Query psy13665
Match_columns 105
No_of_seqs 49 out of 51
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 17:18:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1380|consensus 99.6 2.7E-16 5.8E-21 132.2 2.9 84 5-104 60-143 (409)
2 PLN02776 prenyltransferase 97.3 4.3E-05 9.2E-10 62.6 -1.1 43 61-103 1-44 (341)
3 COG0109 CyoE Polyprenyltransfe 97.1 7.9E-05 1.7E-09 61.2 -0.7 45 59-103 22-67 (304)
4 TIGR01475 ubiA_other putative 90.9 0.038 8.2E-07 42.3 -1.4 45 59-103 6-51 (282)
5 PRK12878 ubiA 4-hydroxybenzoat 90.9 0.046 9.9E-07 43.5 -1.0 47 57-103 32-87 (314)
6 PRK12873 ubiA prenyltransferas 90.4 0.055 1.2E-06 43.4 -0.9 45 59-103 14-59 (294)
7 PRK13362 protoheme IX farnesyl 90.4 0.03 6.5E-07 44.5 -2.4 45 59-103 17-62 (306)
8 PRK09573 (S)-2,3-di-O-geranylg 88.2 0.055 1.2E-06 41.3 -2.3 45 59-103 7-52 (279)
9 PRK12869 ubiA protoheme IX far 86.7 0.07 1.5E-06 41.2 -2.5 45 59-103 6-51 (279)
10 PRK12886 ubiA prenyltransferas 86.0 0.14 3E-06 40.2 -1.2 45 59-103 12-57 (291)
11 PRK04375 protoheme IX farnesyl 85.9 0.085 1.8E-06 41.1 -2.4 45 59-103 14-59 (296)
12 TIGR01473 cyoE_ctaB protoheme 85.5 0.1 2.2E-06 39.9 -2.1 45 59-103 4-50 (280)
13 TIGR01474 ubiA_proteo 4-hydrox 85.5 0.11 2.4E-06 40.2 -2.0 45 59-103 8-55 (281)
14 PRK13106 ubiA prenyltransferas 83.3 0.12 2.5E-06 41.2 -2.7 59 45-103 5-64 (300)
15 PRK12870 ubiA 4-hydroxybenzoat 81.5 0.22 4.7E-06 39.0 -1.8 44 60-103 17-61 (290)
16 PRK12884 ubiA prenyltransferas 79.6 0.24 5.3E-06 37.4 -2.0 45 59-103 8-52 (279)
17 PLN00012 chlorophyll synthetas 77.1 0.28 6E-06 40.6 -2.6 63 39-102 69-137 (375)
18 PRK12874 ubiA prenyltransferas 75.9 0.44 9.6E-06 37.5 -1.6 45 59-103 12-62 (291)
19 PRK12882 ubiA prenyltransferas 72.7 0.48 1E-05 36.1 -2.1 45 59-103 8-53 (276)
20 PRK12847 ubiA 4-hydroxybenzoat 72.6 0.52 1.1E-05 36.3 -1.9 44 60-103 15-60 (285)
21 PRK12883 ubiA prenyltransferas 72.1 0.54 1.2E-05 35.8 -1.9 43 60-102 8-51 (277)
22 PRK12848 ubiA 4-hydroxybenzoat 64.0 1.3 2.8E-05 34.2 -1.3 44 60-103 13-57 (282)
23 PF05461 ApoL: Apolipoprotein 61.0 3.7 7.9E-05 33.5 0.7 31 72-103 111-141 (313)
24 PLN02809 4-hydroxybenzoate non 60.8 1 2.2E-05 35.6 -2.4 45 59-103 13-60 (289)
25 PRK12895 ubiA prenyltransferas 60.6 1 2.2E-05 35.9 -2.5 45 59-103 7-52 (286)
26 PRK07566 bacteriochlorophyll/c 54.7 2.1 4.6E-05 33.8 -1.6 60 42-102 14-79 (314)
27 TIGR01476 chlor_syn_BchG bacte 54.2 3.6 7.8E-05 31.5 -0.4 42 59-100 4-50 (283)
28 PRK12871 ubiA prenyltransferas 41.7 2.9 6.3E-05 33.2 -2.7 41 60-100 10-53 (297)
29 PRK12888 ubiA prenyltransferas 40.9 6.9 0.00015 30.8 -0.7 34 70-103 21-54 (284)
30 cd08265 Zn_ADH3 Alcohol dehydr 25.8 29 0.00062 26.9 0.5 13 7-19 7-19 (384)
31 PF10063 DUF2301: Uncharacteri 23.4 14 0.0003 27.7 -1.5 15 18-32 2-16 (135)
No 1
>KOG1380|consensus
Probab=99.60 E-value=2.7e-16 Score=132.17 Aligned_cols=84 Identities=32% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCcccCCCCceeEeeeeeeecCchhhhhccccCCCcceecCCceeeeeccccccccccccCCcceeeeecccceeecCcC
Q psy13665 5 NSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAP 84 (105)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMAP~P 84 (105)
|.+-+.-.|.-.|++++-|--..|+|-+-.+...+ |--.||||.|||.|||+|+|+||||||+|
T Consensus 60 ~~~~a~~~pd~~v~~~~~~~~s~~l~ly~lp~k~~----------------~~y~eLsK~rLT~LVV~tt~~gYalap~p 123 (409)
T KOG1380|consen 60 NTVFATATPDSQVTATTGRWSSRPLALYTLPGKYA----------------RCYLELSKPRLTMLVVLTTMTGYALAPGP 123 (409)
T ss_pred ccchhhcCCCcceeecchhhcccchhhcCCCcchH----------------HHHHHhcccceEEEEeeeccccccccccC
Confidence 44445555666666666655555554443332221 33468999999999999999999999999
Q ss_pred ccHHHHHHHHhhhhhhhccc
Q psy13665 85 FEWSSFLICFSQLQLLHSVL 104 (105)
Q Consensus 85 fd~stFl~~slGTgL~Saa~ 104 (105)
||+.+|+++++||+||||+.
T Consensus 124 ~s~~~l~~~tvGT~L~S~sA 143 (409)
T KOG1380|consen 124 FSFPTLLYTTVGTGLCSASA 143 (409)
T ss_pred CCcchhHHHhhhhHHHHhhh
Confidence 99999999999999999973
No 2
>PLN02776 prenyltransferase
Probab=97.25 E-value=4.3e-05 Score=62.65 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=39.1
Q ss_pred ccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665 61 VIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 61 LSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa 103 (105)
|+|-|++.+|++|+.+||.+|. +..+|..++++.+|+.|++++
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~~l~~~~lg~~l~~aa 44 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAAS 44 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999995 467999999999999999876
No 3
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=7.9e-05 Score=61.19 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=42.8
Q ss_pred ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|-|++.|+++|+.+||.+|| +..++..++++.+|+.|++++
T Consensus 22 l~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~ 67 (304)
T COG0109 22 LQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGG 67 (304)
T ss_pred HHHhCCeeeehHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 899999999999999999875
No 4
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=90.93 E-value=0.038 Score=42.28 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=39.8
Q ss_pred ccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|.+.+.++..++.+|+.+| ++.+|+..++++.+|+.+..++
T Consensus 6 ~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~a 51 (282)
T TIGR01475 6 LELIKFEHTVFALPFAYAGALLAAKGLPGLKTLILILIAAVSARTA 51 (282)
T ss_pred HHHHccccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998 6778999999999999988765
No 5
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=90.91 E-value=0.046 Score=43.50 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=40.2
Q ss_pred cccccc---ccCCcceeeeecccceeecCc------CccHHHHHHHHhhhhhhhcc
Q psy13665 57 KDAKVI---PEPDWPLVVLTSMAGYAMAPA------PFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 57 kd~kLS---K~RLTaLVVlTamAGYAMAP~------Pfd~stFl~~slGTgL~Saa 103 (105)
.=.||+ |-|.+.++++++..|+++|.. .+++..++++.+|+.|++++
T Consensus 32 ~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a 87 (314)
T PRK12878 32 PYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGA 87 (314)
T ss_pred HHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345666 999999999999999999987 78988899999999887664
No 6
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=90.43 E-value=0.055 Score=43.41 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=39.7
Q ss_pred ccccccCCcceeeeecccceeecCc-CccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPA-PFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~-Pfd~stFl~~slGTgL~Saa 103 (105)
+++.|.+.+.|++.++..|+.+||. +.++..++++.+|+.|++++
T Consensus 14 ~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g~~l~~~a 59 (294)
T PRK12873 14 LRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGA 59 (294)
T ss_pred hCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4669999999999999999999985 47888899999999998876
No 7
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=90.42 E-value=0.03 Score=44.48 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=39.4
Q ss_pred ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|-+.+.++++++.+|+++|. +.+++..++++.+|+.|++++
T Consensus 17 ~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~~~~~~~lg~~l~~aa 62 (306)
T PRK13362 17 IQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVAS 62 (306)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999984 678888888888999998875
No 8
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=88.23 E-value=0.055 Score=41.34 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=38.8
Q ss_pred ccccccCCcceeeeecccceeecCc-CccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPA-PFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~-Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|.+.+.++++++..|+++|.+ .+++..++++.+|+.+++++
T Consensus 7 ~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~ 52 (279)
T PRK09573 7 FELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAG 52 (279)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999954 56888899999999998765
No 9
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=86.67 E-value=0.07 Score=41.19 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=37.8
Q ss_pred ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|-+.+.++.+++.+|+++|. +.+++..++++.+|+.|++++
T Consensus 6 ~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a 51 (279)
T PRK12869 6 LKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGG 51 (279)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999994 567888888888888887664
No 10
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.99 E-value=0.14 Score=40.18 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=37.8
Q ss_pred ccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|.+.+.++..++..|+.+| ++..++..++++.+|..++.++
T Consensus 12 ~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~~l~~~~l~~~l~~~a 57 (291)
T PRK12886 12 LEMIKFSHTLFALPFAGIGAVLAALGLPGASQLDWILMAMVGARTA 57 (291)
T ss_pred HHHhCccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998 4455777788888998887654
No 11
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=85.87 E-value=0.085 Score=41.06 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=39.3
Q ss_pred ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|-+.+.+++.++..|+++|. +.+|+..++++.+|+.|++++
T Consensus 14 ~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa 59 (296)
T PRK04375 14 LALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGA 59 (296)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999995 568888899999999988765
No 12
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=85.55 E-value=0.1 Score=39.87 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=38.8
Q ss_pred ccccccCCcceeeeecccceeecCcC--ccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPAP--FEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~P--fd~stFl~~slGTgL~Saa 103 (105)
.++.|.+.+.+.++++.+|+++|... +++..++++.+|+.+++++
T Consensus 4 ~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~l~~~~~~l~~~a 50 (280)
T TIGR01473 4 LQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAAS 50 (280)
T ss_pred HHHccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788888999999999999999765 6888899999999888765
No 13
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=85.49 E-value=0.11 Score=40.16 Aligned_cols=45 Identities=7% Similarity=-0.076 Sum_probs=37.1
Q ss_pred ccccccCCcceeeeecccceeecCc--C-ccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPA--P-FEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~--P-fd~stFl~~slGTgL~Saa 103 (105)
+++.|-+.+.+++++++.|+.+|.. . .+|..++++.+|+.+++++
T Consensus 8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a 55 (281)
T TIGR01474 8 MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGA 55 (281)
T ss_pred HccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999964 2 4777788888998887554
No 14
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=83.34 E-value=0.12 Score=41.23 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCceeeeeccccccccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665 45 PGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 45 ~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa 103 (105)
|+|.+-.-++=|.=.+|.|.+-+.+...++..|+.+| ++.+++..++++.+|+.+.+++
T Consensus 5 ~~~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~~l~l~~lg~~l~~~a 64 (300)
T PRK13106 5 PGGLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPISTLILIFLALFFLRTA 64 (300)
T ss_pred cccchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4555554444444568899998888889999999998 5677888899999999887664
No 15
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=81.48 E-value=0.22 Score=39.00 Aligned_cols=44 Identities=5% Similarity=-0.103 Sum_probs=36.9
Q ss_pred cccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665 60 KVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 60 kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa 103 (105)
++.|.+.+.|+++++..|+.+| .+.+++..++++.+|+.+++++
T Consensus 17 R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~~~~~~a 61 (290)
T PRK12870 17 RWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGALATSAA 61 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 4468888899999999999998 6778888899999998877654
No 16
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=79.58 E-value=0.24 Score=37.40 Aligned_cols=45 Identities=9% Similarity=0.072 Sum_probs=37.2
Q ss_pred ccccccCCcceeeeecccceeecCcCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~Pfd~stFl~~slGTgL~Saa 103 (105)
.|++|.+.+.+.+++...|+++|+..+++..++++.+|+.+.+++
T Consensus 8 ~~l~R~~~~~~~~~~~~~g~~la~~~~~~~~~~l~~l~~~l~~~a 52 (279)
T PRK12884 8 LELLRPEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGS 52 (279)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHH
Confidence 468888988899999999999998877666778888888877654
No 17
>PLN00012 chlorophyll synthetase; Provisional
Probab=77.12 E-value=0.28 Score=40.60 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=48.3
Q ss_pred CcceecCCceeeeeccccccccccccCCcceeeeecccceeecCcCccHHH------HHHHHhhhhhhhc
Q psy13665 39 LDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSS------FLICFSQLQLLHS 102 (105)
Q Consensus 39 l~~v~~~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMAP~Pfd~st------Fl~~slGTgL~Sa 102 (105)
..+.+-.+|-..|+|+-+.=.+|.|-|.+.+.+++...|++ +++.++|.. ++++.+|+.|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~-~~g~~~~~~~~~~~~ll~~ll~~~L~~~ 137 (375)
T PLN00012 69 VNQLLGIKGAAQETDIWKIRLQLTKPVTWPPLVWGVLCGAA-ASGNFHWTLEDVAKSIVCMLMSGPFLTG 137 (375)
T ss_pred hHHhhCCCCcccchHHHHHHHHHhCHHHHHHHHHHHHHHHH-HcCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 34556778888888887777899999999999999999999 577888874 3555665655543
No 18
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=75.95 E-value=0.44 Score=37.50 Aligned_cols=45 Identities=4% Similarity=-0.001 Sum_probs=38.8
Q ss_pred ccccccCCcceeeeecccceeec------CcCccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMA------PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMA------P~Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|.+.+.+...++..|+.+| ++.++|..++++.+|+.+++++
T Consensus 12 ~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~~l~~~a 62 (291)
T PRK12874 12 SELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAAVSARNF 62 (291)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888 4567999999999999988654
No 19
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=72.73 E-value=0.48 Score=36.07 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=35.7
Q ss_pred ccccccCCcceeeeecccceeecCcCccH-HHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPAPFEW-SSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~Pfd~-stFl~~slGTgL~Saa 103 (105)
.+|+|.+.+.+.++++..||++|.+.++. ..++++.+|+.+.+++
T Consensus 8 ~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~~~~~~l~~l~~~l~~~~ 53 (276)
T PRK12882 8 LELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGA 53 (276)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999766543 3477888888877654
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=72.62 E-value=0.52 Score=36.26 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=34.9
Q ss_pred cccccCCcceeeeecccceeec-CcC-ccHHHHHHHHhhhhhhhcc
Q psy13665 60 KVIPEPDWPLVVLTSMAGYAMA-PAP-FEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 60 kLSK~RLTaLVVlTamAGYAMA-P~P-fd~stFl~~slGTgL~Saa 103 (105)
++.|.+.+.+.++++..|+++| +.. +++..++++.+|+.+.+++
T Consensus 15 R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~~~l~~~a 60 (285)
T PRK12847 15 RLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRSA 60 (285)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHH
Confidence 4566667778889999999998 444 7888899999998877654
No 21
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=72.06 E-value=0.54 Score=35.81 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=33.3
Q ss_pred cccccCCcceeeeecccceeecCcCcc-HHHHHHHHhhhhhhhc
Q psy13665 60 KVIPEPDWPLVVLTSMAGYAMAPAPFE-WSSFLICFSQLQLLHS 102 (105)
Q Consensus 60 kLSK~RLTaLVVlTamAGYAMAP~Pfd-~stFl~~slGTgL~Sa 102 (105)
+++|.|.+.+.+++...|+++|...+. +..++++.+|..+.++
T Consensus 8 ~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~ 51 (277)
T PRK12883 8 EITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCS 51 (277)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 678999999999999999999966554 5566777777766543
No 22
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=63.98 E-value=1.3 Score=34.24 Aligned_cols=44 Identities=7% Similarity=0.026 Sum_probs=33.9
Q ss_pred cccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665 60 KVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 60 kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa 103 (105)
++.|.+...++++++..|+.+| ++..++..++++.+|+.+.+++
T Consensus 13 R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g~~l~~~a 57 (282)
T PRK12848 13 RLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLGVFLMRAA 57 (282)
T ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3446777888888899999998 5667888888888998776543
No 23
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=61.04 E-value=3.7 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=23.7
Q ss_pred eecccceeecCcCccHHHHHHHHhhhhhhhcc
Q psy13665 72 LTSMAGYAMAPAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 72 lTamAGYAMAP~Pfd~stFl~~slGTgL~Saa 103 (105)
+.++.|+++||.-+-.| +++++.|.||..++
T Consensus 111 ilsIlGLaLAPvT~G~S-L~LsaaG~Glgaaa 141 (313)
T PF05461_consen 111 ILSILGLALAPVTAGGS-LALSAAGIGLGAAA 141 (313)
T ss_pred HHHHHhHHhccccccch-HHHHHhhhHHHHHh
Confidence 34568999999988776 77777888876654
No 24
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=60.81 E-value=1 Score=35.61 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=36.0
Q ss_pred ccccccCCcceeeeecccceeec--CcC-ccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMA--PAP-FEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMA--P~P-fd~stFl~~slGTgL~Saa 103 (105)
+|+.|-+.+.|.+++...|++++ ++. .++..++++.+|+.++.++
T Consensus 13 ~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a 60 (289)
T PLN02809 13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGA 60 (289)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 56788889999999998888887 553 6788888999998776554
No 25
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=60.58 E-value=1 Score=35.90 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=35.2
Q ss_pred ccccccCCcceeeeecccceeecCc-CccHHHHHHHHhhhhhhhcc
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMAPA-PFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMAP~-Pfd~stFl~~slGTgL~Saa 103 (105)
.+|.|.+.|.+.+.++..|+.+|.+ ..++..+++..+|..++.++
T Consensus 7 ~el~k~~~t~~al~~a~~g~~lA~~~~~~~~~l~l~~~~~~~~rsa 52 (286)
T PRK12895 7 VDYIKLEHTVFDLPFILAGYVIAAGHYIHPIKILLILIAAVSARTS 52 (286)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999853 35666677777777666544
No 26
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=54.74 E-value=2.1 Score=33.80 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=39.7
Q ss_pred eecCCceeeeeccccccccccccCCcceeeeecccceeecCcCccHHH------HHHHHhhhhhhhc
Q psy13665 42 VLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSS------FLICFSQLQLLHS 102 (105)
Q Consensus 42 v~~~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMAP~Pfd~st------Fl~~slGTgL~Sa 102 (105)
.+-|||..-..|+-+.=.++.|-+-+...+++..+|++.+ +.++|.. ++.+.+|+.|.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~ 79 (314)
T PRK07566 14 LLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSS-GAFGWTLENVLKLLAGMLLAGPLLCG 79 (314)
T ss_pred ccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHc-CCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 5678888777777666678888877666666677777764 3445544 4546676666543
No 27
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=54.22 E-value=3.6 Score=31.45 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=30.8
Q ss_pred ccccccCCcceeeeecccceeec---CcC-ccHHHHHHHH-hhhhhh
Q psy13665 59 AKVIPEPDWPLVVLTSMAGYAMA---PAP-FEWSSFLICF-SQLQLL 100 (105)
Q Consensus 59 ~kLSK~RLTaLVVlTamAGYAMA---P~P-fd~stFl~~s-lGTgL~ 100 (105)
.++.|-|.+.+.+++...|+++| +.. ++|..+++++ +++.|.
T Consensus 4 ~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~ 50 (283)
T TIGR01476 4 IELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLG 50 (283)
T ss_pred eEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHH
Confidence 35788888889999999999998 554 8888666644 455444
No 28
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=41.66 E-value=2.9 Score=33.21 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=25.0
Q ss_pred cccccCCcceeeeecccceeec---CcCccHHHHHHHHhhhhhh
Q psy13665 60 KVIPEPDWPLVVLTSMAGYAMA---PAPFEWSSFLICFSQLQLL 100 (105)
Q Consensus 60 kLSK~RLTaLVVlTamAGYAMA---P~Pfd~stFl~~slGTgL~ 100 (105)
+|.|.+...+..+..+.|+++| ++.++|..+++..+|..++
T Consensus 10 ~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~ 53 (297)
T PRK12871 10 DLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFG 53 (297)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 4566654444444555788887 6888998776444444443
No 29
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=40.90 E-value=6.9 Score=30.76 Aligned_cols=34 Identities=6% Similarity=0.248 Sum_probs=27.6
Q ss_pred eeeecccceeecCcCccHHHHHHHHhhhhhhhcc
Q psy13665 70 VVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSV 103 (105)
Q Consensus 70 VVlTamAGYAMAP~Pfd~stFl~~slGTgL~Saa 103 (105)
..+++..|+..+++.+++..+++..+|+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a 54 (284)
T PRK12888 21 AYIAALTAMFASDGSVHWADLLLVTVAMVGARTF 54 (284)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456667777789999999999999999887765
No 30
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.75 E-value=29 Score=26.93 Aligned_cols=13 Identities=62% Similarity=0.915 Sum_probs=10.6
Q ss_pred cccCCCCceeEee
Q psy13665 7 VKADPRPELKVTA 19 (105)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (105)
.|-|||||.|.|.
T Consensus 7 ~~~~~~~~~~~~~ 19 (384)
T cd08265 7 AKWDPRPEYKLTP 19 (384)
T ss_pred cccCCCcccccCH
Confidence 4789999998864
No 31
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=23.40 E-value=14 Score=27.70 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=11.4
Q ss_pred eeeeeeecCchhhhh
Q psy13665 18 TATTVHTYDKPLQRK 32 (105)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (105)
.+.++|-|+||+.|-
T Consensus 2 sl~~IHIYl~~l~r~ 16 (135)
T PF10063_consen 2 SLSTIHIYLKPLHRI 16 (135)
T ss_pred chhHhHHHHHHHHHH
Confidence 356789999998773
Done!