BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13665
         (105 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8CFY5|COX10_MOUSE Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus
           GN=Cox10 PE=2 SV=1
          Length = 443

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 69  LVVLTSMAGYAMAPAPFEWSSFLI 92
           LVV T+ AG+A+AP PF+WS FL+
Sbjct: 167 LVVSTTSAGFALAPGPFDWSCFLL 190


>sp|Q5R460|COX10_PONAB Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii
           GN=COX10 PE=2 SV=1
          Length = 443

 Score = 35.4 bits (80), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 69  LVVLTSMAGYAMAPAPFEWSSFLI 92
           LVV T+ AG+A+AP PF+W  FL+
Sbjct: 168 LVVSTTAAGFALAPGPFDWPCFLL 191


>sp|Q12887|COX10_HUMAN Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens
           GN=COX10 PE=1 SV=3
          Length = 443

 Score = 35.4 bits (80), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 69  LVVLTSMAGYAMAPAPFEWSSFLI 92
           LVV T+ AG+A+AP PF+W  FL+
Sbjct: 168 LVVSTTAAGFALAPGPFDWPCFLL 191


>sp|F4JMI5|GUX7_ARATH Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana
           GN=PGSIP7 PE=3 SV=1
          Length = 494

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 61  VIPEPDWP--LVVLTSMAGYAMAPAPFEWSSFLICFSQLQLL 100
           V+  P +P  +V   S+ GYA   APF W SF+   S LQ++
Sbjct: 430 VMAFPSYPDGVVRALSVFGYAFCCAPFLWVSFVKITSHLQIM 471


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,591,001
Number of Sequences: 539616
Number of extensions: 1467115
Number of successful extensions: 3177
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3174
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)