSRTY 32
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 31.8 bits (73), Expect = 0.045
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 67 PVERHFIQTEDGYILALHRI--PSQGVPVLLMHGFAGASDMW 106
F+ T DG LA +R+ ++ + L + MW
Sbjct: 3 AGNLSFLATSDGASLA-YRLDGAAEKPLLALSNSIGTTLHMW 43
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 31.9 bits (73), Expect = 0.048
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G PV+L+HGF + W
Sbjct: 22 TGQPVVLIHGFPLSGHSW 39
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 31.6 bits (72), Expect = 0.051
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G PV+L+HG+ W
Sbjct: 22 SGQPVVLIHGYPLDGHSW 39
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 31.9 bits (72), Expect = 0.053
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 71 HFIQTEDGYIL-ALHRIPSQGVP-----VLLMHGFAGASDMWV 107
H ++ +G L P + VP +L+ GFA D +
Sbjct: 10 HVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFA 52
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 31.3 bits (71), Expect = 0.078
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 69 ERHFIQTEDGYI-LALHRIPSQGVPVLLMHGFAGASDMW 106
E ++ E G +++ S+G +LL+HG ++ W
Sbjct: 16 EDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSW 54
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 31.2 bits (71), Expect = 0.083
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G PV+ + G GA W
Sbjct: 42 TGDPVVFIAGRGGAGRTW 59
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 31.1 bits (71), Expect = 0.087
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 81 LALH-RIPSQGVPVLLMHGFAGASDMW 106
L+L + V+L+ G G+ W
Sbjct: 5 LSLSPPPYADAPVVVLISGLGGSGSYW 31
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 30.8 bits (70), Expect = 0.098
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 70 RHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+ + + + G PV+L+HG+ + W
Sbjct: 8 TVGTENQAPIEIY-YEDHGTGKPVVLIHGWPLSGRSW 43
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 30.3 bits (68), Expect = 0.13
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 63 SQGFPVERHFIQTEDG---YILALHRIPSQGVPVLLMHGFAGASDMW 106
+ IQ + + AL VLL+HG +S+ W
Sbjct: 2 AASVEQREGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETW 48
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 30.5 bits (69), Expect = 0.14
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 66 FPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+ + D +I V+ +HG A +S +W
Sbjct: 19 WWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLW 59
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 30.4 bits (69), Expect = 0.17
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
+P++++HG G + +
Sbjct: 51 QPHALPLIVLHGGPGMAHNY 70
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 30.0 bits (68), Expect = 0.19
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 14/54 (25%)
Query: 63 SQGFPVERHFIQTEDGYILALHRI------PSQGVPVLLMHGFAGASDMWVFRN 110
S+ +E + VL +HG +S +W RN
Sbjct: 2 SKPIEIEIRRAPVLG------SSMAYRETGAQDAPVVLFLHGNPTSSHIW--RN 47
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 29.6 bits (67), Expect = 0.28
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 58 MDIISSQGFPVERHFIQTE---DGYILALHRIPSQGVPVLLMHGFAGASDMW 106
M Q F+ E + + V+L+HG + W
Sbjct: 2 MSY-QPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGW 52
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 29.6 bits (67), Expect = 0.32
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMW 106
T + + + L H V+L+HG + W
Sbjct: 2 TATEELTFESTSRFAEVDVDGPLKLHYHEAGVGNDQTVVLLHGGGPGAASW 52
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 29.1 bits (66), Expect = 0.35
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 90 GVPVLLMHGFAGASDMW 106
V ++L+HG+ +++W
Sbjct: 13 NVHLVLLHGWGLNAEVW 29
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 29.0 bits (65), Expect = 0.44
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
+LL+ G ++ W
Sbjct: 20 DPADPALLLVMGGNLSALGW 39
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 29.0 bits (65), Expect = 0.44
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 65 GFPVERHFIQTE-DGYILALHRIPSQGVP-VLLMHGFAGASDMWVFR 109
G + I+ L+ + G+P VL +HG+ G+ + R
Sbjct: 1 GMEAKLSSIEIPVGQDELSGTLLTPTGMPGVLFVHGWGGSQHHSLVR 47
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 28.8 bits (65), Expect = 0.50
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
+L +HG ++
Sbjct: 13 KKSPNTLLFVHGSGCNLKIF 32
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 28.5 bits (64), Expect = 0.58
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
I F+ G +G PV+L+HG ++
Sbjct: 5 AEQISEKSERAYVERFV-NAGGVETRYLEA-GKGQPVILIHGGGAGAESE 52
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 28.5 bits (64), Expect = 0.69
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 62 SSQGFPVERHFIQTEDGYILALHRIPS-QGVPVLLMHGFAGASDMW 106
SS FP + ++ E + + G PVL +HG +S +W
Sbjct: 3 SSSEFPFAKRTVEVEG---ATIAYVDEGSGQPVLFLHGNPTSSYLW 45
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 28.4 bits (64), Expect = 0.69
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 88 SQGVPVLLMHGFAGASDMW 106
VLL HGF +MW
Sbjct: 26 GGEKTVLLAHGFGCDQNMW 44
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 28.5 bits (64), Expect = 0.72
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 89 QGVPVLLMHGFAGASDMWVFRNDTTTDLL 117
G V+++HG + W +
Sbjct: 32 NGETVIMLHGGGPGAGGWSNYYRNVGPFV 60
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 28.2 bits (62), Expect = 0.93
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 67 PVERHFIQTEDGYILALHRI------PSQGVPVLLMHG 98
+ ++ T DG HRI G P + +HG
Sbjct: 13 AYDSGWLDTGDG-----HRIYWELSGNPNGKPAVFIHG 45
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus
islandicus rod-shaped virusorganism_taxid}
Length = 55
Score = 26.2 bits (57), Expect = 0.94
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 70 RHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFR 109
R+++++ED + H + G V + G S+ V R
Sbjct: 11 RYYVESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRR 50
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 28.0 bits (63), Expect = 1.0
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 63 SQGFP-VERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
+ FP +I T + R+ G P+LL+HGF MW
Sbjct: 7 ADLFPGFGSEWINTSS---GRIFARVGGDGPPLLLLHGFPQTHVMW 49
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 27.9 bits (61), Expect = 1.0
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 67 PVERHFIQTEDGYILALHRI------PSQGVPVLLMHG 98
P ++ ++ +D H + G PV+++HG
Sbjct: 10 PYQQGSLKVDDR-----HTLYFEQCGNPHGKPVVMLHG 42
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 27.7 bits (62), Expect = 1.1
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 60 IISSQGFPVERHFIQTEDGY-ILALHRIPSQGVPVLLMHG 98
+ + G ++ +++ I + PVL++HG
Sbjct: 160 LDAWDGRKLKGNYV--RVAQTIRVEDFVDKYTKPVLIVHG 197
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 27.6 bits (62), Expect = 1.2
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 66 FP-VERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
F E+ + T + ++ G P+LL+HG+ MW
Sbjct: 2 FTNFEQTIVDTTE---ARINLVKAGHGAPLLLLHGYPQTHVMW 41
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 27.8 bits (62), Expect = 1.3
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 87 PSQGVPVLLMHGFAGA-SDMW 106
P +G + ++HG G + +
Sbjct: 22 PVEGPALFVLHGGPGGNAYVL 42
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 27.3 bits (61), Expect = 1.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 67 PVERHFIQTEDGYILALHRIPSQGVPVLLMHGF 99
+E F++ I + VL +HG
Sbjct: 3 AMEEKFLEFGGNQICLCSWGSPEHPVVLCIHGI 35
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 27.2 bits (61), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 65 GFPVERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
GF ER + D + ++ + G +LL+HGF MW
Sbjct: 4 GF--ERRLVDVGD---VTINCVVGGSGPALLLLHGFPQNLHMW 41
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 27.0 bits (60), Expect = 1.8
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 61 ISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+S P G +A + G P+L HG +S +W
Sbjct: 1 MSLGAKPFGEKKFIEIKGRRMA-YIDEGTGDPILFQHGNPTSSYLW 45
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 67 PVERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
+ + +Q D + +H G +LL+HG+ G W
Sbjct: 8 DFKHYEVQLPD---VKIHYVREGAGPTLLLLHGWPGFWWEW 45
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 26.8 bits (60), Expect = 2.0
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 55 VPTMDI---ISSQGFPVERHFIQTEDGYI---------LALHR 85
+ T DI +++ G V + ++ +G + +H
Sbjct: 94 IGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHS 136
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 66 FPVERHFIQTEDGYILA--LHRIPSQGVP-VLLMHGFAG 101
F DG L + ++ HGF
Sbjct: 19 FQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTA 57
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 59 DIISSQGFPVERHFIQTEDGYILALHRIPSQ-GVPVLLMHG 98
D + + + ++ L ++ + +Q PV L+HG
Sbjct: 177 DRLPFKDLTLGGFYL--RIAQQLPIYEVSAQFTKPVCLIHG 215
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 26.4 bits (59), Expect = 3.1
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 68 VERHFIQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
E + + + + LH QG V+L+HGF W
Sbjct: 10 FESAYREVDG---VKLHYVKGGQGPLVMLVHGFGQTWYEW 46
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 26.6 bits (58), Expect = 3.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 92 PVLLMHGFAGASDMWVFRN 110
P++L HG G ++
Sbjct: 9 PIVLAHGMLGFDNILGVDY 27
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 26.3 bits (58), Expect = 3.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 84 HRIPSQGVPVLLMHGFAGASDMW 106
+ VLL+HGF G S
Sbjct: 10 FFFEAGERAVLLLHGFTGNSADV 32
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 26.1 bits (58), Expect = 3.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 89 QGVPVLLMHGFAGASDMW 106
+G PV+L+HG +
Sbjct: 24 EGQPVILIHGSGPGVSAY 41
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 26.1 bits (58), Expect = 3.9
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 89 QGVPVLLMHGFAGASDMW 106
++L + MW
Sbjct: 25 NAPWIVLSNSLGTDLSMW 42
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 26.0 bits (58), Expect = 4.4
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 47 DPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFA-GASDM 105
DPS +K P ++ +PV Q G + FA A++M
Sbjct: 138 DPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAK----------HDHVAWAFARKANEM 187
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 26.0 bits (56), Expect = 5.3
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 65 GFPVERHFIQTEDGYILALHRI-------PSQGVPVLLMHGFAGASDMWVFRNDTTT 114
GF + Q G+ + + PV+ +HG + + +
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFIHGNGDNAISFDMPPGNVS 64
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 25.5 bits (56), Expect = 5.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 88 SQGVPVLLMHGFAGASDMW 106
++ PV+++HG GAS +
Sbjct: 1 AEHNPVVMVHGIGGASFNF 19
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 25.6 bits (57), Expect = 5.7
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 92 PVLLMHGFAGASDMW 106
++ GF +W
Sbjct: 22 SIMFAPGFGCDQSVW 36
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 26.1 bits (56), Expect = 5.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 92 PVLLMHGFAGASDMW 106
PV+ +HG AG++ +
Sbjct: 24 PVVFVHGLAGSAGQF 38
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 25.8 bits (56), Expect = 5.9
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 35 NLQWTLPDVSYPDPSFIKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVL 94
+L L + S + R ++ + I + PV
Sbjct: 152 DLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGC-PVH 210
Query: 95 LMHG 98
++ G
Sbjct: 211 ILQG 214
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.6 bits (56), Expect = 6.9
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 26 DYVFISKDSNLQ-WT--LPDVSYPDPS--FIKNIVPTMD 59
DY D+N W +P V ++PT+D
Sbjct: 1251 DYSVSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVD 1289
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor
complex; 2.50A {Pseudomonas aeruginosa} PDB: 4fgi_B
Length = 192
Score = 25.1 bits (54), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 88 SQGVPVLLMHGFAGASDMWVFRNDTTTDLLPVPDVSSYKW 127
SQ +LMH F+G+S V + T ++ D+S +W
Sbjct: 115 SQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRW 154
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 25.3 bits (55), Expect = 7.7
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 49 SFIKNIVPTMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGF--AGASDMW 106
S + ++ + + + + T G I HR + + G +D +
Sbjct: 2 SHMASMTGGQQMGRGSMAALNKEMVNTLLGPIYTCHR--EGNPCFVFLSGAGFFSTADNF 59
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 25.1 bits (54), Expect = 8.8
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 72 FIQTEDGYILALHRIPS----QGVPVLLMHGFAGASDMWVFRN 110
F Q + L + P+LL+ G N
Sbjct: 9 FSQPKSVLDAGLTCQGASPSSVSKPILLVPGTGTTGPQSFDSN 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.435
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,251,025
Number of extensions: 120874
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 95
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)