RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13664
(139 letters)
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 69.3 bits (168), Expect = 2e-15
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRIP---------SQGVPVLLMHGFAGASDMWV 107
+I+ G+P E + + TEDGYIL + RIP + L HG ++ W+
Sbjct: 16 ISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWI 75
Query: 108 F 108
Sbjct: 76 S 76
>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas
campestris, pv. citri [TaxId: 339]}
Length = 313
Score = 42.9 bits (99), Expect = 3e-06
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 67 PVERHFIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMWVFR 109
P ++ ++ +D + L + G PV+++HG G R
Sbjct: 10 PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMR 53
>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens
[TaxId: 615]}
Length = 313
Score = 41.4 bits (95), Expect = 9e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 67 PVERHFIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMWVFR 109
+ ++ T DG+ + G P + +HG G R
Sbjct: 10 AYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHR 53
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 41.0 bits (94), Expect = 1e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 65 GFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
GFP + H+++ + + P G PVL +HG +S +W
Sbjct: 4 GFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans
[TaxId: 1916]}
Length = 275
Score = 35.3 bits (79), Expect = 0.001
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 72 FIQTEDGYILALHRI-PSQGVPVLLMHGFAGASDMW 106
+ T DG + P G+PV+ HG+ ++D W
Sbjct: 2 TVTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 35.2 bits (79), Expect = 0.001
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 62 SSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
S + ++ + L G V L HGF + W
Sbjct: 5 SCNPSDMSHGYVTVKPRVRLH-FVELGSGPAVCLCHGFPESWYSW 48
>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 274
Score = 33.7 bits (75), Expect = 0.004
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 72 FIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T DG + G PV+ +HG+ D W
Sbjct: 2 ICTTRDGVEIFYKDWGQ-GRPVVFIHGWPLNGDAW 35
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
paucimobilis, UT26, LinB [TaxId: 13689]}
Length = 298
Score = 31.0 bits (68), Expect = 0.036
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 69 ERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
E+ FI+ G +A + G P+L HG +S +W
Sbjct: 9 EKKFIEI-KGRRMA-YIDEGTGDPILFQHGNPTSSYLW 44
>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens
[TaxId: 294]}
Length = 273
Score = 31.0 bits (68), Expect = 0.038
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 75 TEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T DG + S G P++ HG+ +D W
Sbjct: 5 TRDGTQIYYKDWGS-GQPIVFSHGWPLNADSW 35
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 30.7 bits (68), Expect = 0.049
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 71 HFIQTEDGYILALHRIPSQG------VPVLLMHGFAGASDMW 106
H ++ +G L + P + +L+ GFA D +
Sbjct: 7 HVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHF 48
>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 30.1 bits (66), Expect = 0.070
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 67 PVERHFIQTEDGYILALHRIPSQG---VPVLLMHGFAGASDMWVF 108
IQ + + +P G VLL+HG +S+ W
Sbjct: 5 EQREGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQN 49
>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium
radiobacter [TaxId: 358]}
Length = 293
Score = 29.5 bits (64), Expect = 0.10
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 70 RHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+H+ + R + G +LL+HG+ G W
Sbjct: 9 KHYEVQLPDVKIHYVREGA-GPTLLLLHGWPGFWWEW 44
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 286
Score = 29.7 bits (65), Expect = 0.10
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 72 FIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+ E ++ L+ + S P+ L+H G++ ++
Sbjct: 7 LVNPEGPTLMRLNSVQSSERPLFLVHPIEGSTTVF 41
>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId:
51671]}
Length = 279
Score = 29.5 bits (64), Expect = 0.10
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 73 IQTEDGYILALH-RIPSQGVPVLLMHGFAGASDMW 106
+ E+ + L+ G PV+L+HG+ W
Sbjct: 5 VGNENSTPIELYYEDQGSGQPVVLIHGYPLDGHSW 39
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 271
Score = 29.5 bits (64), Expect = 0.12
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 75 TEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
+DG + S G PVL HG+ +DMW
Sbjct: 5 AKDGTQIYFKDWGS-GKPVLFSHGWLLDADMW 35
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 277
Score = 29.1 bits (63), Expect = 0.16
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G PV+L+HGF + W
Sbjct: 22 TGQPVVLIHGFPLSGHSW 39
>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 290
Score = 29.1 bits (63), Expect = 0.17
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
P + ++ MHG G S +
Sbjct: 22 PEEKAKLMTMHGGPGMSHDY 41
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 28.7 bits (62), Expect = 0.21
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 87 PSQGVPVLLMHGFAGASDMW 106
+LL+ G ++ W
Sbjct: 19 DPADPALLLVMGGNLSALGW 38
>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus
thermophilus [TaxId: 274]}
Length = 238
Score = 28.6 bits (62), Expect = 0.25
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 73 IQTEDGY---ILALHRIPSQGVP-VLLMHGFAGASDMW 106
++TE + L RIP +L +HG G+ +
Sbjct: 3 VRTERLTLAGLSVLARIPEAPKALLLALHGLQGSKEHI 40
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 258
Score = 28.3 bits (61), Expect = 0.25
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 89 QGVPVLLMHGFAGASDMW 106
+G +L+HG W
Sbjct: 1 EGKHFVLVHGACHGGWSW 18
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 28.3 bits (61), Expect = 0.31
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 89 QGVPVLLMHGFAGASDMW 106
G V+++HG + W
Sbjct: 29 NGETVIMLHGGGPGAGGW 46
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 27.8 bits (60), Expect = 0.43
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 92 PVLLMHGFAGASDMW 106
PV+++HG +S +
Sbjct: 4 PVIVVHGLFDSSYSF 18
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 27.6 bits (59), Expect = 0.46
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 81 LALHRIPSQGVPVLLMHGFAGASDMW 106
L + ++ V+L+HG G+ W
Sbjct: 7 LHFAKPTARTPLVVLVHGLLGSGADW 32
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 27.4 bits (60), Expect = 0.49
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 92 PVLLMHGFAGASDMWVFRN 110
P++L HG G ++
Sbjct: 9 PIVLAHGMLGFDNILGVDY 27
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 27.6 bits (59), Expect = 0.57
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 65 GFPVERHFIQTEDGY----ILALHRIPSQGVP-VLLMHGFAGASDMW 106
+P +++ GY L S L +HG S ++
Sbjct: 17 QYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLY 63
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 27.2 bits (58), Expect = 0.63
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 85 RIPSQGVPVLLMHGFAGASDMW 106
+ VLL+HGF G S
Sbjct: 6 FFEAGERAVLLLHGFTGNSADV 27
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 27.2 bits (59), Expect = 0.68
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 89 QGVPVLLMHGFAGASDMW 106
+ PV+++HG GAS +
Sbjct: 1 EHNPVVMVHGIGGASFNF 18
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 27.0 bits (58), Expect = 0.74
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 75 TEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T+D Y + +L+HG G + +
Sbjct: 2 TKDSYFHKSRAGVAGAPLFVLLHGTGGDENQF 33
>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp.
[TaxId: 512]}
Length = 318
Score = 27.1 bits (58), Expect = 0.82
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 73 IQTEDGYILALHRIPSQGVPVLLMHGFAGASDMWVFRND 111
+ + Y+ ++ P+ L+HG W D
Sbjct: 41 VTVDQMYVRYQIPQRAKRYPITLIHGCCLTGMTWETTPD 79
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.7 bits (57), Expect = 0.90
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 90 GVPVLLMHGFAGASDMW 106
V ++L+HG+ +++W
Sbjct: 11 NVHLVLLHGWGLNAEVW 27
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 26.3 bits (56), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 89 QGVPVLLMHGFAGASDMW 106
+G PV+L+HG ++
Sbjct: 21 KGQPVILIHGGGAGAESE 38
>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD
{Pseudomonas fluorescens [TaxId: 294]}
Length = 271
Score = 26.3 bits (56), Expect = 1.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 89 QGVPVLLMHGFAGASDMW 106
+G PV+L+HG +
Sbjct: 22 EGQPVILIHGSGPGVSAY 39
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 26.3 bits (57), Expect = 1.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 92 PVLLMHGFAGASDMW 106
PV+L+HG AG
Sbjct: 10 PVILVHGLAGTDKFA 24
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 25.8 bits (56), Expect = 2.0
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 88 SQGVPVLLMHGFAGASDMWVFRN 110
S P+LL+ G N
Sbjct: 29 SVSKPILLVPGTGTTGPQSFDSN 51
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 25.6 bits (54), Expect = 2.4
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 57 TMDIISSQGFPVERHFIQTEDGYILALHRIPSQGVPVLLMHGFAGASDMW 106
T++II + AL Q V+L+HG +
Sbjct: 1 TVEIIE--------KRFPSGTLASHALVAGDPQSPAVVLLHGAGPGAHAA 42
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 25.6 bits (56), Expect = 2.5
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 87 PSQGVPVLLMHGFAG-ASDMWVFRN 110
P +P+++ HG +
Sbjct: 2 PPAPLPLVIWHGMGDSCCNPLSMGA 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.435
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,325
Number of extensions: 23997
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 43
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)